Query         gi|254780816|ref|YP_003065229.1| hypothetical protein CLIBASIA_03535 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 63
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 23785
Date          Mon May 30 12:14:24 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780816.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 3ga2_A Endonuclease V; alpha-b   8.6      93  0.0039   12.9   0.9   10   27-36    186-195 (246)
  2 2w36_A Endonuclease V; hypoxan   6.6 1.4E+02  0.0057   12.0   1.1   11   26-36    176-186 (225)
  3 3goc_A Endonuclease V; alpha-b   6.4 1.4E+02  0.0057   12.0   0.9   11   26-36    180-190 (237)
  4 1vcl_A Hemolytic lectin CEL-II   5.9 1.5E+02  0.0063   11.8   2.2   16   35-50    378-393 (432)
  5 2p8i_A Putative dioxygenase; Y   5.8 1.5E+02  0.0063   11.8   1.7   12    4-15     12-23  (117)
  6 2peb_A Putative dioxygenase; Z   5.3 1.6E+02  0.0068   11.6   1.7   12    4-15     11-22  (122)
  7 1hll_A Alpha-2A adrenergic rec   5.1      27  0.0011   16.0  -3.3   11   14-24      2-12  (32)
  8 2axc_A Colicin E7; translocati   4.8 1.7E+02  0.0071   11.5   0.6   20   26-52    221-240 (264)
  9 1wue_A Mandelate racemase/muco   4.8      96  0.0041   12.9  -0.7   16   19-34    142-157 (386)
 10 1rh1_A Colicin B; FEPA, cytoto   4.0   2E+02  0.0084   11.0   0.5   23   28-57    280-302 (511)

No 1  
>3ga2_A Endonuclease V; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Bacillus subtilis}
Probab=8.57  E-value=93  Score=12.95  Aligned_cols=10  Identities=30%  Similarity=0.760  Sum_probs=7.2

Q ss_pred             EEEEEEECCE
Q ss_conf             5788984427
Q gi|254780816|r   27 IPVYISIGKA   36 (63)
Q Consensus        27 ipvyisigka   36 (63)
                      -|+|+|.|.-
T Consensus       186 kPvyVS~Gh~  195 (246)
T 3ga2_A          186 KPIFLSCGNY  195 (246)
T ss_dssp             CCEEEEEEES
T ss_pred             CCEEECCCCC
T ss_conf             8999817978


No 2  
>2w36_A Endonuclease V; hypoxanthine, endonuclease, endonucleasev, hydrolase, inosine, DNA damage, DNA repair; HET: BRU; 2.10A {Thermotoga maritima} PDB: 2w35_A 3hd0_A
Probab=6.55  E-value=1.4e+02  Score=12.01  Aligned_cols=11  Identities=27%  Similarity=0.764  Sum_probs=6.9

Q ss_pred             EEEEEEEECCE
Q ss_conf             45788984427
Q gi|254780816|r   26 TIPVYISIGKA   36 (63)
Q Consensus        26 tipvyisigka   36 (63)
                      .-|+|+|.|.-
T Consensus       176 ~~PiyVS~Gh~  186 (225)
T 2w36_A          176 SAPIFVSPGHL  186 (225)
T ss_dssp             SCCEEEEECSS
T ss_pred             CCCEEECCCCC
T ss_conf             88989838978


No 3  
>3goc_A Endonuclease V; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: YES; 1.60A {Streptomyces avermitilis ma-4680}
Probab=6.42  E-value=1.4e+02  Score=12.02  Aligned_cols=11  Identities=36%  Similarity=0.878  Sum_probs=7.1

Q ss_pred             EEEEEEEECCE
Q ss_conf             45788984427
Q gi|254780816|r   26 TIPVYISIGKA   36 (63)
Q Consensus        26 tipvyisigka   36 (63)
                      +-|+|+|.|.-
T Consensus       180 ~kPiyVS~Gh~  190 (237)
T 3goc_A          180 VKPVFVSVGHR  190 (237)
T ss_dssp             SCCEEEEEEES
T ss_pred             CCCEEEECCCC
T ss_conf             77889938968


No 4  
>1vcl_A Hemolytic lectin CEL-III; hemolysis, hemagglutination, pore-forming, calcium, toxin; HET: BTB; 1.70A {Cucumaria echinata} SCOP: b.42.2.1 b.42.2.1 d.281.1.1 PDB: 2z48_A* 2z49_A*
Probab=5.86  E-value=1.5e+02  Score=11.78  Aligned_cols=16  Identities=44%  Similarity=0.665  Sum_probs=9.2

Q ss_pred             CEEEEEEEEEEEHHHH
Q ss_conf             2789999997410234
Q gi|254780816|r   35 KACMIQIQILETEQKD   50 (63)
Q Consensus        35 kacmiqiqileteqkd   50 (63)
                      ..||-|..|+++|++-
T Consensus       378 ~~~~~~~~~~~~~~~~  393 (432)
T 1vcl_A          378 RGCMWQLAIETTEVKS  393 (432)
T ss_dssp             SEEEEEEEEEEEETTT
T ss_pred             HHEEEEEEEEEEEEEC
T ss_conf             2100122256778633


No 5  
>2p8i_A Putative dioxygenase; YP_555069.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE CIT; 1.40A {Burkholderia xenovorans LB400} SCOP: d.58.55.1 PDB: 2nyh_A*
Probab=5.85  E-value=1.5e+02  Score=11.77  Aligned_cols=12  Identities=42%  Similarity=0.783  Sum_probs=8.8

Q ss_pred             EEEEEEEEEECC
Q ss_conf             898999996122
Q gi|254780816|r    4 IFEIHVYFQRKS   15 (63)
Q Consensus         4 ifeihvyfqrks   15 (63)
                      -|.+||||...+
T Consensus        12 ~yHaHVYfd~~~   23 (117)
T 2p8i_A           12 SWHAHVYFDASS   23 (117)
T ss_dssp             EEEEEEEECGGG
T ss_pred             CEEEEEECCCCC
T ss_conf             568899538779


No 6  
>2peb_A Putative dioxygenase; ZP_00109509.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 1.46A {Nostoc punctiforme pcc 73102}
Probab=5.32  E-value=1.6e+02  Score=11.59  Aligned_cols=12  Identities=50%  Similarity=0.789  Sum_probs=8.8

Q ss_pred             EEEEEEEEEECC
Q ss_conf             898999996122
Q gi|254780816|r    4 IFEIHVYFQRKS   15 (63)
Q Consensus         4 ifeihvyfqrks   15 (63)
                      -|.+||||...+
T Consensus        11 ~yHaHVYfd~~~   22 (122)
T 2peb_A           11 GFHAHVYFDAAS   22 (122)
T ss_dssp             EEEEEEEECGGG
T ss_pred             EEEEEEECCCCC
T ss_conf             247899668768


No 7  
>1hll_A Alpha-2A adrenergic receptor; helix-linker-helix, membrane protein; NMR {Synthetic} SCOP: j.94.1.1 PDB: 1hof_A 1ho9_A 1hod_A
Probab=5.12  E-value=27  Score=15.98  Aligned_cols=11  Identities=45%  Similarity=0.588  Sum_probs=7.2

Q ss_pred             CCEEEEEEEEE
Q ss_conf             22033556676
Q gi|254780816|r   14 KSIFNLFKISI   24 (63)
Q Consensus        14 ksifnlfkisi   24 (63)
                      -||+||.-||+
T Consensus         2 ASI~nLcaIs~   12 (32)
T 1hll_A            2 SSIVHLCAISL   12 (32)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHH
T ss_conf             37999999999


No 8  
>2axc_A Colicin E7; translocation domain, hydrolase; 1.70A {Escherichia coli str}
Probab=4.84  E-value=1.7e+02  Score=11.45  Aligned_cols=20  Identities=40%  Similarity=0.690  Sum_probs=11.2

Q ss_pred             EEEEEEEECCEEEEEEEEEEEHHHHHH
Q ss_conf             457889844278999999741023456
Q gi|254780816|r   26 TIPVYISIGKACMIQIQILETEQKDQR   52 (63)
Q Consensus        26 tipvyisigkacmiqiqileteqkdqr   52 (63)
                      .-|+|||.       ..+|..+|-.||
T Consensus       221 l~PvYVs~-------s~~l~~~~~~~r  240 (264)
T 2axc_A          221 QKPVYVSV-------TDVLTPAQVKQR  240 (264)
T ss_dssp             CCCEEEEE-------EECCCHHHHHHH
T ss_pred             CCCEEEEE-------ECCCCHHHHHHH
T ss_conf             89768982-------134774442467


No 9  
>1wue_A Mandelate racemase/muconate lactonizing enzyme family protein; structural genomics, unknown function, nysgxrc target T2185; 2.10A {Enterococcus faecalis V583} SCOP: c.1.11.2 d.54.1.1
Probab=4.77  E-value=96  Score=12.85  Aligned_cols=16  Identities=44%  Similarity=0.636  Sum_probs=5.2

Q ss_pred             EEEEEEEEEEEEEEEC
Q ss_conf             5566765457889844
Q gi|254780816|r   19 LFKISIATIPVYISIG   34 (63)
Q Consensus        19 lfkisiatipvyisig   34 (63)
                      .|.-.-..|||-||.|
T Consensus       142 ffgptrrkipvgislg  157 (386)
T 1wue_A          142 FFGPTRRKIPVGISLG  157 (386)
T ss_dssp             GSSSCCSEEECCEEEC
T ss_pred             HHCCCCCCCCCEEEEC
T ss_conf             7197434455304541


No 10 
>1rh1_A Colicin B; FEPA, cytotoxic bacterial protein, TONB, antibiotic; 2.50A {Escherichia coli} SCOP: b.110.1.1 f.1.1.1
Probab=4.03  E-value=2e+02  Score=11.04  Aligned_cols=23  Identities=35%  Similarity=0.680  Sum_probs=0.0

Q ss_pred             EEEEEECCEEEEEEEEEEEHHHHHHHHCCC
Q ss_conf             788984427899999974102345653142
Q gi|254780816|r   28 PVYISIGKACMIQIQILETEQKDQRWKKNK   57 (63)
Q Consensus        28 pvyisigkacmiqiqileteqkdqrwkknk   57 (63)
                      |+|+|       ...+|..+|-.||-++++
T Consensus       280 PlYVs-------~~~~L~~~~~~~rq~een  302 (511)
T 1rh1_A          280 PLYIS-------AVEILDSNSLSQRQEAEN  302 (511)
T ss_dssp             CEEEE-------EECCCBHHHHHHHHHHHH
T ss_pred             CEEEE-------EECCCCHHHHHHHHHHHH
T ss_conf             76999-------741368355556899988


Done!