Query gi|254780816|ref|YP_003065229.1| hypothetical protein CLIBASIA_03535 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 63 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 23785 Date Mon May 30 12:14:24 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780816.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 3ga2_A Endonuclease V; alpha-b 8.6 93 0.0039 12.9 0.9 10 27-36 186-195 (246) 2 2w36_A Endonuclease V; hypoxan 6.6 1.4E+02 0.0057 12.0 1.1 11 26-36 176-186 (225) 3 3goc_A Endonuclease V; alpha-b 6.4 1.4E+02 0.0057 12.0 0.9 11 26-36 180-190 (237) 4 1vcl_A Hemolytic lectin CEL-II 5.9 1.5E+02 0.0063 11.8 2.2 16 35-50 378-393 (432) 5 2p8i_A Putative dioxygenase; Y 5.8 1.5E+02 0.0063 11.8 1.7 12 4-15 12-23 (117) 6 2peb_A Putative dioxygenase; Z 5.3 1.6E+02 0.0068 11.6 1.7 12 4-15 11-22 (122) 7 1hll_A Alpha-2A adrenergic rec 5.1 27 0.0011 16.0 -3.3 11 14-24 2-12 (32) 8 2axc_A Colicin E7; translocati 4.8 1.7E+02 0.0071 11.5 0.6 20 26-52 221-240 (264) 9 1wue_A Mandelate racemase/muco 4.8 96 0.0041 12.9 -0.7 16 19-34 142-157 (386) 10 1rh1_A Colicin B; FEPA, cytoto 4.0 2E+02 0.0084 11.0 0.5 23 28-57 280-302 (511) No 1 >3ga2_A Endonuclease V; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Bacillus subtilis} Probab=8.57 E-value=93 Score=12.95 Aligned_cols=10 Identities=30% Similarity=0.760 Sum_probs=7.2 Q ss_pred EEEEEEECCE Q ss_conf 5788984427 Q gi|254780816|r 27 IPVYISIGKA 36 (63) Q Consensus 27 ipvyisigka 36 (63) -|+|+|.|.- T Consensus 186 kPvyVS~Gh~ 195 (246) T 3ga2_A 186 KPIFLSCGNY 195 (246) T ss_dssp CCEEEEEEES T ss_pred CCEEECCCCC T ss_conf 8999817978 No 2 >2w36_A Endonuclease V; hypoxanthine, endonuclease, endonucleasev, hydrolase, inosine, DNA damage, DNA repair; HET: BRU; 2.10A {Thermotoga maritima} PDB: 2w35_A 3hd0_A Probab=6.55 E-value=1.4e+02 Score=12.01 Aligned_cols=11 Identities=27% Similarity=0.764 Sum_probs=6.9 Q ss_pred EEEEEEEECCE Q ss_conf 45788984427 Q gi|254780816|r 26 TIPVYISIGKA 36 (63) Q Consensus 26 tipvyisigka 36 (63) .-|+|+|.|.- T Consensus 176 ~~PiyVS~Gh~ 186 (225) T 2w36_A 176 SAPIFVSPGHL 186 (225) T ss_dssp SCCEEEEECSS T ss_pred CCCEEECCCCC T ss_conf 88989838978 No 3 >3goc_A Endonuclease V; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: YES; 1.60A {Streptomyces avermitilis ma-4680} Probab=6.42 E-value=1.4e+02 Score=12.02 Aligned_cols=11 Identities=36% Similarity=0.878 Sum_probs=7.1 Q ss_pred EEEEEEEECCE Q ss_conf 45788984427 Q gi|254780816|r 26 TIPVYISIGKA 36 (63) Q Consensus 26 tipvyisigka 36 (63) +-|+|+|.|.- T Consensus 180 ~kPiyVS~Gh~ 190 (237) T 3goc_A 180 VKPVFVSVGHR 190 (237) T ss_dssp SCCEEEEEEES T ss_pred CCCEEEECCCC T ss_conf 77889938968 No 4 >1vcl_A Hemolytic lectin CEL-III; hemolysis, hemagglutination, pore-forming, calcium, toxin; HET: BTB; 1.70A {Cucumaria echinata} SCOP: b.42.2.1 b.42.2.1 d.281.1.1 PDB: 2z48_A* 2z49_A* Probab=5.86 E-value=1.5e+02 Score=11.78 Aligned_cols=16 Identities=44% Similarity=0.665 Sum_probs=9.2 Q ss_pred CEEEEEEEEEEEHHHH Q ss_conf 2789999997410234 Q gi|254780816|r 35 KACMIQIQILETEQKD 50 (63) Q Consensus 35 kacmiqiqileteqkd 50 (63) ..||-|..|+++|++- T Consensus 378 ~~~~~~~~~~~~~~~~ 393 (432) T 1vcl_A 378 RGCMWQLAIETTEVKS 393 (432) T ss_dssp SEEEEEEEEEEEETTT T ss_pred HHEEEEEEEEEEEEEC T ss_conf 2100122256778633 No 5 >2p8i_A Putative dioxygenase; YP_555069.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE CIT; 1.40A {Burkholderia xenovorans LB400} SCOP: d.58.55.1 PDB: 2nyh_A* Probab=5.85 E-value=1.5e+02 Score=11.77 Aligned_cols=12 Identities=42% Similarity=0.783 Sum_probs=8.8 Q ss_pred EEEEEEEEEECC Q ss_conf 898999996122 Q gi|254780816|r 4 IFEIHVYFQRKS 15 (63) Q Consensus 4 ifeihvyfqrks 15 (63) -|.+||||...+ T Consensus 12 ~yHaHVYfd~~~ 23 (117) T 2p8i_A 12 SWHAHVYFDASS 23 (117) T ss_dssp EEEEEEEECGGG T ss_pred CEEEEEECCCCC T ss_conf 568899538779 No 6 >2peb_A Putative dioxygenase; ZP_00109509.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 1.46A {Nostoc punctiforme pcc 73102} Probab=5.32 E-value=1.6e+02 Score=11.59 Aligned_cols=12 Identities=50% Similarity=0.789 Sum_probs=8.8 Q ss_pred EEEEEEEEEECC Q ss_conf 898999996122 Q gi|254780816|r 4 IFEIHVYFQRKS 15 (63) Q Consensus 4 ifeihvyfqrks 15 (63) -|.+||||...+ T Consensus 11 ~yHaHVYfd~~~ 22 (122) T 2peb_A 11 GFHAHVYFDAAS 22 (122) T ss_dssp EEEEEEEECGGG T ss_pred EEEEEEECCCCC T ss_conf 247899668768 No 7 >1hll_A Alpha-2A adrenergic receptor; helix-linker-helix, membrane protein; NMR {Synthetic} SCOP: j.94.1.1 PDB: 1hof_A 1ho9_A 1hod_A Probab=5.12 E-value=27 Score=15.98 Aligned_cols=11 Identities=45% Similarity=0.588 Sum_probs=7.2 Q ss_pred CCEEEEEEEEE Q ss_conf 22033556676 Q gi|254780816|r 14 KSIFNLFKISI 24 (63) Q Consensus 14 ksifnlfkisi 24 (63) -||+||.-||+ T Consensus 2 ASI~nLcaIs~ 12 (32) T 1hll_A 2 SSIVHLCAISL 12 (32) T ss_dssp HHHHHHHHHHT T ss_pred HHHHHHHHHHH T ss_conf 37999999999 No 8 >2axc_A Colicin E7; translocation domain, hydrolase; 1.70A {Escherichia coli str} Probab=4.84 E-value=1.7e+02 Score=11.45 Aligned_cols=20 Identities=40% Similarity=0.690 Sum_probs=11.2 Q ss_pred EEEEEEEECCEEEEEEEEEEEHHHHHH Q ss_conf 457889844278999999741023456 Q gi|254780816|r 26 TIPVYISIGKACMIQIQILETEQKDQR 52 (63) Q Consensus 26 tipvyisigkacmiqiqileteqkdqr 52 (63) .-|+|||. ..+|..+|-.|| T Consensus 221 l~PvYVs~-------s~~l~~~~~~~r 240 (264) T 2axc_A 221 QKPVYVSV-------TDVLTPAQVKQR 240 (264) T ss_dssp CCCEEEEE-------EECCCHHHHHHH T ss_pred CCCEEEEE-------ECCCCHHHHHHH T ss_conf 89768982-------134774442467 No 9 >1wue_A Mandelate racemase/muconate lactonizing enzyme family protein; structural genomics, unknown function, nysgxrc target T2185; 2.10A {Enterococcus faecalis V583} SCOP: c.1.11.2 d.54.1.1 Probab=4.77 E-value=96 Score=12.85 Aligned_cols=16 Identities=44% Similarity=0.636 Sum_probs=5.2 Q ss_pred EEEEEEEEEEEEEEEC Q ss_conf 5566765457889844 Q gi|254780816|r 19 LFKISIATIPVYISIG 34 (63) Q Consensus 19 lfkisiatipvyisig 34 (63) .|.-.-..|||-||.| T Consensus 142 ffgptrrkipvgislg 157 (386) T 1wue_A 142 FFGPTRRKIPVGISLG 157 (386) T ss_dssp GSSSCCSEEECCEEEC T ss_pred HHCCCCCCCCCEEEEC T ss_conf 7197434455304541 No 10 >1rh1_A Colicin B; FEPA, cytotoxic bacterial protein, TONB, antibiotic; 2.50A {Escherichia coli} SCOP: b.110.1.1 f.1.1.1 Probab=4.03 E-value=2e+02 Score=11.04 Aligned_cols=23 Identities=35% Similarity=0.680 Sum_probs=0.0 Q ss_pred EEEEEECCEEEEEEEEEEEHHHHHHHHCCC Q ss_conf 788984427899999974102345653142 Q gi|254780816|r 28 PVYISIGKACMIQIQILETEQKDQRWKKNK 57 (63) Q Consensus 28 pvyisigkacmiqiqileteqkdqrwkknk 57 (63) |+|+| ...+|..+|-.||-++++ T Consensus 280 PlYVs-------~~~~L~~~~~~~rq~een 302 (511) T 1rh1_A 280 PLYIS-------AVEILDSNSLSQRQEAEN 302 (511) T ss_dssp CEEEE-------EECCCBHHHHHHHHHHHH T ss_pred CEEEE-------EECCCCHHHHHHHHHHHH T ss_conf 76999-------741368355556899988 Done!