RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780816|ref|YP_003065229.1| hypothetical protein
CLIBASIA_03535 [Candidatus Liberibacter asiaticus str. psy62]
         (63 letters)



>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4;
          1.60A {Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB:
          1qzy_A* 1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A*
          1r5g_A* 1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A*
          2ea4_A* 2ga2_A* 2oaz_A*
          Length = 478

 Score = 25.5 bits (55), Expect = 3.1
 Identities = 8/15 (53%), Positives = 9/15 (60%)

Query: 45 ETEQKDQRWKKNKSK 59
          E   K +R KK KSK
Sbjct: 32 EEAAKKKRRKKKKSK 46


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.331    0.141    0.418 

Gapped
Lambda     K      H
   0.267   0.0450    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 511,496
Number of extensions: 16182
Number of successful extensions: 32
Number of sequences better than 10.0: 1
Number of HSP's gapped: 32
Number of HSP's successfully gapped: 2
Length of query: 63
Length of database: 5,693,230
Length adjustment: 34
Effective length of query: 29
Effective length of database: 4,868,934
Effective search space: 141199086
Effective search space used: 141199086
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 50 (23.7 bits)