BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780816|ref|YP_003065229.1| hypothetical protein
CLIBASIA_03535 [Candidatus Liberibacter asiaticus str. psy62]
         (63 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780816|ref|YP_003065229.1| hypothetical protein CLIBASIA_03535 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 63

 Score =  128 bits (322), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 63/63 (100%), Positives = 63/63 (100%)

Query: 1  MFEIFEIHVYFQRKSIFNLFKISIATIPVYISIGKACMIQIQILETEQKDQRWKKNKSKH 60
          MFEIFEIHVYFQRKSIFNLFKISIATIPVYISIGKACMIQIQILETEQKDQRWKKNKSKH
Sbjct: 1  MFEIFEIHVYFQRKSIFNLFKISIATIPVYISIGKACMIQIQILETEQKDQRWKKNKSKH 60

Query: 61 LLF 63
          LLF
Sbjct: 61 LLF 63


>gi|254780125|ref|YP_003064538.1| prophage antirepressor [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 262

 Score = 20.8 bits (42), Expect = 4.7,   Method: Composition-based stats.
 Identities = 7/23 (30%), Positives = 12/23 (52%)

Query: 34  GKACMIQIQILETEQKDQRWKKN 56
           GK C + +Q +E   +  +W  N
Sbjct: 224 GKMCDVPMQHVEGSTQQLKWNSN 246


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.331    0.141    0.418 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,661
Number of Sequences: 1233
Number of extensions: 1051
Number of successful extensions: 3
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 63
length of database: 328,796
effective HSP length: 34
effective length of query: 29
effective length of database: 286,874
effective search space:  8319346
effective search space used:  8319346
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 31 (16.5 bits)