Query gi|254780817|ref|YP_003065230.1| preprotein translocase subunit SecB [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 152
No_of_seqs 116 out of 935
Neff 5.9
Searched_HMMs 23785
Date Mon May 30 12:49:54 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780817.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1qyn_A Protein-export protein 100.0 0 0 327.0 10.9 148 1-150 1-150 (153)
2 1fx3_A SECB, protein-export pr 100.0 0 0 322.3 12.2 146 4-151 13-160 (169)
3 2k8f_B Cellular tumor antigen 20.0 22 0.00092 15.7 0.4 24 17-40 6-29 (39)
4 3fnr_A Arginyl-tRNA synthetase 14.0 57 0.0024 13.2 1.4 35 101-137 336-370 (464)
5 2f9i_B Acetyl-coenzyme A carbo 13.8 55 0.0023 13.3 1.3 57 91-149 42-106 (285)
6 3let_A Adenosine monophosphate 11.8 71 0.003 12.7 2.2 18 112-129 286-305 (314)
7 3n72_A Putative activator of H 10.8 49 0.0021 13.6 0.2 113 13-139 31-151 (164)
8 2ko1_A CTR148A, GTP pyrophosph 9.7 71 0.003 12.7 0.7 53 13-65 2-54 (88)
9 2eqo_A TNF receptor-associated 9.7 85 0.0036 12.2 2.7 30 107-136 39-70 (140)
10 1iie_A Protein (HLA-DR antigen 8.2 42 0.0017 14.0 -1.0 31 88-118 3-33 (75)
No 1
>1qyn_A Protein-export protein SECB; tetramer, greek KEY beta sheet, chaperone; 2.35A {Escherichia coli} SCOP: d.33.1.1
Probab=100.00 E-value=0 Score=327.04 Aligned_cols=148 Identities=28% Similarity=0.545 Sum_probs=139.3
Q ss_pred CCCC--CCCCCHHHHEEEHHHCCCCCCHHHHHHHHHCCCCEEEEEEEECCCCCCCCEEEEEEEEEECCCCCCCCCEEEEE
Q ss_conf 9831--13010123013011103788716776431015841588865121214654057999984046766543012577
Q gi|254780817|r 1 MEKK--QKQAFTILNQYIKDFSFESPNAPHCFFDIQNQQPTIKINVQVNANTISGADFDVILSFDIEAKNNDKVIFRLEL 78 (152)
Q Consensus 1 M~~~--~~~~~~I~~qYIKDLSFE~P~ap~~f~~~~~~~p~~~i~i~i~~~~l~~~~~EV~l~l~~~ak~~~~~~f~~Ei 78 (152)
|.++ .+++|+|+++||||||||+|++|++|. .+|.|++++++|+++++++++.|||.|+++++++.+++++|++|+
T Consensus 1 Mse~~~~~~~f~I~~~YiKDlSfE~P~ap~~f~--~~~~p~~~~~v~i~~~~l~~~~~EV~L~l~~~a~~~~~~~f~vEl 78 (153)
T 1qyn_A 1 MSEQNNTEMTFQIQRIYTKDISFEAPNAPHVFQ--KDWQPEVKLDLDTASSQLADDVYEVVLRVTVTASLGEETAFLCEV 78 (153)
T ss_dssp --------CEEEEEEEEEEEEEEECTTHHHHTT--SCCCCEEEEEEEEEEEEEETTEEEEEEEEEEEEEETTEEEEEEEE
T ss_pred CCCCCCCCCEEEEEEEEEEECCCCCCCCHHHHC--CCCCCCEEEEEECCCEECCCCEEEEEEEEEEEECCCCCEEEEEEE
T ss_conf 986556786489887898502543899815636--466984378883463044786399999999998258816999999
Q ss_pred EEEEEEEECCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf 546899975887103444666304553417899999999973899886605539899999999999864201
Q gi|254780817|r 79 AYSGILRILDCPQEHISQILFVECPQLLFPFVRQIISNTIRDGGFPPLVIDTIDFLKLFQQEKSLIKNKEGL 150 (152)
Q Consensus 79 ~yagif~i~~~~~~~l~~illv~~P~~lfP~~R~ii~~~~~~~Gfp~l~l~~IdF~~LY~~~~~~~~~~~~~ 150 (152)
+|||||.|.+.++++++++|+|+||++||||||++|++++++|||||++|+||||++||++|++|++++++.
T Consensus 79 ~yagif~i~~~~~e~~~~illi~~P~~lfPy~R~ii~~l~~~~GFppl~L~pIdF~~LY~~~~~q~~~~~~~ 150 (153)
T 1qyn_A 79 QQGGIFSIAGIEGTQMAHCLGAYCPNILFPYARECITSMVSRGTFPQLNLAPVNFDALFMNYLQQQAGEGTE 150 (153)
T ss_dssp EEEEEEEEESCCHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTCCCCCCCCCCHHHHHHHHHC--------
T ss_pred EEEEEEEEECCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 988999993062767657677338388878999999999984699985678758999999999998764101
No 2
>1fx3_A SECB, protein-export protein SECB; protein trasnport, translocation, transport protein; 2.50A {Haemophilus influenzae} SCOP: d.33.1.1 PDB: 1ozb_A
Probab=100.00 E-value=0 Score=322.28 Aligned_cols=146 Identities=27% Similarity=0.557 Sum_probs=135.1
Q ss_pred CCCCCCHHHHEEEHHHCCCCCCHHHHHHHHHCCCCEEEEEEEECCCCCCCCEEEEEEEEEECCCC--CCCCCEEEEEEEE
Q ss_conf 11301012301301110378871677643101584158886512121465405799998404676--6543012577546
Q gi|254780817|r 4 KQKQAFTILNQYIKDFSFESPNAPHCFFDIQNQQPTIKINVQVNANTISGADFDVILSFDIEAKN--NDKVIFRLELAYS 81 (152)
Q Consensus 4 ~~~~~~~I~~qYIKDLSFE~P~ap~~f~~~~~~~p~~~i~i~i~~~~l~~~~~EV~l~l~~~ak~--~~~~~f~~Ei~ya 81 (152)
..+|+|+|+++||||||||+||+|.+|. .+|.|++++++|+++++++++.|||.|+++++++. +++++|++|++||
T Consensus 13 ~~~p~f~I~~~YiKDlSFE~Pnap~~f~--~~~~p~~~i~vdi~s~~l~~~~~Ev~l~l~~~~~~~~~~~~~F~~E~~ya 90 (169)
T 1fx3_A 13 EQQPVLQIQRIYVKDVSFEAPNLPHIFQ--QEWKPKLGFDLSTETTQVGDDLYEVVLNISVETTLEDSGDVAFICEVKQA 90 (169)
T ss_dssp --CCEEEEEEEEEEEEEEECTTHHHHTS--SCCCCCCCCCEEEEEEEEETTEEEEEEEEEECCCCTTTCCCSCEEEEEEE
T ss_pred CCCCCEEEEEEEEEECCCCCCCCHHHHC--CCCCCCEEEEEECCEEECCCCCEEEEEEEEEEECCCCCCCCEEEEEEEEE
T ss_conf 3498568764887502533899756755--45588467888411220577731899999986313556773499998799
Q ss_pred EEEEECCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 8999758871034446663045534178999999999738998866055398999999999998642014
Q gi|254780817|r 82 GILRILDCPQEHISQILFVECPQLLFPFVRQIISNTIRDGGFPPLVIDTIDFLKLFQQEKSLIKNKEGLM 151 (152)
Q Consensus 82 gif~i~~~~~~~l~~illv~~P~~lfP~~R~ii~~~~~~~Gfp~l~l~~IdF~~LY~~~~~~~~~~~~~~ 151 (152)
|+|++.++++++++++|+|+||++||||||++|++++++||||||+|+||||++||++|++++++++...
T Consensus 91 gif~i~~~~~e~~~~~l~i~~P~~lFPy~R~iis~l~~~gGFppl~L~pIdF~~LY~~~~~~~~~~~~~~ 160 (169)
T 1fx3_A 91 GVFTISGLEDVQMAHCLTSQCPNMLFPYARELVSNLVNRGTFPALNLSPVNFDALFVEYMNRQQAENAEE 160 (169)
T ss_dssp EEEEEESCCHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHHC---
T ss_pred EEEEEECCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 9999603866664134412572888789999999999846999746786589999999999988860457
No 3
>2k8f_B Cellular tumor antigen P53; complex of P53 and P300, acetylation, bromodomain, cell cycle, chromosomal rearrangement, citrullination; NMR {Homo sapiens}
Probab=20.03 E-value=22 Score=15.69 Aligned_cols=24 Identities=29% Similarity=0.335 Sum_probs=19.7
Q ss_pred HHHCCCCCCHHHHHHHHHCCCCEE
Q ss_conf 111037887167764310158415
Q gi|254780817|r 17 KDFSFESPNAPHCFFDIQNQQPTI 40 (152)
Q Consensus 17 KDLSFE~P~ap~~f~~~~~~~p~~ 40 (152)
-|||.|-|-+++.|...++-.|.-
T Consensus 6 sdlsiepPLSQETFS~LWkLLP~n 29 (39)
T 2k8f_B 6 SDPSVEPPLSQETFSDLWKLLPEN 29 (39)
T ss_dssp CCSSCCCCCSCHHHHHHHHTCSSS
T ss_pred CCCCCCCCCCHHHHHHHHHHCCCC
T ss_conf 554547872167899999867843
No 4
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=14.00 E-value=57 Score=13.21 Aligned_cols=35 Identities=14% Similarity=0.090 Sum_probs=26.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHH
Q ss_conf 0455341789999999997389988660553989999
Q gi|254780817|r 101 ECPQLLFPFVRQIISNTIRDGGFPPLVIDTIDFLKLF 137 (152)
Q Consensus 101 ~~P~~lfP~~R~ii~~~~~~~Gfp~l~l~~IdF~~LY 137 (152)
-+|-+.|-|+| +.++++++|-....+.+.|+..|-
T Consensus 336 ~~~YiqYa~aR--~~SIlrk~~~~~~~~~~~~~~~l~ 370 (464)
T 3fnr_A 336 PVYYINYAHAR--IHQVFAKAGKKIDDVMKADLQSLN 370 (464)
T ss_dssp HHHHHHHHHHH--HHHHHHHTTCCTTTSTTCCCTTCC
T ss_pred HHHHHHHHHHH--HHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 47899999999--999999715343311125542189
No 5
>2f9i_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}
Probab=13.83 E-value=55 Score=13.31 Aligned_cols=57 Identities=18% Similarity=0.293 Sum_probs=37.7
Q ss_pred CHHHHHHHHHCCCHH--HHH-HHHHHHHHHHHHCCCCCCCC-----CCCCHHHHHHHHHHHHHHHHH
Q ss_conf 103444666304553--417-89999999997389988660-----553989999999999986420
Q gi|254780817|r 91 QEHISQILFVECPQL--LFP-FVRQIISNTIRDGGFPPLVI-----DTIDFLKLFQQEKSLIKNKEG 149 (152)
Q Consensus 91 ~~~l~~illv~~P~~--lfP-~~R~ii~~~~~~~Gfp~l~l-----~~IdF~~LY~~~~~~~~~~~~ 149 (152)
.++|++-+.| ||.= -|+ -+|+=|..++-++.|-.+.. +|.+|.. |..|......+-|
T Consensus 42 ~~dl~~n~~V-Cp~C~~H~rl~areRi~~L~D~gsf~Ei~~~~~~~DpL~f~~-Y~~rl~~a~~ktg 106 (285)
T 2f9i_B 42 TKELAENLNV-CFNCDHHIALTAYKRIEAISDEGSFTEFDKGMTSANPLDFPS-YLEKIEKDQQKTG 106 (285)
T ss_dssp HHHHHHTTTB-CTTTCCBCCCCHHHHHHHTSCTTCCEEESTTCEECCTTCCTT-HHHHHHHHHHHHC
T ss_pred HHHHHHHCCC-CCCCCCCCCCCHHHHHHHHCCCCCEEEECCCCCCCCCCCCCC-CCCCHHHHHHCCC
T ss_conf 9999984888-909979986599999999808996498147656788555433-1232277885249
No 6
>3let_A Adenosine monophosphate-protein transferase VOPS; ampylation, FIC domain, type III, effector, T3SS, nucleotidyltransferase, virulence; 1.80A {Vibrio parahaemolyticus}
Probab=11.81 E-value=71 Score=12.66 Aligned_cols=18 Identities=22% Similarity=0.689 Sum_probs=12.9
Q ss_pred HHHHH--HHHHCCCCCCCCC
Q ss_conf 99999--9973899886605
Q gi|254780817|r 112 QIISN--TIRDGGFPPLVID 129 (152)
Q Consensus 112 ~ii~~--~~~~~Gfp~l~l~ 129 (152)
|.+.+ ++++.||||+.+.
T Consensus 286 RlL~~l~~l~~~g~~pi~i~ 305 (314)
T 3let_A 286 RMLYAIAELRNDSFNPLAMN 305 (314)
T ss_dssp HHHHHHHHHHTTCCCCCCHH
T ss_pred HHHHHHHHHHHCCCCCEEEE
T ss_conf 99999999984799972411
No 7
>3n72_A Putative activator of HSP90; malaria, structural genomics, heat shock, structural genomic consortium, SGC, chaperone activator; 1.77A {Plasmodium falciparum}
Probab=10.83 E-value=49 Score=13.61 Aligned_cols=113 Identities=14% Similarity=0.183 Sum_probs=54.2
Q ss_pred HEEEHHHCCCCCCHHHHHHHHHCCCCEEEEEEEECCCCCCCC---EEEEEEEEEECCCC--CCCCCEEEEEEEEEEEEEC
Q ss_conf 013011103788716776431015841588865121214654---05799998404676--6543012577546899975
Q gi|254780817|r 13 NQYIKDFSFESPNAPHCFFDIQNQQPTIKINVQVNANTISGA---DFDVILSFDIEAKN--NDKVIFRLELAYSGILRIL 87 (152)
Q Consensus 13 ~qYIKDLSFE~P~ap~~f~~~~~~~p~~~i~i~i~~~~l~~~---~~EV~l~l~~~ak~--~~~~~f~~Ei~yagif~i~ 87 (152)
..-+.++++|.++....+ .. +++.=+......+.. .||..+++..++.. ++.. ...|-++|.
T Consensus 31 kelL~~~~~e~~~~~~~v---~~----vkv~GdAsV~~RKGK~i~~ydl~i~l~w~g~~~~~~~~------~v~G~i~IP 97 (164)
T 3n72_A 31 KYNLSNLKIEKEDLTIYF---DN----LQVSGNACVSIRKGKQINSFEYIIKFEWLYSKKKEGKD------YFGGSVEIP 97 (164)
T ss_dssp HHHHHTCEEC----CEEE---EE----EEEEEEEEEEEETTEEEEEEEEEEEEEEEEC-------------CEEEEEEEE
T ss_pred HHHHCCCEEECCCCEEEE---EE----EEEEEEEEEEEECCCEEEEEEEEEEEEEEEEECCCCCC------EEEEEEECC
T ss_conf 998425778459948999---99----99985899998669489878999999999998569984------889999843
Q ss_pred CCCCH---HHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH
Q ss_conf 88710---34446663045534178999999999738998866055398999999
Q gi|254780817|r 88 DCPQE---HISQILFVECPQLLFPFVRQIISNTIRDGGFPPLVIDTIDFLKLFQQ 139 (152)
Q Consensus 88 ~~~~~---~l~~illv~~P~~lfP~~R~ii~~~~~~~Gfp~l~l~~IdF~~LY~~ 139 (152)
++..+ +.+--+.+.+ +-==+..++....++++.|.|.|.=.=-.|.+.-.+
T Consensus 98 els~e~~dedd~~i~v~~-~~~~~~~~~~~~~~~k~~~~~~ire~L~~f~~eL~e 151 (164)
T 3n72_A 98 DFSTFSLEENDYAINIER-TDESENLRFIYDSILKKEGKEKIKECLKNFQEDLLK 151 (164)
T ss_dssp EEETTHHHHTCCCCEEC---CCSHHHHHHHHHTTTTHHHHHHHHHHTTHHHHHHH
T ss_pred CCCCCCCCCCCEEEEEEE-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 237897766634999998-579811778999999986589999999999999987
No 8
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=9.73 E-value=71 Score=12.69 Aligned_cols=53 Identities=8% Similarity=0.080 Sum_probs=27.9
Q ss_pred HEEEHHHCCCCCCHHHHHHHHHCCCCEEEEEEEECCCCCCCCEEEEEEEEEEC
Q ss_conf 01301110378871677643101584158886512121465405799998404
Q gi|254780817|r 13 NQYIKDFSFESPNAPHCFFDIQNQQPTIKINVQVNANTISGADFDVILSFDIE 65 (152)
Q Consensus 13 ~qYIKDLSFE~P~ap~~f~~~~~~~p~~~i~i~i~~~~l~~~~~EV~l~l~~~ 65 (152)
+.|.=+|..+..|-|..+....+..-+.++|+.--...-.++...+.+.+.+.
T Consensus 2 T~f~~~L~I~~~Dr~GlL~dIt~~is~~~inI~~i~~~~~~~~~~~~i~v~V~ 54 (88)
T 2ko1_A 2 TDFLAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIFVK 54 (88)
T ss_dssp CCEEEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECSSEEEEEEEEEES
T ss_pred CEEEEEEEEEEECCCCHHHHHHHHHHHCCCEEEEEEEEECCCEEEEEEEEEEC
T ss_conf 06799999999778887999999998779739999997049979999999998
No 9
>2eqo_A TNF receptor-associated factor 3-interacting protein 1; STN_TRAF3IP1_ND domain, interleukin 13 receptor alpha 1-binding protein-1 [HOMO sapiens]; NMR {Homo sapiens}
Probab=9.71 E-value=85 Score=12.22 Aligned_cols=30 Identities=23% Similarity=0.396 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCC--CCCHHHH
Q ss_conf 17899999999973899886605--5398999
Q gi|254780817|r 107 FPFVRQIISNTIRDGGFPPLVID--TIDFLKL 136 (152)
Q Consensus 107 fP~~R~ii~~~~~~~Gfp~l~l~--~IdF~~L 136 (152)
|-|+..||+.+++..||..-... -.|+..+
T Consensus 39 FRFLhDIv~~v~~~TGf~~gl~~~~el~s~~i 70 (140)
T 2eqo_A 39 FRYLHDIITEVIRMTGFMKGLYTDAEMKSDNV 70 (140)
T ss_dssp HHHHHHHHHHHHHHTCSSTTTSCHHHHCGGGC
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCC
T ss_conf 28999999999998678756889778623202
No 10
>1iie_A Protein (HLA-DR antigens associated invariant chain); major histocompatibility complex, antigen processing, oligomerization, chaperonin; NMR {Homo sapiens} SCOP: a.109.1.1
Probab=8.16 E-value=42 Score=14.04 Aligned_cols=31 Identities=13% Similarity=0.382 Sum_probs=24.3
Q ss_pred CCCCHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 8871034446663045534178999999999
Q gi|254780817|r 88 DCPQEHISQILFVECPQLLFPFVRQIISNTI 118 (152)
Q Consensus 88 ~~~~~~l~~illv~~P~~lfP~~R~ii~~~~ 118 (152)
|..++++..+|+-.-|+..||-+.+.|.+=+
T Consensus 3 N~tedqVk~LL~~~~P~k~~P~ln~sf~~NL 33 (75)
T 1iie_A 3 NMTEDHVMHLLQNADPLKVYPPLKGSFPENL 33 (75)
T ss_dssp SSCHHHHHHHHHHHCTTCCCCCCCSCHHHHH
T ss_pred CCHHHHHHHHHHCCCHHHHCHHHHHHHHHHH
T ss_conf 5179999999966671122435677899999
Done!