RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780817|ref|YP_003065230.1| preprotein translocase subunit SecB [Candidatus Liberibacter asiaticus str. psy62] (152 letters) >1qyn_A Protein-export protein SECB; tetramer, greek KEY beta sheet, chaperone; 2.35A {Escherichia coli} (A:) Length = 153 Score = 144 bits (365), Expect = 4e-36 Identities = 40/140 (28%), Positives = 71/140 (50%), Gaps = 2/140 (1%) Query: 2 EKKQKQAFTILNQYIKDFSFESPNAPHCFFDIQNQQPTIKINVQVNANTISGADFDVILS 61 + + F I Y KD SFE+PNAPH F ++ QP +K+++ ++ ++ ++V+L Sbjct: 4 QNNTEMTFQIQRIYTKDISFEAPNAPHVF--QKDWQPEVKLDLDTASSQLADDVYEVVLR 61 Query: 62 FDIEAKNNDKVIFRLELAYSGILRILDCPQEHISQILFVECPQLLFPFVRQIISNTIRDG 121 + A ++ F E+ GI I ++ L CP +LFP+ R+ I++ + G Sbjct: 62 VTVTASLGEETAFLCEVQQGGIFSIAGIEGTQMAHCLGAYCPNILFPYARECITSMVSRG 121 Query: 122 GFPPLVIDTIDFLKLFQQEK 141 FP L + ++F LF Sbjct: 122 TFPQLNLAPVNFDALFMNYL 141 >1fx3_A SECB, protein-export protein SECB; protein trasnport, translocation, transport protein; 2.50A {Haemophilus influenzae} (A:) Length = 169 Score = 141 bits (357), Expect = 4e-35 Identities = 39/142 (27%), Positives = 72/142 (50%), Gaps = 4/142 (2%) Query: 2 EKKQKQAFTILNQYIKDFSFESPNAPHCFFDIQNQQPTIKINVQVNANTISGADFDVILS 61 ++Q+ I Y+KD SFE+PN PH F Q +P + ++ + ++V+L+ Sbjct: 11 TEEQQPVLQIQRIYVKDVSFEAPNLPHIF--QQEWKPKLGFDLSTETTQVGDDLYEVVLN 68 Query: 62 FDIEAK--NNDKVIFRLELAYSGILRILDCPQEHISQILFVECPQLLFPFVRQIISNTIR 119 +E ++ V F E+ +G+ I ++ L +CP +LFP+ R+++SN + Sbjct: 69 ISVETTLEDSGDVAFICEVKQAGVFTISGLEDVQMAHCLTSQCPNMLFPYARELVSNLVN 128 Query: 120 DGGFPPLVIDTIDFLKLFQQEK 141 G FP L + ++F LF + Sbjct: 129 RGTFPALNLSPVNFDALFVEYM 150 >2d9q_B Granulocyte colony-stimulating factor receptor; cytokine, ligand-receptor complex, signaling protein/cytokine complex; HET: NAG; 2.80A {Homo sapiens} (B:101-201) Length = 101 Score = 25.7 bits (56), Expect = 2.5 Identities = 7/44 (15%), Positives = 11/44 (25%) Query: 22 ESPNAPHCFFDIQNQQPTIKINVQVNANTISGADFDVILSFDIE 65 HC ++ + + V A G L D Sbjct: 55 PKDGQSHCSIPRKHLLLYQNMGIWVQAENALGTSMSPQLCLDPM 98 >2z7x_B TOLL-like receptor 1, variable lymphocyte receptor B; TLR2, TLR1, lipopeptide, innate immunity, glycoprotein, immune response, inflammatory response, leucine-rich repeat, membrane; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} (B:1-484) Length = 484 Score = 25.4 bits (53), Expect = 3.5 Identities = 6/47 (12%), Positives = 13/47 (27%), Gaps = 9/47 (19%) Query: 84 LRILDCPQEHISQILFVECPQLLFPFVRQII--SNTIRDGGFPPLVI 128 ++D + + + P+ L + N I I Sbjct: 2 EFLVDRSKNGLIHV-----PKDLSQKTTILNISQNYIS--ELWTSDI 41 >1axi_B HGHBP, growth hormone receptor; complex (hormone/receptor); 2.10A {Homo sapiens} (B:1-132) Length = 132 Score = 25.4 bits (55), Expect = 3.7 Identities = 5/38 (13%), Positives = 14/38 (36%), Gaps = 4/38 (10%) Query: 28 HCFFDIQNQQPTIKINVQVNANTISGADFDVILSFDIE 65 C+F+ I +++ +N + F ++ Sbjct: 93 SCYFNSSFTSIAIPYCIKLTSNGGTVD----EKCFSVD 126 >2b1e_A Exocyst complex component EXO70; tethering complex, endocytosis/exocytosis complex; 2.00A {Saccharomyces cerevisiae} PDB: 2b7m_A 2pfv_A (A:289-458) Length = 170 Score = 25.0 bits (54), Expect = 5.1 Identities = 5/32 (15%), Positives = 13/32 (40%), Gaps = 3/32 (9%) Query: 109 FVRQIISNT---IRDGGFPPLVIDTIDFLKLF 137 + + ++ + G +DT+ L+ F Sbjct: 4 RIIKKANSISTIPSNNGVTEATVDTMSRLRKF 35 >2r47_A Uncharacterized protein MTH_862; unknown function, structural genomics, APC5901, PSI-2, protein structure initiative; 1.88A {Methanothermobacterthermautotrophicus str} (A:) Length = 157 Score = 24.7 bits (54), Expect = 5.2 Identities = 9/40 (22%), Positives = 16/40 (40%), Gaps = 1/40 (2%) Query: 81 SGILRILDCPQEHISQILFVECPQLLFPFVRQIISNTIRD 120 L + + +I F P + PF Q+ + +RD Sbjct: 13 KEHLGVFREAVKDAERIGFAGVPGVXTPFA-QLFAYAVRD 51 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.325 0.142 0.411 Gapped Lambda K H 0.267 0.0325 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 1,117,297 Number of extensions: 47596 Number of successful extensions: 156 Number of sequences better than 10.0: 1 Number of HSP's gapped: 154 Number of HSP's successfully gapped: 11 Length of query: 152 Length of database: 4,956,049 Length adjustment: 81 Effective length of query: 71 Effective length of database: 2,217,844 Effective search space: 157466924 Effective search space used: 157466924 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 51 (24.6 bits)