RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780817|ref|YP_003065230.1| preprotein translocase subunit SecB [Candidatus Liberibacter asiaticus str. psy62] (152 letters) >1qyn_A Protein-export protein SECB; tetramer, greek KEY beta sheet, chaperone; 2.35A {Escherichia coli} SCOP: d.33.1.1 Length = 153 Score = 126 bits (319), Expect = 2e-30 Identities = 40/140 (28%), Positives = 71/140 (50%), Gaps = 2/140 (1%) Query: 2 EKKQKQAFTILNQYIKDFSFESPNAPHCFFDIQNQQPTIKINVQVNANTISGADFDVILS 61 + + F I Y KD SFE+PNAPH F ++ QP +K+++ ++ ++ ++V+L Sbjct: 4 QNNTEMTFQIQRIYTKDISFEAPNAPHVF--QKDWQPEVKLDLDTASSQLADDVYEVVLR 61 Query: 62 FDIEAKNNDKVIFRLELAYSGILRILDCPQEHISQILFVECPQLLFPFVRQIISNTIRDG 121 + A ++ F E+ GI I ++ L CP +LFP+ R+ I++ + G Sbjct: 62 VTVTASLGEETAFLCEVQQGGIFSIAGIEGTQMAHCLGAYCPNILFPYARECITSMVSRG 121 Query: 122 GFPPLVIDTIDFLKLFQQEK 141 FP L + ++F LF Sbjct: 122 TFPQLNLAPVNFDALFMNYL 141 >1fx3_A SECB, protein-export protein SECB; protein trasnport, translocation, transport protein; 2.50A {Haemophilus influenzae} SCOP: d.33.1.1 PDB: 1ozb_A Length = 169 Score = 118 bits (297), Expect = 5e-28 Identities = 39/142 (27%), Positives = 73/142 (51%), Gaps = 4/142 (2%) Query: 2 EKKQKQAFTILNQYIKDFSFESPNAPHCFFDIQNQQPTIKINVQVNANTISGADFDVILS 61 ++Q+ I Y+KD SFE+PN PH F Q +P + ++ + ++V+L+ Sbjct: 11 TEEQQPVLQIQRIYVKDVSFEAPNLPHIFQ--QEWKPKLGFDLSTETTQVGDDLYEVVLN 68 Query: 62 FDIEA--KNNDKVIFRLELAYSGILRILDCPQEHISQILFVECPQLLFPFVRQIISNTIR 119 +E +++ V F E+ +G+ I ++ L +CP +LFP+ R+++SN + Sbjct: 69 ISVETTLEDSGDVAFICEVKQAGVFTISGLEDVQMAHCLTSQCPNMLFPYARELVSNLVN 128 Query: 120 DGGFPPLVIDTIDFLKLFQQEK 141 G FP L + ++F LF + Sbjct: 129 RGTFPALNLSPVNFDALFVEYM 150 >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 29.6 bits (65), Expect = 0.28 Identities = 8/23 (34%), Positives = 13/23 (56%), Gaps = 2/23 (8%) Query: 5 QKQAFTILNQYIKDFSFESPNAP 27 +KQA L +K ++ +S AP Sbjct: 18 EKQALKKLQASLKLYADDS--AP 38 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 25.3 bits (55), Expect = 6.1 Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 8/35 (22%) Query: 108 PFVRQII---SNTIRDGGFPPLVIDTIDFLKLFQQ 139 V +I + T+ L+ T+D K+F Q Sbjct: 182 VLVGDLIKFSAETLS-----ELIRTTLDAEKVFTQ 211 >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein/lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A Length = 415 Score = 25.1 bits (53), Expect = 6.8 Identities = 12/52 (23%), Positives = 18/52 (34%) Query: 36 QQPTIKINVQVNANTISGADFDVILSFDIEAKNNDKVIFRLELAYSGILRIL 87 QQP VQ A + G D V+ + V ++L +L Sbjct: 57 QQPGSAQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVL 108 >2w2g_A Non-structural protein 3; thiol protease, RNA replication, viral replicase, RNA-binding, zinc-finger, metal-binding, transmembrane; 2.22A {Sars coronavirus} PDB: 2wct_A 2jwi_A 2jwj_A 2jzf_A 2rnk_A 2jzd_A 2jze_A Length = 264 Score = 25.0 bits (54), Expect = 8.1 Identities = 8/40 (20%), Positives = 20/40 (50%) Query: 111 RQIISNTIRDGGFPPLVIDTIDFLKLFQQEKSLIKNKEGL 150 R+++++ P+ +D + Q++ IK +EG+ Sbjct: 146 REMLAHAEETRKLMPICMDVRAIMATIQRKYKGIKIQEGI 185 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.325 0.142 0.411 Gapped Lambda K H 0.267 0.0494 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 1,291,946 Number of extensions: 57388 Number of successful extensions: 174 Number of sequences better than 10.0: 1 Number of HSP's gapped: 173 Number of HSP's successfully gapped: 12 Length of query: 152 Length of database: 5,693,230 Length adjustment: 84 Effective length of query: 68 Effective length of database: 3,656,734 Effective search space: 248657912 Effective search space used: 248657912 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 52 (24.4 bits)