RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780817|ref|YP_003065230.1| preprotein translocase subunit
SecB [Candidatus Liberibacter asiaticus str. psy62]
         (152 letters)



>1qyn_A Protein-export protein SECB; tetramer, greek KEY beta sheet,
           chaperone; 2.35A {Escherichia coli} SCOP: d.33.1.1
          Length = 153

 Score =  126 bits (319), Expect = 2e-30
 Identities = 40/140 (28%), Positives = 71/140 (50%), Gaps = 2/140 (1%)

Query: 2   EKKQKQAFTILNQYIKDFSFESPNAPHCFFDIQNQQPTIKINVQVNANTISGADFDVILS 61
           +   +  F I   Y KD SFE+PNAPH F   ++ QP +K+++   ++ ++   ++V+L 
Sbjct: 4   QNNTEMTFQIQRIYTKDISFEAPNAPHVF--QKDWQPEVKLDLDTASSQLADDVYEVVLR 61

Query: 62  FDIEAKNNDKVIFRLELAYSGILRILDCPQEHISQILFVECPQLLFPFVRQIISNTIRDG 121
             + A   ++  F  E+   GI  I       ++  L   CP +LFP+ R+ I++ +  G
Sbjct: 62  VTVTASLGEETAFLCEVQQGGIFSIAGIEGTQMAHCLGAYCPNILFPYARECITSMVSRG 121

Query: 122 GFPPLVIDTIDFLKLFQQEK 141
            FP L +  ++F  LF    
Sbjct: 122 TFPQLNLAPVNFDALFMNYL 141


>1fx3_A SECB, protein-export protein SECB; protein trasnport,
           translocation, transport protein; 2.50A {Haemophilus
           influenzae} SCOP: d.33.1.1 PDB: 1ozb_A
          Length = 169

 Score =  118 bits (297), Expect = 5e-28
 Identities = 39/142 (27%), Positives = 73/142 (51%), Gaps = 4/142 (2%)

Query: 2   EKKQKQAFTILNQYIKDFSFESPNAPHCFFDIQNQQPTIKINVQVNANTISGADFDVILS 61
            ++Q+    I   Y+KD SFE+PN PH F   Q  +P +  ++      +    ++V+L+
Sbjct: 11  TEEQQPVLQIQRIYVKDVSFEAPNLPHIFQ--QEWKPKLGFDLSTETTQVGDDLYEVVLN 68

Query: 62  FDIEA--KNNDKVIFRLELAYSGILRILDCPQEHISQILFVECPQLLFPFVRQIISNTIR 119
             +E   +++  V F  E+  +G+  I       ++  L  +CP +LFP+ R+++SN + 
Sbjct: 69  ISVETTLEDSGDVAFICEVKQAGVFTISGLEDVQMAHCLTSQCPNMLFPYARELVSNLVN 128

Query: 120 DGGFPPLVIDTIDFLKLFQQEK 141
            G FP L +  ++F  LF +  
Sbjct: 129 RGTFPALNLSPVNFDALFVEYM 150


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 29.6 bits (65), Expect = 0.28
 Identities = 8/23 (34%), Positives = 13/23 (56%), Gaps = 2/23 (8%)

Query: 5  QKQAFTILNQYIKDFSFESPNAP 27
          +KQA   L   +K ++ +S  AP
Sbjct: 18 EKQALKKLQASLKLYADDS--AP 38


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 25.3 bits (55), Expect = 6.1
 Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 8/35 (22%)

Query: 108 PFVRQII---SNTIRDGGFPPLVIDTIDFLKLFQQ 139
             V  +I   + T+       L+  T+D  K+F Q
Sbjct: 182 VLVGDLIKFSAETLS-----ELIRTTLDAEKVFTQ 211


>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein/lipoprotein
           complex; 1.50A {Escherichia coli} SCOP: b.68.4.1
           c.51.2.1 PDB: 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
          Length = 415

 Score = 25.1 bits (53), Expect = 6.8
 Identities = 12/52 (23%), Positives = 18/52 (34%)

Query: 36  QQPTIKINVQVNANTISGADFDVILSFDIEAKNNDKVIFRLELAYSGILRIL 87
           QQP     VQ  A +  G D  V+         +  V ++L         +L
Sbjct: 57  QQPGSAQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVL 108


>2w2g_A Non-structural protein 3; thiol protease, RNA replication, viral
           replicase, RNA-binding, zinc-finger, metal-binding,
           transmembrane; 2.22A {Sars coronavirus} PDB: 2wct_A
           2jwi_A 2jwj_A 2jzf_A 2rnk_A 2jzd_A 2jze_A
          Length = 264

 Score = 25.0 bits (54), Expect = 8.1
 Identities = 8/40 (20%), Positives = 20/40 (50%)

Query: 111 RQIISNTIRDGGFPPLVIDTIDFLKLFQQEKSLIKNKEGL 150
           R+++++        P+ +D    +   Q++   IK +EG+
Sbjct: 146 REMLAHAEETRKLMPICMDVRAIMATIQRKYKGIKIQEGI 185


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.325    0.142    0.411 

Gapped
Lambda     K      H
   0.267   0.0494    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,291,946
Number of extensions: 57388
Number of successful extensions: 174
Number of sequences better than 10.0: 1
Number of HSP's gapped: 173
Number of HSP's successfully gapped: 12
Length of query: 152
Length of database: 5,693,230
Length adjustment: 84
Effective length of query: 68
Effective length of database: 3,656,734
Effective search space: 248657912
Effective search space used: 248657912
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.4 bits)