HHsearch alignment for GI: 254780818 and conserved domain: COG0349
>COG0349 Rnd Ribonuclease D [Translation, ribosomal structure and biogenesis].
Probab=98.35 E-value=1.5e-06 Score=60.91 Aligned_cols=134 Identities=22% Similarity=0.259 Sum_probs=84.1
Q ss_pred EEEEECCCCCCCCCCCE--EEEEEEEEEECCEECCCEEEEEECCCCCCCCHHHEEECCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 89998467888888888--9999999999998803137989858882288657242021012322485210023447775
Q gi|254780818|r 9 KIVFDIETTGLDSKNDR--IIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDF 86 (245)
Q Consensus 9 ~iv~D~ETTGl~~~~d~--Iieigav~i~~~~~~~~~f~~~i~P~~~~i~~~~~~ihGIt~~~l~~~p~f~ev~~~f~~f 86 (245)
T Consensus 19 ~iAIDTEf~r~~t~~p~LcLIQi-----~~----~e~-~~lIdp~~-~~---------------~d~~~l-------~~L 65 (361)
T COG0349 19 AIAIDTEFMRLRTYYPRLCLIQI-----SD----GEG-ASLIDPLA-GI---------------LDLPPL-------VAL 65 (361)
T ss_pred EEEEECCCCCCCCCCCCEEEEEE-----EC----CCC-CEEECCCC-CC---------------CCCCHH-------HHH
T ss_conf 07983222466436883379998-----44----888-66862265-54---------------666369-------998
Q ss_pred HHCCCCEEEEECCCCCCCEEEECHHCCCCCCCCCCHHCCCHHCCCCCCCCCCCCHHHHHHHH-CCCCCCC----------
Q ss_conf 30023202310232243112100000112222100001100000001776422237899971-8754555----------
Q gi|254780818|r 87 FNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRY-GITISHR---------- 155 (245)
Q Consensus 87 i~~~~~~lVaHNa~FD~~fL~~el~r~~~~~~~~~~~iDTl~lar~~~p~~~~~L~~l~~~~-~i~~~~r---------- 155 (245)
T Consensus 66 l~d~~v~KIfHaa~~DL~~l~~~~---g~~---p~plfdTqiAa~l~g~~~~~gl~~Lv~~ll~v~ldK~~q~SDW~~RP 139 (361)
T COG0349 66 LADPNVVKIFHAARFDLEVLLNLF---GLL---PTPLFDTQIAAKLAGFGTSHGLADLVEELLGVELDKSEQRSDWLARP 139 (361)
T ss_pred HCCCCEEEEECCCCCCHHHHHHHC---CCC---CCCHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf 628760255025635199999861---888---77346899999980986323299999999688536444546555579
Q ss_pred ----CCCCCHHHHHHHHHHHHHHHHCCCCC
Q ss_conf ----66640269999999999997305766
Q gi|254780818|r 156 ----SKHGALLDSHLLSDVYIKMMVGGSQI 181 (245)
Q Consensus 156 ----~~H~Al~Da~~~a~v~~~ll~g~~q~ 181 (245)
T Consensus 140 Ls~~Ql~YAa~DV~yL~~l~~~L~~~L~~~ 169 (361)
T COG0349 140 LSEAQLEYAAADVEYLLPLYDKLTEELARE 169 (361)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 999999999999999999999999999874