HHsearch alignment for GI: 254780818 and conserved domain: COG0417
>COG0417 PolB DNA polymerase elongation subunit (family B) [DNA replication, recombination, and repair].
Probab=97.39 E-value=0.00074 Score=44.06 Aligned_cols=151 Identities=19% Similarity=0.162 Sum_probs=84.9
Q ss_pred CCCEEEEECCCCCCC-----CCCCEEEEEEEEEEECCEECCCEEEEEECCCCCCCCHHHEEECCCCCCCCCCCCCCCHHH
Q ss_conf 775899984678888-----888889999999999998803137989858882288657242021012322485210023
Q gi|254780818|r 6 KMRKIVFDIETTGLD-----SKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIF 80 (245)
Q Consensus 6 ~mr~iv~D~ETTGl~-----~~~d~Iieigav~i~~~~~~~~~f~~~i~P~~~~i~~~~~~ihGIt~~~l~~~p~f~ev~ 80 (245)
T Consensus 153 ~l~~la~DiE~~~~~~~~~~~~~d~~~~i~~~~~~~~~~~-------~~~~~~~-------~~~~~---v~~~~~e~e~l 215 (792)
T COG0417 153 PLRVLAFDIETLSEPGKFPDGEKDPIIMISYAIEAEGGLI-------EVFIYTS-------GEGFS---VEVVISEAELL 215 (792)
T ss_pred CCCEEEEEEEECCCCCCCCCCCCCCEEEEEEEECCCCCCC-------CCCCCCC-------CCCCC---EEEECCHHHHH
T ss_conf 8754799503105777889877786269999704677764-------4432235-------67763---48725879999
Q ss_pred HHHHHHHHCCC-CEEEEECCC-CCCCEEEECHHCCCCCCC---------------CC--C-HHCCCHHCCC-CCCCCCCC
Q ss_conf 44777530023-202310232-243112100000112222---------------10--0-0011000000-01776422
Q gi|254780818|r 81 SEFWDFFNEQN-AEWIAHNAK-FDVGFINAELQRINKDPL---------------DP--S-RIIDTLSIAR-RKHPSSRN 139 (245)
Q Consensus 81 ~~f~~fi~~~~-~~lVaHNa~-FD~~fL~~el~r~~~~~~---------------~~--~-~~iDTl~lar-~~~p~~~~ 139 (245)
T Consensus 216 ~~~~~~i~~~dPdVIvgyn~~~fd~pyl~~Ra~~lgi~~~~gr~~~~~~~~~~~~~~~~Gr~~iDl~~~~~~~~~~~~~y 295 (792)
T COG0417 216 ERFVELIREYDPDVIVGYNGDNFDWPYLAERAERLGIPLRLGRDGSELRVRKSGFSSQVGRLHIDLYPALRRRPLNLKSY 295 (792)
T ss_pred HHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCCEEEEEHHHHHHHCCCCCCCE
T ss_conf 99999985029899998367777738999999981998511356653200212544557716741066542032355632
Q ss_pred CHHHHHHHHC-CCC-C------------------CCCCCCCHHHHHHHHHHHHH
Q ss_conf 2378999718-754-5------------------55666402699999999999
Q gi|254780818|r 140 DLNSLCKRYG-ITI-S------------------HRSKHGALLDSHLLSDVYIK 173 (245)
Q Consensus 140 ~L~~l~~~~~-i~~-~------------------~r~~H~Al~Da~~~a~v~~~ 173 (245)
T Consensus 296 sl~~v~~~~l~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 349 (792)
T COG0417 296 SLEAVSEALLGEGKREDIPYDSMEEIWPDWADSKLRLLLYNLSDADLVLRILLK 349 (792)
T ss_pred EHHHHHHHHCCCCCHHCCCCCHHHHCCCCCCCCHHHHHHHCCCHHHHHHHHHHH
T ss_conf 434677664133522005620133304235510768888341078899999866