HHsearch alignment for GI: 254780818 and conserved domain: COG2176
>COG2176 PolC DNA polymerase III, alpha subunit (gram-positive type) [DNA replication, recombination, and repair].
Probab=100.00 E-value=0 Score=309.83 Aligned_cols=170 Identities=35% Similarity=0.624 Sum_probs=157.1
Q ss_pred EEEEECCCCCCCCCCCEEEEEEEEEEECCEECCCEEEEEECCCCCCCCHHHEEECCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 89998467888888888999999999999880313798985888228865724202101232248521002344777530
Q gi|254780818|r 9 KIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFN 88 (245)
Q Consensus 9 ~iv~D~ETTGl~~~~d~Iieigav~i~~~~~~~~~f~~~i~P~~~~i~~~~~~ihGIt~~~l~~~p~f~ev~~~f~~fi~ 88 (245)
T Consensus 423 yVVfDiETTGLs~~~d~iIE~aAvKikng~iI-d~f~~Fi~P-~~pl~~~~telTgITdeml~~a~~i~~vL~kf~~~~~ 500 (1444)
T COG2176 423 YVVFDIETTGLSPVYDEIIEIAAVKIKNGRII-DKFQFFIKP-GRPLSATITELTGITDEMLENAPEIEEVLEKFREFIG 500 (1444)
T ss_pred EEEEEEECCCCCCCCCHHHHHEEEEEECCCCH-HHHHHHCCC-CCCCCHHHHHCCCCCHHHHCCCCCHHHHHHHHHHHHC
T ss_conf 89998553776754201562000443388043-778975089-9967644542035679987488339999999999844
Q ss_pred CCCCEEEEECCCCCCCEEEECHHCCCCCCCCCCHHCCCHHCCCCCCCC-CCCCHHHHHHHHCCCCCCCCCCCCHHHHHHH
Q ss_conf 023202310232243112100000112222100001100000001776-4222378999718754555666402699999
Q gi|254780818|r 89 EQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHRSKHGALLDSHLL 167 (245)
Q Consensus 89 ~~~~~lVaHNa~FD~~fL~~el~r~~~~~~~~~~~iDTl~lar~~~p~-~~~~L~~l~~~~~i~~~~r~~H~Al~Da~~~ 167 (245)
T Consensus 501 --d~IlVAHNasFD~gFl~~~~~k~~~~~~-~~pvIDTL~lar~L~P~~ksh~Lg~l~kk~~v~le~--hHRA~yDaeat 575 (1444)
T COG2176 501 --DSILVAHNASFDMGFLNTNYEKYGLEPL-TNPVIDTLELARALNPEFKSHRLGTLCKKLGVELER--HHRADYDAEAT 575 (1444)
T ss_pred --CCEEEECCCCCCHHHHHHHHHHHCCCCC-CCCHHHHHHHHHHHCHHHHHCCHHHHHHHHCCCHHH--HHHHHHHHHHH
T ss_conf --8589961675564578888998388510-275011999998757454324667788874863787--53101008999
Q ss_pred HHHHHHHHHCCCCCCCCC
Q ss_conf 999999973057666654
Q gi|254780818|r 168 SDVYIKMMVGGSQINFGF 185 (245)
Q Consensus 168 a~v~~~ll~g~~q~~l~l 185 (245)
T Consensus 576 ~~vf~~f~~~~ke~Gi~~ 593 (1444)
T COG2176 576 AKVFFVFLKDLKEKGITN 593 (1444)
T ss_pred HHHHHHHHHHHHHHCHHH
T ss_conf 999999999998845565