HHsearch alignment for GI: 254780818 and conserved domain: COG2925

>COG2925 SbcB Exonuclease I [DNA replication, recombination, and repair].
Probab=99.44  E-value=2.3e-13  Score=103.46  Aligned_cols=174  Identities=19%  Similarity=0.219  Sum_probs=113.4

Q ss_pred             CCCEEEEECCCCCCCCCCCEEEEEEEEEEE-CCEECCCEEEEEECCCC-CCCCHHHEEECCCCCCCCC-CCCCCCHHHHH
Q ss_conf             775899984678888888889999999999-99880313798985888-2288657242021012322-48521002344
Q gi|254780818|r    6 KMRKIVFDIETTGLDSKNDRIIEIGAVELL-DYSKTNRTFQVFLCPNG-RKNSPEALKLHGITDEFLK-DKPSFSSIFSE   82 (245)
Q Consensus         6 ~mr~iv~D~ETTGl~~~~d~Iieigav~i~-~~~~~~~~f~~~i~P~~-~~i~~~~~~ihGIt~~~l~-~~p~f~ev~~~   82 (245)
T Consensus         8 ~~tF~~yDYETfG~~Pa~DRPaQFAgIRTD~~~NiIgeP~~fyCkpsdDyLP~P~a~LITGITPQ~~~~~Gi~E~~F~~~   87 (475)
T COG2925           8 QPTFLFYDYETFGVHPALDRPAQFAGIRTDIEFNIIGEPIVFYCKPADDYLPQPGAVLITGITPQEAREKGINEAAFAAR   87 (475)
T ss_pred             CCCEEEEECHHCCCCCCCCCCHHHHEEECCCCCCCCCCCEEEEECCCCCCCCCCCCEEEECCCHHHHHHCCCCHHHHHHH
T ss_conf             98679975033177856666135411210343432478727985475456899873666257878897648985899999


Q ss_pred             HHHHHHCCCCEEEEEC-CCCCCCEEEECHHCCCCC-----CCCCCHHCCCHHCCCC---------CCC----C-CCCCHH
Q ss_conf             7775300232023102-322431121000001122-----2210000110000000---------177----6-422237
Q gi|254780818|r   83 FWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKD-----PLDPSRIIDTLSIARR---------KHP----S-SRNDLN  142 (245)
Q Consensus        83 f~~fi~~~~~~lVaHN-a~FD~~fL~~el~r~~~~-----~~~~~~~iDTl~lar~---------~~p----~-~~~~L~  142 (245)
T Consensus        88 I~~~ls~P~Tcv~GYNniRfDDEvtRy~fyRNF~DPYa~sWqngNSRWDLLD~~RacyALRPeGI~Wp~n~dG~pSFkLE  167 (475)
T COG2925          88 IHAELTQPNTCVLGYNNIRFDDEVTRYIFYRNFYDPYAWSWQNGNSRWDLLDVVRACYALRPEGINWPENDDGLPSFKLE  167 (475)
T ss_pred             HHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHH
T ss_conf             99985799815623555333268898889872276666761389842579999999975285568788678897511068


Q ss_pred             HHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             89997187545556664026999999999999730576666
Q gi|254780818|r  143 SLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF  183 (245)
Q Consensus       143 ~l~~~~~i~~~~r~~H~Al~Da~~~a~v~~~ll~g~~q~~l  183 (245)
T Consensus       168 hLtkANgie--H~nAHdAmsDVyATIamAk--lvk~~QPrL  204 (475)
T COG2925         168 HLTKANGIE--HSNAHDAMSDVYATIAMAK--LVKTAQPRL  204 (475)
T ss_pred             HHHHCCCCC--CCHHHHHHHHHHHHHHHHH--HHHHHCCHH
T ss_conf             776425611--0005678899999999999--987618479