HHsearch alignment for GI: 254780818 and conserved domain: PRK05755
>PRK05755 DNA polymerase I; Provisional.
Probab=98.71 E-value=4.8e-08 Score=70.25 Aligned_cols=137 Identities=19% Similarity=0.303 Sum_probs=91.1
Q ss_pred CEEEEECCCCCCCCCCCEEEEEEEEEEECCEECCCEEEEEECCCCCCCCHHHEEECCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 58999846788888888899999999999988031379898588822886572420210123224852100234477753
Q gi|254780818|r 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFF 87 (245)
Q Consensus 8 r~iv~D~ETTGl~~~~d~Iieigav~i~~~~~~~~~f~~~i~P~~~~i~~~~~~ihGIt~~~l~~~p~f~ev~~~f~~fi 87 (245)
T Consensus 320 ~~va~dtEttsld~~~a~lVGis~s-~~~----g~a~--YI-Pl~----------~~-------~~~~~~~vl~~Lk~lL 374 (889)
T PRK05755 320 GLVAFDTETTSLDPMSANLVGLSFA-VEE----GEAA--YI-PLA----------HD-------DQLDRDDALAALKPLL 374 (889)
T ss_pred CEEEEEEECCCCCCCCCCEEEEEEE-CCC----CCEE--EE-ECC----------CC-------CCCCHHHHHHHHHHHH
T ss_conf 8499998417887565762599998-279----9689--98-444----------31-------3368899999999997
Q ss_pred HCCCCEEEEECCCCCCCEEEECHHCCCCCCCCCCHHCCCHHCCCCCCCCC-CCCHHHHHHHH-CCCCCC-----------
Q ss_conf 00232023102322431121000001122221000011000000017764-22237899971-875455-----------
Q gi|254780818|r 88 NEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSS-RNDLNSLCKRY-GITISH----------- 154 (245)
Q Consensus 88 ~~~~~~lVaHNa~FD~~fL~~el~r~~~~~~~~~~~iDTl~lar~~~p~~-~~~L~~l~~~~-~i~~~~----------- 154 (245)
T Consensus 375 ed~~i~KIghNlK~dl~vL----~~~GI~l--~g~~fDTmLAaYLLdP~~~~~~Ld~La~~yL~~~~~~~eel~gkg~~~ 448 (889)
T PRK05755 375 EDPAIPKVGQNLKYDRHIL----ANYGIEL--RGIAFDTMLASYLLDPGAGRHDLDSLAERYLGHKTISFEEVAGKGNQL 448 (889)
T ss_pred CCCCCCEEEECHHHHHHHH----HHCCEEC--CCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCHHHHCCCCCCC
T ss_conf 0988724320318999999----9779235--776301999998747887767789999986323442034313656556
Q ss_pred --------CCCCCCHHHHHHHHHHHHHHH
Q ss_conf --------566640269999999999997
Q gi|254780818|r 155 --------RSKHGALLDSHLLSDVYIKMM 175 (245)
Q Consensus 155 --------r~~H~Al~Da~~~a~v~~~ll 175 (245)
T Consensus 449 ~~~~v~~e~~~~YaaedA~~~~~L~~~L~ 477 (889)
T PRK05755 449 TFAQVALEEAAEYAAEDADVTLRLHQVLK 477 (889)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 61007878999999998868999999999