HHsearch alignment for GI: 254780818 and conserved domain: PRK05762

>PRK05762 DNA polymerase II; Reviewed.
Probab=97.91  E-value=3.4e-05  Score=52.47  Aligned_cols=145  Identities=18%  Similarity=0.282  Sum_probs=85.2

Q ss_pred             CCCEEEEECCCCCCCCCCCEEEEEEEEEEECCEECCCEEEEEECCCCCCCCHHHEEECCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             77589998467888888888999999999999880313798985888228865724202101232248521002344777
Q gi|254780818|r    6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWD   85 (245)
Q Consensus         6 ~mr~iv~D~ETTGl~~~~d~Iieigav~i~~~~~~~~~f~~~i~P~~~~i~~~~~~ihGIt~~~l~~~p~f~ev~~~f~~   85 (245)
T Consensus       154 ~lrvlSfDIEc~----~~g~ii~I~l~~-~~~~---~v~~--~g~---~~~----------~~~v~~~~~E~eLL~~F~~  210 (785)
T PRK05762        154 PLKVVSLDIETS----NKGELYSIGLEG-CGQR---QVYM--LGE---ANG----------DAELEYVADEKALLERFNA  210 (785)
T ss_pred             CCEEEEEEEEEC----CCCCEEEEEECC-CCCC---EEEE--ECC---CCC----------CCEEEEECCHHHHHHHHHH
T ss_conf             886999998977----999889999517-9984---6899--668---899----------8538990999999999999


Q ss_pred             HHHCCC-CEEEEECC-CCCCCEEEECHHCCCCCC------------------------CCCCHHCCCHHCCCCC-CCCCC
Q ss_conf             530023-20231023-224311210000011222------------------------2100001100000001-77642
Q gi|254780818|r   86 FFNEQN-AEWIAHNA-KFDVGFINAELQRINKDP------------------------LDPSRIIDTLSIARRK-HPSSR  138 (245)
Q Consensus        86 fi~~~~-~~lVaHNa-~FD~~fL~~el~r~~~~~------------------------~~~~~~iDTl~lar~~-~p~~~  138 (245)
T Consensus       211 ~i~~~DPDII~GyNi~~FDlpyL~~Ra~~~gi~l~lgR~~~~~~~~~~~~~~~~~~~~i~GRv~iD~~~~~k~~~~~l~s  290 (785)
T PRK05762        211 WFAEFDPDVIIGWNVVQFDLRLLQERAERYGIPLRLGRGGSELSWRVHGHKRGHFFASVPGRLVLDGIDALKSAFYEFKS  290 (785)
T ss_pred             HHHHHCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCEEEEEEEEEEEEEEHHHHHHHHHCCCC
T ss_conf             99985999899627478777999999999499854687888653331565566059998428999709999875203676


Q ss_pred             CCHHHHHHHH-CC----CCC-CC--------------CCCCCHHHHHHHHHHHHH
Q ss_conf             2237899971-87----545-55--------------666402699999999999
Q gi|254780818|r  139 NDLNSLCKRY-GI----TIS-HR--------------SKHGALLDSHLLSDVYIK  173 (245)
Q Consensus       139 ~~L~~l~~~~-~i----~~~-~r--------------~~H~Al~Da~~~a~v~~~  173 (245)
T Consensus       291 YsL~~Va~~~Lge~K~~~~~~~r~~eI~~~~~~~r~~l~~Y~l~Da~L~~~L~~k  345 (785)
T PRK05762        291 FSLENVAQELLGEGKAIDNPYDRMDEIDRYFADDKPALAKYNLKDCELVTRIFEK  345 (785)
T ss_pred             CCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             6299999998544555566666688889988546899999999999999999998