HHsearch alignment for GI: 254780818 and conserved domain: PRK07246
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated.
Probab=100.00 E-value=0 Score=323.44 Aligned_cols=172 Identities=22% Similarity=0.403 Sum_probs=156.4
Q ss_pred CCCCCCCCEEEEECCCCCCCCCCCEEEEEEEEEEECCEECCCEEEEEECCCCCCCCHHHEEECCCCCCCCCCCCCCCHHH
Q ss_conf 98667775899984678888888889999999999998803137989858882288657242021012322485210023
Q gi|254780818|r 1 MIRKNKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIF 80 (245)
Q Consensus 1 ~~~~~~mr~iv~D~ETTGl~~~~d~Iieigav~i~~~~~~~~~f~~~i~P~~~~i~~~~~~ihGIt~~~l~~~p~f~ev~ 80 (245)
T Consensus 1 ~~~~~~~~~~vvDlETTG~~~~-~~Iiqi~~v~~~~~~i~-~~f~t~vnP~-~~ip~~I~~LTgI~~~~v~~ap~f~~v~ 77 (820)
T PRK07246 1 MTQKKLRKYAVVDLEATGAGPN-ASIIQVGIVIIQGNKII-DSYETDVNPH-ESLDEHIVHLTGITDKQLAQAPDFSQVA 77 (820)
T ss_pred CCCCCCCCEEEEEEECCCCCCC-CCEEEEEEEEEECCEEE-EEEEECCCCC-CCCCHHHHHHCCCCHHHHHCCCCHHHHH
T ss_conf 9624467189999887898999-87799999999999998-9987311889-9799788864698989985299989999
Q ss_pred HHHHHHHHCCCCEEEEECCCCCCCEEEECHHCCCCCCCCCCHHCCCHHCCCCCCCCC-CCCHHHHHHHHCCCCCCCCCCC
Q ss_conf 447775300232023102322431121000001122221000011000000017764-2223789997187545556664
Q gi|254780818|r 81 SEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHG 159 (245)
Q Consensus 81 ~~f~~fi~~~~~~lVaHNa~FD~~fL~~el~r~~~~~~~~~~~iDTl~lar~~~p~~-~~~L~~l~~~~~i~~~~r~~H~ 159 (245)
T Consensus 78 ~~~~~~l~--~~~~VaHNv~FD~~fl~~~~~~~g~~~--~~~~~DTv~La~i~~P~~~~y~L~~L~~~l~~~~~--~~Hr 151 (820)
T PRK07246 78 HHIYQLIE--DCIFVAHNVKFDANLLAEALFLEGYEL--RTPRVDTVELAQVFFPRLEKYSLSHLSRQLNIDLA--EAHT 151 (820)
T ss_pred HHHHHHHC--CCEEEEECCCCCHHHHHHHHHHCCCCC--CCCCCCHHHHHHHHCCCCCCCCHHHHHHHCCCCCC--CCCC
T ss_conf 99999967--985998372016999999999758988--99826099999997798788888999997399999--8876
Q ss_pred CHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 0269999999999997305766
Q gi|254780818|r 160 ALLDSHLLSDVYIKMMVGGSQI 181 (245)
Q Consensus 160 Al~Da~~~a~v~~~ll~g~~q~ 181 (245)
T Consensus 152 A~~Da~ata~l~~~l~~~l~~l 173 (820)
T PRK07246 152 AIADARATAILFLRLLQKIESL 173 (820)
T ss_pred HHHHHHHHHHHHHHHHHHHHCC
T ss_conf 1889999999999999998619