HHsearch alignment for GI: 254780818 and conserved domain: PRK07247
>PRK07247 DNA polymerase III subunit epsilon; Validated.
Probab=100.00 E-value=2.8e-42 Score=284.13 Aligned_cols=165 Identities=18% Similarity=0.261 Sum_probs=141.0
Q ss_pred CCCCEEEEECCCCCCCCCCCEEEEEEEEEEECCEECCCEEEEEECCCCCCCCHHHEEECCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 77758999846788888888899999999999988031379898588822886572420210123224852100234477
Q gi|254780818|r 5 NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFW 84 (245)
Q Consensus 5 ~~mr~iv~D~ETTGl~~~~d~Iieigav~i~~~~~~~~~f~~~i~P~~~~i~~~~~~ihGIt~~~l~~~p~f~ev~~~f~ 84 (245)
T Consensus 3 ~~~~yvv~DlETTg~~~-~~~IIEIgAVk~~~g~iv-d~F~slVnP~-~~I~~~i~~lTGIt~~~v~~aP~~~eVl~~f~ 79 (195)
T PRK07247 3 HLETYIAFDLEFNTVND-VSHIIQVSAVKYDHHKEV-DSFDTYVYTD-VPLQSFINGLTGITADKIAAAPKVEEVLAAFK 79 (195)
T ss_pred CCCEEEEEEEECCCCCC-CCEEEEEEEEEEECCEEE-EEEEEEECCC-CCCCHHHHHCCCCCHHHHHCCCCHHHHHHHHH
T ss_conf 68849999977899999-980699999999899899-9998356698-99995554135989999835999999999999
Q ss_pred HHHHCCCCEEEEECC-CCCCCEEEECHHCCCCCCCCCCHHCCCHHCCCCC-CCCC-CCCHHHHHHHHCCCCCCCCCCCCH
Q ss_conf 753002320231023-2243112100000112222100001100000001-7764-222378999718754555666402
Q gi|254780818|r 85 DFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRIIDTLSIARRK-HPSS-RNDLNSLCKRYGITISHRSKHGAL 161 (245)
Q Consensus 85 ~fi~~~~~~lVaHNa-~FD~~fL~~el~r~~~~~~~~~~~iDTl~lar~~-~p~~-~~~L~~l~~~~~i~~~~r~~H~Al 161 (245)
T Consensus 80 ~Fig--d~~lVaHNa~~FD~~fL~~~~~~~~~~~~--~~~~~~~~~~r~~~~p~l~n~kL~tLa~~f~I~~---~~HRAl 152 (195)
T PRK07247 80 NFVG--ELPLIGYNAQKSDLPILAENGLDLRDQYQ--VDLFDEAFDRRSSDLNGIANLKLQTVATFLGIKG---RGHNSL 152 (195)
T ss_pred HHHC--CCEEEEECCCHHHHHHHHHHHHHHCCCCC--CCHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCC---CCCCCH
T ss_conf 9968--99189908845149999998774157766--8569999999886058876777899999749999---890818
Q ss_pred HHHHHHHHHHHHHHHCCC
Q ss_conf 699999999999973057
Q gi|254780818|r 162 LDSHLLSDVYIKMMVGGS 179 (245)
Q Consensus 162 ~Da~~~a~v~~~ll~g~~ 179 (245)
T Consensus 153 ~DA~aTa~If~klLe~~~ 170 (195)
T PRK07247 153 EDARMTARIYESFLETDT 170 (195)
T ss_pred HHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999766