HHsearch alignment for GI: 254780818 and conserved domain: PRK08074
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated.
Probab=100.00 E-value=0 Score=321.43 Aligned_cols=166 Identities=29% Similarity=0.494 Sum_probs=152.4
Q ss_pred CEEEEECCCCCCCCC-CCEEEEEEEEEEECCEECCCEEEEEECCCCCCCCHHHEEECCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 589998467888888-8889999999999998803137989858882288657242021012322485210023447775
Q gi|254780818|r 8 RKIVFDIETTGLDSK-NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDF 86 (245)
Q Consensus 8 r~iv~D~ETTGl~~~-~d~Iieigav~i~~~~~~~~~f~~~i~P~~~~i~~~~~~ihGIt~~~l~~~p~f~ev~~~f~~f 86 (245)
T Consensus 4 ~~~vvDlETTG~~~~~~d~IIqig~v~i~~~~i~-~~f~t~vnP~-~~iP~~I~~LTgI~~~~v~~AP~f~eva~~i~~~ 81 (932)
T PRK08074 4 RFVVVDLETTGNSPKKGDKIIQIAAVVVEDGEIL-ERFSTFVNPE-RPIPPFITELTGISEEMVKNAPLFEDVAPMIVEL 81 (932)
T ss_pred EEEEEEEECCCCCCCCCCEEEEEEEEEEECCEEE-EEEECCCCCC-CCCCHHHHHHCCCCHHHHCCCCCHHHHHHHHHHH
T ss_conf 0899998888989777988999979999999998-9985325899-9899778860698989980599989999999999
Q ss_pred HHCCCCEEEEECCCCCCCEEEECHHCCCCCCCCCCHHCCCHHCCCCCCCCC-CCCHHHHHHHHCCCCCCCCCCCCHHHHH
Q ss_conf 300232023102322431121000001122221000011000000017764-2223789997187545556664026999
Q gi|254780818|r 87 FNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSS-RNDLNSLCKRYGITISHRSKHGALLDSH 165 (245)
Q Consensus 87 i~~~~~~lVaHNa~FD~~fL~~el~r~~~~~~~~~~~iDTl~lar~~~p~~-~~~L~~l~~~~~i~~~~r~~H~Al~Da~ 165 (245)
T Consensus 82 l~--~~~~VaHNv~FD~~FL~~~l~~~G~~~~-~~~~~DTveLa~i~~P~~~sy~L~~L~~~l~i~~~--~~HrA~sDa~ 156 (932)
T PRK08074 82 LE--GAYFVAHNVHFDLNFLNEELERAGYTEI-HCPKLDTVELARILLPTADSYKLSDLSEELELEHD--QPHRADSDAE 156 (932)
T ss_pred HC--CCEEEECCHHHHHHHHHHHHHHCCCCCC-CCCEECHHHHHHHHCCCCCCCCHHHHHHHCCCCCC--CCCCCHHHHH
T ss_conf 66--9959947805409999999997399866-68765199999997788788888999986499999--9875178899
Q ss_pred HHHHHHHHHHHCCCC
Q ss_conf 999999999730576
Q gi|254780818|r 166 LLSDVYIKMMVGGSQ 180 (245)
Q Consensus 166 ~~a~v~~~ll~g~~q 180 (245)
T Consensus 157 aTa~l~~~l~~~l~~ 171 (932)
T PRK08074 157 VTAELFLQLLHKLER 171 (932)
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 999999999999983