HHsearch alignment for GI: 254780818 and conserved domain: PRK10829

>PRK10829 ribonuclease D; Provisional.
Probab=96.50  E-value=0.021  Score=34.96  Aligned_cols=136  Identities=18%  Similarity=0.203  Sum_probs=81.5

Q ss_pred             CEEEEECCCCCCCCCCCE--EEEEEEEEEECCEECCCEEEEEECCCCCCCCHHHEEECCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             589998467888888888--999999999999880313798985888228865724202101232248521002344777
Q gi|254780818|r    8 RKIVFDIETTGLDSKNDR--IIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWD   85 (245)
Q Consensus         8 r~iv~D~ETTGl~~~~d~--Iieigav~i~~~~~~~~~f~~~i~P~~~~i~~~~~~ihGIt~~~l~~~p~f~ev~~~f~~   85 (245)
T Consensus        23 ~~iavDTEf~r~~ty~p~l~LiQi~-----~----~~~-~~lIDpl--~~~d----------------------l~~l~~   68 (373)
T PRK10829         23 PAIALDTEFVRTRTYYPQLGLIQLF-----D----GEQ-LALIDPL--GITD----------------------WSPFKA   68 (373)
T ss_pred             CCEEEECCCCCCCCCCCEEEEEEEE-----E----CCC-EEEEECC--CCCC----------------------HHHHHH
T ss_conf             9189857745677789845899985-----1----896-7999478--7777----------------------699999


Q ss_pred             HHHCCCCEEEEECCCCCCCEEEECHHCCCCCCCCCCHHCCCHHCCCCCCCCCCCCHHHHHHH-HCCCCCC----------
Q ss_conf             53002320231023224311210000011222210000110000000177642223789997-1875455----------
Q gi|254780818|r   86 FFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKR-YGITISH----------  154 (245)
Q Consensus        86 fi~~~~~~lVaHNa~FD~~fL~~el~r~~~~~~~~~~~iDTl~lar~~~p~~~~~L~~l~~~-~~i~~~~----------  154 (245)
T Consensus        69 ll~~~~i~kv~Haa~qDle~l~~---~~g~~---p~~iFDTQiAa~~lg~~~~~gy~~Lv~~~l~v~l~K~~~~sDW~~R  142 (373)
T PRK10829         69 LLRDPSITKFLHAGSEDLEVFLN---AFGEL---PQPLIDTQILAAFCGRPLSWGFASMVEEYSGVALDKSESRTDWLAR  142 (373)
T ss_pred             HHCCCCCEEEEECCCCHHHHHHH---HCCCC---CCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf             97098841652064215999999---81988---7407764889986578655589999999939665666462757889


Q ss_pred             ----CCCCCCHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             ----56664026999999999999730576666
Q gi|254780818|r  155 ----RSKHGALLDSHLLSDVYIKMMVGGSQINF  183 (245)
Q Consensus       155 ----r~~H~Al~Da~~~a~v~~~ll~g~~q~~l  183 (245)
T Consensus       143 PLs~~ql~YA~~DV~yL~~l~~~L~~~l~~~~r  175 (373)
T PRK10829        143 PLSERQCEYAAADVWYLLPIAAKLMVETEAAGW  175 (373)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             999899999999999999999999999983575