HHsearch alignment for GI: 254780818 and conserved domain: TIGR00573

>TIGR00573 dnaq exonuclease, DNA polymerase III, epsilon subunit family; InterPro: IPR006054 All proteins in this entry for which functions are known are components of the DNA polymerase III complex (epsilon subunit). There is, however, an outgroup that includes paralogs in some gamma-proteobacteria and the N-terminal region of DinG from some low GC Gram-positive bacteria. ; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication.
Probab=100.00  E-value=0  Score=327.31  Aligned_cols=180  Identities=42%  Similarity=0.677  Sum_probs=160.6

Q ss_pred             CEEEEECCCCCCCCCCCEEEEEEEEEEECCEECCCEEEEEECCCCCCCCHHHEEECCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             58999846788888888899999999999988031379898588822886572420210123224852100234477753
Q gi|254780818|r    8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFF   87 (245)
Q Consensus         8 r~iv~D~ETTGl~~~~d~Iieigav~i~~~~~~~~~f~~~i~P~~~~i~~~~~~ihGIt~~~l~~~p~f~ev~~~f~~fi   87 (245)
T Consensus         8 t~t~~d~e~tgl~~~~~~II~IGAv~~i~rr~~~~~~~~~~~P~-R~~~~~~~k~hGItDd~L~dkP~F~eia~dF~~~I   86 (228)
T TIGR00573         8 TFTTGDNETTGLYAKHDEIIEIGAVEIINRRIIGNKFHTYIKPD-RLIDPDAIKIHGITDDMLKDKPDFKEIAEDFADYI   86 (228)
T ss_pred             EEEEEECCCCCCCCCCCCEEEEEEEEEECCCEEECCEEEEECCC-CCCCCCEEEECCCCHHHHCCCCCHHHHHHHHHHHH
T ss_conf             26875211067632243045453376644614401005776188-88896425524888288468985137889999983


Q ss_pred             HCCCCEEEEECCCCCCCEEEECHHCCCCC-CCCCCHH---CCCHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHH
Q ss_conf             00232023102322431121000001122-2210000---1100000001776422237899971875455566640269
Q gi|254780818|r   88 NEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRI---IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD  163 (245)
Q Consensus        88 ~~~~~~lVaHNa~FD~~fL~~el~r~~~~-~~~~~~~---iDTl~lar~~~p~~~~~L~~l~~~~~i~~~~r~~H~Al~D  163 (245)
T Consensus        87 ~--g~~Lv~HNA~FD~GFl~~e~~~LG~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~Ld~L~~~~~~~~s~R~~H~A~~D  164 (228)
T TIGR00573        87 K--GAVLVIHNASFDVGFLNYEFSKLGLKKEPKTNDVIDTTDTLQAARPEFPGKRNTLDALALRYEITNSHRALHGALLD  164 (228)
T ss_pred             C--CCEEEEEHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf             7--94787520030577899999851450110011444499999999720588430277778780544037777317788


Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf             999999999997305766665444321
Q gi|254780818|r  164 SHLLSDVYIKMMVGGSQINFGFKTNED  190 (245)
Q Consensus       164 a~~~a~v~~~ll~g~~q~~l~l~~~~~  190 (245)
T Consensus       165 A~~l~~~~~~~~~~~~~~~de~~~~~g  191 (228)
T TIGR00573       165 AFILAKLYLVMTGKQTKYNDELNENEG  191 (228)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999999998612203244788766