HHsearch alignment for GI: 254780818 and conserved domain: TIGR00573
>TIGR00573 dnaq exonuclease, DNA polymerase III, epsilon subunit family; InterPro: IPR006054 All proteins in this entry for which functions are known are components of the DNA polymerase III complex (epsilon subunit). There is, however, an outgroup that includes paralogs in some gamma-proteobacteria and the N-terminal region of DinG from some low GC Gram-positive bacteria. ; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication.
Probab=100.00 E-value=0 Score=327.31 Aligned_cols=180 Identities=42% Similarity=0.677 Sum_probs=160.6
Q ss_pred CEEEEECCCCCCCCCCCEEEEEEEEEEECCEECCCEEEEEECCCCCCCCHHHEEECCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 58999846788888888899999999999988031379898588822886572420210123224852100234477753
Q gi|254780818|r 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFF 87 (245)
Q Consensus 8 r~iv~D~ETTGl~~~~d~Iieigav~i~~~~~~~~~f~~~i~P~~~~i~~~~~~ihGIt~~~l~~~p~f~ev~~~f~~fi 87 (245)
T Consensus 8 t~t~~d~e~tgl~~~~~~II~IGAv~~i~rr~~~~~~~~~~~P~-R~~~~~~~k~hGItDd~L~dkP~F~eia~dF~~~I 86 (228)
T TIGR00573 8 TFTTGDNETTGLYAKHDEIIEIGAVEIINRRIIGNKFHTYIKPD-RLIDPDAIKIHGITDDMLKDKPDFKEIAEDFADYI 86 (228)
T ss_pred EEEEEECCCCCCCCCCCCEEEEEEEEEECCCEEECCEEEEECCC-CCCCCCEEEECCCCHHHHCCCCCHHHHHHHHHHHH
T ss_conf 26875211067632243045453376644614401005776188-88896425524888288468985137889999983
Q ss_pred HCCCCEEEEECCCCCCCEEEECHHCCCCC-CCCCCHH---CCCHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHH
Q ss_conf 00232023102322431121000001122-2210000---1100000001776422237899971875455566640269
Q gi|254780818|r 88 NEQNAEWIAHNAKFDVGFINAELQRINKD-PLDPSRI---IDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLD 163 (245)
Q Consensus 88 ~~~~~~lVaHNa~FD~~fL~~el~r~~~~-~~~~~~~---iDTl~lar~~~p~~~~~L~~l~~~~~i~~~~r~~H~Al~D 163 (245)
T Consensus 87 ~--g~~Lv~HNA~FD~GFl~~e~~~LG~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~Ld~L~~~~~~~~s~R~~H~A~~D 164 (228)
T TIGR00573 87 K--GAVLVIHNASFDVGFLNYEFSKLGLKKEPKTNDVIDTTDTLQAARPEFPGKRNTLDALALRYEITNSHRALHGALLD 164 (228)
T ss_pred C--CCEEEEEHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 7--94787520030577899999851450110011444499999999720588430277778780544037777317788
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 999999999997305766665444321
Q gi|254780818|r 164 SHLLSDVYIKMMVGGSQINFGFKTNED 190 (245)
Q Consensus 164 a~~~a~v~~~ll~g~~q~~l~l~~~~~ 190 (245)
T Consensus 165 A~~l~~~~~~~~~~~~~~~de~~~~~g 191 (228)
T TIGR00573 165 AFILAKLYLVMTGKQTKYNDELNENEG 191 (228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999998612203244788766