HHsearch alignment for GI: 254780818 and conserved domain: TIGR03491

>TIGR03491 RecB family nuclease, putative, TM0106 family. Members of this uncharacterized protein family are found broadly but sporadically among bacteria. The N-terminal region is homologous to the Cas4 protein of CRISPR systems, although this protein family shows no signs of association with CRISPR repeats.

Probab=94.68  E-value=0.22  Score=28.67  Aligned_cols=77  Identities=17%  Similarity=0.251  Sum_probs=45.1

Q ss_pred             CHHHHHHHHHHHCCCCEEEEECCCCCCCEEEECHHCCCCCCCC----CCHHCCCHHCCCC--CCCCCCCCHHHHHHHHCC
Q ss_conf             0023447775300232023102322431121000001122221----0000110000000--177642223789997187
Q gi|254780818|r   77 SSIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD----PSRIIDTLSIARR--KHPSSRNDLNSLCKRYGI  150 (245)
Q Consensus        77 ~ev~~~f~~fi~~~~~~lVaHNa~FD~~fL~~el~r~~~~~~~----~~~~iDTl~lar~--~~p~~~~~L~~l~~~~~i  150 (245)
T Consensus       329 ~~~~~~f~~~l~~~p~~~IyHY~~yE~~al~rLa~~~~~~e~evd~ll~r~VDL~~vvr~~~~~p~~sysLK~ve~~~gf  408 (457)
T TIGR03491       329 ELAWQQFLQLLQSYPDAPIYHYGETEKDSLRRLAKRYGTPEAEIEELLKRFVDIHTIVRRSWILPIESYSLKSIARWLGF  408 (457)
T ss_pred             HHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHCCCCHHHHHHHHHHHEEHHHHHHCEEECCCCCCCHHHHHHHCCC
T ss_conf             99999999999868996599845487999999998719986999999987610699760158837998759999987197


Q ss_pred             CCC
Q ss_conf             545
Q gi|254780818|r  151 TIS  153 (245)
Q Consensus       151 ~~~  153 (245)
T Consensus       409 ~w~  411 (457)
T TIGR03491       409 EWR  411 (457)
T ss_pred             CCC
T ss_conf             445