HHsearch alignment for GI: 254780818 and conserved domain: cd00007
>cd00007 35EXOc 3'-5' exonuclease. The 35EXOc domain is responsible for the 3'-5' exonuclease proofreading activity of prokaryotic DNA polymerase I (pol I) and other enzymes, it catalyses the hydrolysis of unpaired or mismatched nucleotides. This domain consists of the amino-terminal half of the Klenow fragment in E. coli pol I. 35EXOc is also found in the Werner syndrome helicase (WRN), focus forming activity 1 protein (FFA-1) and ribonuclease D (RNase D).
Probab=99.06 E-value=1.4e-09 Score=79.79 Aligned_cols=133 Identities=22% Similarity=0.354 Sum_probs=85.0
Q ss_pred CEEEEECCCCCCCCCCCEEEEEEEEEEECCEECCCEEEEEECCCCCCCCHHHEEECCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 58999846788888888899999999999988031379898588822886572420210123224852100234477753
Q gi|254780818|r 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFF 87 (245)
Q Consensus 8 r~iv~D~ETTGl~~~~d~Iieigav~i~~~~~~~~~f~~~i~P~~~~i~~~~~~ihGIt~~~l~~~p~f~ev~~~f~~fi 87 (245)
T Consensus 1 ~~ia~D~Et~~l~~~~~~i~~iql~-~~-----~~~~--yi~~~~-~~---------------------~~~~~~l~~~l 50 (155)
T cd00007 1 KEVAFDTETTGLNYHRGKLVGIQIA-TA-----GEAA--YIPDEL-EL---------------------EEDLEALKELL 50 (155)
T ss_pred CEEEEECCCCCCCCCCCCEEEEEEE-EC-----CCEE--EEEECC-CC---------------------HHHHHHHHHHH
T ss_conf 9899989879997788809999999-89-----9359--998147-55---------------------24699999998
Q ss_pred HCCCCEEEEECCCCCCCEEEECHHCCCCCCCCCCHHCCCHHCCCCCCCCC-CCCHHHHHHHHC-CCCCC-----------
Q ss_conf 00232023102322431121000001122221000011000000017764-222378999718-75455-----------
Q gi|254780818|r 88 NEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSS-RNDLNSLCKRYG-ITISH----------- 154 (245)
Q Consensus 88 ~~~~~~lVaHNa~FD~~fL~~el~r~~~~~~~~~~~iDTl~lar~~~p~~-~~~L~~l~~~~~-i~~~~----------- 154 (245)
T Consensus 51 ~~~~i~Kv~hn~k~D~~~L~~----~~~~~--~~~~~Dt~iaa~ll~~~~~~~~L~~l~~~~l~~~~~k~~~~~~~~~~~ 124 (155)
T cd00007 51 EDEDITKVGHDAKFDLVVLAR----DGIEL--PGNIFDTMLAAYLLNPGEGSHSLDDLAKEYLGIELDKDEQIYGKGAKT 124 (155)
T ss_pred HCCCCCEEEECCCHHHHHHHH----CCCCC--CCCEEHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCHHHHHCCCCCCC
T ss_conf 299973898734000999986----28601--350114999999847785523699999998398767488861776544
Q ss_pred -------CCCCCCHHHHHHHHHHHHHHHH
Q ss_conf -------5666402699999999999973
Q gi|254780818|r 155 -------RSKHGALLDSHLLSDVYIKMMV 176 (245)
Q Consensus 155 -------r~~H~Al~Da~~~a~v~~~ll~ 176 (245)
T Consensus 125 ~~~~l~~~~~~YAa~D~~~~~~l~~~l~~ 153 (155)
T cd00007 125 FARPLSEELLEYAAEDADALLRLYEKLLE 153 (155)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 44799899999999999999999999996