HHsearch alignment for GI: 254780818 and conserved domain: cd05782
>cd05782 DNA_polB_like1_exo A subfamily of the 3'-5' exonuclease domain of family-B DNA polymerases. This subfamily is composed of uncharacterized bacterial family-B DNA polymerases. Family-B DNA polymerases contain an N-terminal DEDDy DnaQ-like exonuclease domain in the same polypeptide chain as the polymerase domain, similar to family-A DNA polymerases. This exonuclease domain contains three sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are involved in metal binding and catalysis. The exonuclease domain of family-B DNA polymerases has a fundamental role in proofreading activity. It contains a beta hairpin structure that plays an important role in active site switching in the event of a nucleotide misincorporation. Family-B DNA polymerases are predominantly involved in DNA replication and DNA repair.
Probab=98.62 E-value=2.1e-07 Score=66.19 Aligned_cols=95 Identities=16% Similarity=0.230 Sum_probs=64.0
Q ss_pred CHHHHHHHHHHHCCCCEEEEECC-CCCCCEEEECHHCCCCCCCC---------------CCHHCCCHHCCCCCCCCCCCC
Q ss_conf 00234477753002320231023-22431121000001122221---------------000011000000017764222
Q gi|254780818|r 77 SSIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLD---------------PSRIIDTLSIARRKHPSSRND 140 (245)
Q Consensus 77 ~ev~~~f~~fi~~~~~~lVaHNa-~FD~~fL~~el~r~~~~~~~---------------~~~~iDTl~lar~~~p~~~~~ 140 (245)
T Consensus 79 ~~ll~~F~~~i~~~~p~lv~~Ng~~FD~P~l~~Ral~~gi~~p~~~~~~~~~~~y~~r~~~~H~Dl~d~l~~~~~~~~~s 158 (208)
T cd05782 79 KELLEDFFQLIEKKNPRLVSFNGRGFDLPVLHLRALIHGVSAPAYFDLGNKDWNYRNRYSERHLDLMDLLAFYGARARAS 158 (208)
T ss_pred HHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCC
T ss_conf 99999999999865997996368757589999999991989755540488741124888763132999985548757788
Q ss_pred HHHHHHHHCCCCCCCCC------------------CCCHHHHHHHHHHHH
Q ss_conf 37899971875455566------------------640269999999999
Q gi|254780818|r 141 LNSLCKRYGITISHRSK------------------HGALLDSHLLSDVYI 172 (245)
Q Consensus 141 L~~l~~~~~i~~~~r~~------------------H~Al~Da~~~a~v~~ 172 (245)
T Consensus 159 Ld~la~llG~pgK~-~~~Gs~V~~~~~~g~l~~I~~YCe~DVl~T~~v~l 207 (208)
T cd05782 159 LDLLAKLLGIPGKM-DVDGSQVWELYAEGKLDEIAEYCETDVLNTYLLYL 207 (208)
T ss_pred HHHHHHHHCCCCCC-CCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999983899757-88889999999819988999999999999999980