HHsearch alignment for GI: 254780818 and conserved domain: cd06125

>cd06125 DnaQ_like_exo The DnaQ-like exonuclease superfamily is a structurally conserved group of 3'-5' exonucleases, which catalyze the excision of nucleoside monophosphates at the DNA or RNA termini in the 3'-5' direction. It is also called the DEDD superfamily, after the four invariant acidic residues present in the catalytic site of its members. The superfamily consists of DNA- and RNA-processing enzymes such as the proofreading domains of DNA polymerases, other DNA exonucleases, RNase D, RNase T, Oligoribonuclease and RNA exonucleases (REX). The DnaQ-like exonuclease domain contains three conserved sequence motifs termed ExoI, ExoII and ExoIII, which are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. The conservation patterns of the three motifs may vary among different subfamilies. DnaQ-like exonucleases are classified as DEDDy or DEDDh exonucleases depending on the variation of motif
Probab=99.96  E-value=1e-30  Score=211.88  Aligned_cols=118  Identities=28%  Similarity=0.437  Sum_probs=105.8

Q ss_pred             EEEECCCCCCCC-CCCEEEEEEEEEEECCEECCCEEEEEECCCCCCCCHHHEEECCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             999846788888-8888999999999999880313798985888228865724202101232248521002344777530
Q gi|254780818|r   10 IVFDIETTGLDS-KNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFN   88 (245)
Q Consensus        10 iv~D~ETTGl~~-~~d~Iieigav~i~~~~~~~~~f~~~i~P~~~~i~~~~~~ihGIt~~~l~~~p~f~ev~~~f~~fi~   88 (245)
T Consensus         1 Vv~D~ETTGl~~~~~d~Iiei~~v~~~~----~~~~~~~v~p~-~~i~~~~~~i~gi~~~~v~~~p~~~~~~~~~~~f~~   75 (130)
T cd06125           1 VAFDIETTGLNGNARDEIIEIALVVVHI----GEKFVFDVKPD-DLIDPYAFTISGITDEVVERAATEAELLIELLAFLR   75 (130)
T ss_pred             CEEEEECCCCCCCCCCEEEEEEEEEEEC----CCEEEEEECCC-CCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             9898018996999998589999999718----98899997999-989977941037599998330608999999999976


Q ss_pred             CCCCEEEEECCCCCCCEEEECHHCCCCCCCC-CCHHCCCHHCCCC
Q ss_conf             0232023102322431121000001122221-0000110000000
Q gi|254780818|r   89 EQNAEWIAHNAKFDVGFINAELQRINKDPLD-PSRIIDTLSIARR  132 (245)
Q Consensus        89 ~~~~~lVaHNa~FD~~fL~~el~r~~~~~~~-~~~~iDTl~lar~  132 (245)
T Consensus        76 ~~~~ilVgHN~~FD~~fL~~~~~r~g~~~~~~~~~~iDTl~lar~  120 (130)
T cd06125          76 DKDDILVGHNISFDLPYLLNRAAELGIPYPILGRIVFDTLALALE  120 (130)
T ss_pred             CCCCEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCEEECHHHHHH
T ss_conf             999999991947749999999998499998789968686098421