HHsearch alignment for GI: 254780818 and conserved domain: cd06129
>cd06129 RNaseD_like The RNase D-like group is composed of RNase D, WRN, and similar proteins. They contain a DEDDy-type, DnaQ-like, 3'-5' exonuclease domain that contains three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. RNase D is involved in the 3'-end processing of tRNA precursors. RNase D-like proteins in eukaryotes include yeast Rrp6p, human PM/Scl-100 and Drosophila melanogaster egalitarian (Egl) protein. WRN is a unique DNA helicase possessing exonuclease activity. Mutation in the WRN gene is implicated in Werner syndrome, a disease associated with premature aging and increased predisposition to cancer. Yeast Rrp6p and the human Polymyositis/scleroderma autoantigen 100kDa (PM/Scl-100) are exosome-associated proteins involved in the degradation and processing of prec
Probab=98.32 E-value=2.2e-06 Score=59.89 Aligned_cols=125 Identities=18% Similarity=0.214 Sum_probs=77.5
Q ss_pred EEEEECCCCCCCCCCCE--EEEEEEEEEECCEECCCEEEEEECCCCCCCCHHHEEECCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 89998467888888888--9999999999998803137989858882288657242021012322485210023447775
Q gi|254780818|r 9 KIVFDIETTGLDSKNDR--IIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDF 86 (245)
Q Consensus 9 ~iv~D~ETTGl~~~~d~--Iieigav~i~~~~~~~~~f~~~i~P~~~~i~~~~~~ihGIt~~~l~~~p~f~ev~~~f~~f 86 (245)
T Consensus 17 vig~DtE~~~~~~~~~~v~LiQlat---~~-----~--~~lid~~~--~~~------------------~~~~L~~---l 63 (159)
T cd06129 17 VVALDCEWIPLRLYYGEVTLIQIGT---TE-----H--AFLFDVLS--LSA------------------FDGGLKT---V 63 (159)
T ss_pred EEEEECCCCCCCCCCCCEEEEEEEE---CC-----E--EEEEECCC--CCC------------------CHHHHHH---H
T ss_conf 8999797689879989789999945---99-----6--89995488--876------------------7799999---9
Q ss_pred HHCCCCEEEEECCCCCCCEEEECHHCCCCCCCCCCHHCCCHHCCCCC-CCCCCCCHHHHHHHH-CCCCCC----------
Q ss_conf 30023202310232243112100000112222100001100000001-776422237899971-875455----------
Q gi|254780818|r 87 FNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRK-HPSSRNDLNSLCKRY-GITISH---------- 154 (245)
Q Consensus 87 i~~~~~~lVaHNa~FD~~fL~~el~r~~~~~~~~~~~iDTl~lar~~-~p~~~~~L~~l~~~~-~i~~~~---------- 154 (245)
T Consensus 64 L~~~~i~Kvgh~~~~D~~~L~~---~~g~~---~~~~~Dt~~~~~~l~~~~~~~sL~~l~~~~lg~~ldK~~q~SnW~~r 137 (159)
T cd06129 64 LENPSITKVGHGCRGDLAKLLR---DFGIL---LRNLFDTQAAHAILGYPEEYWSLNSLVEQYLGPCLDKSRQLSDWAKR 137 (159)
T ss_pred HHCCCCEEEEECHHHHHHHHHH---HCCCC---CCCCHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf 8299924999566999999967---50843---24303699999995888431659999999808787710245888999
Q ss_pred ----CCCCCCHHHHHHHHHHHH
Q ss_conf ----566640269999999999
Q gi|254780818|r 155 ----RSKHGALLDSHLLSDVYI 172 (245)
Q Consensus 155 ----r~~H~Al~Da~~~a~v~~ 172 (245)
T Consensus 138 pLt~~Qi~YAA~Da~~ll~lyl 159 (159)
T cd06129 138 PLTEEQMLYAAADVYVLLHIYL 159 (159)
T ss_pred CCCHHHHHHHHHHHHHHHHHHC
T ss_conf 9999999999999999999769