HHsearch alignment for GI: 254780818 and conserved domain: cd06129

>cd06129 RNaseD_like The RNase D-like group is composed of RNase D, WRN, and similar proteins. They contain a DEDDy-type, DnaQ-like, 3'-5' exonuclease domain that contains three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. RNase D is involved in the 3'-end processing of tRNA precursors. RNase D-like proteins in eukaryotes include yeast Rrp6p, human PM/Scl-100 and Drosophila melanogaster egalitarian (Egl) protein. WRN is a unique DNA helicase possessing exonuclease activity. Mutation in the WRN gene is implicated in Werner syndrome, a disease associated with premature aging and increased predisposition to cancer. Yeast Rrp6p and the human Polymyositis/scleroderma autoantigen 100kDa (PM/Scl-100) are exosome-associated proteins involved in the degradation and processing of prec
Probab=98.32  E-value=2.2e-06  Score=59.89  Aligned_cols=125  Identities=18%  Similarity=0.214  Sum_probs=77.5

Q ss_pred             EEEEECCCCCCCCCCCE--EEEEEEEEEECCEECCCEEEEEECCCCCCCCHHHEEECCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             89998467888888888--9999999999998803137989858882288657242021012322485210023447775
Q gi|254780818|r    9 KIVFDIETTGLDSKNDR--IIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDF   86 (245)
Q Consensus         9 ~iv~D~ETTGl~~~~d~--Iieigav~i~~~~~~~~~f~~~i~P~~~~i~~~~~~ihGIt~~~l~~~p~f~ev~~~f~~f   86 (245)
T Consensus        17 vig~DtE~~~~~~~~~~v~LiQlat---~~-----~--~~lid~~~--~~~------------------~~~~L~~---l   63 (159)
T cd06129          17 VVALDCEWIPLRLYYGEVTLIQIGT---TE-----H--AFLFDVLS--LSA------------------FDGGLKT---V   63 (159)
T ss_pred             EEEEECCCCCCCCCCCCEEEEEEEE---CC-----E--EEEEECCC--CCC------------------CHHHHHH---H
T ss_conf             8999797689879989789999945---99-----6--89995488--876------------------7799999---9


Q ss_pred             HHCCCCEEEEECCCCCCCEEEECHHCCCCCCCCCCHHCCCHHCCCCC-CCCCCCCHHHHHHHH-CCCCCC----------
Q ss_conf             30023202310232243112100000112222100001100000001-776422237899971-875455----------
Q gi|254780818|r   87 FNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRK-HPSSRNDLNSLCKRY-GITISH----------  154 (245)
Q Consensus        87 i~~~~~~lVaHNa~FD~~fL~~el~r~~~~~~~~~~~iDTl~lar~~-~p~~~~~L~~l~~~~-~i~~~~----------  154 (245)
T Consensus        64 L~~~~i~Kvgh~~~~D~~~L~~---~~g~~---~~~~~Dt~~~~~~l~~~~~~~sL~~l~~~~lg~~ldK~~q~SnW~~r  137 (159)
T cd06129          64 LENPSITKVGHGCRGDLAKLLR---DFGIL---LRNLFDTQAAHAILGYPEEYWSLNSLVEQYLGPCLDKSRQLSDWAKR  137 (159)
T ss_pred             HHCCCCEEEEECHHHHHHHHHH---HCCCC---CCCCHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf             8299924999566999999967---50843---24303699999995888431659999999808787710245888999


Q ss_pred             ----CCCCCCHHHHHHHHHHHH
Q ss_conf             ----566640269999999999
Q gi|254780818|r  155 ----RSKHGALLDSHLLSDVYI  172 (245)
Q Consensus       155 ----r~~H~Al~Da~~~a~v~~  172 (245)
T Consensus       138 pLt~~Qi~YAA~Da~~ll~lyl  159 (159)
T cd06129         138 PLTEEQMLYAAADVYVLLHIYL  159 (159)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHC
T ss_conf             9999999999999999999769