HHsearch alignment for GI: 254780818 and conserved domain: cd06148
>cd06148 Egl_like_exo The Egalitarian (Egl) protein subfamily is composed of Drosophila Egl and similar proteins. Egl is a component of an mRNA-binding complex which is required for oocyte specification. Egl contains a DEDDy-type DnaQ-like 3'-5' exonuclease domain possessing three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. The motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. The conservation of this subfamily throughout eukaryotes suggests that its members may be part of ancient RNA processing complexes that are likely to participate in the regulated processing of specific mRNAs.
Probab=97.55 E-value=0.00063 Score=44.49 Aligned_cols=133 Identities=18% Similarity=0.224 Sum_probs=73.6
Q ss_pred CCEEEEECCCCCCCCCCCE--EEEEEEEEEECCEECCCEEEEEECCCCCCCCHHHEEECCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 7589998467888888888--99999999999988031379898588822886572420210123224852100234477
Q gi|254780818|r 7 MRKIVFDIETTGLDSKNDR--IIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFW 84 (245)
Q Consensus 7 mr~iv~D~ETTGl~~~~d~--Iieigav~i~~~~~~~~~f~~~i~P~~~~i~~~~~~ihGIt~~~l~~~p~f~ev~~~f~ 84 (245)
T Consensus 10 ~~vi~iD~E~~~~~~~-g~l~LiQiat---~----~~~vy--l~D~~--~~~~----------------~~~~~~Lk~iL 61 (197)
T cd06148 10 QKVIGLDCEGVNLGRK-GKLCLVQIAT---R----TGQIY--LFDIL--KLGS----------------IVFINGLKDIL 61 (197)
T ss_pred CCEEEEECCCCCCCCC-CCEEEEEEEE---C----CCCEE--EEECC--CCCC----------------HHHHHHHHHHH
T ss_conf 9999998886788989-9887999964---8----99889--99616--6763----------------44568999995
Q ss_pred HHHHCCCCEEEEECCCCCCCEEEECHHCCCCCCCCCCHHCCCHHCCC--------CCCCCCCCCHHHHHHHH-CCC----
Q ss_conf 75300232023102322431121000001122221000011000000--------01776422237899971-875----
Q gi|254780818|r 85 DFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIAR--------RKHPSSRNDLNSLCKRY-GIT---- 151 (245)
Q Consensus 85 ~fi~~~~~~lVaHNa~FD~~fL~~el~r~~~~~~~~~~~iDTl~lar--------~~~p~~~~~L~~l~~~~-~i~---- 151 (245)
T Consensus 62 e---~~~I~KV~H~~r~D~~~L~~~---~gi~---~~nvfDTqiA~~ll~~~~~~~~~~~~~~sl~~l~~~~l~~~~~~~ 132 (197)
T cd06148 62 E---SKKILKVIHDCRRDSDALYHQ---YGIK---LNNVFDTQVADALLQEQETGGFNPDRVISLVQLLDKYLYISISLK 132 (197)
T ss_pred C---CCCCEEEEECHHHHHHHHHHH---HCCC---CCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCHHH
T ss_conf 6---998239996109999999997---0997---067031999999975313147677564159999999957640177
Q ss_pred ------------------CCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf ------------------4555666402699999999999973
Q gi|254780818|r 152 ------------------ISHRSKHGALLDSHLLSDVYIKMMV 176 (245)
Q Consensus 152 ------------------~~~r~~H~Al~Da~~~a~v~~~ll~ 176 (245)
T Consensus 133 ~~~~~~~~~~~s~W~~RPLt~~ql~YAa~DV~yL~~L~~~L~~ 175 (197)
T cd06148 133 EDVKKLMREDPKFWALRPLTEDMIRYAALDVLCLLPLYYAMLD 175 (197)
T ss_pred HHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8778887506554467999999999999989999999999999