HHsearch alignment for GI: 254780818 and conserved domain: smart00479
>smart00479 EXOIII exonuclease domain in DNA-polymerase alpha and epsilon chain, ribonuclease T and other exonucleases.
Probab=100.00 E-value=2e-39 Score=266.35 Aligned_cols=165 Identities=32% Similarity=0.522 Sum_probs=147.3
Q ss_pred CEEEEECCCCCCCCCCCEEEEEEEEEEECCEECCCEEEEEECCCCCCCCHHHEEECCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 58999846788888888899999999999988031379898588822886572420210123224852100234477753
Q gi|254780818|r 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFF 87 (245)
Q Consensus 8 r~iv~D~ETTGl~~~~d~Iieigav~i~~~~~~~~~f~~~i~P~~~~i~~~~~~ihGIt~~~l~~~p~f~ev~~~f~~fi 87 (245)
T Consensus 1 ~~v~~D~ETTGl~~~~~~Iieigav~~~~~~~-~~~~~~~i~P~-~~i~~~~~~i~GIt~~~l~~~~~~~~v~~~~~~~l 78 (169)
T smart00479 1 TLVVIDCETTGLDPGKDEIIEIAAVDVDGGRI-IVVFDTYVKPD-RPITDYATEIHGITPEMLDDAPTFEEVLEELLEFL 78 (169)
T ss_pred CEEEEEEECCCCCCCCCEEEEEEEEEEECCEE-EEEEEEEECCC-CCCCHHHHHHCCCCCHHCCCCCCHHHHHHHHHHHH
T ss_conf 99999985279999998699999999999988-78889887999-99998998631847212045866999999999860
Q ss_pred HCCCCEEEE-ECCCCCCCEEEECHHCCCCCCCCCCHHCCCHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHH
Q ss_conf 002320231-0232243112100000112222100001100000001776422237899971875455566640269999
Q gi|254780818|r 88 NEQNAEWIA-HNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166 (245)
Q Consensus 88 ~~~~~~lVa-HNa~FD~~fL~~el~r~~~~~~~~~~~iDTl~lar~~~p~~~~~L~~l~~~~~i~~~~r~~H~Al~Da~~ 166 (245)
T Consensus 79 ~--~~~~v~~~~~~fD~~~L~~~~~~~~~~~~~~~~~~dt~~~~~~~~~~~~~~L~~l~~~~~i~~~~-~~H~Al~Da~~ 155 (169)
T smart00479 79 K--GKILVAGNALNFDLRFLKLEHPRLGIKDPPKNPVIDTLKLARALNPGRKYSLKKLAERLGLEVIG-RAHRALDDARA 155 (169)
T ss_pred C--CCCCHHCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCC-CCCCHHHHHHH
T ss_conf 4--87451036799999999999998189988665246299999997588545899999985999899-99297999999
Q ss_pred HHHHHHHHHHC
Q ss_conf 99999999730
Q gi|254780818|r 167 LSDVYIKMMVG 177 (245)
Q Consensus 167 ~a~v~~~ll~g 177 (245)
T Consensus 156 t~~v~~~l~~~ 166 (169)
T smart00479 156 TAKLFKKLVER 166 (169)
T ss_pred HHHHHHHHHHH
T ss_conf 99999999977