HHsearch alignment for GI: 254780818 and conserved domain: smart00479

>smart00479 EXOIII exonuclease domain in DNA-polymerase alpha and epsilon chain, ribonuclease T and other exonucleases.
Probab=100.00  E-value=2e-39  Score=266.35  Aligned_cols=165  Identities=32%  Similarity=0.522  Sum_probs=147.3

Q ss_pred             CEEEEECCCCCCCCCCCEEEEEEEEEEECCEECCCEEEEEECCCCCCCCHHHEEECCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             58999846788888888899999999999988031379898588822886572420210123224852100234477753
Q gi|254780818|r    8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFF   87 (245)
Q Consensus         8 r~iv~D~ETTGl~~~~d~Iieigav~i~~~~~~~~~f~~~i~P~~~~i~~~~~~ihGIt~~~l~~~p~f~ev~~~f~~fi   87 (245)
T Consensus         1 ~~v~~D~ETTGl~~~~~~Iieigav~~~~~~~-~~~~~~~i~P~-~~i~~~~~~i~GIt~~~l~~~~~~~~v~~~~~~~l   78 (169)
T smart00479        1 TLVVIDCETTGLDPGKDEIIEIAAVDVDGGRI-IVVFDTYVKPD-RPITDYATEIHGITPEMLDDAPTFEEVLEELLEFL   78 (169)
T ss_pred             CEEEEEEECCCCCCCCCEEEEEEEEEEECCEE-EEEEEEEECCC-CCCCHHHHHHCCCCCHHCCCCCCHHHHHHHHHHHH
T ss_conf             99999985279999998699999999999988-78889887999-99998998631847212045866999999999860


Q ss_pred             HCCCCEEEE-ECCCCCCCEEEECHHCCCCCCCCCCHHCCCHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHH
Q ss_conf             002320231-0232243112100000112222100001100000001776422237899971875455566640269999
Q gi|254780818|r   88 NEQNAEWIA-HNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL  166 (245)
Q Consensus        88 ~~~~~~lVa-HNa~FD~~fL~~el~r~~~~~~~~~~~iDTl~lar~~~p~~~~~L~~l~~~~~i~~~~r~~H~Al~Da~~  166 (245)
T Consensus        79 ~--~~~~v~~~~~~fD~~~L~~~~~~~~~~~~~~~~~~dt~~~~~~~~~~~~~~L~~l~~~~~i~~~~-~~H~Al~Da~~  155 (169)
T smart00479       79 K--GKILVAGNALNFDLRFLKLEHPRLGIKDPPKNPVIDTLKLARALNPGRKYSLKKLAERLGLEVIG-RAHRALDDARA  155 (169)
T ss_pred             C--CCCCHHCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCC-CCCCHHHHHHH
T ss_conf             4--87451036799999999999998189988665246299999997588545899999985999899-99297999999


Q ss_pred             HHHHHHHHHHC
Q ss_conf             99999999730
Q gi|254780818|r  167 LSDVYIKMMVG  177 (245)
Q Consensus       167 ~a~v~~~ll~g  177 (245)
T Consensus       156 t~~v~~~l~~~  166 (169)
T smart00479      156 TAKLFKKLVER  166 (169)
T ss_pred             HHHHHHHHHHH
T ss_conf             99999999977