HHsearch results for GI: 254780818 and protein with PDBid: 1s5j_A

>1s5j_A DNA polymerase I; replication, disulfide bonds, transferase; HET: DNA; 2.40A {Sulfolobus solfataricus} SCOP: c.55.3.5 e.8.1.1
Probab=97.53  E-value=0.00021  Score=46.11  Aligned_cols=154  Identities=20%  Similarity=0.262  Sum_probs=79.6

Q ss_pred             CCCEEEEECCCC-----CC-CCCCC--EEEEEEEEEEECCEECCCEEEEEECCCCCCCCHHHEEECCCCCCCCCCCCCCC
Q ss_conf             775899984678-----88-88888--89999999999998803137989858882288657242021012322485210
Q gi|254780818|r    6 KMRKIVFDIETT-----GL-DSKND--RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFS   77 (245)
Q Consensus         6 ~mr~iv~D~ETT-----Gl-~~~~d--~Iieigav~i~~~~~~~~~f~~~i~P~~~~i~~~~~~ihGIt~~~l~~~p~f~   77 (245)
                      .+|.+.||+||.     |+ +|..|  .||+|+++- .++   .+... .++..  ........+-|.+   +...++-.
T Consensus       189 ~lrilsfDIE~~s~~~~~fPdp~~~~~~ii~I~~~~-~~~---~~~~~-~~~~~--~~~~~~~~~~~~~---v~~f~sEk  258 (847)
T 1s5j_A          189 KIKRVAIDIEVYTPVKGRIPDSQKAEFPIISIALAG-SDG---LKKVL-VLNRN--DVNEGSVKLDGIS---VERFNTEY  258 (847)
T ss_dssp             CCCEEEEEEEECCSSSSCCCCTTTCCSCEEEEEEEE-TTS---CEEEE-EECSS--CCCCCCEEETTEE---EEEESSHH
T ss_pred             CCEEEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEE-CCC---CEEEE-EEECC--CCCCCCCCCCCCE---EEEECCHH
T ss_conf             844999998878888899989434774289999995-689---98999-98167--7776654579958---99989899


Q ss_pred             HHHHHHHHHHHCCCCEEEEECC-CCCCCEEEECHHCCCCCCC----CC----------CHHCCCH--------HCCCCCC
Q ss_conf             0234477753002320231023-2243112100000112222----10----------0001100--------0000017
Q gi|254780818|r   78 SIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPL----DP----------SRIIDTL--------SIARRKH  134 (245)
Q Consensus        78 ev~~~f~~fi~~~~~~lVaHNa-~FD~~fL~~el~r~~~~~~----~~----------~~~iDTl--------~lar~~~  134 (245)
                      +.+..|.+++.+ -.+++|||. .||+.+|..-..++|....    ..          ...+|..        ...+...
T Consensus       259 eLL~~F~~~i~d-pDII~GyNi~~FDlpYL~~Ra~~lg~~~~~~~~~~~g~~~~~~~~~~~~d~~~~~~~d~~~~~~~~~  337 (847)
T 1s5j_A          259 ELLGRFFDILLE-YPIVLTFNGDDFDLPYIYFRALKLGYFPEEIPIDVAGKDEAKYLAGLHIDLYKFFFNKAVRNYAFEG  337 (847)
T ss_dssp             HHHHHHHHHHTT-CSEEEESSTTTTHHHHHHHHHHTTTCCGGGCSEECCSTTCCEETTSEEEEHHHHHTSHHHHHHTSTT
T ss_pred             HHHHHHHHHCCC-CCEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEECCCCEEEEEEEEEEEEEEEEEHHHHHHHHHHHC
T ss_conf             999999974228-9979883105665899999999809983204253057323578620688653357598999987641


Q ss_pred             CCCCCCHHHHHHHH-CCCCCCC-----------CCCCCHHHHHHHHHH
Q ss_conf             76422237899971-8754555-----------666402699999999
Q gi|254780818|r  135 PSSRNDLNSLCKRY-GITISHR-----------SKHGALLDSHLLSDV  170 (245)
Q Consensus       135 p~~~~~L~~l~~~~-~i~~~~r-----------~~H~Al~Da~~~a~v  170 (245)
                      .-.+++|+++|+.+ |......           -..-.+-||.++..+
T Consensus       338 ~l~sy~L~~Va~~~Lg~~K~~~~~~~~~~d~~~l~~Y~~~D~~l~~~L  385 (847)
T 1s5j_A          338 KYNEYNLDAVAKALLGTSKVKVDTLISFLDVEKLIEYNFRDAEITLQL  385 (847)
T ss_dssp             CCSSCSHHHHHHHHHCCCCC--SSCTTTCCHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             302077999999983888422222020100688988875556888899