HHsearch results for GI: 254780818 and protein with PDBid: 1yt3_A
>1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase, tRNA processing, hydrolase,translation; 1.60A {Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5
Probab=98.63 E-value=6e-08 Score=68.26 Aligned_cols=136 Identities=19% Similarity=0.234 Sum_probs=86.7
Q ss_pred CCEEEEECCCCCCCCCCCEEEEEEEEEEECCEECCCEEEEEECCCCCCCCHHHEEECCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 75899984678888888889999999999998803137989858882288657242021012322485210023447775
Q gi|254780818|r 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDF 86 (245)
Q Consensus 7 mr~iv~D~ETTGl~~~~d~Iieigav~i~~~~~~~~~f~~~i~P~~~~i~~~~~~ihGIt~~~l~~~p~f~ev~~~f~~f 86 (245)
.+.|.|||||+++++...++ +.|.+.. ++. ..+|.|. .++ + +..+.+.
T Consensus 22 ~~~ia~DtE~~~~~ty~~~l---~LiQi~~----~~~-~~liD~l--~~~---------------~-------~~~L~~l 69 (375)
T 1yt3_A 22 FPAIALDTEFVRTRTYYPQL---GLIQLFD----GEH-LALIDPL--GIT---------------D-------WSPLKAI 69 (375)
T ss_dssp SSEEEEEEEEECCSCSSCEE---EEEEEEC----SSC-EEEECGG--GCS---------------C-------CHHHHHH
T ss_pred CCEEEEECCCCCCCCCCCEE---EEEEEEE----CCE-EEEEECC--CCC---------------C-------HHHHHHH
T ss_conf 99089979848988888878---9999876----892-7999658--987---------------7-------8999999
Q ss_pred HHCCCCEEEEECCCCCCCEEEECHHCCCCCCCCCCHHCCCHHCCCCCCCCCCCCHHHHHHH-HCCCCCC-----------
Q ss_conf 3002320231023224311210000011222210000110000000177642223789997-1875455-----------
Q gi|254780818|r 87 FNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKR-YGITISH----------- 154 (245)
Q Consensus 87 i~~~~~~lVaHNa~FD~~fL~~el~r~~~~~~~~~~~iDTl~lar~~~p~~~~~L~~l~~~-~~i~~~~----------- 154 (245)
+...+...|+||+.||+.+|.+.+ |.. +..++||+..++..-.+.+++|+.++.+ +|+++..
T Consensus 70 l~~~~i~kv~h~~~~D~~~L~~~~---~~~---~~~~fDt~ia~~~~~~~~~~~l~~l~~~~l~~~l~K~~~~sdW~~rP 143 (375)
T 1yt3_A 70 LRDPSITKFLHAGSEDLEVFLNVF---GEL---PQPLIDTQILAAFCGRPMSWGFASMVEEYSGVTLDKSESRTDWLARP 143 (375)
T ss_dssp HHCTTSEEEESSCHHHHHHHHHHH---SSC---CSSEEEHHHHHHHTTCCTTCCHHHHHHHHHCCCCCCTTTTSCTTSSS
T ss_pred HHCCCCEEEEECHHHHHHHHHHHC---CCC---CCCEEECHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCC
T ss_conf 819886199725586799999964---988---88716638889883875067888999998645033055452225666
Q ss_pred ---CCCCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf ---56664026999999999999730576
Q gi|254780818|r 155 ---RSKHGALLDSHLLSDVYIKMMVGGSQ 180 (245)
Q Consensus 155 ---r~~H~Al~Da~~~a~v~~~ll~g~~q 180 (245)
.+.+-|..|+..|.++|..|.....+
T Consensus 144 Ls~~ql~YAa~Dv~~l~~l~~~l~~~L~~ 172 (375)
T 1yt3_A 144 LTERQCEYAAADVWYLLPITAKLMVETEA 172 (375)
T ss_dssp CCHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHCCCEEHHHHHHHHHHHHHH
T ss_conf 87899999840732379999999987763