HHsearch results for GI: 254780818 and protein with PDBid: 2gui_A
>2gui_A DNA polymerase III epsilon subunit; DNA polymerase proofreading domain, transferase; HET: DNA U5P; 1.60A {Escherichia coli} SCOP: c.55.3.5 PDB: 1j54_A* 1j53_A* 2ido_A*
Probab=100.00 E-value=4.4e-40 Score=269.05 Aligned_cols=174 Identities=44% Similarity=0.782 Sum_probs=156.4
Q ss_pred CCCCCCEEEEECCCCCCCCC-----CCEEEEEEEEEEECCEECCCEEEEEECCCCCCCCHHHEEECCCCCCCCCCCCCCC
Q ss_conf 66777589998467888888-----8889999999999998803137989858882288657242021012322485210
Q gi|254780818|r 3 RKNKMRKIVFDIETTGLDSK-----NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFS 77 (245)
Q Consensus 3 ~~~~mr~iv~D~ETTGl~~~-----~d~Iieigav~i~~~~~~~~~f~~~i~P~~~~i~~~~~~ihGIt~~~l~~~p~f~ 77 (245)
...++|+||||||||||+|. .|||||||||++.++..++++|+.+|+|. .++.+.+.++|||+++++.++|+|.
T Consensus 5 ~~~~~r~vv~D~ETTGl~~~~~~~~~drIieigav~~~~~~~~~~~~~~~v~P~-~~~~~~~~~i~gi~~e~~~~~~~~~ 83 (194)
T 2gui_A 5 STAITRQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGVHGIADEFLLDKPTFA 83 (194)
T ss_dssp ---CCEEEEEEEEESCCCSSSSTTTTCCEEEEEEEEEETTEECSCCEEEECCCS-SCCCHHHHHHHCCCHHHHTTSCCHH
T ss_pred CCCCCCEEEEEEECCCCCCCCCCCCCCEEEEEEEEEEECCEEECEEEEEEECCC-CCCCHHHHHHHCCCHHHHHHHHHHH
T ss_conf 878883799997379998764567895499999999999999740789998999-8655778987075576643345589
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCCEEEECHHCCCCCCCC---CCHHCCCHHCCCCCCCCCCCCHHHHHHHHCCCCCC
Q ss_conf 023447775300232023102322431121000001122221---00001100000001776422237899971875455
Q gi|254780818|r 78 SIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD---PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISH 154 (245)
Q Consensus 78 ev~~~f~~fi~~~~~~lVaHNa~FD~~fL~~el~r~~~~~~~---~~~~iDTl~lar~~~p~~~~~L~~l~~~~~i~~~~ 154 (245)
+++.+|.+|++ +.++|+||+.||..+++..+.+++.+... .+.++|++.++|..+|+.+++|+.||.+|+++..+
T Consensus 84 ~v~~~~~~~l~--~~~~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~p~~~~~L~~l~~~~~i~~~~ 161 (194)
T 2gui_A 84 EVADEFMDYIR--GAELVIHNAAFDIGFMDYEFSLLKRDIPKTNTFCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSK 161 (194)
T ss_dssp HHHHHHHHHHT--TSEEEETTHHHHHHHHHHHHHHTCSCCCCGGGTSEEEEHHHHHHHHSTTSCCSHHHHHHHTTCCCTT
T ss_pred HHHHHHHHHHC--CCEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEHHHHHHHHCCCCCCCHHHHHHHCCCCCCC
T ss_conf 98899998708--9738997851319999999998099976555442000199999997489878899999985999899
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf 5666402699999999999973057
Q gi|254780818|r 155 RSKHGALLDSHLLSDVYIKMMVGGS 179 (245)
Q Consensus 155 r~~H~Al~Da~~~a~v~~~ll~g~~ 179 (245)
+++|+||+||++|++||++|++|+.
T Consensus 162 ~~~H~Al~Da~~t~~l~~~m~~~~~ 186 (194)
T 2gui_A 162 RTLHGALLDAQILAEVYLAMTGGQT 186 (194)
T ss_dssp CSSCCHHHHHHHHHHHHHHHTC---
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCH
T ss_conf 9874889999999999999977855