HHsearch results for GI: 254780818 and protein with PDBid: 2hbj_A
>2hbj_A Exosome complex exonuclease RRP6; RNA metabolism, RNA surveillance, RNA processing, hydrolase, gene regulation; 2.10A {Saccharomyces cerevisiae} SCOP: a.60.8.4 c.55.3.5 PDB: 2hbk_A 2hbl_A* 2hbm_A*
Probab=98.30 E-value=1.5e-06 Score=59.45 Aligned_cols=133 Identities=18% Similarity=0.260 Sum_probs=80.9
Q ss_pred CCCEEEEECCCCCCCCCCCEEEEEEEEEEECCEECCCEEEEEECCCCCCCCHHHEEECCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 77589998467888888888999999999999880313798985888228865724202101232248521002344777
Q gi|254780818|r 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWD 85 (245)
Q Consensus 6 ~mr~iv~D~ETTGl~~~~d~Iieigav~i~~~~~~~~~f~~~i~P~~~~i~~~~~~ihGIt~~~l~~~p~f~ev~~~f~~ 85 (245)
..+.|.|||||++.+....++. .|.+.. ++. ..+|.|. .+... + ..+.++
T Consensus 105 ~~~~iavDtE~~~~~t~~~~l~---LiQi~t----~~~-~~liD~l--~l~~~-----------l-------~~L~~l-- 154 (410)
T 2hbj_A 105 NTKEIAVDLEHHDYRSYYGIVC---LMQIST----RER-DYLVDTL--KLREN-----------L-------HILNEV-- 154 (410)
T ss_dssp TCSEEEEEEEEECSSSSSCEEE---EEEEEC----SSC-EEEEETT--TTTTT-----------G-------GGGHHH--
T ss_pred CCCEEEEEEEECCCCCCCCCEE---EEEEEE----CCC-CEEEEEC--CCCCC-----------H-------HHHHHH--
T ss_conf 5991999704778851677068---999981----897-7898501--45335-----------8-------999999--
Q ss_pred HHHCCCCEEEEECCCCCCCEEEECHHCCCCCCCCCCHHCCCHHCCCCCCCCCCCCHHHHHHHH-CCCCCC----------
Q ss_conf 530023202310232243112100000112222100001100000001776422237899971-875455----------
Q gi|254780818|r 86 FFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRY-GITISH---------- 154 (245)
Q Consensus 86 fi~~~~~~lVaHNa~FD~~fL~~el~r~~~~~~~~~~~iDTl~lar~~~p~~~~~L~~l~~~~-~i~~~~---------- 154 (245)
+...+-.-|+||+.||+.+|.+.+ |.. ...++||...++.+- ..+.+|++|+.+| |+.+..
T Consensus 155 -l~d~~I~KV~H~~~~Dl~~L~~~~---g~~---~~~~fDT~ia~~~l~-~~~~sL~~L~~~~l~~~l~K~~q~sDW~~R 226 (410)
T 2hbj_A 155 -FTNPSIVKVFHGAFMDIIWLQRDL---GLY---VVGLFDTYHASKAIG-LPRHSLAYLLENFANFKTSKKYQLADWRIR 226 (410)
T ss_dssp -HTCTTSEEEESSCHHHHHHHHHHH---CCC---CSSEEEHHHHHHHHT-CSCCSHHHHHHHHSCCCCCCTTTTSCTTCS
T ss_pred -HCCCCCEEEEECHHHHHHHHHHHC---CCC---CCCCCCHHHHHHHCC-CCCCCHHHHHHHHHCCCCCCCHHHHHHCCC
T ss_conf -749994299955787799999845---756---787202699999809-887569999998736665641334200455
Q ss_pred ----CCCCCCHHHHHHHHHHHHHHHH
Q ss_conf ----5666402699999999999973
Q gi|254780818|r 155 ----RSKHGALLDSHLLSDVYIKMMV 176 (245)
Q Consensus 155 ----r~~H~Al~Da~~~a~v~~~ll~ 176 (245)
.+.+-|..||..|-.+|-.|..
T Consensus 227 PL~~~qi~YAa~Dv~~Ll~ly~~L~~ 252 (410)
T 2hbj_A 227 PLSKPMTAAARADTHFLLNIYDQLRN 252 (410)
T ss_dssp SCCHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 58799999998537889999999999