HHsearch results for GI: 254780818 and protein with PDBid: 2py5_A
>2py5_A DNA polymerase; protein-DNA complex, replication, transferase/DNA complex; HET: DNA; 1.60A {Bacillus phage PHI29} SCOP: c.55.3.5 e.8.1.1 PDB: 1xhz_A* 1xhx_A* 2ex3_A* 1xi1_A* 2pyj_A* 2pyl_A* 2pzs_A*
Probab=97.84 E-value=3.3e-05 Score=51.13 Aligned_cols=134 Identities=16% Similarity=0.177 Sum_probs=75.8
Q ss_pred CCEEEEECCCCCCCCCCCEEEEEEEEEEECCEECCCEEEEEECCCCCCCCHHHEEECCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 75899984678888888889999999999998803137989858882288657242021012322485210023447775
Q gi|254780818|r 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDF 86 (245)
Q Consensus 7 mr~iv~D~ETTGl~~~~d~Iieigav~i~~~~~~~~~f~~~i~P~~~~i~~~~~~ihGIt~~~l~~~p~f~ev~~~f~~f 86 (245)
++-.++|+||+ .+...+++-.+|+....+ . ..|. + .+.+++|+++
T Consensus 6 ~~~~~~D~Et~-~~~~~~~~~~~~~~~~~~---~-~~~~--~----------------------------~~~l~~f~~~ 50 (575)
T 2py5_A 6 RKMYSCAFETT-TKVEDCRVWAYGYMNIED---H-SEYK--I----------------------------GNSLDEFMAW 50 (575)
T ss_dssp CCEEEEEEEEC-CBTTBCCEEEEEEEESSC---T-TCEE--E----------------------------ESCHHHHHHH
T ss_pred CEEEEEEEEEC-CCCCCCEEEEEEEEECCC---C-EEEE--H----------------------------HHHHHHHHHH
T ss_conf 51799999706-897773147999971798---4-0777--0----------------------------8999999999
Q ss_pred HHCCCCEEEEECCCCCCCEEEECHHCCCCCCCC----C--------CHHCCCHHC-------------CCCCCCCCCCCH
Q ss_conf 300232023102322431121000001122221----0--------000110000-------------000177642223
Q gi|254780818|r 87 FNEQNAEWIAHNAKFDVGFINAELQRINKDPLD----P--------SRIIDTLSI-------------ARRKHPSSRNDL 141 (245)
Q Consensus 87 i~~~~~~lVaHNa~FD~~fL~~el~r~~~~~~~----~--------~~~iDTl~l-------------ar~~~p~~~~~L 141 (245)
+...+..+++||.+||..||...+.+.+..... . ...+-.+.. .+.-+.-.+.||
T Consensus 51 i~~~dpdi~~hNl~FD~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~DS~~l~~~SL 130 (575)
T 2py5_A 51 VLKVQADLYFHNLKFAGAFIINWLERNGFKWSADGLPNTYNTIISRMGQWYMIDICLGYKGKRKIHTVIYDSLKKLPFPV 130 (575)
T ss_dssp HHHHCCEEEETTHHHHHHHHHHHHHHTTCEECTTCCTTEEEEEEBTTCCEEEEEEEEEEETTEEEEEEEEEHHHHSCSCH
T ss_pred HHHCCCCEEEECCCCCHHHHHHHHHHCCCCCEECCCCCCCCCEEEECCEEEEEEEEEEECCEEEEEEEEEECCCCCCCCH
T ss_conf 98659979998875799999999997098620324676665226735457999899960330136899984214484479
Q ss_pred HHHHHHHCCCCCCCC-C----------------CCCHHHHHHHHHHHHHHH
Q ss_conf 789997187545556-6----------------640269999999999997
Q gi|254780818|r 142 NSLCKRYGITISHRS-K----------------HGALLDSHLLSDVYIKMM 175 (245)
Q Consensus 142 ~~l~~~~~i~~~~r~-~----------------H~Al~Da~~~a~v~~~ll 175 (245)
+.+++.|+++..... . --++.||.+|++++..+.
T Consensus 131 ~~va~~f~l~~~K~~~~~~~~~~~~~~~~~~~~~Y~~~Dv~ll~~i~~~~~ 181 (575)
T 2py5_A 131 KKIAKDFKLTVLKGDIDYHKERPVGYKITPEEYAYIKNDIQIIAEALLIQF 181 (575)
T ss_dssp HHHHHHTTCCCCSSCCCTTSCCCTTCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCCCCCHHHCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999987374545564774441022332329899999999999999999999