HHsearch results for GI: 254780818 and protein with PDBid: 3cym_A
>3cym_A Uncharacterized protein BAD_0989; structural genomics, unknown function, ribonuclease D, exonuclease; 2.10A {Bifidobacterium adolescentis ATCC15703}
Probab=98.07 E-value=3.9e-06 Score=56.92 Aligned_cols=129 Identities=22% Similarity=0.289 Sum_probs=79.9
Q ss_pred EEEEECCCCCCCCCCCE--EEEEEEEEEECCEECCCEEEEEECCCCCCCCHHHEEECCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 89998467888888888--9999999999998803137989858882288657242021012322485210023447775
Q gi|254780818|r 9 KIVFDIETTGLDSKNDR--IIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDF 86 (245)
Q Consensus 9 ~iv~D~ETTGl~~~~d~--Iieigav~i~~~~~~~~~f~~~i~P~~~~i~~~~~~ihGIt~~~l~~~p~f~ev~~~f~~f 86 (245)
.|.|||||++++....+ +|||+. .+ .. ..+|.|. .+.. ..+ .+..+.+.
T Consensus 40 ~iavDtE~~~~~~y~~~~~LvQi~~---~g-----~~-~~liDp~--~~~~--------------~~~----~~~~L~~~ 90 (440)
T 3cym_A 40 SLAADAERASGFRYGHEDWLVQFKR---DG-----AG-IGLLDPQ--ALAA--------------AGA----DWNDFNRA 90 (440)
T ss_dssp EEEEEEEECTTTSSSCCEEEEEEEE---ET-----TE-EEEECHH--HHHH--------------TTC----CHHHHHHH
T ss_pred CEEEECCCCCCCCCCCEEEEEEEEE---CC-----CC-EEEEECC--CCCC--------------CCC----HHHHHHHH
T ss_conf 1899798678880687478999867---89-----88-7998055--5565--------------553----17999998
Q ss_pred HHCCCCEEEEECCCCCCCEEEECHHCCCCCCCCCCHHCCCHHCCCCCCCCCCCCHHHHHHHH-CCCCCC---------C-
Q ss_conf 30023202310232243112100000112222100001100000001776422237899971-875455---------5-
Q gi|254780818|r 87 FNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRY-GITISH---------R- 155 (245)
Q Consensus 87 i~~~~~~lVaHNa~FD~~fL~~el~r~~~~~~~~~~~iDTl~lar~~~p~~~~~L~~l~~~~-~i~~~~---------r- 155 (245)
+. +...|+||+.||+.+| .++|..+ .+++||+..++..- ..+.+|+.||+.| |+.+.. |
T Consensus 91 l~--~i~kv~H~~~~Dl~~l----~~~g~~~---~~~fDTqiAa~~lg-~~~~gl~~l~~~~lg~~l~K~~~~sdW~~rP 160 (440)
T 3cym_A 91 VG--DAVWILHDSLQDLPGF----DELGMEP---QRLFDTEIAARLLG-LKRFGLAAVTEHFLGLTLAKEHSAADWSYRP 160 (440)
T ss_dssp HT--TCEEEESSHHHHHHHH----HHHTCCC---CEEEEHHHHHHHTT-CSSCSHHHHHHHHHCEECCCCCTTCCTTCSS
T ss_pred HC--CCEEEEECCHHHHHHH----HHCCCCC---CCCHHHHHHHHHCC-CCCCCHHHHHHHHHCCCCCHHHHHHHHCCCC
T ss_conf 67--9819997747899999----9878812---88122999998728-8877799999999476656388887617877
Q ss_pred ----CCCCCHHHHHHHHHHHHHHHH
Q ss_conf ----666402699999999999973
Q gi|254780818|r 156 ----SKHGALLDSHLLSDVYIKMMV 176 (245)
Q Consensus 156 ----~~H~Al~Da~~~a~v~~~ll~ 176 (245)
+..-|..|+..|-++|-.|..
T Consensus 161 Ls~~q~~YAa~Dv~~L~~l~~~l~~ 185 (440)
T 3cym_A 161 LPRDWRNYAALDVELLIELETKMRA 185 (440)
T ss_dssp CCHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8889999998606778999999999