HHsearch results for GI: 254780818 and protein with PDBid: 3d45_A
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, cytoplasm, exonuclease, hydrolase, magnesium, metal-binding, nonsense- mediated mRNA decay; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=98.62 E-value=7.8e-08 Score=67.56 Aligned_cols=88 Identities=20% Similarity=0.149 Sum_probs=57.4
Q ss_pred HCCCCEEEEECCCCCCCEEEECHHCCCCCC--------C--CCCHHCCCHHCCCCCC--C-CCCCCHHHHHHHHCCCC--
Q ss_conf 002320231023224311210000011222--------2--1000011000000017--7-64222378999718754--
Q gi|254780818|r 88 NEQNAEWIAHNAKFDVGFINAELQRINKDP--------L--DPSRIIDTLSIARRKH--P-SSRNDLNSLCKRYGITI-- 152 (245)
Q Consensus 88 ~~~~~~lVaHNa~FD~~fL~~el~r~~~~~--------~--~~~~~iDTl~lar~~~--p-~~~~~L~~l~~~~~i~~-- 152 (245)
.....++||||.-+|+-||-.-|-. .+|. + -...++||--|+.... + ...-+|..|+..++...
T Consensus 273 ~~~kkpiVgHN~~~Dl~~l~~~F~g-pLP~~~~eFk~~v~~lFP~i~DTK~la~~~~~~~~~~~t~L~~l~~~l~~~~~~ 351 (507)
T 3d45_A 273 ANSGKLVVGHNMLLDVMHTIHQFYC-PLPADLNEFKEMAICVFPRLLDTKLMASTQPFKDIINNTSLAELEKRLKETPFD 351 (507)
T ss_dssp HHHCCEEEESSCHHHHHHHHHHHTC-SCCSSHHHHHHHHHHHCSCEEEHHHHTTSTTHHHHCCCCCHHHHHHHTTSTTCC
T ss_pred HHCCCEEEEECCHHHHHHHHHHHCC-CCCCCHHHHHHHHHHHCCCCEEHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCC
T ss_conf 7259839992438889999998428-899679999999999777505888776316744467787699999998325789
Q ss_pred ---------------CCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf ---------------555666402699999999999973
Q gi|254780818|r 153 ---------------SHRSKHGALLDSHLLSDVYIKMMV 176 (245)
Q Consensus 153 ---------------~~r~~H~Al~Da~~~a~v~~~ll~ 176 (245)
....+|.|-.||.+|+.||+.|..
T Consensus 352 ~~~i~~~~~~~~~~~~~~~~HeAGyDA~mTg~vF~~l~~ 390 (507)
T 3d45_A 352 PPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMAN 390 (507)
T ss_dssp CCCEEECTTSCCCC----CCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 983422656665556788873538889999999999999