HHsearch results for GI: 254780818 and protein with PDBid: 3nae_A
>3nae_A DNA polymerase, GP43; RB69 DNA polymerase; HET: DNA G35 DOC DTP; 2.00A {Enterobacteria phage RB69} PDB: 3lzi_A* 3lzj_A* 1ig9_A* 1q9x_A* 2atq_A* 2dy4_A* 2oyq_A* 2ozm_A* 2ozs_A* 2p5g_A* 2p5o_A* 1q9y_A* 3l8b_A* 3lds_A* 3cq8_A* 1ih7_A* 1clq_A* 1waf_A* 1waj_A* 3cfr_A* ...
Probab=96.54 E-value=0.0014 Score=40.93 Aligned_cols=164 Identities=18% Similarity=0.262 Sum_probs=82.8
Q ss_pred CCCCEEEEECCCC---CC-CCC--CCEEEEEEEEEEECCEECCCEEEEEE---CCCCCCCCHH----HEEEC--CC---C
Q ss_conf 7775899984678---88-888--88899999999999988031379898---5888228865----72420--21---0
Q gi|254780818|r 5 NKMRKIVFDIETT---GL-DSK--NDRIIEIGAVELLDYSKTNRTFQVFL---CPNGRKNSPE----ALKLH--GI---T 66 (245)
Q Consensus 5 ~~mr~iv~D~ETT---Gl-~~~--~d~Iieigav~i~~~~~~~~~f~~~i---~P~~~~i~~~----~~~ih--GI---t 66 (245)
.+.|.+.||+||+ |+ +|. .|.|++|+++--.+ +.+..+. .|.. ..... ..... |. .
T Consensus 106 ~~l~i~sfDIE~~s~~gFP~p~~~~d~Ii~Is~~~~~~-----~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 179 (903)
T 3nae_A 106 TKIRVANFDIEVTSPDGFPEPSQAKHPIDAITHYDSID-----DRFYVFDLLNSPYG-NVEEWSIEIAAKLQEQGGDEVP 179 (903)
T ss_dssp GGSCEEEEEEEECCTTSSCCTTTCCSCEEEEEEEETTT-----TEEEEEEECEETTE-ECCCCCHHHHHSCGGGTCCCCC
T ss_pred CCCCEEEEEEEECCCCCCCCCCCCCCCEEEEEEEECCC-----CEEEEEECCCCCCC-CCCCCCCCCCCCCCCCCCCCCC
T ss_conf 63518999976788999998344789489999996379-----82899842576766-5211023445432223445565
Q ss_pred -----CCCCCCCCCCCHHHHHHHHHHHCCC-CEEEEECC-CCCCCEEEECHHCCC-------CCC---------------
Q ss_conf -----1232248521002344777530023-20231023-224311210000011-------222---------------
Q gi|254780818|r 67 -----DEFLKDKPSFSSIFSEFWDFFNEQN-AEWIAHNA-KFDVGFINAELQRIN-------KDP--------------- 117 (245)
Q Consensus 67 -----~~~l~~~p~f~ev~~~f~~fi~~~~-~~lVaHNa-~FD~~fL~~el~r~~-------~~~--------------- 117 (245)
+-.+...++-.+.+.+|++++...+ .+++|||. .||+.+|..-+.+.+ +.+
T Consensus 180 ~~~~~~v~~~~~~sE~eLL~~F~~~i~~~dPDII~GyN~~~FD~pYL~~R~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 259 (903)
T 3nae_A 180 SEIIDKIIYMPFDNEKELLMEYLNFWQQKTPVILTGWNVESFAIPYVYNRIKNIFGESTAKRLSPHRKTRVKVIENMYGS 259 (903)
T ss_dssp HHHHTTEEEEEESSHHHHHHHHHHHHHHTCCSEEECSSTTTTHHHHHHHHHHHHHCHHHHGGGSTTSCEEEEEEEETTEE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCC
T ss_conf 33468628996599999999999862505998999689877679999999998557632211254567652100002355
Q ss_pred -----CCCCHHCCCHHCCCCC--CCCCCCCHHHHHHHH-CCCCCCC--C------------CCCCHHHHHHHHHHHHHH
Q ss_conf -----2100001100000001--776422237899971-8754555--6------------664026999999999999
Q gi|254780818|r 118 -----LDPSRIIDTLSIARRK--HPSSRNDLNSLCKRY-GITISHR--S------------KHGALLDSHLLSDVYIKM 174 (245)
Q Consensus 118 -----~~~~~~iDTl~lar~~--~p~~~~~L~~l~~~~-~i~~~~r--~------------~H~Al~Da~~~a~v~~~l 174 (245)
+....++|.+.+.+.. ....+++|+.++..+ |...... . .--.+.||.++.+++..+
T Consensus 260 ~~~~~i~G~~~lD~~~l~~k~~~~~~~sy~Ld~va~~~Lg~~k~~~~~~~~~~~~~~~~~~~~Y~~~D~~L~~~L~~kl 338 (903)
T 3nae_A 260 REIITLFGISVLDYIDLYKKFSFTNQPSYSLDYISEFELNVGKLKYDGPISKLRESNHQRYISYNIIAVYRVLQIDAKR 338 (903)
T ss_dssp EEEEEETTCEECCHHHHHHHHSCCCCSCCCHHHHHHHHHCCCCCCCSSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEECEEEEEHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 3146660436752899999987602011239999999728887644210323304678889887432799999999998