Query gi|254780818|ref|YP_003065231.1| DNA polymerase III subunit epsilon [Candidatus Liberibacter asiaticus str. psy62] Match_columns 245 No_of_seqs 190 out of 3233 Neff 7.0 Searched_HMMs 23785 Date Mon May 30 12:56:46 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780818.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 2gui_A DNA polymerase III epsi 100.0 4.4E-40 1.8E-44 269.1 9.8 174 3-179 5-186 (194) 2 2p1j_A POLIII, DNA polymerase 100.0 2.6E-39 1.1E-43 264.3 9.1 169 7-182 12-180 (186) 3 2is3_A Ribonuclease T; RNAse, 100.0 2.4E-38 1E-42 258.2 8.2 175 5-181 15-204 (215) 4 2ioc_B Three prime repair exon 100.0 4.4E-36 1.8E-40 244.1 4.2 169 4-176 8-213 (242) 5 1y97_A Three prime repair exon 100.0 4.8E-35 2E-39 237.6 4.3 169 5-176 8-208 (238) 6 2xri_A ERI1 exoribonuclease 3; 100.0 3.6E-34 1.5E-38 232.1 7.9 170 8-180 32-216 (224) 7 3cg7_A CRN-4, cell death-relat 100.0 1.1E-33 4.7E-38 229.0 8.6 173 8-183 20-214 (308) 8 1zbh_A 3'-5' exonuclease ERI1; 100.0 1.9E-33 8.1E-38 227.6 8.4 173 8-183 79-268 (299) 9 1wlj_A Interferon stimulated g 100.0 4.7E-34 2E-38 231.4 5.1 158 8-175 6-166 (189) 10 1zbu_A ERI-1 homolog, 3'-5' ex 100.0 1.1E-33 4.8E-38 229.0 5.3 173 9-184 130-319 (349) 11 2qxf_A Exodeoxyribonuclease I; 100.0 9.5E-33 4E-37 223.2 7.8 173 1-176 1-199 (482) 12 2f96_A Ribonuclease T; RNAse, 100.0 6.5E-32 2.7E-36 218.0 6.0 173 10-183 32-218 (224) 13 1w0h_A 3'-5' exonuclease ERI1; 100.0 2.5E-30 1.1E-34 208.1 8.6 175 8-183 11-200 (204) 14 2gbz_A Oligoribonuclease; ORN, 99.8 5.8E-22 2.5E-26 155.8 3.9 152 8-173 10-176 (194) 15 2igi_A Oligoribonuclease; RNAs 99.8 3.7E-21 1.6E-25 150.8 3.0 157 8-174 6-173 (180) 16 1x9m_A DNA polymerase; DNA plo 99.4 2.9E-13 1.2E-17 101.5 5.1 138 10-177 2-182 (698) 17 2kfn_A Klenow fragment of DNA 99.2 4E-11 1.7E-15 88.1 7.2 117 7-149 26-143 (605) 18 2hhv_A DNA polymerase I; DNA r 99.0 9.6E-10 4E-14 79.5 6.3 131 8-176 18-167 (580) 19 2d5r_A CCR4-NOT transcription 98.8 9.8E-09 4.1E-13 73.2 5.6 169 8-178 25-235 (252) 20 1yt3_A Ribonuclease D, RNAse D 98.6 6E-08 2.5E-12 68.3 6.7 136 7-180 22-172 (375) 21 3d45_A Poly(A)-specific ribonu 98.6 7.8E-08 3.3E-12 67.6 7.1 88 88-176 273-390 (507) 22 2a1r_A Poly(A)-specific ribonu 98.6 3.2E-07 1.3E-11 63.7 9.4 87 89-176 279-395 (430) 23 2gv9_A DNA polymerase; polymer 98.5 7.8E-07 3.3E-11 61.3 10.0 167 6-174 319-550 (1193) 24 1uoc_A POP2; hydrolase, DEDD n 98.5 1.6E-07 6.7E-12 65.6 5.4 167 7-176 38-263 (289) 25 2p51_A SPCC18.06C protein; DED 98.3 6.7E-07 2.8E-11 61.7 5.9 168 7-176 45-254 (333) 26 3iay_A DNA polymerase delta ca 98.3 1.1E-06 4.8E-11 60.3 6.9 157 6-173 248-464 (919) 27 2hbj_A Exosome complex exonucl 98.3 1.5E-06 6.5E-11 59.5 7.1 133 6-176 105-252 (410) 28 3cym_A Uncharacterized protein 98.1 3.9E-06 1.7E-10 56.9 5.1 129 9-176 40-185 (440) 29 1qht_A Protein (DNA polymerase 98.0 2E-05 8.3E-10 52.5 7.3 150 5-174 133-326 (775) 30 2py5_A DNA polymerase; protein 97.8 3.3E-05 1.4E-09 51.1 6.5 134 7-175 6-181 (575) 31 3k59_A POL II, DNA polymerase 97.7 0.00023 9.5E-09 45.9 9.0 151 6-174 152-349 (786) 32 2e6m_A Werner syndrome ATP-dep 97.6 0.00012 5E-09 47.7 6.4 88 83-176 88-193 (208) 33 1s5j_A DNA polymerase I; repli 97.5 0.00021 8.9E-09 46.1 6.7 154 6-170 189-385 (847) 34 3m8r_A DNA polymerase I, therm 97.2 0.00056 2.4E-08 43.5 5.4 125 14-176 2-126 (540) 35 3nae_A DNA polymerase, GP43; R 96.5 0.0014 6E-08 40.9 3.4 164 5-174 106-338 (903) 36 1vk0_A Hypothetical protein; h 95.9 0.0026 1.1E-07 39.3 2.0 90 80-175 97-204 (206) 37 3ikm_A DNA polymerase subunit 94.0 0.014 5.9E-07 34.7 1.2 82 90-175 193-344 (1172) 38 1noy_A Protein (DNA polymerase 93.5 0.065 2.7E-06 30.6 4.0 165 5-174 104-335 (388) 39 1bgx_T TAQ DNA polymerase; DNA 92.3 0.078 3.3E-06 30.1 3.0 72 94-176 347-418 (832) 40 2dfa_A Hypothetical UPF0271 pr 32.7 18 0.00077 15.3 2.0 38 138-175 91-132 (250) 41 1v6t_A Hypothetical UPF0271 pr 28.2 18 0.00075 15.3 1.3 38 138-175 91-132 (255) 42 2x5e_A UPF0271 protein PA4511; 28.0 21 0.00087 14.9 1.6 85 78-175 49-138 (252) 43 1xw8_A UPF0271 protein YBGL; N 25.2 22 0.00092 14.8 1.3 39 137-175 85-127 (252) 44 3dao_A Putative phosphatse; st 20.3 37 0.0016 13.3 1.8 24 1-24 15-38 (283) No 1 >2gui_A DNA polymerase III epsilon subunit; DNA polymerase proofreading domain, transferase; HET: DNA U5P; 1.60A {Escherichia coli} SCOP: c.55.3.5 PDB: 1j54_A* 1j53_A* 2ido_A* Probab=100.00 E-value=4.4e-40 Score=269.05 Aligned_cols=174 Identities=44% Similarity=0.782 Sum_probs=156.4 Q ss_pred CCCCCCEEEEECCCCCCCCC-----CCEEEEEEEEEEECCEECCCEEEEEECCCCCCCCHHHEEECCCCCCCCCCCCCCC Q ss_conf 66777589998467888888-----8889999999999998803137989858882288657242021012322485210 Q gi|254780818|r 3 RKNKMRKIVFDIETTGLDSK-----NDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFS 77 (245) Q Consensus 3 ~~~~mr~iv~D~ETTGl~~~-----~d~Iieigav~i~~~~~~~~~f~~~i~P~~~~i~~~~~~ihGIt~~~l~~~p~f~ 77 (245) ...++|+||||||||||+|. .|||||||||++.++..++++|+.+|+|. .++.+.+.++|||+++++.++|+|. T Consensus 5 ~~~~~r~vv~D~ETTGl~~~~~~~~~drIieigav~~~~~~~~~~~~~~~v~P~-~~~~~~~~~i~gi~~e~~~~~~~~~ 83 (194) T 2gui_A 5 STAITRQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPD-RLVDPEAFGVHGIADEFLLDKPTFA 83 (194) T ss_dssp ---CCEEEEEEEEESCCCSSSSTTTTCCEEEEEEEEEETTEECSCCEEEECCCS-SCCCHHHHHHHCCCHHHHTTSCCHH T ss_pred CCCCCCEEEEEEECCCCCCCCCCCCCCEEEEEEEEEEECCEEECEEEEEEECCC-CCCCHHHHHHHCCCHHHHHHHHHHH T ss_conf 878883799997379998764567895499999999999999740789998999-8655778987075576643345589 Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCCEEEECHHCCCCCCCC---CCHHCCCHHCCCCCCCCCCCCHHHHHHHHCCCCCC Q ss_conf 023447775300232023102322431121000001122221---00001100000001776422237899971875455 Q gi|254780818|r 78 SIFSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLD---PSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISH 154 (245) Q Consensus 78 ev~~~f~~fi~~~~~~lVaHNa~FD~~fL~~el~r~~~~~~~---~~~~iDTl~lar~~~p~~~~~L~~l~~~~~i~~~~ 154 (245) +++.+|.+|++ +.++|+||+.||..+++..+.+++.+... .+.++|++.++|..+|+.+++|+.||.+|+++..+ T Consensus 84 ~v~~~~~~~l~--~~~~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~p~~~~~L~~l~~~~~i~~~~ 161 (194) T 2gui_A 84 EVADEFMDYIR--GAELVIHNAAFDIGFMDYEFSLLKRDIPKTNTFCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSK 161 (194) T ss_dssp HHHHHHHHHHT--TSEEEETTHHHHHHHHHHHHHHTCSCCCCGGGTSEEEEHHHHHHHHSTTSCCSHHHHHHHTTCCCTT T ss_pred HHHHHHHHHHC--CCEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEHHHHHHHHCCCCCCCHHHHHHHCCCCCCC T ss_conf 98899998708--9738997851319999999998099976555442000199999997489878899999985999899 Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCC Q ss_conf 5666402699999999999973057 Q gi|254780818|r 155 RSKHGALLDSHLLSDVYIKMMVGGS 179 (245) Q Consensus 155 r~~H~Al~Da~~~a~v~~~ll~g~~ 179 (245) +++|+||+||++|++||++|++|+. T Consensus 162 ~~~H~Al~Da~~t~~l~~~m~~~~~ 186 (194) T 2gui_A 162 RTLHGALLDAQILAEVYLAMTGGQT 186 (194) T ss_dssp CSSCCHHHHHHHHHHHHHHHTC--- T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCH T ss_conf 9874889999999999999977855 No 2 >2p1j_A POLIII, DNA polymerase III POLC-type; structural genomics, exonuclease, PSI-2, protein structure initiative; HET: DNA; 2.50A {Thermotoga maritima MSB8} Probab=100.00 E-value=2.6e-39 Score=264.29 Aligned_cols=169 Identities=29% Similarity=0.462 Sum_probs=151.1 Q ss_pred CCEEEEECCCCCCCCCCCEEEEEEEEEEECCEECCCEEEEEECCCCCCCCHHHEEECCCCCCCCCCCCCCCHHHHHHHHH Q ss_conf 75899984678888888889999999999998803137989858882288657242021012322485210023447775 Q gi|254780818|r 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDF 86 (245) Q Consensus 7 mr~iv~D~ETTGl~~~~d~Iieigav~i~~~~~~~~~f~~~i~P~~~~i~~~~~~ihGIt~~~l~~~p~f~ev~~~f~~f 86 (245) .++||||+|||||+|.+|+|||||+|.+.++.++ ++|+.+|+|+ .++++.+.++|||+++++.++|+|.+++++|.+| T Consensus 12 ~~yvviD~ETTGl~~~~~~Iieig~v~~~~~~i~-~~~~~~v~p~-~~~~~~~~~i~gi~~~~~~~~~~~~~~~~~~~~~ 89 (186) T 2p1j_A 12 ATFVVLDFETTGLDPQVDEIIEIGAVKIQGGQIV-DEYHTLIKPS-REISRKSSEITGITQEMLENKRSIEEVLPEFLGF 89 (186) T ss_dssp -CEEEEEEEESCSCTTTCCEEEEEEEEEETTEEE-EEEEEECBCS-SCCCHHHHHHHCCCHHHHTTCCBHHHHHHHHHHH T ss_pred CCEEEEEEECCCCCCCCCEEEEEEEEEEECCEEE-EEEEEEECCC-CCCCHHHHHHCCCCHHHCCCCCHHHHHHHHHHHH T ss_conf 8499999872899999986899999999899687-7889986688-7689899987098756500212199999999974 Q ss_pred HHCCCCEEEEECCCCCCCEEEECHHCCCCCCCCCCHHCCCHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHH Q ss_conf 30023202310232243112100000112222100001100000001776422237899971875455566640269999 Q gi|254780818|r 87 FNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHL 166 (245) Q Consensus 87 i~~~~~~lVaHNa~FD~~fL~~el~r~~~~~~~~~~~iDTl~lar~~~p~~~~~L~~l~~~~~i~~~~r~~H~Al~Da~~ 166 (245) ++ +.++||||+.||++||++++.+.+...+ .++++||+.+++.++|..+++|+++|++||++.. ++|+|+.||.+ T Consensus 90 ~~--~~~~v~hn~~fD~~~L~~~~~~~~~~~~-~~~~id~~~~~~~~~~~~~~~L~~l~~~~gi~~~--~~H~Al~Da~~ 164 (186) T 2p1j_A 90 LE--DSIIVAHNANFDYRFLRLWIKKVMGLDW-ERPYIDTLALAKSLLKLRSYSLDSVVEKLGLGPF--RHHRALDDARV 164 (186) T ss_dssp SS--SCEEEETTHHHHHHHHHHHHHHHHCCCC-CCCEEEHHHHHHHHTCCSCCSHHHHHHHTTCCST--TCCHHHHHHHH T ss_pred CC--CCEEEEECHHHHHHHHHHHHHHHCCCCC-CCCCCCHHHHHHHHCCCCCCCHHHHHHHCCCCCC--CCCCHHHHHHH T ss_conf 69--9989997789879999999998449876-6762020999998656789889999998699989--89788999999 Q ss_pred HHHHHHHHHHCCCCCC Q ss_conf 9999999973057666 Q gi|254780818|r 167 LSDVYIKMMVGGSQIN 182 (245) Q Consensus 167 ~a~v~~~ll~g~~q~~ 182 (245) |++||.+|+...++.| T Consensus 165 t~~l~~~l~~~~k~~G 180 (186) T 2p1j_A 165 TAQVFLRFVEMMKKEG 180 (186) T ss_dssp HHHHHHHHTTCC---- T ss_pred HHHHHHHHHHHHHHCC T ss_conf 9999999999998249 No 3 >2is3_A Ribonuclease T; RNAse, exoribonuclease, exonuclease, hydrolase, stable RNA maturation, tRNA END-turnover; 3.10A {Escherichia coli K12} Probab=100.00 E-value=2.4e-38 Score=258.24 Aligned_cols=175 Identities=25% Similarity=0.383 Sum_probs=144.2 Q ss_pred CCCCEEEEECCCCCCCCCCCEEEEEEEEEEEC----CEECCCEEEEEECC-CCCCCCHHHEEECCCCCCC-CCCCCCCCH Q ss_conf 77758999846788888888899999999999----98803137989858-8822886572420210123-224852100 Q gi|254780818|r 5 NKMRKIVFDIETTGLDSKNDRIIEIGAVELLD----YSKTNRTFQVFLCP-NGRKNSPEALKLHGITDEF-LKDKPSFSS 78 (245) Q Consensus 5 ~~mr~iv~D~ETTGl~~~~d~Iieigav~i~~----~~~~~~~f~~~i~P-~~~~i~~~~~~ihGIt~~~-l~~~p~f~e 78 (245) .+++.||||+|||||+|..|+|||||||.+.. ....+++|+.+++| ...++++++.+||||+++. +.+++++.+ T Consensus 15 ~~~~~Vv~D~ETTGl~p~~d~IIeIgav~i~~~~~~~~~~~~~~~~~~~p~~~~~i~~~~~~i~gi~~~~~~~~~~~~~~ 94 (215) T 2is3_A 15 RGFYPVVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNGIDPNDPDRGAVSEYE 94 (215) T ss_dssp TTEEEEEEEEEESSSCTTTSCEEEEEEEEEEECTTSCEEEEEEEEEEBCCCTTCCCCHHHHHHHCCCTTCSTTCCBCHHH T ss_pred CCCCEEEEEEECCCCCCCCCCCEEEEEEEEEECCCCCEECCCEEEEEECCCCCCCCCHHHHHHHCCCHHHHHHCCCCHHH T ss_conf 28985999837999999998328999999895688868335359998526889998856876025213878707986125 Q ss_pred HHHHHHHHHH-------CCCCEEEEECCCCCCCEEEECHHCCCCCC--CCCCHHCCCHHCCCCCCCCCCCCHHHHHHHHC Q ss_conf 2344777530-------02320231023224311210000011222--21000011000000017764222378999718 Q gi|254780818|r 79 IFSEFWDFFN-------EQNAEWIAHNAKFDVGFINAELQRINKDP--LDPSRIIDTLSIARRKHPSSRNDLNSLCKRYG 149 (245) Q Consensus 79 v~~~f~~fi~-------~~~~~lVaHNa~FD~~fL~~el~r~~~~~--~~~~~~iDTl~lar~~~p~~~~~L~~l~~~~~ 149 (245) ++.++.+++. ..++++||||++||++||++++.|+|.+. +....++||+.+++..++ +++|+.+|.+|| T Consensus 95 ~~~~~~~~i~~~~~~~~~~~~~lVaHNa~FD~~fL~~~~~r~~l~~~~~~~~~~iDt~~~~~~~~~--~~~L~~l~~~~~ 172 (215) T 2is3_A 95 ALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLKRNPFHPFATFDTAALAGLALG--QTVLSKACQTAG 172 (215) T ss_dssp HHHHHHHHHHHHHHHHTCSEEEEEETTHHHHHHHHHHHHHHHTCTTCCEEEEEEEEHHHHHHHHHS--CCSHHHHHHHTT T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHC--CCCHHHHHHHCC T ss_conf 359999999999876314655010037687699999999983999886533016779999988736--324999999859 Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC Q ss_conf 75455566640269999999999997305766 Q gi|254780818|r 150 ITISHRSKHGALLDSHLLSDVYIKMMVGGSQI 181 (245) Q Consensus 150 i~~~~r~~H~Al~Da~~~a~v~~~ll~g~~q~ 181 (245) ++.+++++|+||+||++||+||.+|+...++. T Consensus 173 i~~~~~~~H~Al~Da~~ta~lf~~l~~~~~~~ 204 (215) T 2is3_A 173 MDFDSTQAHSALYDTERTAVLFCEIVNRWKRL 204 (215) T ss_dssp CCCCTTTTTCHHHHHHHHHHHHHHHHHHHHHT T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC T ss_conf 99999976786999999999999999999975 No 4 >2ioc_B Three prime repair exonuclease 1; proline helix, nucleotide complex, DNAQ family, hydrolase; HET: D5M; 2.10A {Mus musculus} SCOP: c.55.3.5 PDB: 3b6o_A* 2o4g_A* 3b6p_A* 2o4i_A 2oa8_A Probab=100.00 E-value=4.4e-36 Score=244.10 Aligned_cols=169 Identities=20% Similarity=0.282 Sum_probs=130.7 Q ss_pred CCCCC-EEEEECCCCCCCCCCCEEEEEEEEEEECCEE------------------CCCEEEEEECCCCCCCCHHHEEECC Q ss_conf 67775-8999846788888888899999999999988------------------0313798985888228865724202 Q gi|254780818|r 4 KNKMR-KIVFDIETTGLDSKNDRIIEIGAVELLDYSK------------------TNRTFQVFLCPNGRKNSPEALKLHG 64 (245) Q Consensus 4 ~~~mr-~iv~D~ETTGl~~~~d~Iieigav~i~~~~~------------------~~~~f~~~i~P~~~~i~~~~~~ihG 64 (245) ...|+ +||||||||||++.+|+|||||||.+.+... +.+.|+.+|||. ++|++++.+||| T Consensus 8 ~~~~~t~v~~D~ETTGl~~~~~~Iieia~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~lv~P~-~~I~~~a~~ihG 86 (242) T 2ioc_B 8 HGHMQTLIFLDLEATGLPSSRPEVTELCLLAVHRRALENTSISQGHPPPVPRPPRVVDKLSLCIAPG-KACSPGASEITG 86 (242) T ss_dssp CCCCSEEEEEEEEESSCGGGCCCEEEEEEEEEEHHHHHTSCCCCSSSCCCCCCCSSCEEEEEECCCS-SCCCHHHHHHHC T ss_pred CCCCCEEEEEEEECCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHEECCC-CCCCHHHHHHCC T ss_conf 9888859999988899699998768999999876753465222111113566541101233012889-979988998629 Q ss_pred CCCCCCCCC--CCCCH----HHHHHHHHHHCCCCEEEEECC-CCCCCEEEECHHCCCCCCCC-CCHHCCCHHCCCCCCCC Q ss_conf 101232248--52100----234477753002320231023-22431121000001122221-00001100000001776 Q gi|254780818|r 65 ITDEFLKDK--PSFSS----IFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLD-PSRIIDTLSIARRKHPS 136 (245) Q Consensus 65 It~~~l~~~--p~f~e----v~~~f~~fi~~~~~~lVaHNa-~FD~~fL~~el~r~~~~~~~-~~~~iDTl~lar~~~p~ 136 (245) ||+++|.++ |.|.+ ++..|.++.. .+.++||||+ .||.+||++++.|+|..... ...++||+.++|.+++. T Consensus 87 It~~~l~~~~~~~~~~~~~~~~~~f~~~~~-~~~~lVahN~~~FD~~~L~~~~~r~~~~~~~~~~~~iDtl~~~~~~~~~ 165 (242) T 2ioc_B 87 LSKAELEVQGRQRFDDNLAILLRAFLQRQP-QPCCLVAHNGDRYDFPLLQTELARLSTPSPLDGTFCVDSIAALKALEQA 165 (242) T ss_dssp CCHHHHHHTTCCCSCHHHHHHHHHHHHTSC-SSEEEEETTTTTTHHHHHHHHHHTSSSCCTTTTCEEEEHHHHHHHHHHT T ss_pred CCHHHHHHCCCCHHHHHHHHHHHHHHHHCC-CCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCEEEEHHHHHHHHHHC T ss_conf 999999720155056899998999997416-8855998354788999999999985998887788687789999997032 Q ss_pred ---------CCCCHHHHHHHH-CCCCCCCCCCCCHHHHHHHHHHHHHHHH Q ss_conf ---------422237899971-8754555666402699999999999973 Q gi|254780818|r 137 ---------SRNDLNSLCKRY-GITISHRSKHGALLDSHLLSDVYIKMMV 176 (245) Q Consensus 137 ---------~~~~L~~l~~~~-~i~~~~r~~H~Al~Da~~~a~v~~~ll~ 176 (245) .+++|++||++| |++.. ++|+|++||.+|++||+.+.. T Consensus 166 ~~~~~~~~~~~~~L~~l~~~~~g~~~~--~aH~Al~Da~~t~~l~~~~~~ 213 (242) T 2ioc_B 166 SSPSGNGSRKSYSLGSIYTRLYWQAPT--DSHTAEGDVLTLLSICQWKPQ 213 (242) T ss_dssp C-------CCCCCHHHHHHHHHSSCCS--STTSHHHHHHHHHHHHTSSHH T ss_pred CCCCCCCCCCCCCHHHHHHHHCCCCCC--CCCCHHHHHHHHHHHHHHHHH T ss_conf 422246776685689999997499998--783889999999999999999 No 5 >1y97_A Three prime repair exonuclease 2; TREX2, hydrolase; 2.50A {Homo sapiens} SCOP: c.55.3.5 Probab=100.00 E-value=4.8e-35 Score=237.59 Aligned_cols=169 Identities=24% Similarity=0.318 Sum_probs=133.8 Q ss_pred CCCCEEEEECCCCCCCCCCCEEEEEEEEEEECCE---------------ECCCEEEEEECCCCCCCCHHHEEECCCCCCC Q ss_conf 7775899984678888888889999999999998---------------8031379898588822886572420210123 Q gi|254780818|r 5 NKMRKIVFDIETTGLDSKNDRIIEIGAVELLDYS---------------KTNRTFQVFLCPNGRKNSPEALKLHGITDEF 69 (245) Q Consensus 5 ~~mr~iv~D~ETTGl~~~~d~Iieigav~i~~~~---------------~~~~~f~~~i~P~~~~i~~~~~~ihGIt~~~ 69 (245) +...+||||+||||+++..|+|||||||.+.+.. .+.+.|+.||+|. +++++.+.+|||||+++ T Consensus 8 ~~~~~vvlD~ETTGl~~~~~~Iiei~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~P~-~~i~~~~~~i~git~~~ 86 (238) T 1y97_A 8 RAETFVFLDLEATGLPSVEPEIAELSLFAVHRSSLENPEHDESGALVLPRVLDKLTLCMCPE-RPFTAKASEITGLSSEG 86 (238) T ss_dssp CCSEEEEEEEEESSCGGGCCCEEEEEEEEEEHHHHTSCBC---CCCBCCSSCEEEEEECCCS-SCCCHHHHHHHCCCHHH T ss_pred CCCEEEEEEEECCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCEECCEEEEECCC-CCCCHHHHHHCCCCHHH T ss_conf 89979999988189899998669999999989952223100002456662102135788889-98998899860899999 Q ss_pred CCCCCC--CC----HHHHHHHHHHHCCCCEEEEECC-CCCCCEEEECHHCCCCCCCCCCHHCCCHHCCCCCCC------- Q ss_conf 224852--10----0234477753002320231023-224311210000011222210000110000000177------- Q gi|254780818|r 70 LKDKPS--FS----SIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHP------- 135 (245) Q Consensus 70 l~~~p~--f~----ev~~~f~~fi~~~~~~lVaHNa-~FD~~fL~~el~r~~~~~~~~~~~iDTl~lar~~~p------- 135 (245) |.+++. +. +++..|.+++. .+.++||||+ .||..||+++|.|+|..+.....++||+.++|.+.+ T Consensus 87 l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~hn~~~FD~~~L~~~~~r~~~~~~~~~~~iDtl~~~~~l~~~~~~~~~ 165 (238) T 1y97_A 87 LARCRKAGFDGAVVRTLQAFLSRQA-GPICLVAHNGFDYDFPLLCAELRRLGARLPRDTVCLDTLPALRGLDRAHSHGTR 165 (238) T ss_dssp HHHTTCCCSCHHHHHHHHHHHTTSC-SSEEEEETTTTTTHHHHHHHHHHHHTCCCCTTCEEEEHHHHHHHHHHHC----- T ss_pred HHHCCCCCHHHHHHHHHHHHHHHCC-CCCEEEEECCHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHCCCCCCC T ss_conf 9853153058999999999887416-882699965187789999999998089888898787789999997350754445 Q ss_pred --C-CCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHH Q ss_conf --6-4222378999718754555666402699999999999973 Q gi|254780818|r 136 --S-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 (245) Q Consensus 136 --~-~~~~L~~l~~~~~i~~~~r~~H~Al~Da~~~a~v~~~ll~ 176 (245) + .+.+|++||++|+... ..++|+|+.||++|++||++|.. T Consensus 166 ~~~~~~~~L~~l~~~~~~~~-~~~aH~Al~Da~~t~~i~~~l~~ 208 (238) T 1y97_A 166 ARGRQGYSLGSLFHRYFRAE-PSAAHSAEGDVHTLLLIFLHRAA 208 (238) T ss_dssp -----CCSHHHHHHHHHSSC-CC---CHHHHHHHHHHHHHHTHH T ss_pred CCCCCCCCHHHHHHHHCCCC-CCCCCCHHHHHHHHHHHHHHHHH T ss_conf 66668858999999964999-89788989999999999999999 No 6 >2xri_A ERI1 exoribonuclease 3; hydrolase, metal binding; 2.15A {Homo sapiens} Probab=100.00 E-value=3.6e-34 Score=232.12 Aligned_cols=170 Identities=16% Similarity=0.237 Sum_probs=140.4 Q ss_pred CEEEEECCCCCCCCCC--CEEEEEEEEEEEC-CEECCCEEEEEECCC-CCCCCHHHEEECCCCCCCCCCCCCCCHHHHHH Q ss_conf 5899984678888888--8899999999999-988031379898588-82288657242021012322485210023447 Q gi|254780818|r 8 RKIVFDIETTGLDSKN--DRIIEIGAVELLD-YSKTNRTFQVFLCPN-GRKNSPEALKLHGITDEFLKDKPSFSSIFSEF 83 (245) Q Consensus 8 r~iv~D~ETTGl~~~~--d~Iieigav~i~~-~~~~~~~f~~~i~P~-~~~i~~~~~~ihGIt~~~l~~~p~f~ev~~~f 83 (245) ++||+|+||||+++.. ++|||||||.+.+ ...+.++|++||+|. ..++++.+.++||||++++.++|+|.+|+++| T Consensus 32 ~~vv~D~EtTg~~~~~~~~eIIEiGaV~~d~~~~~i~~~f~~~vkP~~~~~i~~~~~~itgIt~e~l~~a~~~~ev~~~f 111 (224) T 2xri_A 32 YFLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTGIIQAMVDGQPSLQQVLERV 111 (224) T ss_dssp EEEEECCEECCCC-CCSSCCEEEEEEEEEETTTCCEEEEEEEECCCSSSCSCCHHHHHHHCCCHHHHTTCCCHHHHHHHH T ss_pred EEEEEEEECCCCCCCCCCCCEEEEEEEEEECCCCEEEEEEEEEECCCCCCCCCHHHHEECCCCHHHCCCCCCHHHHHHHH T ss_conf 89999983689999889781899999999899986988999999979888789678153011356511346377789999 Q ss_pred HHHHHCCCCEEEEECC--------CCCCC-EEEECHHCCCCCCCC-CCHHCCCHHCCCCCCCCC-CCCHHHHHHHHCCCC Q ss_conf 7753002320231023--------22431-121000001122221-000011000000017764-222378999718754 Q gi|254780818|r 84 WDFFNEQNAEWIAHNA--------KFDVG-FINAELQRINKDPLD-PSRIIDTLSIARRKHPSS-RNDLNSLCKRYGITI 152 (245) Q Consensus 84 ~~fi~~~~~~lVaHNa--------~FD~~-fL~~el~r~~~~~~~-~~~~iDTl~lar~~~p~~-~~~L~~l~~~~~i~~ 152 (245) .+|++ +..+++||+ +||.. |+..++.+.+.+... ...++|+..+++..+|.. +++|+++|++|||+. T Consensus 112 ~~~l~--~~~lv~~~~~~~~~~~~~fD~~~~l~~~~~~~~~~~p~~~~~~iD~~~~~~~~~~~~~~~~L~~l~~~~gi~~ 189 (224) T 2xri_A 112 DEWMA--KEGLLDPNVKSIFVTCGDWDLKVMLPGQCQYLGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNKGLSLQH 189 (224) T ss_dssp HHHHH--HTTTTSTTSCEEEEESSSHHHHTHHHHHHHHHTCCCCGGGSCEEEHHHHHHHHHTSCCTTTHHHHHHHTTCCC T ss_pred HHHHC--CCEEEEECCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCEEEHHHHHHHHHHCCCCCCCHHHHHHHCCCCC T ss_conf 99965--8859940552799965166657899999997499987434312349999999718777876999999869999 Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCC Q ss_conf 5556664026999999999999730576 Q gi|254780818|r 153 SHRSKHGALLDSHLLSDVYIKMMVGGSQ 180 (245) Q Consensus 153 ~~r~~H~Al~Da~~~a~v~~~ll~g~~q 180 (245) .. ++|+|+.||.+||+||++|+..|.. T Consensus 190 ~~-~~H~Al~DA~~ta~l~~~Ll~~g~~ 216 (224) T 2xri_A 190 IG-RPHSGIDDCKNIANIMKTLAYRGFI 216 (224) T ss_dssp CS-CTTCHHHHHHHHHHHHHHHHHTTCC T ss_pred CC-CCCCHHHHHHHHHHHHHHHHHCCCC T ss_conf 99-8738599999999999999977982 No 7 >3cg7_A CRN-4, cell death-related nuclease 4; hydrolase, apoptosis, 3'-5' exonuclease, deddh; 2.50A {Caenorhabditis elegans} PDB: 3cm5_A 3cm6_A Probab=100.00 E-value=1.1e-33 Score=229.04 Aligned_cols=173 Identities=14% Similarity=0.265 Sum_probs=137.0 Q ss_pred CEEEEECCCCCCCCCCC---EEEEEEEEEEEC--C-EECCCEEEEEECCC-CCCCCHHHEEECCCCCCCCCCCCCCCHHH Q ss_conf 58999846788888888---899999999999--9-88031379898588-82288657242021012322485210023 Q gi|254780818|r 8 RKIVFDIETTGLDSKND---RIIEIGAVELLD--Y-SKTNRTFQVFLCPN-GRKNSPEALKLHGITDEFLKDKPSFSSIF 80 (245) Q Consensus 8 r~iv~D~ETTGl~~~~d---~Iieigav~i~~--~-~~~~~~f~~~i~P~-~~~i~~~~~~ihGIt~~~l~~~p~f~ev~ 80 (245) .+||||+||||+++..| +|||||||.++. + +....+|++||+|. ..++++.+.++||||+++|.++|+|.+|+ T Consensus 20 ~~vViD~ETTg~~~~~d~~~EIIEIgaV~vd~~~~~i~~~~~F~~~VkP~~~~~ls~~~~~ltGIt~e~v~~ap~f~evl 99 (308) T 3cg7_A 20 TLLILDFETTSDAANQDYPCEVIQFAIVAYDVPNDKIREDISFNKYVKPVLNRTLTKNCVDFTGIPQRSIDTADTFDVVY 99 (308) T ss_dssp EEEEEEEEECCBTTBCSCCCCEEEEEEEEEETTTTEEEEEEEEEEECBCSSBCSCCHHHHHHHCCCHHHHHTSCBHHHHH T ss_pred EEEEEEEEECCCCCCCCCCCEEEEEEEEEEEECCCEEEECCEEEEEECCCCCCCCCHHHHHHCCCCHHHHHCCCHHHHHH T ss_conf 18999976089987889996079999999980599897841888778988888679889987197989943110045668 Q ss_pred HHHHHHHHCCCCEEEEE------CCCCCC-CEEEECHHCCCCCCCC-CCHHCCCHHCCCCCC-------CCCCCCHHHHH Q ss_conf 44777530023202310------232243-1121000001122221-000011000000017-------76422237899 Q gi|254780818|r 81 SEFWDFFNEQNAEWIAH------NAKFDV-GFINAELQRINKDPLD-PSRIIDTLSIARRKH-------PSSRNDLNSLC 145 (245) Q Consensus 81 ~~f~~fi~~~~~~lVaH------Na~FD~-~fL~~el~r~~~~~~~-~~~~iDTl~lar~~~-------p~~~~~L~~l~ 145 (245) ++|.+|++. ..+++| |+.||. .||++++.+.+++.+. ...++|+..+++..+ ++.+.+|+++| T Consensus 100 ~~f~~~l~~--~~l~~~~~~f~~~~~~D~~~~L~~~~~~~~i~~P~~~~~~iDl~~~~~~~~~~~~~~~~~~~~~L~~l~ 177 (308) T 3cg7_A 100 EQFQQWLIT--LGLEEGKFAFVCDSRQDLWRIAQYQMKLSNIQMPAFFRQYINLYKIFTNEMDRMGPKELSATTNIGKMN 177 (308) T ss_dssp HHHHHHHHH--HCCCTTSEEEEESSSHHHHTHHHHHHHHTTCCCCGGGSEEEEHHHHHHHHHHHHCCCCCCCCSHHHHHH T ss_pred HHHHHHHHC--CCCCCEEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCEEEHHHHHHHHHHHHHHCCCCCCCCHHHHH T ss_conf 899999736--773232899931545669999999999809998720132445999999999974322777777899999 Q ss_pred HHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCC Q ss_conf 97187545556664026999999999999730576666 Q gi|254780818|r 146 KRYGITISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 (245) Q Consensus 146 ~~~~i~~~~r~~H~Al~Da~~~a~v~~~ll~g~~q~~l 183 (245) .+|||+.+. ++|+||.||++||+|+++|+..|-...+ T Consensus 178 ~~~gI~~~g-~aH~ALdDA~~tA~Il~kLl~~G~~~~~ 214 (308) T 3cg7_A 178 EYYDLPTIG-RAHDAMDDCLNIATILQRMINMGAKVTV 214 (308) T ss_dssp HHTTCCCCS-CTTCHHHHHHHHHHHHHHHHHTTCCCCC T ss_pred HHCCCCCCC-CCCCHHHHHHHHHHHHHHHHHCCCCCCC T ss_conf 976999999-8968099999999999999977992586 No 8 >1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens} Probab=100.00 E-value=1.9e-33 Score=227.57 Aligned_cols=173 Identities=20% Similarity=0.288 Sum_probs=138.2 Q ss_pred CEEEEECCCC---CCCC-CCCEEEEEEEEEEECC-EECCCEEEEEECCC-CCCCCHHHEEECCCCCCCCCCCCCCCHHHH Q ss_conf 5899984678---8888-8888999999999999-88031379898588-822886572420210123224852100234 Q gi|254780818|r 8 RKIVFDIETT---GLDS-KNDRIIEIGAVELLDY-SKTNRTFQVFLCPN-GRKNSPEALKLHGITDEFLKDKPSFSSIFS 81 (245) Q Consensus 8 r~iv~D~ETT---Gl~~-~~d~Iieigav~i~~~-~~~~~~f~~~i~P~-~~~i~~~~~~ihGIt~~~l~~~p~f~ev~~ 81 (245) .+||||+||| |..+ ..++|||||||.|..+ ..+.++|++||+|. ..++++++.++||||+++|.+||+|.+|++ T Consensus 79 ~~vv~D~EtTc~~~~~~~~~~EIIEIgaV~vd~~~~~i~d~F~~~VkP~~~~~ls~~~~~lTGIT~e~V~~Ap~f~evl~ 158 (299) T 1zbh_A 79 YICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTGITQDQVDRADTFPQVLK 158 (299) T ss_dssp EEEEECCEECCCTTCCTTCCCCEEEEEEEEEETTTCCEEEEEEEEBCCSSSCSCCHHHHHHHCCCHHHHHTSBCHHHHHH T ss_pred EEEEEEEECCCCCCCCCCCCCEEEEEEEEEEECCCCEEEEEEEEEECCCCCCCCCHHHHHHCCCCHHHHHCCCCHHHHHH T ss_conf 89999985368899988899748999889998568759658999999898986798898851948999746787999999 Q ss_pred HHHHHHHCCCCEEEEE-------CCCCCCC-EEEECHHCCCCCCCC-CCHHCCCHHCCCCCCCC--CCCCHHHHHHHHCC Q ss_conf 4777530023202310-------2322431-121000001122221-00001100000001776--42223789997187 Q gi|254780818|r 82 EFWDFFNEQNAEWIAH-------NAKFDVG-FINAELQRINKDPLD-PSRIIDTLSIARRKHPS--SRNDLNSLCKRYGI 150 (245) Q Consensus 82 ~f~~fi~~~~~~lVaH-------Na~FD~~-fL~~el~r~~~~~~~-~~~~iDTl~lar~~~p~--~~~~L~~l~~~~~i 150 (245) +|.+|++. ..+++| ++.||.. ||..++.+.+...+. ...++|+..+.+..++. .+.+|+++|++||| T Consensus 159 ~f~~~l~~--~~~~~~~~~~~~~~g~~D~~~fL~~~~~~~~i~~p~~~~~~iDl~~~~~~~~~~~~~~~~L~~l~~~~gi 236 (299) T 1zbh_A 159 KVIDLMKL--KELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGM 236 (299) T ss_dssp HHHHHHHH--TTBTTTBCEEEEESSSHHHHTHHHHHHHHTTBCCCGGGSEEEEHHHHHHHHHTCCGGGCSHHHHHHHTTC T ss_pred HHHHHHCC--CCCCCCCCEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEHHHHHHHHHCCCCCCCCHHHHHHHCCC T ss_conf 99999705--8402466257750507669999999999708998743574776999999984687568799999998699 Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCC Q ss_conf 545556664026999999999999730576666 Q gi|254780818|r 151 TISHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 (245) Q Consensus 151 ~~~~r~~H~Al~Da~~~a~v~~~ll~g~~q~~l 183 (245) +...+ +|+|+.||+.||+||++|+..|.+..+ T Consensus 237 ~~~G~-~H~AldDA~~tA~Il~klL~~g~~~~i 268 (299) T 1zbh_A 237 DYDGR-PNCGLDDSKNIARIAVRMLQDGCELRI 268 (299) T ss_dssp CCCSC-TTCHHHHHHHHHHHHHHHHHTTCCCCC T ss_pred CCCCC-CCCHHHHHHHHHHHHHHHHHCCCCCCC T ss_conf 98998-728399999999999999976986662 No 9 >1wlj_A Interferon stimulated gene 20KDA; exoribonuclease, hydrolase; HET: U5P; 1.90A {Homo sapiens} SCOP: c.55.3.5 Probab=100.00 E-value=4.7e-34 Score=231.42 Aligned_cols=158 Identities=15% Similarity=0.211 Sum_probs=133.2 Q ss_pred CEEEEECCCCCCCCCCCEEEEEEEEEEECCEECCCEEEEEECCCCCCCCHHHEEECCCCCCCCCCCCCCCHHHHHHHHHH Q ss_conf 58999846788888888899999999999988031379898588822886572420210123224852100234477753 Q gi|254780818|r 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFF 87 (245) Q Consensus 8 r~iv~D~ETTGl~~~~d~Iieigav~i~~~~~~~~~f~~~i~P~~~~i~~~~~~ihGIt~~~l~~~p~f~ev~~~f~~fi 87 (245) ++|+||+|||||+|..|++|+++||...++.. .|++|++|. .+|++.+.++||||+++++++|+|.+++..|.+|+ T Consensus 6 ~~V~iD~ETtGl~~~~~~~i~~~aiv~~~g~~---v~~~~v~p~-~~i~~~~~~i~GIt~e~l~~~~~~~~v~~~~~~~~ 81 (189) T 1wlj_A 6 EVVAMDCEMVGLGPHRESGLARCSLVNVHGAV---LYDKFIRPE-GEITDYRTRVSGVTPQHMVGATPFAVARLEILQLL 81 (189) T ss_dssp CEEEEEEEEEEETTTTEEEEEEEEEECTTCCE---EEEEEEECS-SCEEECCHHHHCCCHHHHTTCEEHHHHHHHHHHHH T ss_pred CEEEEEEECCCCCCCCCCEEEEEEEEEECCCE---EEEEEECCC-CCCCHHHCCCCCCCHHHHHCCCCHHHHHHHHHHHH T ss_conf 89999768088899998679999999837959---999986699-98983002488999789622784788899998763 Q ss_pred HCCCCEEEEECCCCCCCEEEECHHCCCCCCCCCCHHCCCHHCCCCCCCC-CCCCHHHHHHHH-CCCC-CCCCCCCCHHHH Q ss_conf 0023202310232243112100000112222100001100000001776-422237899971-8754-555666402699 Q gi|254780818|r 88 NEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPS-SRNDLNSLCKRY-GITI-SHRSKHGALLDS 164 (245) Q Consensus 88 ~~~~~~lVaHNa~FD~~fL~~el~r~~~~~~~~~~~iDTl~lar~~~p~-~~~~L~~l~~~~-~i~~-~~r~~H~Al~Da 164 (245) + +.++||||+.||++||+.++.+.+. ...++||+.+++..+|. .+.+|+.||+.| |++. .+.++|+|++|| T Consensus 82 ~--~~~lV~hn~~fD~~~L~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~~i~~~~~~H~Al~DA 155 (189) T 1wlj_A 82 K--GKLVVGHDLKHDFQALKEDMSGYTI----YDTSTDRLLWREAKLDHCRRVSLRVLSERLLHKSIQNSLLGHSSVEDA 155 (189) T ss_dssp T--TSEEEESSHHHHHHHTTCCCTTCEE----EEGGGCHHHHHHHTC-----CCHHHHHHHHTCCCCSCCTTCCCHHHHH T ss_pred C--CCEEEEECHHHHHHHHHHHCHHCCC----CCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHH T ss_conf 1--3458973568789999986703266----584121699999873667788999999998098778999888819999 Q ss_pred HHHHHHHHHHH Q ss_conf 99999999997 Q gi|254780818|r 165 HLLSDVYIKMM 175 (245) Q Consensus 165 ~~~a~v~~~ll 175 (245) ++|++||..+. T Consensus 156 ~at~~l~~~~~ 166 (189) T 1wlj_A 156 RATMELYQISQ 166 (189) T ss_dssp HHHHHHHHHHH T ss_pred HHHHHHHHHHH T ss_conf 99999999999 No 10 >1zbu_A ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; HET: AMP; 3.00A {Homo sapiens} Probab=99.98 E-value=1.1e-33 Score=228.99 Aligned_cols=173 Identities=21% Similarity=0.283 Sum_probs=138.2 Q ss_pred EEEEECCCC---CCCC-CCCEEEEEEEEEEECC-EECCCEEEEEECCCC-CCCCHHHEEECCCCCCCCCCCCCCCHHHHH Q ss_conf 899984678---8888-8888999999999999-880313798985888-228865724202101232248521002344 Q gi|254780818|r 9 KIVFDIETT---GLDS-KNDRIIEIGAVELLDY-SKTNRTFQVFLCPNG-RKNSPEALKLHGITDEFLKDKPSFSSIFSE 82 (245) Q Consensus 9 ~iv~D~ETT---Gl~~-~~d~Iieigav~i~~~-~~~~~~f~~~i~P~~-~~i~~~~~~ihGIt~~~l~~~p~f~ev~~~ 82 (245) +||||+||| |.++ ..++|||||||.|+.. ..+.++|++||+|.. ..++++++++||||.+||.+||+|.+|+++ T Consensus 130 ~vViD~EtTc~~g~~~~~~~EIIEIgaV~vd~~~~~i~d~F~syVkP~~~~~ls~~~~eLTGITqe~Vd~Ap~f~eVl~~ 209 (349) T 1zbu_A 130 ICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTGITQDQVDRADTFPQVLKK 209 (349) T ss_dssp EEECCCEECCCTTCCTTCCCCEEECCEEEEETTTTEEEEEECCBEECSSSCSCCHHHHHHHCCCHHHHHTSEEHHHHHHH T ss_pred EEEEEEECCCCCCCCCCCCCEEEEEEEEEEECCCCEEEEEEEEEECCCCCCCCCHHHHHHHCCCHHHHHCCCCHHHHHHH T ss_conf 99999843688999989997279998899986899496678868898889878988997729699998559879999999 Q ss_pred HHHHHHCCCCEEEEEC-------CCCCC-CEEEECHHCCCCCCCC-CCHHCCCHHCCCCCCC--CCCCCHHHHHHHHCCC Q ss_conf 7775300232023102-------32243-1121000001122221-0000110000000177--6422237899971875 Q gi|254780818|r 83 FWDFFNEQNAEWIAHN-------AKFDV-GFINAELQRINKDPLD-PSRIIDTLSIARRKHP--SSRNDLNSLCKRYGIT 151 (245) Q Consensus 83 f~~fi~~~~~~lVaHN-------a~FD~-~fL~~el~r~~~~~~~-~~~~iDTl~lar~~~p--~~~~~L~~l~~~~~i~ 151 (245) |.+|++ +..+|+|| ..||+ .||..++.+.++.... ...++|+..+++..+. ..+.+|+++|++|||+ T Consensus 210 f~~~l~--~~~lv~~~~~~fv~~g~~Dl~~fL~~~~~~~~i~~p~~~~~~iDl~~~~~~~~~~~~~~~~L~~l~e~lgI~ 287 (349) T 1zbu_A 210 VIDLMK--LKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMD 287 (349) T ss_dssp HHHHHH--HTTBTTTBCEEEEESSSHHHHTHHHHHHHHTTBCCCGGGSEEEEHHHHHHHHHTCCGGGGSHHHHHHHTTCC T ss_pred HHHHHH--HCCCCCCCCEEEEECCHHHHHHHHHHHHHHHCCCCCCCCCCEEEHHHHHHHHHCCCCCCCCHHHHHHHCCCC T ss_conf 999985--243455660688705388899999999999589986325766659999999856887898999999976999 Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC Q ss_conf 455566640269999999999997305766665 Q gi|254780818|r 152 ISHRSKHGALLDSHLLSDVYIKMMVGGSQINFG 184 (245) Q Consensus 152 ~~~r~~H~Al~Da~~~a~v~~~ll~g~~q~~l~ 184 (245) ...+ +|+||.||++||+||++|+..|.+..++ T Consensus 288 ~eG~-~H~ALdDA~~tA~Il~~LL~~g~~l~i~ 319 (349) T 1zbu_A 288 YDGR-PHCGLDDSKNIARIAVRMLQDGCELRIN 319 (349) T ss_dssp CCSC-TTCHHHHHHHHHHHHHHHHHTTCCCCCC T ss_pred CCCC-CCCHHHHHHHHHHHHHHHHHCCCCCCCC T ss_conf 9998-8096999999999999999778867744 No 11 >2qxf_A Exodeoxyribonuclease I; alpha-beta domain, DNAQ superfamily, SH3-like domain, product bound structure, DNA damage, DNA repair, exonuclease; HET: TMP; 1.50A {Escherichia coli K12} SCOP: c.55.3.5 PDB: 1fxx_A* 3c94_A 3c95_A 3hl8_A* 3hp9_A* Probab=99.97 E-value=9.5e-33 Score=223.24 Aligned_cols=173 Identities=21% Similarity=0.234 Sum_probs=134.3 Q ss_pred CCCCC--CCCEEEEECCCCCCCCCCCEEEEEEEEEEEC-CEECCCEEEE-EECCC-CCCCCHHHEEECCCCCCCCCCCC- Q ss_conf 98667--7758999846788888888899999999999-9880313798-98588-82288657242021012322485- Q gi|254780818|r 1 MIRKN--KMRKIVFDIETTGLDSKNDRIIEIGAVELLD-YSKTNRTFQV-FLCPN-GRKNSPEALKLHGITDEFLKDKP- 74 (245) Q Consensus 1 ~~~~~--~mr~iv~D~ETTGl~~~~d~Iieigav~i~~-~~~~~~~f~~-~i~P~-~~~i~~~~~~ihGIt~~~l~~~p- 74 (245) |.+.+ +..+|++|+||||++|..|+|||+|||.+.. +.++ ++++. +++|. +...+|.|..|||||++++.++| T Consensus 1 ~~~~~~~~~~~v~~D~ETTGl~~~~d~iiq~~ai~~d~~~~~~-~~~~~~~~~~~~~~~p~~~a~~v~gi~~~~~~~~~~ 79 (482) T 2qxf_A 1 MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVI-GEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGE 79 (482) T ss_dssp ------CCCEEEEEEEEESSSCTTTSCEEEEEEEEECTTSCBC-SCCEEEEBCCCTTCCCCHHHHHHHCCCHHHHHHHCB T ss_pred CCCCCCCCCCEEEEEEECCCCCCCCCCEEEEEEEEECCCCCEE-EEEEEEEECCCCCCCCCHHHHHHHCCCHHHHHCCCC T ss_conf 9877786897899998878979999822899999998998585-145677634799999887896884949999973999 Q ss_pred CCCHHHHHHHHHHHCCCCEEEEEC-CCCCCCEEEECHHCCCCCCC-----CCCHHCCCHHCCCCC---------CC---- Q ss_conf 210023447775300232023102-32243112100000112222-----100001100000001---------77---- Q gi|254780818|r 75 SFSSIFSEFWDFFNEQNAEWIAHN-AKFDVGFINAELQRINKDPL-----DPSRIIDTLSIARRK---------HP---- 135 (245) Q Consensus 75 ~f~ev~~~f~~fi~~~~~~lVaHN-a~FD~~fL~~el~r~~~~~~-----~~~~~iDTl~lar~~---------~p---- 135 (245) ++.+++.++.+|+...++++|||| +.||..||+.+|.|.+.++. ..+...|++.+++.. +| T Consensus 80 ~~~e~~~~i~~~~~~~~~~~vg~N~~~FD~~~l~~~~~r~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~ 159 (482) T 2qxf_A 80 NEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDD 159 (482) T ss_dssp CHHHHHHHHHHHHTSTTEEEEESSTTTTHHHHHHHHHHHTTSCSSGGGTGGGCEEEEHHHHHHHHHHHCCTTSCCCBCTT T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCC T ss_conf 99999999999984489769996763347999999988744785012202687502568888888640442212432346 Q ss_pred C-CCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 6-4222378999718754555666402699999999999973 Q gi|254780818|r 136 S-SRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 (245) Q Consensus 136 ~-~~~~L~~l~~~~~i~~~~r~~H~Al~Da~~~a~v~~~ll~ 176 (245) | .+.+|+++|.++|++.. ++|+|++||.+|++|+..+.. T Consensus 160 ~~~~~kL~~l~~~~~i~~~--~aHdA~~D~~~t~~l~~~l~~ 199 (482) T 2qxf_A 160 GLPSFRLEHLTKANGIEHS--NAHDAMADVYATIAMAKLVKT 199 (482) T ss_dssp SSBCCCHHHHHHHTTCCCC-----CTTHHHHHHHHHHHHHHH T ss_pred CCCCCCHHHHHHHCCCCCC--CCCCHHHHHHHHHHHHHHHHH T ss_conf 8664669999998199877--886635517999999999987 No 12 >2f96_A Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolase, SAD, PSI, MCSG, protein structure initiative; 2.09A {Pseudomonas aeruginosa PAO1} SCOP: c.55.3.5 Probab=99.97 E-value=6.5e-32 Score=218.01 Aligned_cols=173 Identities=23% Similarity=0.393 Sum_probs=135.9 Q ss_pred EEEECCCCCCCCCCCEEEEEEEEEEE-C---CEECCCEEEEEECC-CCCCCCHHHEEECCCCCCCCC-----CCCCCCHH Q ss_conf 99984678888888889999999999-9---98803137989858-882288657242021012322-----48521002 Q gi|254780818|r 10 IVFDIETTGLDSKNDRIIEIGAVELL-D---YSKTNRTFQVFLCP-NGRKNSPEALKLHGITDEFLK-----DKPSFSSI 79 (245) Q Consensus 10 iv~D~ETTGl~~~~d~Iieigav~i~-~---~~~~~~~f~~~i~P-~~~~i~~~~~~ihGIt~~~l~-----~~p~f~ev 79 (245) ||||+|||||||..|+|||||||.+. + ....+.+++.++.| ...+++++++.+|||+++++. ..+.|.+. T Consensus 32 Vv~D~ETTGl~~~~d~IIeIgAV~v~~d~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 111 (224) T 2f96_A 32 VVVDVETGGFNSATDALLEIAATTVGMDEKGFLFPEHTYFFRIEPFEGANIEPAALEFTGIKLDHPLRMAVQEEAALTEI 111 (224) T ss_dssp EEEEEEESSSCTTTBCEEEEEEEEEEECTTSCEEEEEEEEEEBCCCTTCBCCHHHHHHHTCCTTCTTCCCBCHHHHHHHH T ss_pred EEEEEECCCCCCCCCCEEEEEEEEEEECCCCCEECCEEEEEEECCCCCCCCCCCEEEECCCCHHHHHHHCCCHHHHHHHH T ss_conf 79998689989878846899999998524782610124668736866778985036512101256554032103779999 Q ss_pred HHHHHHHHHC---CCCEEEEECCCCCCCEEEECHHCCCCCCCCCCHHCCCHHCCCCCCCC-CCCCHHHHHHHHCCCCCCC Q ss_conf 3447775300---23202310232243112100000112222100001100000001776-4222378999718754555 Q gi|254780818|r 80 FSEFWDFFNE---QNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPS-SRNDLNSLCKRYGITISHR 155 (245) Q Consensus 80 ~~~f~~fi~~---~~~~lVaHNa~FD~~fL~~el~r~~~~~~~~~~~iDTl~lar~~~p~-~~~~L~~l~~~~~i~~~~r 155 (245) +..+.+|+.. ....+|+||+.||..||++.+.+++..+.. ...+|++...+..++. ...+|+.+|++|||+.+++ T Consensus 112 ~~~~~~~~~~~~~~~~~~v~~n~~fd~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~l~~~~gi~~~~~ 190 (224) T 2f96_A 112 FRGIRKALKANGCKRAILVGHNSSFDLGFLNAAVARTGIKRNP-FHPFSSFDTATLAGLAYGQTVLAKACQAAGMEFDNR 190 (224) T ss_dssp HHHHHHHHHHTTCSEEEEEETTHHHHHHHHHHHHHHHTCCCCC-EEEEEEEEHHHHHHHHHSCCSHHHHHHHTTCCCCTT T ss_pred HHHHHHHHHHHCCCCCEECCCCHHHHHHHHHHHHHHHCCCCCC-CCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCC T ss_conf 9999988764045543221534788999999999981999886-411358999999875479643999999829999989 Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCCC Q ss_conf 6664026999999999999730576666 Q gi|254780818|r 156 SKHGALLDSHLLSDVYIKMMVGGSQINF 183 (245) Q Consensus 156 ~~H~Al~Da~~~a~v~~~ll~g~~q~~l 183 (245) ++|+||+||++||+||++|+..+++.+- T Consensus 191 ~aH~Al~Da~~ta~l~~kl~~~~~~~~~ 218 (224) T 2f96_A 191 EAHSARYDTEKTAELFCGIVNRWKEMGG 218 (224) T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHTTS T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 7678899999999999999999998189 No 13 >1w0h_A 3'-5' exonuclease ERI1; nuclease domain, hydrolase; HET: AMP; 1.59A {Homo sapiens} SCOP: c.55.3.5 Probab=99.96 E-value=2.5e-30 Score=208.08 Aligned_cols=175 Identities=19% Similarity=0.256 Sum_probs=138.2 Q ss_pred CEEEEECCCC----CCCCCCCEEEEEEEEEEEC-CEECCCEEEEEECCC-CCCCCHHHEEECCCCCCCCCCCCCCCHHHH Q ss_conf 5899984678----8888888899999999999-988031379898588-822886572420210123224852100234 Q gi|254780818|r 8 RKIVFDIETT----GLDSKNDRIIEIGAVELLD-YSKTNRTFQVFLCPN-GRKNSPEALKLHGITDEFLKDKPSFSSIFS 81 (245) Q Consensus 8 r~iv~D~ETT----Gl~~~~d~Iieigav~i~~-~~~~~~~f~~~i~P~-~~~i~~~~~~ihGIt~~~l~~~p~f~ev~~ 81 (245) ++||+|+||| |.++..++|||||||.+.+ ...++++|+.+|+|+ ..++++.+.++||||++++.++|++.++++ T Consensus 11 ~~vviD~ETT~~~~~~~~~~~~Iieigav~~d~~~~~~~~~f~~~i~p~~~~~i~~~~~~i~git~e~~~~~~~~~ev~~ 90 (204) T 1w0h_A 11 YICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTGITQDQVDRADTFPQVLK 90 (204) T ss_dssp EEEECCCEECCCTTCCTTSCCCEEEEEEEEEETTTCSEEEEEEEEBCCSSSCSCCHHHHHHHCCCHHHHHTSBCHHHHHH T ss_pred EEEEEEECCCCCCCCCCCCCCEEEEEEEEEEECCCCEEEEEEEEEECCCCCCCCCHHHHHHCCCCHHHHHCCCCHHHHHH T ss_conf 28999960788889999999808999999998899779899999970677986898999872998789850885899999 Q ss_pred HHHHHHHCC-----CCEEEEECCCCC-CCEEEECHHCCCCCCC-CCCHHCCCHHCCCCCCC--CCCCCHHHHHHHHCCCC Q ss_conf 477753002-----320231023224-3112100000112222-10000110000000177--64222378999718754 Q gi|254780818|r 82 EFWDFFNEQ-----NAEWIAHNAKFD-VGFINAELQRINKDPL-DPSRIIDTLSIARRKHP--SSRNDLNSLCKRYGITI 152 (245) Q Consensus 82 ~f~~fi~~~-----~~~lVaHNa~FD-~~fL~~el~r~~~~~~-~~~~~iDTl~lar~~~p--~~~~~L~~l~~~~~i~~ 152 (245) +|.+|+... +..++++|+.|| ..||+..+.+.+.+++ ....++|+....+..++ ..+.+|+++|++|||+. T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~kL~~l~~~~gi~~ 170 (204) T 1w0h_A 91 KVIDWMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDY 170 (204) T ss_dssp HHHHHHHHTTBTTTBCEEEEESSTTTTHHHHHHHHHHHTCCCCGGGSEEEEHHHHHHHHHTCCGGGCSHHHHHHHTTCCC T ss_pred HHHHHHHCCCEEECCHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEHHHHHHHHHCCCCCCCCHHHHHHHCCCCC T ss_conf 99987522412223223221103564899999999981899864245167688888887503457889999999869999 Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCC Q ss_conf 5556664026999999999999730576666 Q gi|254780818|r 153 SHRSKHGALLDSHLLSDVYIKMMVGGSQINF 183 (245) Q Consensus 153 ~~r~~H~Al~Da~~~a~v~~~ll~g~~q~~l 183 (245) .. ++|+||+||.+||+||.+|+..+.+..+ T Consensus 171 ~~-~aH~Al~Da~~ta~i~~~ll~~~~~~~i 200 (204) T 1w0h_A 171 DG-RPHCGLDDSKNIARIAVRMLQDGCELRI 200 (204) T ss_dssp CS-CTTCHHHHHHHHHHHHHHHHHTTCCCCC T ss_pred CC-CCCCHHHHHHHHHHHHHHHHHCCCCCCC T ss_conf 99-8848799999999999999987897788 No 14 >2gbz_A Oligoribonuclease; ORN, deddh, structural genomics, X-RAY diffraction, hydrolase; 2.30A {Xanthomonas campestris PV} Probab=99.84 E-value=5.8e-22 Score=155.83 Aligned_cols=152 Identities=20% Similarity=0.212 Sum_probs=102.2 Q ss_pred CEEEEECCCCCCCCCCCEEEEEEEEEEECC-EECCCEEEEEECCCCC-------CCCHHHEEECCCCCCCCCCCCCCCHH Q ss_conf 589998467888888888999999999999-8803137989858882-------28865724202101232248521002 Q gi|254780818|r 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDY-SKTNRTFQVFLCPNGR-------KNSPEALKLHGITDEFLKDKPSFSSI 79 (245) Q Consensus 8 r~iv~D~ETTGl~~~~d~Iieigav~i~~~-~~~~~~f~~~i~P~~~-------~i~~~~~~ihGIt~~~l~~~p~f~ev 79 (245) ++|++|+|||||||..|+|||||||++... ....+. ..++.|... .++......+++...+....+.+.+. T Consensus 10 ~lV~lD~ETTGLdp~~d~IIEIaaV~~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (194) T 2gbz_A 10 RLIWIDLEMTGLDTDRDSIIEIATIVTDAQLNVLAEG-PELAIAHSLETLEAMDEWNRNQHRRSGLWQRVLDSQVTHAQA 88 (194) T ss_dssp EEEEEEEEESCSCTTTCCEEEEEEEEEETTCCEEEEC-CCEECCCCHHHHHTSCSHHHHHHHHHTHHHHHHHCCCCHHHH T ss_pred CEEEEEEECCCCCCCCCEEEEEEEEEECCCCEEECCC-CEEEECCCHHHCCCCCCCCCEEEECCCHHHHHHCCCCCHHHH T ss_conf 9899987789999999837999999982896050125-432014751102433345411331231134301356579999 Q ss_pred HHHHHHHHH----CCCCEEEEECCCCCCCEEEECHHCCCCCCCCCCHHCCCHHCCCC---CCCCCCCCHHHHHHHHCCCC Q ss_conf 344777530----02320231023224311210000011222210000110000000---17764222378999718754 Q gi|254780818|r 80 FSEFWDFFN----EQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARR---KHPSSRNDLNSLCKRYGITI 152 (245) Q Consensus 80 ~~~f~~fi~----~~~~~lVaHNa~FD~~fL~~el~r~~~~~~~~~~~iDTl~lar~---~~p~~~~~L~~l~~~~~i~~ 152 (245) ...+..+.. ....++++||+.||..|++..+.+.+..+ ..+.+|++.+++. .+|. .+.|+.. T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~fD~~~l~~~~~~~~~~~--~~~~iD~~~~~~~~~~~~~~---------~~~~~~~ 157 (194) T 2gbz_A 89 EAQTVAFLGEWIRAGASPMCGNSICQDRRFLHRQMSRLERYF--HYRNLDVSTIKELARRWAPA---------VASGFAK 157 (194) T ss_dssp HHHHHHHHTTTCCTTSSCEEESSHHHHHHHHHHHCHHHHHHS--CSCEEEHHHHHHHHHHHCGG---------GGTTCCC T ss_pred HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHCHH---------HHHCCCC T ss_conf 999998766404689741113421330999999999861104--89731089999998875914---------3407999 Q ss_pred CCCCCCCCHHHHHHHHHHHHH Q ss_conf 555666402699999999999 Q gi|254780818|r 153 SHRSKHGALLDSHLLSDVYIK 173 (245) Q Consensus 153 ~~r~~H~Al~Da~~~a~v~~~ 173 (245) +++|+|++|+++|.+++.. T Consensus 158 --~~aHrAl~Dv~aTi~llk~ 176 (194) T 2gbz_A 158 --SSAHTALSDVRDSIDELRH 176 (194) T ss_dssp --CSCCSHHHHHHHHHHHHHH T ss_pred --CCCCCCHHHHHHHHHHHHH T ss_conf --8984878999999999999 No 15 >2igi_A Oligoribonuclease; RNAse, exoribonuclease, exonuclease, hydrolase, mRNA decay; 1.70A {Escherichia coli K12} SCOP: c.55.3.5 PDB: 1yta_A 1j9a_A Probab=99.81 E-value=3.7e-21 Score=150.81 Aligned_cols=157 Identities=15% Similarity=0.106 Sum_probs=95.5 Q ss_pred CEEEEECCCCCCCCCCCEEEEEEEEEEECCEECCCEEEEEECCCCCCCCH-------HHEEECCCCCCCCCCCCCCCHHH Q ss_conf 58999846788888888899999999999988031379898588822886-------57242021012322485210023 Q gi|254780818|r 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSP-------EALKLHGITDEFLKDKPSFSSIF 80 (245) Q Consensus 8 r~iv~D~ETTGl~~~~d~Iieigav~i~~~~~~~~~f~~~i~P~~~~i~~-------~~~~ihGIt~~~l~~~p~f~ev~ 80 (245) +.|++|+|||||||..|+|||||||.+.+.......+..+..+.....++ .....++..+......+...... T Consensus 6 ~lv~lD~ETTGL~p~~D~IIeIaaV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (180) T 2igi_A 6 NLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAEGPTIAVHQSDEQLALMDDWNVRTHTASGLVERVKASTMGDREAE 85 (180) T ss_dssp CEEEEEEEESSSCTTTCCEEEEEEEEECTTCCEEEEEEEEECCCCHHHHTTCCHHHHHHHHHTTHHHHHHHCCCCHHHHH T ss_pred CEEEEEEECCCCCCCCCEEEEEEEEEEECCCEEEEECCEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCHHHHH T ss_conf 78999867899999998479999999989953654133000122212466434667301025533010234542399999 Q ss_pred HHHHHHHH----CCCCEEEEECCCCCCCEEEECHHCCCCCCCCCCHHCCCHHCCCCCCCCCCCCHHHHHHHHCCCCCCCC Q ss_conf 44777530----02320231023224311210000011222210000110000000177642223789997187545556 Q gi|254780818|r 81 SEFWDFFN----EQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRS 156 (245) Q Consensus 81 ~~f~~fi~----~~~~~lVaHNa~FD~~fL~~el~r~~~~~~~~~~~iDTl~lar~~~p~~~~~L~~l~~~~~i~~~~r~ 156 (245) ..+..++. .....+++||+.||..|+++.+.+.... + ..+.+|+..+.+... +...+.++|++. .+ T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~fD~~~l~~~~~~~~~~-~-~~~~lD~~~~~~~~~------~~~~~~~~~~~~--~~ 155 (180) T 2igi_A 86 LATLEFLKQWVPAGKSPICGNSIGQDRRFLFKYMPELEAY-F-HYRYLDVSTLKELAR------RWKPEILDGFTK--QG 155 (180) T ss_dssp HHHHHHHTTTSCTTTSCEEESSHHHHHHHHHHHCHHHHHH-S-CSCEEETHHHHHHHH------HHCGGGGGGSCC--CC T ss_pred HHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHCCC-C-CCCEECHHHHHHHHH------HHCHHHHCCCCC--CC T ss_conf 9899988751257872564575401699999889973001-5-885132677999998------649787729999--99 Q ss_pred CCCCHHHHHHHHHHHHHH Q ss_conf 664026999999999999 Q gi|254780818|r 157 KHGALLDSHLLSDVYIKM 174 (245) Q Consensus 157 ~H~Al~Da~~~a~v~~~l 174 (245) +|+||+|+++|.+++..+ T Consensus 156 aHrAl~Dv~~ti~~l~~~ 173 (180) T 2igi_A 156 THQAMDDIRESVAELAYY 173 (180) T ss_dssp CCCHHHHHHHHHHHHHHH T ss_pred CCCCHHHHHHHHHHHHHH T ss_conf 718589999999999999 No 16 >1x9m_A DNA polymerase; DNA ploymerase, N-2-acetylaminofluorene, replication block, mutagenesis, transferase/electron transport/DNA complex; HET: DNA 2DT 8FG; 2.10A {Enterobacteria phage T7} SCOP: c.55.3.5 e.8.1.1 PDB: 1skr_A* 1skw_A* 1sl0_A* 1sks_A* 1sl2_A* 1t7p_A* 1t8e_A* 1tk0_A* 1tk5_A* 1tk8_A* 1tkd_A* 1sl1_A* 1x9s_A* 1x9w_A* 1zyq_A* 2ajq_A* Probab=99.38 E-value=2.9e-13 Score=101.52 Aligned_cols=138 Identities=21% Similarity=0.239 Sum_probs=86.4 Q ss_pred EEEECCCCCCCCCCCEEEEEEEEEEECCEECCCEEEEEECCCCCCCCHHHEEECCCCCCCCCCCCCCCHHHHHHHHHHHC Q ss_conf 99984678888888889999999999998803137989858882288657242021012322485210023447775300 Q gi|254780818|r 10 IVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNE 89 (245) Q Consensus 10 iv~D~ETTGl~~~~d~Iieigav~i~~~~~~~~~f~~~i~P~~~~i~~~~~~ihGIt~~~l~~~p~f~ev~~~f~~fi~~ 89 (245) ||||+|||||++..+.|.-|++ .+. .+++ +..| +|.. +.+.++.+..++. T Consensus 2 ~v~DiET~gL~~~~~~i~~i~~---~d~-~~~~-~~~~-~~~~-----------------------~~~~~~~l~~~l~- 51 (698) T 1x9m_A 2 IVSDIEANALLESVTKFHCGVI---YDY-STAE-YVSY-RPSD-----------------------FGAYLDALEAEVA- 51 (698) T ss_dssp EEEEEEESSCGGGCCCEEEEEE---EET-TTTE-EEEE-CGGG-----------------------HHHHHHHHHHHHH- T ss_pred EEEECCCCCCCCCCCEEEEEEE---EEC-CCCE-EEEE-CCCC-----------------------HHHHHHHHHHHHH- T ss_conf 8999168997756787999999---978-9972-8984-7654-----------------------0579999999985- Q ss_pred CCCEEEEECC-CCCCCEEEECHHC-CCC-CCCCCCHHCCCHHCCCCCCCC-------------CCCCHHHHHHHHCCCCC Q ss_conf 2320231023-2243112100000-112-222100001100000001776-------------42223789997187545 Q gi|254780818|r 90 QNAEWIAHNA-KFDVGFINAELQR-INK-DPLDPSRIIDTLSIARRKHPS-------------SRNDLNSLCKRYGITIS 153 (245) Q Consensus 90 ~~~~lVaHNa-~FD~~fL~~el~r-~~~-~~~~~~~~iDTl~lar~~~p~-------------~~~~L~~l~~~~~i~~~ 153 (245) +...+|+||+ .||+.+|++-+.. .+. -..+...++|||.++|...|. .++||++++.++|.... T Consensus 52 ~~~~lVgHN~~~FD~~~L~k~~g~~~~~~~~~~~~~v~DTmi~s~ll~p~~~~~~~~~~~~~~~~hsL~a~g~rlg~~K~ 131 (698) T 1x9m_A 52 RGGLIVFHNGHKYDVPALTKLAKLQLNREFHLPRENCIDTLVLSRLIHSNLKDTDMGLLRSGKLPGALEAWGYRLGEMKG 131 (698) T ss_dssp TTCCEEESSTTTTHHHHHHHHHHHHHCCCCCCCGGGEEEHHHHHHHHTTTSCCCTTTTSCGGGSCSCCCHHHHHHHHHHH T ss_pred CCCEEEECCCHHCCHHHHHHHHCCCCCCCCCCCCCCEEEHHHHHHHHCCCCCCCCCHHHHCCCCCCCHHHHHHHHCCCCC T ss_conf 59969975723208999988738742334566778750277887663998644431122026678788999998586543 Q ss_pred ---------------------------CCCCCCCHHHHHHHHHHHHHHHHC Q ss_conf ---------------------------556664026999999999999730 Q gi|254780818|r 154 ---------------------------HRSKHGALLDSHLLSDVYIKMMVG 177 (245) Q Consensus 154 ---------------------------~r~~H~Al~Da~~~a~v~~~ll~g 177 (245) ..-.+-|..|+.+|..+|..|... T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~em~~Ya~~Dv~iT~~L~~~l~~~ 182 (698) T 1x9m_A 132 EYKDDFKRMLEEQGEEYVDGMEWWNFNEEMMDYNVQDVVVTKALLEKLLSD 182 (698) T ss_dssp HHHHHHHHHHHHTTCCCCTTGGGTSCCHHHHHHHHHHHHHHHHHHHHHHTC T ss_pred CHHHHHHHHHHHCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 137776432221022334413343348999999998999999999999998 No 17 >2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA), exonuclease, transferase, transferase/DNA complex; HET: US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1 PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A* 2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A* Probab=99.19 E-value=4e-11 Score=88.14 Aligned_cols=117 Identities=19% Similarity=0.288 Sum_probs=76.2 Q ss_pred CCEEEEECCCCCCCCCCCEEEEEEEEEEECCEECCCEEEEEECCCCCCCCHHHEEECCCCCCCCCCCCCCCHHHHHHHHH Q ss_conf 75899984678888888889999999999998803137989858882288657242021012322485210023447775 Q gi|254780818|r 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDF 86 (245) Q Consensus 7 mr~iv~D~ETTGl~~~~d~Iieigav~i~~~~~~~~~f~~~i~P~~~~i~~~~~~ihGIt~~~l~~~p~f~ev~~~f~~f 86 (245) ...++||||||||||..++|+-|+. ...+ +..| || | +. |.... ..+.-.-.++++.+.++ T Consensus 26 ~~~~a~D~ETt~ld~~~~~ivgis~-s~~~----~~~~--yi-p----i~------h~~~~--~~~~~~~~~vl~~Lk~~ 85 (605) T 2kfn_A 26 APVFAFDTETDSLDNISANLVGLSF-AIEP----GVAA--YI-P----VA------HDYLD--APDQISRERALELLKPL 85 (605) T ss_dssp SSSEEEEEEESCSCTTTCCEEEEEE-EEET----TEEE--EE-E----CC------CCSTT--CCCCCCHHHHHHHHHHH T ss_pred CCEEEEEEECCCCCCCCCEEEEEEE-ECCC----CEEE--EE-E----EC------CCCCC--CCCCCCHHHHHHHHHHH T ss_conf 9949998317999836574999999-8249----8599--99-8----22------66677--75558999999999999 Q ss_pred HHCCCCEEEEECCCCCCCEEEECHHCCCCCCCCCCHHCCCHHCCCCCCCCCC-CCHHHHHHHHC Q ss_conf 3002320231023224311210000011222210000110000000177642-22378999718 Q gi|254780818|r 87 FNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSR-NDLNSLCKRYG 149 (245) Q Consensus 87 i~~~~~~lVaHNa~FD~~fL~~el~r~~~~~~~~~~~iDTl~lar~~~p~~~-~~L~~l~~~~~ 149 (245) +...+.+.|+||+.||+.||. ++|... .+.+.||+.+++...|+.+ ..++.++.++. T Consensus 86 l~~~~i~kV~HNakFD~~~L~----~~Gi~l--~~~~~DTmiaa~ll~~~~~~~~l~~~~~~~l 143 (605) T 2kfn_A 86 LEDEKALKVGQNLKYDRGILA----NYGIEL--RGIAFDTMLESYILNSVAGRHDMDSLAERWL 143 (605) T ss_dssp HTCTTSCEEESSHHHHHHHHH----TTTCCC--CCEEEEHHHHHHHHCTTSSCCSHHHHHHHHS T ss_pred HHCCCCCEEEECHHHHHHHHH----HCCCCC--CCCHHHHHHHHHHHCCCCCCCCHHHHHHHHC T ss_conf 818999799972699999999----779988--9840207778777256555565899999863 No 18 >2hhv_A DNA polymerase I; DNA replication, klenow fragment, protein- DNA complex, O6-methyl-guanine, transferase/DNA complex; HET: DNA 6OG SUC; 1.55A {Geobacillus stearothermophilus} SCOP: c.55.3.5 e.8.1.1 PDB: 2hhs_A* 2hht_A* 2hhu_A* 2hhq_A* 2hhx_A* 2hw3_A* 1nk4_A* 1l3t_A* 1l3u_A* 1l3v_A* 1l5u_A* 1njw_A* 1l3s_A* 1njy_A* 1njz_A* 1nk0_A* 1njx_A* 1nk5_A* 1nk6_A* 1nk7_A* ... Probab=98.96 E-value=9.6e-10 Score=79.50 Aligned_cols=131 Identities=15% Similarity=0.150 Sum_probs=88.8 Q ss_pred CEEEEECCCCCCCCCCCEEEEEEEEEEECCEECCCEEEEEECCCCCCCCHHHEEECCCCCCCCCCCCCCCHHHHHHHHHH Q ss_conf 58999846788888888899999999999988031379898588822886572420210123224852100234477753 Q gi|254780818|r 8 RKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFF 87 (245) Q Consensus 8 r~iv~D~ETTGl~~~~d~Iieigav~i~~~~~~~~~f~~~i~P~~~~i~~~~~~ihGIt~~~l~~~p~f~ev~~~f~~fi 87 (245) ..++|||||||+|+..++|+-|+.- ..+ +. + |+-|. .. . ..+.|..|+ T Consensus 18 ~~~a~~~e~~~~~~~~~~ivGis~~-~~~----~~-~--~y~p~------~~-----~-------------~~~~l~~~l 65 (580) T 2hhv_A 18 DKAALVVEVVEENYHDAPIVGIAVV-NEH----GR-F--FLRPE------TA-----L-------------ADPQFVAWL 65 (580) T ss_dssp SEEEEEEECCSSSCTTCCCCEEEEE-ETT----EE-E--EECHH------HH-----T-------------TCHHHHHHH T ss_pred CCCEEEEECCCCCCCCCEEEEEEEE-ECC----CE-E--EEECC------CC-----C-------------CHHHHHHHH T ss_conf 8847999769997350728999999-669----77-9--99453------54-----6-------------648999996 Q ss_pred HCCCCEEEEECCCCCCCEEEECHHCCCCCCCCCCHHCCCHHCCCCCCCCC-CCCHHHHHHHHCCCCC-C----------C Q ss_conf 00232023102322431121000001122221000011000000017764-2223789997187545-5----------5 Q gi|254780818|r 88 NEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSS-RNDLNSLCKRYGITIS-H----------R 155 (245) Q Consensus 88 ~~~~~~lVaHNa~FD~~fL~~el~r~~~~~~~~~~~iDTl~lar~~~p~~-~~~L~~l~~~~~i~~~-~----------r 155 (245) ...+...|+||+.||+.+| .++|... ...++||+..+..+.|+. +++|+.++.+|+.... . . T Consensus 66 ~d~~~~ki~hN~k~D~~~L----~~~Gi~l--~g~~~DTmiaa~ll~~~~~~~~L~~l~~~~~~~~~~~~~~~~gk~~~~ 139 (580) T 2hhv_A 66 GDETKKKSMFDSKRAAVAL----KWKGIEL--CGVSFDLLLAAYLLDPAQGVDDVAAAAKMKQYEAVRPDEAVYGKGAKR 139 (580) T ss_dssp HCTTSEEEESSHHHHHHHH----HTTTCCC--CCEEEEHHHHHHHHCGGGCCCSHHHHHHTTTCCSSCCHHHHHCSGGGC T ss_pred CCCCCCEEEEEHHHHHHHH----HHCCCCC--CCCEEHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCHHHHHCCCCCCC T ss_conf 6999865885279999999----9788827--997328999999759999988899999986799878488751877100 Q ss_pred -------CCCCCHHHHHHHHHHHHHHHH Q ss_conf -------666402699999999999973 Q gi|254780818|r 156 -------SKHGALLDSHLLSDVYIKMMV 176 (245) Q Consensus 156 -------~~H~Al~Da~~~a~v~~~ll~ 176 (245) -..-|..||.+|.++|..|.. T Consensus 140 ~~~~~~~~~~Ya~~Da~~t~~L~~~l~~ 167 (580) T 2hhv_A 140 AVPDEPVLAEHLVRKAAAIWELERPFLD 167 (580) T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 2632799999999999999999999999 No 19 >2d5r_A CCR4-NOT transcription complex subunit 7; poly(A) deadenylase, antiproliferative protein, transcription; 2.50A {Homo sapiens} SCOP: c.55.3.9 Probab=98.75 E-value=9.8e-09 Score=73.20 Aligned_cols=169 Identities=15% Similarity=0.186 Sum_probs=102.3 Q ss_pred CEEEEECCCCCCCCC-----CC----------------EEEEEEEEEEECC--EECC-CE--EEEEECCCCCCCCHHHEE Q ss_conf 589998467888888-----88----------------8999999999999--8803-13--798985888228865724 Q gi|254780818|r 8 RKIVFDIETTGLDSK-----ND----------------RIIEIGAVELLDY--SKTN-RT--FQVFLCPNGRKNSPEALK 61 (245) Q Consensus 8 r~iv~D~ETTGl~~~-----~d----------------~Iieigav~i~~~--~~~~-~~--f~~~i~P~~~~i~~~~~~ 61 (245) .+|.+|||-||+-.+ .+ .|||+|..-.... .... .+ |..+.+|......+++++ T Consensus 25 ~fvAiDtEfpGl~~~~~~~~~~~~~~~Y~~lr~nv~~~~iiQlGlt~~~~~g~~~~~~~~w~FNf~f~~~~d~~~~~Si~ 104 (252) T 2d5r_A 25 NYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTSTWQFNFKFNLTEDMYAQDSIE 104 (252) T ss_dssp CEEEEEEECCCCCCCCCSCCSSHHHHHHHHHHHHHTTCCCCEEEEEEECTTSCCCSSCCEEEEEBCCCTTTSCCCHHHHH T ss_pred CEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEEEEEEECCCCCCCCCCEEEEEEEECCCCCCCCHHHHH T ss_conf 98999867068457887655799899999999877540303789898624787788861277998777976653778999 Q ss_pred ---ECCCCCCCC-CCCCCCCHHHHHHHH--HHHCCCCEEEEECCCCCCCEEEECHHCCCCCC----------CCCCHHCC Q ss_conf ---202101232-248521002344777--53002320231023224311210000011222----------21000011 Q gi|254780818|r 62 ---LHGITDEFL-KDKPSFSSIFSEFWD--FFNEQNAEWIAHNAKFDVGFINAELQRINKDP----------LDPSRIID 125 (245) Q Consensus 62 ---ihGIt~~~l-~~~p~f~ev~~~f~~--fi~~~~~~lVaHNa~FD~~fL~~el~r~~~~~----------~~~~~~iD 125 (245) =||+.-..+ ..+-++.+-.+.+.. .+..++.++|+||..||+.||-..|.-..+|. .-...++| T Consensus 105 fL~~~GfDF~k~~~~GI~~~~f~ell~~s~~~~~~~v~wv~f~g~yD~~~L~k~l~g~~LP~~~~~F~~~~~~~Fp~~yD 184 (252) T 2d5r_A 105 LLTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFFPVIYD 184 (252) T ss_dssp HHHHHTCCHHHHHHHCBCHHHHHHHHHTTTSSSSSSCEEEESSCHHHHHHHHHHHHTSCCCSSHHHHHHHHHHHCSCEEE T ss_pred HHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCHHEE T ss_conf 99986997789998097389999988861143258973787134578999999980999997789999999997734604 Q ss_pred CHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCC Q ss_conf 00000001776422237899971875455566640269999999999997305 Q gi|254780818|r 126 TLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMVGG 178 (245) Q Consensus 126 Tl~lar~~~p~~~~~L~~l~~~~~i~~~~r~~H~Al~Da~~~a~v~~~ll~g~ 178 (245) |-.+++.. ++.+.+|..+++.++++--. .+|.|-+||.+|+.+|.+|.... T Consensus 185 ~K~i~~~~-~~~~~~L~~la~~L~v~r~g-~~H~AG~DSllT~~~F~~l~~~~ 235 (252) T 2d5r_A 185 VKYLMKSC-KNLKGGLQEVAEQLELERIG-PQHQAGSDSLLTGMAFFKMREMF 235 (252) T ss_dssp HHHHGGGC-TTCCSSHHHHHHHHTCCCCS-STTSHHHHHHHHHHHHHHHHHHT T ss_pred HHHHHHHC-CCCCCHHHHHHHHCCCCCCC-CCCCCHHHHHHHHHHHHHHHHHH T ss_conf 69898445-66576499999976999879-87653678999999999999997 No 20 >1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase, tRNA processing, hydrolase,translation; 1.60A {Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5 Probab=98.63 E-value=6e-08 Score=68.26 Aligned_cols=136 Identities=19% Similarity=0.234 Sum_probs=86.7 Q ss_pred CCEEEEECCCCCCCCCCCEEEEEEEEEEECCEECCCEEEEEECCCCCCCCHHHEEECCCCCCCCCCCCCCCHHHHHHHHH Q ss_conf 75899984678888888889999999999998803137989858882288657242021012322485210023447775 Q gi|254780818|r 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDF 86 (245) Q Consensus 7 mr~iv~D~ETTGl~~~~d~Iieigav~i~~~~~~~~~f~~~i~P~~~~i~~~~~~ihGIt~~~l~~~p~f~ev~~~f~~f 86 (245) .+.|.|||||+++++...++ +.|.+.. ++. ..+|.|. .++ + +..+.+. T Consensus 22 ~~~ia~DtE~~~~~ty~~~l---~LiQi~~----~~~-~~liD~l--~~~---------------~-------~~~L~~l 69 (375) T 1yt3_A 22 FPAIALDTEFVRTRTYYPQL---GLIQLFD----GEH-LALIDPL--GIT---------------D-------WSPLKAI 69 (375) T ss_dssp SSEEEEEEEEECCSCSSCEE---EEEEEEC----SSC-EEEECGG--GCS---------------C-------CHHHHHH T ss_pred CCEEEEECCCCCCCCCCCEE---EEEEEEE----CCE-EEEEECC--CCC---------------C-------HHHHHHH T ss_conf 99089979848988888878---9999876----892-7999658--987---------------7-------8999999 Q ss_pred HHCCCCEEEEECCCCCCCEEEECHHCCCCCCCCCCHHCCCHHCCCCCCCCCCCCHHHHHHH-HCCCCCC----------- Q ss_conf 3002320231023224311210000011222210000110000000177642223789997-1875455----------- Q gi|254780818|r 87 FNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKR-YGITISH----------- 154 (245) Q Consensus 87 i~~~~~~lVaHNa~FD~~fL~~el~r~~~~~~~~~~~iDTl~lar~~~p~~~~~L~~l~~~-~~i~~~~----------- 154 (245) +...+...|+||+.||+.+|.+.+ |.. +..++||+..++..-.+.+++|+.++.+ +|+++.. T Consensus 70 l~~~~i~kv~h~~~~D~~~L~~~~---~~~---~~~~fDt~ia~~~~~~~~~~~l~~l~~~~l~~~l~K~~~~sdW~~rP 143 (375) T 1yt3_A 70 LRDPSITKFLHAGSEDLEVFLNVF---GEL---PQPLIDTQILAAFCGRPMSWGFASMVEEYSGVTLDKSESRTDWLARP 143 (375) T ss_dssp HHCTTSEEEESSCHHHHHHHHHHH---SSC---CSSEEEHHHHHHHTTCCTTCCHHHHHHHHHCCCCCCTTTTSCTTSSS T ss_pred HHCCCCEEEEECHHHHHHHHHHHC---CCC---CCCEEECHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCC T ss_conf 819886199725586799999964---988---88716638889883875067888999998645033055452225666 Q ss_pred ---CCCCCCHHHHHHHHHHHHHHHHCCCC Q ss_conf ---56664026999999999999730576 Q gi|254780818|r 155 ---RSKHGALLDSHLLSDVYIKMMVGGSQ 180 (245) Q Consensus 155 ---r~~H~Al~Da~~~a~v~~~ll~g~~q 180 (245) .+.+-|..|+..|.++|..|.....+ T Consensus 144 Ls~~ql~YAa~Dv~~l~~l~~~l~~~L~~ 172 (375) T 1yt3_A 144 LTERQCEYAAADVWYLLPITAKLMVETEA 172 (375) T ss_dssp CCHHHHHHHHHHHHTHHHHHHHHHHHHHH T ss_pred CCHHHHHHHHCCCEEHHHHHHHHHHHHHH T ss_conf 87899999840732379999999987763 No 21 >3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, cytoplasm, exonuclease, hydrolase, magnesium, metal-binding, nonsense- mediated mRNA decay; HET: 7MG GDP; 3.00A {Mus musculus} Probab=98.62 E-value=7.8e-08 Score=67.56 Aligned_cols=88 Identities=20% Similarity=0.149 Sum_probs=57.4 Q ss_pred HCCCCEEEEECCCCCCCEEEECHHCCCCCC--------C--CCCHHCCCHHCCCCCC--C-CCCCCHHHHHHHHCCCC-- Q ss_conf 002320231023224311210000011222--------2--1000011000000017--7-64222378999718754-- Q gi|254780818|r 88 NEQNAEWIAHNAKFDVGFINAELQRINKDP--------L--DPSRIIDTLSIARRKH--P-SSRNDLNSLCKRYGITI-- 152 (245) Q Consensus 88 ~~~~~~lVaHNa~FD~~fL~~el~r~~~~~--------~--~~~~~iDTl~lar~~~--p-~~~~~L~~l~~~~~i~~-- 152 (245) .....++||||.-+|+-||-.-|-. .+|. + -...++||--|+.... + ...-+|..|+..++... T Consensus 273 ~~~kkpiVgHN~~~Dl~~l~~~F~g-pLP~~~~eFk~~v~~lFP~i~DTK~la~~~~~~~~~~~t~L~~l~~~l~~~~~~ 351 (507) T 3d45_A 273 ANSGKLVVGHNMLLDVMHTIHQFYC-PLPADLNEFKEMAICVFPRLLDTKLMASTQPFKDIINNTSLAELEKRLKETPFD 351 (507) T ss_dssp HHHCCEEEESSCHHHHHHHHHHHTC-SCCSSHHHHHHHHHHHCSCEEEHHHHTTSTTHHHHCCCCCHHHHHHHTTSTTCC T ss_pred HHCCCEEEEECCHHHHHHHHHHHCC-CCCCCHHHHHHHHHHHCCCCEEHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCC T ss_conf 7259839992438889999998428-899679999999999777505888776316744467787699999998325789 Q ss_pred ---------------CCCCCCCCHHHHHHHHHHHHHHHH Q ss_conf ---------------555666402699999999999973 Q gi|254780818|r 153 ---------------SHRSKHGALLDSHLLSDVYIKMMV 176 (245) Q Consensus 153 ---------------~~r~~H~Al~Da~~~a~v~~~ll~ 176 (245) ....+|.|-.||.+|+.||+.|.. T Consensus 352 ~~~i~~~~~~~~~~~~~~~~HeAGyDA~mTg~vF~~l~~ 390 (507) T 3d45_A 352 PPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMAN 390 (507) T ss_dssp CCCEEECTTSCCCC----CCCCHHHHHHHHHHHHHHHHH T ss_pred CCCEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH T ss_conf 983422656665556788873538889999999999999 No 22 >2a1r_A Poly(A)-specific ribonuclease PARN; DEDD, nuclease domain, hydrolase/RNA complex; 2.60A {Homo sapiens} PDB: 2a1s_A Probab=98.59 E-value=3.2e-07 Score=63.75 Aligned_cols=87 Identities=22% Similarity=0.156 Sum_probs=56.0 Q ss_pred CCCCEEEEECCCCCCCEEEECHHCCCCCC--------C--CCCHHCCCHHCCCCC--C-CCCCCCHHHHHHHHCCCC--- Q ss_conf 02320231023224311210000011222--------2--100001100000001--7-764222378999718754--- Q gi|254780818|r 89 EQNAEWIAHNAKFDVGFINAELQRINKDP--------L--DPSRIIDTLSIARRK--H-PSSRNDLNSLCKRYGITI--- 152 (245) Q Consensus 89 ~~~~~lVaHNa~FD~~fL~~el~r~~~~~--------~--~~~~~iDTl~lar~~--~-p~~~~~L~~l~~~~~i~~--- 152 (245) ..+.++||||.-+|+-|+-..|-. .+|. + ....++||--++... - ....-+|..+...++-.. T Consensus 279 ~~~kpiVgHN~~~Dl~~~~~~f~~-~LP~~~~eFk~~v~~~FP~i~DTK~l~~~~~~~~~~~~t~L~~l~~~l~~~~~~~ 357 (430) T 2a1r_A 279 NSGKLVIGHNMLLDVMHTVHQFYC-PLPADLSEFKEMTTCVFPRLLDTKLMASTQPFKDIINNTSLAELEKRLKETPFNP 357 (430) T ss_dssp HHCCEEEESSCHHHHHHHHHHHTC-CCCSSHHHHHHHHHHHCSSEEEHHHHHTSTTTTTTCSCCSHHHHHHHTTSTTCCC T ss_pred HCCCCEEECCHHHHHHHHHHHCCC-CCCCCHHHHHHHHHHHCCCEEEHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCC T ss_conf 659977866428889999987158-9997899999999987673004376531366446788866899999972067899 Q ss_pred --------------CCCCCCCCHHHHHHHHHHHHHHHH Q ss_conf --------------555666402699999999999973 Q gi|254780818|r 153 --------------SHRSKHGALLDSHLLSDVYIKMMV 176 (245) Q Consensus 153 --------------~~r~~H~Al~Da~~~a~v~~~ll~ 176 (245) ....+|.|-.||.+|+.||+.|.. T Consensus 358 p~i~~~~~~~~~~~~~~~~HeAGyDA~mTG~vF~~l~~ 395 (430) T 2a1r_A 358 PKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMAN 395 (430) T ss_dssp CCEEECTTCCCC-----CCCCHHHHHHHHHHHHHHHHH T ss_pred CCEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH T ss_conf 83433766665568899861708899999999999999 No 23 >2gv9_A DNA polymerase; polymerase alpha fold, transferase; HET: DNA; 2.68A {Human herpesvirus 1 strain kos} PDB: 1dml_B* Probab=98.52 E-value=7.8e-07 Score=61.32 Aligned_cols=167 Identities=21% Similarity=0.226 Sum_probs=97.1 Q ss_pred CCCEEEEECCCC-------CC-CCC--CCEEEEEEEEEEECCEECCCEEEEEE-CCCCCCCCHHH---EEECCCCCCCCC Q ss_conf 775899984678-------88-888--88899999999999988031379898-58882288657---242021012322 Q gi|254780818|r 6 KMRKIVFDIETT-------GL-DSK--NDRIIEIGAVELLDYSKTNRTFQVFL-CPNGRKNSPEA---LKLHGITDEFLK 71 (245) Q Consensus 6 ~mr~iv~D~ETT-------Gl-~~~--~d~Iieigav~i~~~~~~~~~f~~~i-~P~~~~i~~~~---~~ihGIt~~~l~ 71 (245) ..|...||+||. |+ +|. .|.||+|+++-...+... ..+.++ .....+.+... ..-.++.+-.+. T Consensus 319 plrvlsfDIE~~s~~~~~~~FP~a~~~~D~Ii~IS~~~~~~g~~~--~~~~~l~tl~~~~~~~~~~~~~~~~~~~~~~V~ 396 (1193) T 2gv9_A 319 AYKLMCFDIECKAGGEDELAFPVAGHPEDLVIQISCLLYDLSTTA--LEHVLLFSLGSCDLPESHLNELAARGLPTPVVL 396 (1193) T ss_dssp CCEEEEEEEEEECCSSCTTSCCCTTSTTSEEEEEEEEEEETTTCC--EEEEEEEEESCCCCCHHHHHHHHHTTCCCCEEE T ss_pred CCEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCC--CCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEE T ss_conf 977999987867798888889898888982899999998768876--645999944775555332234444578986799 Q ss_pred CCCCCCHHHHHHHHHHHCCC-CEEEEECC-CCCCCEEEECHHCCCCCC------------------------------CC Q ss_conf 48521002344777530023-20231023-224311210000011222------------------------------21 Q gi|254780818|r 72 DKPSFSSIFSEFWDFFNEQN-AEWIAHNA-KFDVGFINAELQRINKDP------------------------------LD 119 (245) Q Consensus 72 ~~p~f~ev~~~f~~fi~~~~-~~lVaHNa-~FD~~fL~~el~r~~~~~------------------------------~~ 119 (245) .-++-.+.+..|.+++...+ .++++||. .||+.||..-+..++... +. T Consensus 397 ~f~sE~eLL~~F~~~i~~~dPDIItGYNi~~FDlpYL~~Ra~~l~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~i~ 476 (1193) T 2gv9_A 397 EFDSEFEMLLAFMTLVKQYGPEFVTGYNIINFDWPFLLAKLTDIYKVPLDGYGRMNGRGVFRVWDIGQSHFQKRSKIKVN 476 (1193) T ss_dssp EESSHHHHHHHHHHHHHHHCCSEEEESSTTTTHHHHHHHHHHHTTCCCCTTTSSBSSSCCEEECC----------CEEET T ss_pred EECCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHCCCCCCCCCEECCCCCCCCCCCCEEEEC T ss_conf 80999999999999976539988997255477478999999997799878827557656620203566655654046234 Q ss_pred CCHHCCCHHCCCCCCCCCCCCHHHHHHHHC-CC---CCCCC---------------CCCCHHHHHHHHHHHHHH Q ss_conf 000011000000017764222378999718-75---45556---------------664026999999999999 Q gi|254780818|r 120 PSRIIDTLSIARRKHPSSRNDLNSLCKRYG-IT---ISHRS---------------KHGALLDSHLLSDVYIKM 174 (245) Q Consensus 120 ~~~~iDTl~lar~~~p~~~~~L~~l~~~~~-i~---~~~r~---------------~H~Al~Da~~~a~v~~~l 174 (245) .--++|.+.+++..+.-.+++|+++++.+- .. ++..+ +.-.+.||.++.+++.++ T Consensus 477 Gri~iDl~~~~k~~~kL~sY~L~~Va~~~Lg~~K~dv~~~~i~~~~~~~~~~~~~l~~Y~l~Da~lv~~L~~kl 550 (1193) T 2gv9_A 477 GMVNIDMYGIITDKIKLSSYKLNAVAEAVLKDKKKDLSYRDIPAYYATGPAQRGVIGEYCIQDSLLVGQLFFKF 550 (1193) T ss_dssp TBEEEEHHHHHTTTCCCSCCCHHHHHHHTSCCCCCCCCTTTHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred CEEEEEHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 66998437887663046668899999997277776668888888876567789999999988799999999998 No 24 >1uoc_A POP2; hydrolase, DEDD nuclease, mRNA degradation, poly(A) tail, transcription regulation, repressor, phosphorylation.; 2.3A {Saccharomyces cerevisiae} SCOP: c.55.3.9 Probab=98.47 E-value=1.6e-07 Score=65.63 Aligned_cols=167 Identities=16% Similarity=0.149 Sum_probs=99.6 Q ss_pred CCEEEEECCCCCCCCC-----CC----------------EEEEEEEEEEEC-C-EE----CCCEEEEEECCCCCCCCHHH Q ss_conf 7589998467888888-----88----------------899999999999-9-88----03137989858882288657 Q gi|254780818|r 7 MRKIVFDIETTGLDSK-----ND----------------RIIEIGAVELLD-Y-SK----TNRTFQVFLCPNGRKNSPEA 59 (245) Q Consensus 7 mr~iv~D~ETTGl~~~-----~d----------------~Iieigav~i~~-~-~~----~~~~f~~~i~P~~~~i~~~~ 59 (245) =.+|.+|+|-||+..+ .+ .|||+|..-... + .. ..-.|..+..|......+++ T Consensus 38 ~~fVAiD~Ef~Gi~~~~~~~~~~t~~~rY~~lk~nv~~~~iiQlGlt~f~~~g~~~~~~~~~w~FNf~~~~~~~~~~~~S 117 (289) T 1uoc_A 38 YNHVSISTEFVGTLARPIGTFRSKVDYHYQTMRANVDFLNPIQLGLSLSDANGNKPDNGPSTWQFNFEFDPKKEIMSTES 117 (289) T ss_dssp SCEEEEEEEEEC----------CHHHHHHHHHHHHHTTCEEEEEEEEEECTTCCCCSSSCSEEEEEBCCCTTCCCCCHHH T ss_pred CCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEEEEEEECCCCCCCCCCEEEEEEEECCCCCCCCCHHH T ss_conf 99899962517845788866689999999999986643632469999870488768887147899774486202325778 Q ss_pred EE---ECCCCCCCC-CCCCCCCHHHHHHHH--HHHCCCCEEEEECCCCCCCEEEECHHCCCCC------------CCCCC Q ss_conf 24---202101232-248521002344777--5300232023102322431121000001122------------22100 Q gi|254780818|r 60 LK---LHGITDEFL-KDKPSFSSIFSEFWD--FFNEQNAEWIAHNAKFDVGFINAELQRINKD------------PLDPS 121 (245) Q Consensus 60 ~~---ihGIt~~~l-~~~p~f~ev~~~f~~--fi~~~~~~lVaHNa~FD~~fL~~el~r~~~~------------~~~~~ 121 (245) ++ -||+.-... ..+-++..-.+.+.. .+...+.++|+||..+|+.+|-.-|.-..+| .+ . T Consensus 118 i~fL~~~G~DFnk~~~~GI~~~~f~~~~~~s~l~~~~~~~wv~f~g~yD~~yl~k~l~~~~LP~~~~~F~~~~~~~F--p 195 (289) T 1uoc_A 118 LELLRKSGINFEKHENLGIDVFEFSQLLMDSGLMMDDSVTWITYHAAYDLGFLINILMNDSMPNNKEDFEWWVHQYM--P 195 (289) T ss_dssp HHHHHHTTCCHHHHHHHCBCHHHHHHHHHTSSCSSCTTSEEEESSTTHHHHHHHHHHTTSCCCSSHHHHHHHHHHHC--S T ss_pred HHHHHHCCCCHHHHHHCCCCHHHHHHHHHHCCHHHCCCCEEEEECCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHC--C T ss_conf 99999859986899971998888889987500442478628960435579999999718989999999999999987--6 Q ss_pred HHCCCHHCCCCC---CC-----------CCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 001100000001---77-----------64222378999718754555666402699999999999973 Q gi|254780818|r 122 RIIDTLSIARRK---HP-----------SSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 (245) Q Consensus 122 ~~iDTl~lar~~---~p-----------~~~~~L~~l~~~~~i~~~~r~~H~Al~Da~~~a~v~~~ll~ 176 (245) .++||-.+++.. .. ..+.+|..+++.+++.... .+|.|-+||.+|+.||++|.. T Consensus 196 ~iyDtK~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~va~~l~v~r~g-~~HeAG~DS~lTg~~F~~l~~ 263 (289) T 1uoc_A 196 NFYDLNLVYKIIQEFKNPQLQQSSQQQQQQQYSLTTLADELGLPRFS-IFTTTGGQSLLMLLSFCQLSK 263 (289) T ss_dssp SEEEHHHHHHHHTTTCC-------------CCSHHHHHHHTTCCCCG-GGGSHHHHHHHHHHHHHHHHH T ss_pred CHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCC-CCCCCHHHHHHHHHHHHHHHH T ss_conf 26139999986213357543433221012348888999872998778-886607899999999999999 No 25 >2p51_A SPCC18.06C protein; DEDD nuclease fold, hydrolase, gene regulation; 1.40A {Schizosaccharomyces pombe} PDB: 3g0z_A 3g10_A Probab=98.34 E-value=6.7e-07 Score=61.74 Aligned_cols=168 Identities=14% Similarity=0.201 Sum_probs=99.9 Q ss_pred CCEEEEECCCCCCCC--CC---C----------------EEEEEEEEEEEC-C-EECC---CEEEEEECCCCCCCCHHHE Q ss_conf 758999846788888--88---8----------------899999999999-9-8803---1379898588822886572 Q gi|254780818|r 7 MRKIVFDIETTGLDS--KN---D----------------RIIEIGAVELLD-Y-SKTN---RTFQVFLCPNGRKNSPEAL 60 (245) Q Consensus 7 mr~iv~D~ETTGl~~--~~---d----------------~Iieigav~i~~-~-~~~~---~~f~~~i~P~~~~i~~~~~ 60 (245) =.+|.+|||-+|+-. .+ + .|||+|.--... + .... -.|..+.+|......++++ T Consensus 45 ~~fVAiDtEFpGiv~~p~~~~~~t~d~rY~~lr~nVd~l~iIQlGLt~~~~~g~~p~~~~twqFNF~f~~~~d~~~~~SI 124 (333) T 2p51_A 45 YPVVSMDTEFPGVVARPLGVFKSSDDYHYQTLRANVDSLKIIQIGLALSDEEGNAPVEACTWQFNFTFNLQDDMYAPESI 124 (333) T ss_dssp SCEEEEEEECCCCCCCCCSCCSSSHHHHHHHHHHHHHHSCCCEEEEEEECTTSCCCTTCSEEEEEBCCCTTTSCCCHHHH T ss_pred CCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEEEEEEECCCCCCCCCEEEEEEEEECCCCCCCCHHHH T ss_conf 99899953317725678766689789999999975421451479999772588878886379998797786655047899 Q ss_pred E---ECCCCCCCC-CCCCCCCHHHHHHHH--HHHCCCCEEEEECCCCCCCEEEECHHCCCCCC----------CCCCHHC Q ss_conf 4---202101232-248521002344777--53002320231023224311210000011222----------2100001 Q gi|254780818|r 61 K---LHGITDEFL-KDKPSFSSIFSEFWD--FFNEQNAEWIAHNAKFDVGFINAELQRINKDP----------LDPSRII 124 (245) Q Consensus 61 ~---ihGIt~~~l-~~~p~f~ev~~~f~~--fi~~~~~~lVaHNa~FD~~fL~~el~r~~~~~----------~~~~~~i 124 (245) + =|||.-..+ +++-.+.+-.+-+.. .+...+..+|.|+..||+++|-.-|.-..+|. .....++ T Consensus 125 ~fL~~~G~DF~k~~~~GI~~~~F~ell~~sglv~~~~v~Wvtfhg~yD~~yLlk~l~g~~LP~~~~eF~~~l~~~FP~vY 204 (333) T 2p51_A 125 ELLTKSGIDFKKHQEVGIEPADFAELLIGSGLVLQEEVTWITFHSGYDFAYLLKAMTQIPLPAEYEEFYKILCIYFPKNY 204 (333) T ss_dssp HHHHHTTCCHHHHHHHCBCHHHHHHHHHTTTSSSCTTCEEEESSCHHHHHHHHHHHHCSCCCSSHHHHHHHHHHHSSSEE T ss_pred HHHHHCCCCHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHH T ss_conf 99997496778898609988888999985055416887399806616799999997088788678999999999776287 Q ss_pred CCHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 1000000017764222378999718754555666402699999999999973 Q gi|254780818|r 125 DTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIKMMV 176 (245) Q Consensus 125 DTl~lar~~~p~~~~~L~~l~~~~~i~~~~r~~H~Al~Da~~~a~v~~~ll~ 176 (245) ||--|++.. .+.+.+|..|++.+++.--. ..|-|-+||.+|++||.+|.. T Consensus 205 D~Kyia~~~-~~~~~gL~~lA~~L~v~r~g-~~HqAGsDSllT~~~F~kl~~ 254 (333) T 2p51_A 205 DIKYIMKSV-LNNSKGLQDIADDLQIHRIG-PQHQAGSDALLTARIFFEIRS 254 (333) T ss_dssp EHHHHHTTT-TCCCCCHHHHHHHTTCCCCS-CTTSHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHC-CCCCCCHHHHHHHCCCCCCC-CCCCCHHHHHHHHHHHHHHHH T ss_conf 189999761-56676599999974998767-764530589999999999999 No 26 >3iay_A DNA polymerase delta catalytic subunit; protein-DNA complex, DNA replication, DNA- binding, DNA-directed DNA polymerase, exonuclease; HET: DNA DOC DCP; 2.00A {Saccharomyces cerevisiae} Probab=98.33 E-value=1.1e-06 Score=60.30 Aligned_cols=157 Identities=19% Similarity=0.253 Sum_probs=91.8 Q ss_pred CCCEEEEECCCCCC-----CCCCCEEEEEEEEEEECCEECCCEEEE-EECCCCCCCCHHHEEECCCCCCCCCCCCCCCHH Q ss_conf 77589998467888-----888888999999999999880313798-985888228865724202101232248521002 Q gi|254780818|r 6 KMRKIVFDIETTGL-----DSKNDRIIEIGAVELLDYSKTNRTFQV-FLCPNGRKNSPEALKLHGITDEFLKDKPSFSSI 79 (245) Q Consensus 6 ~mr~iv~D~ETTGl-----~~~~d~Iieigav~i~~~~~~~~~f~~-~i~P~~~~i~~~~~~ihGIt~~~l~~~p~f~ev 79 (245) .+|.+.||+||++- +|..|.|++|+++.-..+.......+. ..++. .+++ ...+...++-.+. T Consensus 248 plrilsfDIE~~~~~g~fp~~~~d~ii~I~~~~~~~g~~~~~~~~~~~~~~~-~~~~----------~~~v~~~~sE~eL 316 (919) T 3iay_A 248 PLRIMSFDIECAGRIGVFPEPEYDPVIQIANVVSIAGAKKPFIRNVFTLNTC-SPIT----------GSMIFSHATEEEM 316 (919) T ss_dssp CCEEEEEEEEECCCTTSCCCTTTCCEEEEEEEEEETTCSSCSEEEEEEESCC-CCBT----------TBEEEEESSHHHH T ss_pred CCEEEEEEEEECCCCCCCCCCCCCCEEEEEEEEECCCCCCCEEEEEECCCCC-CCCC----------CCEEEEECCHHHH T ss_conf 8279999999786899886433451124678762267766426413415776-7889----------9679981999999 Q ss_pred HHHHHHHHHCCC-CEEEEECC-CCCCCEEEECHHCCCCCCC---------------------------------CCCHHC Q ss_conf 344777530023-20231023-2243112100000112222---------------------------------100001 Q gi|254780818|r 80 FSEFWDFFNEQN-AEWIAHNA-KFDVGFINAELQRINKDPL---------------------------------DPSRII 124 (245) Q Consensus 80 ~~~f~~fi~~~~-~~lVaHNa-~FD~~fL~~el~r~~~~~~---------------------------------~~~~~i 124 (245) +..|.+|+...| .+++|||. .||+.+|..-...+|.+.+ ..--.+ T Consensus 317 L~~F~~~i~~~DPDII~GyNi~~FDlpYL~~Ra~~l~i~~~~~~gr~~~~~~~~~~~~~~~~~~g~~~~~~~~i~Gr~~i 396 (919) T 3iay_A 317 LSNWRNFIIKVDPDVIIGYNTTNFDIPYLLNRAKALKVNDFPYFGRLKTVKQEIKESVFSSKAYGTRETKNVNIDGRLQL 396 (919) T ss_dssp HHHHHHHHHHHCCSEEEESSTTTTHHHHHHHHHHHTTCTTCSCCSSBTTCCCCBCCEEEEETTTEEEEECCBCCTTCEEE T ss_pred HHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCEEEE T ss_conf 99999998662998798757857537999999998587514331765776644565643454335644228987378998 Q ss_pred CCHHCCCCCCCCCCCCHHHHHHHH-CCCCCC---C---------------CCCCCHHHHHHHHHHHHH Q ss_conf 100000001776422237899971-875455---5---------------666402699999999999 Q gi|254780818|r 125 DTLSIARRKHPSSRNDLNSLCKRY-GITISH---R---------------SKHGALLDSHLLSDVYIK 173 (245) Q Consensus 125 DTl~lar~~~p~~~~~L~~l~~~~-~i~~~~---r---------------~~H~Al~Da~~~a~v~~~ 173 (245) |++.+++..+.-.+++|+++|.+| |..... . -+--.+.||.++.+++.+ T Consensus 397 Dl~~~~~~~~kl~sy~L~~Va~~~lg~~K~dv~~~~i~~~~~~~~e~~~~l~~Y~l~Da~l~~~L~~k 464 (919) T 3iay_A 397 DLLQFIQREYKLRSYTLNAVSAHFLGEQKEDVHYSIISDLQNGDSETRRRLAVYCLKDAYLPLRLMEK 464 (919) T ss_dssp EHHHHHHHHCCCSCCCHHHHHHHHHCCC------CCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred EHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 77999987565672328999987715887643044435777535267999999985436889999999 No 27 >2hbj_A Exosome complex exonuclease RRP6; RNA metabolism, RNA surveillance, RNA processing, hydrolase, gene regulation; 2.10A {Saccharomyces cerevisiae} SCOP: a.60.8.4 c.55.3.5 PDB: 2hbk_A 2hbl_A* 2hbm_A* Probab=98.30 E-value=1.5e-06 Score=59.45 Aligned_cols=133 Identities=18% Similarity=0.260 Sum_probs=80.9 Q ss_pred CCCEEEEECCCCCCCCCCCEEEEEEEEEEECCEECCCEEEEEECCCCCCCCHHHEEECCCCCCCCCCCCCCCHHHHHHHH Q ss_conf 77589998467888888888999999999999880313798985888228865724202101232248521002344777 Q gi|254780818|r 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWD 85 (245) Q Consensus 6 ~mr~iv~D~ETTGl~~~~d~Iieigav~i~~~~~~~~~f~~~i~P~~~~i~~~~~~ihGIt~~~l~~~p~f~ev~~~f~~ 85 (245) ..+.|.|||||++.+....++. .|.+.. ++. ..+|.|. .+... + ..+.++ T Consensus 105 ~~~~iavDtE~~~~~t~~~~l~---LiQi~t----~~~-~~liD~l--~l~~~-----------l-------~~L~~l-- 154 (410) T 2hbj_A 105 NTKEIAVDLEHHDYRSYYGIVC---LMQIST----RER-DYLVDTL--KLREN-----------L-------HILNEV-- 154 (410) T ss_dssp TCSEEEEEEEEECSSSSSCEEE---EEEEEC----SSC-EEEEETT--TTTTT-----------G-------GGGHHH-- T ss_pred CCCEEEEEEEECCCCCCCCCEE---EEEEEE----CCC-CEEEEEC--CCCCC-----------H-------HHHHHH-- T ss_conf 5991999704778851677068---999981----897-7898501--45335-----------8-------999999-- Q ss_pred HHHCCCCEEEEECCCCCCCEEEECHHCCCCCCCCCCHHCCCHHCCCCCCCCCCCCHHHHHHHH-CCCCCC---------- Q ss_conf 530023202310232243112100000112222100001100000001776422237899971-875455---------- Q gi|254780818|r 86 FFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRY-GITISH---------- 154 (245) Q Consensus 86 fi~~~~~~lVaHNa~FD~~fL~~el~r~~~~~~~~~~~iDTl~lar~~~p~~~~~L~~l~~~~-~i~~~~---------- 154 (245) +...+-.-|+||+.||+.+|.+.+ |.. ...++||...++.+- ..+.+|++|+.+| |+.+.. T Consensus 155 -l~d~~I~KV~H~~~~Dl~~L~~~~---g~~---~~~~fDT~ia~~~l~-~~~~sL~~L~~~~l~~~l~K~~q~sDW~~R 226 (410) T 2hbj_A 155 -FTNPSIVKVFHGAFMDIIWLQRDL---GLY---VVGLFDTYHASKAIG-LPRHSLAYLLENFANFKTSKKYQLADWRIR 226 (410) T ss_dssp -HTCTTSEEEESSCHHHHHHHHHHH---CCC---CSSEEEHHHHHHHHT-CSCCSHHHHHHHHSCCCCCCTTTTSCTTCS T ss_pred -HCCCCCEEEEECHHHHHHHHHHHC---CCC---CCCCCCHHHHHHHCC-CCCCCHHHHHHHHHCCCCCCCHHHHHHCCC T ss_conf -749994299955787799999845---756---787202699999809-887569999998736665641334200455 Q ss_pred ----CCCCCCHHHHHHHHHHHHHHHH Q ss_conf ----5666402699999999999973 Q gi|254780818|r 155 ----RSKHGALLDSHLLSDVYIKMMV 176 (245) Q Consensus 155 ----r~~H~Al~Da~~~a~v~~~ll~ 176 (245) .+.+-|..||..|-.+|-.|.. T Consensus 227 PL~~~qi~YAa~Dv~~Ll~ly~~L~~ 252 (410) T 2hbj_A 227 PLSKPMTAAARADTHFLLNIYDQLRN 252 (410) T ss_dssp SCCHHHHHHHHHHHHTHHHHHHHHHH T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 58799999998537889999999999 No 28 >3cym_A Uncharacterized protein BAD_0989; structural genomics, unknown function, ribonuclease D, exonuclease; 2.10A {Bifidobacterium adolescentis ATCC15703} Probab=98.07 E-value=3.9e-06 Score=56.92 Aligned_cols=129 Identities=22% Similarity=0.289 Sum_probs=79.9 Q ss_pred EEEEECCCCCCCCCCCE--EEEEEEEEEECCEECCCEEEEEECCCCCCCCHHHEEECCCCCCCCCCCCCCCHHHHHHHHH Q ss_conf 89998467888888888--9999999999998803137989858882288657242021012322485210023447775 Q gi|254780818|r 9 KIVFDIETTGLDSKNDR--IIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDF 86 (245) Q Consensus 9 ~iv~D~ETTGl~~~~d~--Iieigav~i~~~~~~~~~f~~~i~P~~~~i~~~~~~ihGIt~~~l~~~p~f~ev~~~f~~f 86 (245) .|.|||||++++....+ +|||+. .+ .. ..+|.|. .+.. ..+ .+..+.+. T Consensus 40 ~iavDtE~~~~~~y~~~~~LvQi~~---~g-----~~-~~liDp~--~~~~--------------~~~----~~~~L~~~ 90 (440) T 3cym_A 40 SLAADAERASGFRYGHEDWLVQFKR---DG-----AG-IGLLDPQ--ALAA--------------AGA----DWNDFNRA 90 (440) T ss_dssp EEEEEEEECTTTSSSCCEEEEEEEE---ET-----TE-EEEECHH--HHHH--------------TTC----CHHHHHHH T ss_pred CEEEECCCCCCCCCCCEEEEEEEEE---CC-----CC-EEEEECC--CCCC--------------CCC----HHHHHHHH T ss_conf 1899798678880687478999867---89-----88-7998055--5565--------------553----17999998 Q ss_pred HHCCCCEEEEECCCCCCCEEEECHHCCCCCCCCCCHHCCCHHCCCCCCCCCCCCHHHHHHHH-CCCCCC---------C- Q ss_conf 30023202310232243112100000112222100001100000001776422237899971-875455---------5- Q gi|254780818|r 87 FNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRY-GITISH---------R- 155 (245) Q Consensus 87 i~~~~~~lVaHNa~FD~~fL~~el~r~~~~~~~~~~~iDTl~lar~~~p~~~~~L~~l~~~~-~i~~~~---------r- 155 (245) +. +...|+||+.||+.+| .++|..+ .+++||+..++..- ..+.+|+.||+.| |+.+.. | T Consensus 91 l~--~i~kv~H~~~~Dl~~l----~~~g~~~---~~~fDTqiAa~~lg-~~~~gl~~l~~~~lg~~l~K~~~~sdW~~rP 160 (440) T 3cym_A 91 VG--DAVWILHDSLQDLPGF----DELGMEP---QRLFDTEIAARLLG-LKRFGLAAVTEHFLGLTLAKEHSAADWSYRP 160 (440) T ss_dssp HT--TCEEEESSHHHHHHHH----HHHTCCC---CEEEEHHHHHHHTT-CSSCSHHHHHHHHHCEECCCCCTTCCTTCSS T ss_pred HC--CCEEEEECCHHHHHHH----HHCCCCC---CCCHHHHHHHHHCC-CCCCCHHHHHHHHHCCCCCHHHHHHHHCCCC T ss_conf 67--9819997747899999----9878812---88122999998728-8877799999999476656388887617877 Q ss_pred ----CCCCCHHHHHHHHHHHHHHHH Q ss_conf ----666402699999999999973 Q gi|254780818|r 156 ----SKHGALLDSHLLSDVYIKMMV 176 (245) Q Consensus 156 ----~~H~Al~Da~~~a~v~~~ll~ 176 (245) +..-|..|+..|-++|-.|.. T Consensus 161 Ls~~q~~YAa~Dv~~L~~l~~~l~~ 185 (440) T 3cym_A 161 LPRDWRNYAALDVELLIELETKMRA 185 (440) T ss_dssp CCHHHHHHHHHHHHTHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 8889999998606778999999999 No 29 >1qht_A Protein (DNA polymerase); archaea, hyperthermostable, family B polymerase, POL alpha family polymerase, transferase; 2.10A {Thermococcus SP} SCOP: c.55.3.5 e.8.1.1 PDB: 1tgo_A 2vwj_A* 2vwk_A* 1wns_A* 1wn7_A 1qqc_A* 3a2f_A* 2jgu_A* 1d5a_A Probab=97.98 E-value=2e-05 Score=52.53 Aligned_cols=150 Identities=13% Similarity=0.171 Sum_probs=89.5 Q ss_pred CCCCEEEEECCCCCC---CCCCCEEEEEEEEEEECCEECCCEEEEEECCCCCCCCHHHEEECCCCCCCCCCCCCCCHHHH Q ss_conf 777589998467888---88888899999999999988031379898588822886572420210123224852100234 Q gi|254780818|r 5 NKMRKIVFDIETTGL---DSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFS 81 (245) Q Consensus 5 ~~mr~iv~D~ETTGl---~~~~d~Iieigav~i~~~~~~~~~f~~~i~P~~~~i~~~~~~ihGIt~~~l~~~p~f~ev~~ 81 (245) ..+|.+.||+||+.. ++..|.|++|++. .+. . -..+.. +.++ .+.+.--++-.+.+. T Consensus 133 ~~l~i~s~DIE~~~~~~~~~~~d~I~~Is~~--~~~----~-~~vi~~---~~~d----------~~~v~~~~~E~~LL~ 192 (775) T 1qht_A 133 EELTMLAFAIATLYHEGEEFGTGPILMISYA--DGS----E-ARVITW---KKID----------LPYVDVVSTEKEMIK 192 (775) T ss_dssp CCCCEEEEEEEECCCTTCCTTCSCEEEEEEE--CSS----C-EEEEES---SCCC----------CSSEEECSCHHHHHH T ss_pred CCCEEEEEEEEECCCCCCCCCCCCEEEEEEE--CCC----C-CEEEEC---CCCC----------CCEEEECCCHHHHHH T ss_conf 9836999998757876888777988999996--389----7-079967---7878----------762787199999999 Q ss_pred HHHHHHHCCC-CEEEEECC-CCCCCEEEECHHCCCCCC---------------------CCCCHHCCCHHCCCCCCCCCC Q ss_conf 4777530023-20231023-224311210000011222---------------------210000110000000177642 Q gi|254780818|r 82 EFWDFFNEQN-AEWIAHNA-KFDVGFINAELQRINKDP---------------------LDPSRIIDTLSIARRKHPSSR 138 (245) Q Consensus 82 ~f~~fi~~~~-~~lVaHNa-~FD~~fL~~el~r~~~~~---------------------~~~~~~iDTl~lar~~~p~~~ 138 (245) .|.+++...| .+++|||. .||+.+|..-..++|.+. +..--++|++.++++.+.-.+ T Consensus 193 ~F~~~i~~~dPDII~GyN~~~FDlpyL~~R~~~l~i~~~~~r~~~~~~~~~~~~~~~~~i~Gri~iDl~~~~~~~~~l~s 272 (775) T 1qht_A 193 RFLRVVREKDPDVLITYNGDNFDFAYLKKRCEELGIKFTLGRDGSEPKIQRMGDRFAVEVKGRIHFDLYPVIRRTINLPT 272 (775) T ss_dssp HHHHHHHHHCCSEEEESSTTTTHHHHHHHHHHHTTCCCCCSTTSCCCEEEEETTEEEEECTTSEEEEHHHHHHHHSCCSC T ss_pred HHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCEECCCCCCCCEEECCCEEEEEECCEEEEEHHHHHHHHCCCCC T ss_conf 99999987199889870887752999999999829810103568876543448668998879899983999976466766 Q ss_pred CCHHHHHHHH-CCCCCC----------C---C----CCCCHHHHHHHHHHHHHH Q ss_conf 2237899971-875455----------5---6----664026999999999999 Q gi|254780818|r 139 NDLNSLCKRY-GITISH----------R---S----KHGALLDSHLLSDVYIKM 174 (245) Q Consensus 139 ~~L~~l~~~~-~i~~~~----------r---~----~H~Al~Da~~~a~v~~~l 174 (245) ++|+++++.+ |..... + + ..-.+.||.++.+++..+ T Consensus 273 y~L~~Va~~~lg~~K~d~~~~~i~~~~~~~~~~~~~~~Y~~~D~~lv~~L~~kl 326 (775) T 1qht_A 273 YTLEAVYEAVFGKPKEKVYAEEIAQAWESGEGLERVARYSMEDAKVTYELGREF 326 (775) T ss_dssp CCHHHHHHHHHCCCCCCCCHHHHHHHHTTTCSHHHHHHHHHHHHHHHHHHHHHH T ss_pred CCHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH T ss_conf 668999999849975556999999987526329999999699999999998878 No 30 >2py5_A DNA polymerase; protein-DNA complex, replication, transferase/DNA complex; HET: DNA; 1.60A {Bacillus phage PHI29} SCOP: c.55.3.5 e.8.1.1 PDB: 1xhz_A* 1xhx_A* 2ex3_A* 1xi1_A* 2pyj_A* 2pyl_A* 2pzs_A* Probab=97.84 E-value=3.3e-05 Score=51.13 Aligned_cols=134 Identities=16% Similarity=0.177 Sum_probs=75.8 Q ss_pred CCEEEEECCCCCCCCCCCEEEEEEEEEEECCEECCCEEEEEECCCCCCCCHHHEEECCCCCCCCCCCCCCCHHHHHHHHH Q ss_conf 75899984678888888889999999999998803137989858882288657242021012322485210023447775 Q gi|254780818|r 7 MRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDF 86 (245) Q Consensus 7 mr~iv~D~ETTGl~~~~d~Iieigav~i~~~~~~~~~f~~~i~P~~~~i~~~~~~ihGIt~~~l~~~p~f~ev~~~f~~f 86 (245) ++-.++|+||+ .+...+++-.+|+....+ . ..|. + .+.+++|+++ T Consensus 6 ~~~~~~D~Et~-~~~~~~~~~~~~~~~~~~---~-~~~~--~----------------------------~~~l~~f~~~ 50 (575) T 2py5_A 6 RKMYSCAFETT-TKVEDCRVWAYGYMNIED---H-SEYK--I----------------------------GNSLDEFMAW 50 (575) T ss_dssp CCEEEEEEEEC-CBTTBCCEEEEEEEESSC---T-TCEE--E----------------------------ESCHHHHHHH T ss_pred CEEEEEEEEEC-CCCCCCEEEEEEEEECCC---C-EEEE--H----------------------------HHHHHHHHHH T ss_conf 51799999706-897773147999971798---4-0777--0----------------------------8999999999 Q ss_pred HHCCCCEEEEECCCCCCCEEEECHHCCCCCCCC----C--------CHHCCCHHC-------------CCCCCCCCCCCH Q ss_conf 300232023102322431121000001122221----0--------000110000-------------000177642223 Q gi|254780818|r 87 FNEQNAEWIAHNAKFDVGFINAELQRINKDPLD----P--------SRIIDTLSI-------------ARRKHPSSRNDL 141 (245) Q Consensus 87 i~~~~~~lVaHNa~FD~~fL~~el~r~~~~~~~----~--------~~~iDTl~l-------------ar~~~p~~~~~L 141 (245) +...+..+++||.+||..||...+.+.+..... . ...+-.+.. .+.-+.-.+.|| T Consensus 51 i~~~dpdi~~hNl~FD~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~DS~~l~~~SL 130 (575) T 2py5_A 51 VLKVQADLYFHNLKFAGAFIINWLERNGFKWSADGLPNTYNTIISRMGQWYMIDICLGYKGKRKIHTVIYDSLKKLPFPV 130 (575) T ss_dssp HHHHCCEEEETTHHHHHHHHHHHHHHTTCEECTTCCTTEEEEEEBTTCCEEEEEEEEEEETTEEEEEEEEEHHHHSCSCH T ss_pred HHHCCCCEEEECCCCCHHHHHHHHHHCCCCCEECCCCCCCCCEEEECCEEEEEEEEEEECCEEEEEEEEEECCCCCCCCH T ss_conf 98659979998875799999999997098620324676665226735457999899960330136899984214484479 Q ss_pred HHHHHHHCCCCCCCC-C----------------CCCHHHHHHHHHHHHHHH Q ss_conf 789997187545556-6----------------640269999999999997 Q gi|254780818|r 142 NSLCKRYGITISHRS-K----------------HGALLDSHLLSDVYIKMM 175 (245) Q Consensus 142 ~~l~~~~~i~~~~r~-~----------------H~Al~Da~~~a~v~~~ll 175 (245) +.+++.|+++..... . --++.||.+|++++..+. T Consensus 131 ~~va~~f~l~~~K~~~~~~~~~~~~~~~~~~~~~Y~~~Dv~ll~~i~~~~~ 181 (575) T 2py5_A 131 KKIAKDFKLTVLKGDIDYHKERPVGYKITPEEYAYIKNDIQIIAEALLIQF 181 (575) T ss_dssp HHHHHHTTCCCCSSCCCTTSCCCTTCCCCHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHCCCCCCCCCCHHHCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999987374545564774441022332329899999999999999999999 No 31 >3k59_A POL II, DNA polymerase II; protein-DNA complex, DNA damage, DNA repair, DNA-binding; HET: DNA DOC DCP; 1.92A {Escherichia coli k-12} PDB: 3k57_A* 3k58_A* 3k5l_A* 3k5m_A* 3k5n_A* 3k5o_A* 3maq_A* 1q8i_A* Probab=97.71 E-value=0.00023 Score=45.94 Aligned_cols=151 Identities=19% Similarity=0.233 Sum_probs=84.4 Q ss_pred CCCEEEEECCCCCCCCCCCEEEEEEEEEEECCEECCCEEEEEECCCCCCCCHHHEEECCCCCCCCCCCCCCCHHHHHHHH Q ss_conf 77589998467888888888999999999999880313798985888228865724202101232248521002344777 Q gi|254780818|r 6 KMRKIVFDIETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWD 85 (245) Q Consensus 6 ~mr~iv~D~ETTGl~~~~d~Iieigav~i~~~~~~~~~f~~~i~P~~~~i~~~~~~ihGIt~~~l~~~p~f~ev~~~f~~ 85 (245) ..|.+.||+||++ .+.|..||. .+ .++..-..+.|........ + -.+...++..+.+..|.+ T Consensus 152 pl~vlsfDIE~~~----~~~i~~I~~---~~---~~~~~v~~~~~~~~~~~~~-----~---~~v~~~~sE~~LL~~F~~ 213 (786) T 3k59_A 152 PLKWVSIDIETTR----HGELYCIGL---EG---CGQRIVYMLGPENGDASSL-----D---FELEYVASRPQLLEKLNA 213 (786) T ss_dssp CCCEEEEEEEECT----TSCEEEEEE---EE---TTEEEEEEESSCCSCCTTC-----S---SEEEEESSHHHHHHHHHH T ss_pred CCEEEEEEEEECC----CCCEEEEEE---EC---CCCCEEEEEECCCCCCCCC-----C---EEEEEECCHHHHHHHHHH T ss_conf 8148999889758----898899998---56---9983899994677777777-----5---389996999999999999 Q ss_pred HHHCCC-CEEEEECC-CCCCCEEEECHHCCCCCC------------------------CCCCHHCCCHHCCCCCC-CCCC Q ss_conf 530023-20231023-224311210000011222------------------------21000011000000017-7642 Q gi|254780818|r 86 FFNEQN-AEWIAHNA-KFDVGFINAELQRINKDP------------------------LDPSRIIDTLSIARRKH-PSSR 138 (245) Q Consensus 86 fi~~~~-~~lVaHNa-~FD~~fL~~el~r~~~~~------------------------~~~~~~iDTl~lar~~~-p~~~ 138 (245) ++...| .+++|||. .||+.+|..-..++|.+. +..--++|.+...+..+ .-.+ T Consensus 214 ~i~~~DPDII~GyNi~~FDlpyL~~Ra~~~~i~~~lgr~~~~~~~~~~~~~~~~~~~~i~Gr~~iD~~~~~~~~~~~~~s 293 (786) T 3k59_A 214 WFANYDPDVIIGWNVVQFDLRMLQKHAERYRLPLRLGRDNSELEWREHGFKNGVFFAQAKGRLIIDGIEALKSAFWNFSS 293 (786) T ss_dssp HHHHHCCSEEEESSTTTTHHHHHHHHHHHHTCCCCCBTTTBCCEEEECSSSTTCEEEECTTCEEEEHHHHHHHTTCCCSC T ss_pred HHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCEEEHHHHHHHHHHHHCCCC T ss_conf 99970999999728868679999999998189730267675023001343465378710768808999999997525543 Q ss_pred CCHHHHHHHH-CCCCCCCC-------------------CCCCHHHHHHHHHHHHHH Q ss_conf 2237899971-87545556-------------------664026999999999999 Q gi|254780818|r 139 NDLNSLCKRY-GITISHRS-------------------KHGALLDSHLLSDVYIKM 174 (245) Q Consensus 139 ~~L~~l~~~~-~i~~~~r~-------------------~H~Al~Da~~~a~v~~~l 174 (245) ++|+++++.+ |-...... +.-.+-||.++.+++.++ T Consensus 294 y~L~~va~~~L~~~k~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~D~~L~~~L~~kl 349 (786) T 3k59_A 294 FSLETVAQELLGEGKSIDNPWDRMDEIDRRFAEDKPALATYNLKNCELVTQIFHKT 349 (786) T ss_dssp CSHHHHHHHHHCCCCC-CCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH T ss_pred CCHHHHHHHHCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 78899999975788666786775345542461458899999988899999999985 No 32 >2e6m_A Werner syndrome ATP-dependent helicase homolog; APO form, hydrolase; 2.00A {Mus musculus} PDB: 2e6l_A 2fby_A 2fbv_A 2fbx_A 2fbt_A 2fc0_A* Probab=97.61 E-value=0.00012 Score=47.66 Aligned_cols=88 Identities=15% Similarity=0.079 Sum_probs=58.5 Q ss_pred HHHHHHCCCCEEEEECCCCCCCEEEECHHCCCCCCCCCCHHCCCHHCCCCCCC-CCCCCHHHHHHHH-CCCCCC------ Q ss_conf 77753002320231023224311210000011222210000110000000177-6422237899971-875455------ Q gi|254780818|r 83 FWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHP-SSRNDLNSLCKRY-GITISH------ 154 (245) Q Consensus 83 f~~fi~~~~~~lVaHNa~FD~~fL~~el~r~~~~~~~~~~~iDTl~lar~~~p-~~~~~L~~l~~~~-~i~~~~------ 154 (245) +..++....-+.|+||+.+|..+|... .|.. ...++|+..+++.... ..+.+|.++|..| |+.... T Consensus 88 L~~lL~~~~i~Kvg~~~~~D~~~L~~~---~~~~---~~~~~d~~~~~~~~~~~~~~~~l~~l~~~~l~~~~~k~k~~q~ 161 (208) T 2e6m_A 88 LKMLLENKSIKKAGVGIEGDQWKLLRD---FDVK---LESFVELTDVANEKLKCAETWSLNGLVKHVLGKQLLKDKSIRC 161 (208) T ss_dssp HHHHHTCTTSEEEESSHHHHHHHHHHH---HCCC---CCSEEEHHHHHHHHTTCCCCCCHHHHHHHHHSCBCCCCHHHHT T ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHC---CCCC---CCCCCCCHHHHHHHHCCCCCCCHHHHHHHHCCEECCCHHHHHC T ss_conf 999976998230343375189998430---2234---5731215389999815876535999999982932142075534 Q ss_pred ----------CCCCCCHHHHHHHHHHHHHHHH Q ss_conf ----------5666402699999999999973 Q gi|254780818|r 155 ----------RSKHGALLDSHLLSDVYIKMMV 176 (245) Q Consensus 155 ----------r~~H~Al~Da~~~a~v~~~ll~ 176 (245) .+-+-|-.||.++..+|.+|.. T Consensus 162 s~W~~rpLt~~qi~YAA~Da~~~~~l~~~L~~ 193 (208) T 2e6m_A 162 SNWSNFPLTEDQKLYAATDAYAGLIIYQKLGN 193 (208) T ss_dssp SCTTSSSCCHHHHHHHHHHHHHHHHHHHHHHT T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 77765889999999999999999999999986 No 33 >1s5j_A DNA polymerase I; replication, disulfide bonds, transferase; HET: DNA; 2.40A {Sulfolobus solfataricus} SCOP: c.55.3.5 e.8.1.1 Probab=97.53 E-value=0.00021 Score=46.11 Aligned_cols=154 Identities=20% Similarity=0.262 Sum_probs=79.6 Q ss_pred CCCEEEEECCCC-----CC-CCCCC--EEEEEEEEEEECCEECCCEEEEEECCCCCCCCHHHEEECCCCCCCCCCCCCCC Q ss_conf 775899984678-----88-88888--89999999999998803137989858882288657242021012322485210 Q gi|254780818|r 6 KMRKIVFDIETT-----GL-DSKND--RIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFS 77 (245) Q Consensus 6 ~mr~iv~D~ETT-----Gl-~~~~d--~Iieigav~i~~~~~~~~~f~~~i~P~~~~i~~~~~~ihGIt~~~l~~~p~f~ 77 (245) .+|.+.||+||. |+ +|..| .||+|+++- .++ .+... .++.. ........+-|.+ +...++-. T Consensus 189 ~lrilsfDIE~~s~~~~~fPdp~~~~~~ii~I~~~~-~~~---~~~~~-~~~~~--~~~~~~~~~~~~~---v~~f~sEk 258 (847) T 1s5j_A 189 KIKRVAIDIEVYTPVKGRIPDSQKAEFPIISIALAG-SDG---LKKVL-VLNRN--DVNEGSVKLDGIS---VERFNTEY 258 (847) T ss_dssp CCCEEEEEEEECCSSSSCCCCTTTCCSCEEEEEEEE-TTS---CEEEE-EECSS--CCCCCCEEETTEE---EEEESSHH T ss_pred CCEEEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEE-CCC---CEEEE-EEECC--CCCCCCCCCCCCE---EEEECCHH T ss_conf 844999998878888899989434774289999995-689---98999-98167--7776654579958---99989899 Q ss_pred HHHHHHHHHHHCCCCEEEEECC-CCCCCEEEECHHCCCCCCC----CC----------CHHCCCH--------HCCCCCC Q ss_conf 0234477753002320231023-2243112100000112222----10----------0001100--------0000017 Q gi|254780818|r 78 SIFSEFWDFFNEQNAEWIAHNA-KFDVGFINAELQRINKDPL----DP----------SRIIDTL--------SIARRKH 134 (245) Q Consensus 78 ev~~~f~~fi~~~~~~lVaHNa-~FD~~fL~~el~r~~~~~~----~~----------~~~iDTl--------~lar~~~ 134 (245) +.+..|.+++.+ -.+++|||. .||+.+|..-..++|.... .. ...+|.. ...+... T Consensus 259 eLL~~F~~~i~d-pDII~GyNi~~FDlpYL~~Ra~~lg~~~~~~~~~~~g~~~~~~~~~~~~d~~~~~~~d~~~~~~~~~ 337 (847) T 1s5j_A 259 ELLGRFFDILLE-YPIVLTFNGDDFDLPYIYFRALKLGYFPEEIPIDVAGKDEAKYLAGLHIDLYKFFFNKAVRNYAFEG 337 (847) T ss_dssp HHHHHHHHHHTT-CSEEEESSTTTTHHHHHHHHHHTTTCCGGGCSEECCSTTCCEETTSEEEEHHHHHTSHHHHHHTSTT T ss_pred HHHHHHHHHCCC-CCEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEECCCCEEEEEEEEEEEEEEEEEHHHHHHHHHHHC T ss_conf 999999974228-9979883105665899999999809983204253057323578620688653357598999987641 Q ss_pred CCCCCCHHHHHHHH-CCCCCCC-----------CCCCCHHHHHHHHHH Q ss_conf 76422237899971-8754555-----------666402699999999 Q gi|254780818|r 135 PSSRNDLNSLCKRY-GITISHR-----------SKHGALLDSHLLSDV 170 (245) Q Consensus 135 p~~~~~L~~l~~~~-~i~~~~r-----------~~H~Al~Da~~~a~v 170 (245) .-.+++|+++|+.+ |...... -..-.+-||.++..+ T Consensus 338 ~l~sy~L~~Va~~~Lg~~K~~~~~~~~~~d~~~l~~Y~~~D~~l~~~L 385 (847) T 1s5j_A 338 KYNEYNLDAVAKALLGTSKVKVDTLISFLDVEKLIEYNFRDAEITLQL 385 (847) T ss_dssp CCSSCSHHHHHHHHHCCCCC--SSCTTTCCHHHHHHHHHHHHHHHHHT T ss_pred CCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 302077999999983888422222020100688988875556888899 No 34 >3m8r_A DNA polymerase I, thermostable; DNA polymerase, DNA replication, nucleotides, modified nucleotide, artificial nucleotide; HET: DNA DOC HXZ 15P; 2.00A {Thermus aquaticus} PDB: 1jxe_A* 3ktq_A* 3lwl_A* 3lwm_A* 3m8s_A* 1ktq_A* 5ktq_A* 4ktq_A* 1qtm_A* 2ktq_A* 1qss_A* 1qsy_A* Probab=97.16 E-value=0.00056 Score=43.46 Aligned_cols=125 Identities=11% Similarity=0.080 Sum_probs=75.9 Q ss_pred CCCCCCCCCCCEEEEEEEEEEECCEECCCEEEEEECCCCCCCCHHHEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCE Q ss_conf 46788888888899999999999988031379898588822886572420210123224852100234477753002320 Q gi|254780818|r 14 IETTGLDSKNDRIIEIGAVELLDYSKTNRTFQVFLCPNGRKNSPEALKLHGITDEFLKDKPSFSSIFSEFWDFFNEQNAE 93 (245) Q Consensus 14 ~ETTGl~~~~d~Iieigav~i~~~~~~~~~f~~~i~P~~~~i~~~~~~ihGIt~~~l~~~p~f~ev~~~f~~fi~~~~~~ 93 (245) +|||+++|....|+-|+. -.. ..+ +..|+-. ..+. ...+...| +....+ .+.. T Consensus 2 ~e~~~~~p~~~~~vG~~~---~~~-~~~--~~~~~~~---~~~~---------~~~~~~~~---~~~~~~------~~~~ 54 (540) T 3m8r_A 2 LEEAPWPPPEGAFVGFVL---SRK-EPM--WADLLAL---AAAR---------GGRVHRAP---EPYKAL------RDLK 54 (540) T ss_dssp CEEECSSCCTTCEEEEEE---SSS-CTT--TCCEEEE---EEEE---------TTEEEECS---SHHHHG------GGCS T ss_pred CCCCCCCCCCCEEEEEEE---EEC-CCC--EEEEEEC---CCCC---------CCCHHHHH---HHHHHH------HHHH T ss_conf 887899988841899999---855-887--3786401---2234---------45322225---799863------4346 Q ss_pred EEEECCCCCCCEEEECHHCCCCCCCCCCHHCCCHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH Q ss_conf 23102322431121000001122221000011000000017764222378999718754555666402699999999999 Q gi|254780818|r 94 WIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 (245) Q Consensus 94 lVaHNa~FD~~fL~~el~r~~~~~~~~~~~iDTl~lar~~~p~~~~~L~~l~~~~~i~~~~r~~H~Al~Da~~~a~v~~~ 173 (245) -+.||..||+.+|. .++|.... ++.||+.+|..+-|+ +++|++|+++|.=. ..--|-.||.+|.++|.. T Consensus 55 ~~~~~~~~d~~~l~---~~~Gi~~~---~~~Dtmlaa~ll~~~-~~~l~~la~~~l~~----~~~YA~~Da~~t~~L~~~ 123 (540) T 3m8r_A 55 EARGLLAKDLSVLA---LREGLGLP---PGDDPMLLAYLLDPS-NTTPEGVARRYGGE----WTEEAGERAALSERLFAN 123 (540) T ss_dssp CBCSTTHHHHHHHH---HHTTCCCC---BCCCHHHHHHHHCTT-CCCHHHHHHHHTCC----CCSCHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHH---HHCCCCCC---CCCHHHHHHHHHCCC-CCCHHHHHHHHCCC----CHHHHHHHHHHHHHHHHH T ss_conf 77756888799999---96799889---977189999983998-99869999997752----158899999999999999 Q ss_pred HHH Q ss_conf 973 Q gi|254780818|r 174 MMV 176 (245) Q Consensus 174 ll~ 176 (245) |.. T Consensus 124 l~~ 126 (540) T 3m8r_A 124 LWG 126 (540) T ss_dssp HHH T ss_pred HHH T ss_conf 999 No 35 >3nae_A DNA polymerase, GP43; RB69 DNA polymerase; HET: DNA G35 DOC DTP; 2.00A {Enterobacteria phage RB69} PDB: 3lzi_A* 3lzj_A* 1ig9_A* 1q9x_A* 2atq_A* 2dy4_A* 2oyq_A* 2ozm_A* 2ozs_A* 2p5g_A* 2p5o_A* 1q9y_A* 3l8b_A* 3lds_A* 3cq8_A* 1ih7_A* 1clq_A* 1waf_A* 1waj_A* 3cfr_A* ... Probab=96.54 E-value=0.0014 Score=40.93 Aligned_cols=164 Identities=18% Similarity=0.262 Sum_probs=82.8 Q ss_pred CCCCEEEEECCCC---CC-CCC--CCEEEEEEEEEEECCEECCCEEEEEE---CCCCCCCCHH----HEEEC--CC---C Q ss_conf 7775899984678---88-888--88899999999999988031379898---5888228865----72420--21---0 Q gi|254780818|r 5 NKMRKIVFDIETT---GL-DSK--NDRIIEIGAVELLDYSKTNRTFQVFL---CPNGRKNSPE----ALKLH--GI---T 66 (245) Q Consensus 5 ~~mr~iv~D~ETT---Gl-~~~--~d~Iieigav~i~~~~~~~~~f~~~i---~P~~~~i~~~----~~~ih--GI---t 66 (245) .+.|.+.||+||+ |+ +|. .|.|++|+++--.+ +.+..+. .|.. ..... ..... |. . T Consensus 106 ~~l~i~sfDIE~~s~~gFP~p~~~~d~Ii~Is~~~~~~-----~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 179 (903) T 3nae_A 106 TKIRVANFDIEVTSPDGFPEPSQAKHPIDAITHYDSID-----DRFYVFDLLNSPYG-NVEEWSIEIAAKLQEQGGDEVP 179 (903) T ss_dssp GGSCEEEEEEEECCTTSSCCTTTCCSCEEEEEEEETTT-----TEEEEEEECEETTE-ECCCCCHHHHHSCGGGTCCCCC T ss_pred CCCCEEEEEEEECCCCCCCCCCCCCCCEEEEEEEECCC-----CEEEEEECCCCCCC-CCCCCCCCCCCCCCCCCCCCCC T ss_conf 63518999976788999998344789489999996379-----82899842576766-5211023445432223445565 Q ss_pred -----CCCCCCCCCCCHHHHHHHHHHHCCC-CEEEEECC-CCCCCEEEECHHCCC-------CCC--------------- Q ss_conf -----1232248521002344777530023-20231023-224311210000011-------222--------------- Q gi|254780818|r 67 -----DEFLKDKPSFSSIFSEFWDFFNEQN-AEWIAHNA-KFDVGFINAELQRIN-------KDP--------------- 117 (245) Q Consensus 67 -----~~~l~~~p~f~ev~~~f~~fi~~~~-~~lVaHNa-~FD~~fL~~el~r~~-------~~~--------------- 117 (245) +-.+...++-.+.+.+|++++...+ .+++|||. .||+.+|..-+.+.+ +.+ T Consensus 180 ~~~~~~v~~~~~~sE~eLL~~F~~~i~~~dPDII~GyN~~~FD~pYL~~R~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 259 (903) T 3nae_A 180 SEIIDKIIYMPFDNEKELLMEYLNFWQQKTPVILTGWNVESFAIPYVYNRIKNIFGESTAKRLSPHRKTRVKVIENMYGS 259 (903) T ss_dssp HHHHTTEEEEEESSHHHHHHHHHHHHHHTCCSEEECSSTTTTHHHHHHHHHHHHHCHHHHGGGSTTSCEEEEEEEETTEE T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCC T ss_conf 33468628996599999999999862505998999689877679999999998557632211254567652100002355 Q ss_pred -----CCCCHHCCCHHCCCCC--CCCCCCCHHHHHHHH-CCCCCCC--C------------CCCCHHHHHHHHHHHHHH Q ss_conf -----2100001100000001--776422237899971-8754555--6------------664026999999999999 Q gi|254780818|r 118 -----LDPSRIIDTLSIARRK--HPSSRNDLNSLCKRY-GITISHR--S------------KHGALLDSHLLSDVYIKM 174 (245) Q Consensus 118 -----~~~~~~iDTl~lar~~--~p~~~~~L~~l~~~~-~i~~~~r--~------------~H~Al~Da~~~a~v~~~l 174 (245) +....++|.+.+.+.. ....+++|+.++..+ |...... . .--.+.||.++.+++..+ T Consensus 260 ~~~~~i~G~~~lD~~~l~~k~~~~~~~sy~Ld~va~~~Lg~~k~~~~~~~~~~~~~~~~~~~~Y~~~D~~L~~~L~~kl 338 (903) T 3nae_A 260 REIITLFGISVLDYIDLYKKFSFTNQPSYSLDYISEFELNVGKLKYDGPISKLRESNHQRYISYNIIAVYRVLQIDAKR 338 (903) T ss_dssp EEEEEETTCEECCHHHHHHHHSCCCCSCCCHHHHHHHHHCCCCCCCSSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred CEEEEEECEEEEEHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 3146660436752899999987602011239999999728887644210323304678889887432799999999998 No 36 >1vk0_A Hypothetical protein; homohexamer, AT5G06450, structural genomics, protein structure initiative, center for eukaryotic structural genomics; 2.10A {Arabidopsis thaliana} SCOP: c.55.3.5 PDB: 2q3s_A Probab=95.91 E-value=0.0026 Score=39.26 Aligned_cols=90 Identities=11% Similarity=0.208 Sum_probs=61.0 Q ss_pred HHHHHHHHHCCCCEEEEECCCCCCCEEEECHHCCCCCCCCCCHHCCCHHCCCCCCCC---CCCCHHHHHHHH-CCCCCC- Q ss_conf 344777530023202310232243112100000112222100001100000001776---422237899971-875455- Q gi|254780818|r 80 FSEFWDFFNEQNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPS---SRNDLNSLCKRY-GITISH- 154 (245) Q Consensus 80 ~~~f~~fi~~~~~~lVaHNa~FD~~fL~~el~r~~~~~~~~~~~iDTl~lar~~~p~---~~~~L~~l~~~~-~i~~~~- 154 (245) .+.+.+|+....-+.||||+..|+..|.+. +|.. ...++|+-.++...... .+.+|..|++.+ |+.+.. T Consensus 97 ~~~L~~~L~~~~i~KVG~~i~~D~~~L~~~---~gi~---~~~~vDl~~~a~~~~~~~~~~~~~l~~L~~~~lg~~l~K~ 170 (206) T 1vk0_A 97 LKDLYRFFASKFVTFVGVQIEEDLDLLREN---HGLV---IRNAINVGKLAAEARGTLVLEFLGTRELAHRVLWSDLGQL 170 (206) T ss_dssp GHHHHHHHTCSSSEEEESSCHHHHHHHHHH---HCCC---CSSEEEHHHHHHHHHTCGGGGGCCHHHHHHHHHCCCCHHH T ss_pred HHHHHHHHCCCCEEEEEECHHHHHHHHHHH---CCCC---CCCEEECHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCC T ss_conf 799999965998159996269889998512---4976---5535525699998732544131009999999769867867 Q ss_pred -------------CCCCCCHHHHHHHHHHHHHHH Q ss_conf -------------566640269999999999997 Q gi|254780818|r 155 -------------RSKHGALLDSHLLSDVYIKMM 175 (245) Q Consensus 155 -------------r~~H~Al~Da~~~a~v~~~ll 175 (245) .+-+-|-.||.++-++|.+|. T Consensus 171 ~~~~s~W~~pLs~~Qi~YAA~DA~~~~~iy~~L~ 204 (206) T 1vk0_A 171 DSIEAKWEKAGPEEQLEAAAIEGWLIVNVWDQLS 204 (206) T ss_dssp HHHHHTGGGSCHHHHHHHHHHHHHHHHHHHHHHH T ss_pred CEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH T ss_conf 6521487688999999999998999999999985 No 37 >3ikm_A DNA polymerase subunit gamma-1; human mitochondrial DNA polymerase, disease mutation, DNA replication, DNA-binding, DNA-directed DNA polymerase; HET: DNA; 3.24A {Homo sapiens} Probab=93.96 E-value=0.014 Score=34.73 Aligned_cols=82 Identities=22% Similarity=0.290 Sum_probs=51.3 Q ss_pred CCCEEEEECCCCCCCEEEECHHCCCCCCCCCCHHCCCHHCC----------CCCC------------------------- Q ss_conf 23202310232243112100000112222100001100000----------0017------------------------- Q gi|254780818|r 90 QNAEWIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIA----------RRKH------------------------- 134 (245) Q Consensus 90 ~~~~lVaHNa~FD~~fL~~el~r~~~~~~~~~~~iDTl~la----------r~~~------------------------- 134 (245) +..++||||++||...+..+.. +.. ...+++|||.|- |.+| T Consensus 193 ~~rlVVGHNVsyDRaRi~EeY~---l~~-s~~rFlDTMSLHvavsGm~S~QR~~w~~~kk~~~~~~~~~~~~~~~~~~~~ 268 (1172) T 3ikm_A 193 QEQLVVGHNVSFDRAHIREQYL---IQG-SRMRFLDTMSMHMAISGLSSFQRSLWIAAKQGKHKVQPPTKQGQKSQRKAR 268 (1172) T ss_dssp SCCCCBCBCSSSSTTGGGTSSC---SSC-CCCCCCBTTHHHHHHSCCCHHHHHHHHHHHHC------------------- T ss_pred CCCEEEECCCCCCHHHHHHHHH---HCC-CCCEEEEHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH T ss_conf 7637985675510888888873---145-676322103465540256624268998742313220012333332133321 Q ss_pred ----------CC-C---CCCHHHHHHHHC--CCCCC--CCC-----------------CCCHHHHHHHHHHHHHHH Q ss_conf ----------76-4---222378999718--75455--566-----------------640269999999999997 Q gi|254780818|r 135 ----------PS-S---RNDLNSLCKRYG--ITISH--RSK-----------------HGALLDSHLLSDVYIKMM 175 (245) Q Consensus 135 ----------p~-~---~~~L~~l~~~~~--i~~~~--r~~-----------------H~Al~Da~~~a~v~~~ll 175 (245) -. . .|||.++++.|- ++++. |+. --+..|+.+|.+||..+. T Consensus 269 ~~~~~~~~~W~~~sS~~~NSL~dV~~lhcg~~~ldK~~Rd~Fv~~~~~dI~~~fq~Lm~YCA~DV~aT~~V~~kl~ 344 (1172) T 3ikm_A 269 RGPAISSWDWLDISSVNSNSLAEVHRLYVGGPPLEKEPRELFVKGTMKDIRENFQDLMQYCAQDVWATHEVFQQQL 344 (1172) T ss_dssp -------CCCCCCCCTTSHHHHHHHTCSSCSCS--SCSSSSTTTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred CCCCCCCCCHHHCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 2652234330002344536499999974799877877888885299999999899999999988999999999877 No 38 >1noy_A Protein (DNA polymerase (E.C.2.7.7.7)); exonuclease, DNA-binding, complex (nucleotidyltransferase/DNA); HET: DNA; 2.20A {Enterobacteria phage T4} SCOP: c.55.3.5 PDB: 1noz_A* Probab=93.52 E-value=0.065 Score=30.56 Aligned_cols=165 Identities=18% Similarity=0.167 Sum_probs=80.2 Q ss_pred CCCCEEEEECCCCCCC---C--CCCEEEEEEEEEEECCEECCCEEEEEECC---CCC--CCCHHHEE------ECCCC-- Q ss_conf 7775899984678888---8--88889999999999998803137989858---882--28865724------20210-- Q gi|254780818|r 5 NKMRKIVFDIETTGLD---S--KNDRIIEIGAVELLDYSKTNRTFQVFLCP---NGR--KNSPEALK------LHGIT-- 66 (245) Q Consensus 5 ~~mr~iv~D~ETTGl~---~--~~d~Iieigav~i~~~~~~~~~f~~~i~P---~~~--~i~~~~~~------ihGIt-- 66 (245) .+++...+|+||++-+ | ..+.|++|++..-.+. .+.++.-. ... +.+..... ..++. T Consensus 104 ~~i~i~~~die~~~~~~~~~~~~~~~i~~I~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (388) T 1noy_A 104 KFVRVANCDIEVTGDKFPDPMKAEYEIDAITHYDSIDD-----RFYVFDLLNSMYGSVSKWDAKLAAKLDCEGGDEVPQE 178 (388) T ss_dssp GGCCEEEEEEEECCSSCCCTTTCCSCEEEEEEEETTTT-----EEEEEEECCCSSCCCCCCCHHHHHSCGGGTCCCCCHH T ss_pred CCCEEEEEEEEECCCCCCCCCCCCCCCEEEEEEECCCC-----EEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 33079888787436676786310021004788864798-----5999985154456666655555543223345565545 Q ss_pred -CCC--CCCCCCCCHHHHHHHHHHHCCC-CEEEEECC-CCCCCEEEECHHCCCCCC------------------------ Q ss_conf -123--2248521002344777530023-20231023-224311210000011222------------------------ Q gi|254780818|r 67 -DEF--LKDKPSFSSIFSEFWDFFNEQN-AEWIAHNA-KFDVGFINAELQRINKDP------------------------ 117 (245) Q Consensus 67 -~~~--l~~~p~f~ev~~~f~~fi~~~~-~~lVaHNa-~FD~~fL~~el~r~~~~~------------------------ 117 (245) .+. +....+-.+.+..|++++...+ .+++|||. .||+..|-.-+.+.+... T Consensus 179 ~~d~v~~~~~~~E~~LL~~F~~~i~~~dPDiI~G~N~~~FD~pYL~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (388) T 1noy_A 179 ILDRVIYMPFDNERDMLMEYINLWEQKRPAIFTGWNIEGFDVPYIMNRVKMILGERSMKRFSPIGRVKSKLLQNMYGSKE 258 (388) T ss_dssp HHTTEEEEEESCHHHHHHHHHHHHHHSCCSEEECSSTTTTHHHHHHHHHHHHHHHHHHGGGSTTSCEEEEECCGGGCSCE T ss_pred CCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCE T ss_conf 67886999839999999999999987388889870678851789999999852642101137567664225540256522 Q ss_pred ---CCCCHHCCCHHCCCCCC--CCCCCCHHHHHHHHCCCCC---CCCC------------CCCHHHHHHHHHHHHHH Q ss_conf ---21000011000000017--7642223789997187545---5566------------64026999999999999 Q gi|254780818|r 118 ---LDPSRIIDTLSIARRKH--PSSRNDLNSLCKRYGITIS---HRSK------------HGALLDSHLLSDVYIKM 174 (245) Q Consensus 118 ---~~~~~~iDTl~lar~~~--p~~~~~L~~l~~~~~i~~~---~r~~------------H~Al~Da~~~a~v~~~l 174 (245) ......+|.+.+.+... ...+++|+..+..+.-... .... .-.+-||.++.+++.+| T Consensus 259 ~~~~~g~~~~d~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~~kli~Yn~~D~~l~~~L~~kl 335 (388) T 1noy_A 259 IYSIDGVSILDYLDLYKKFAFTNLPSFSLESVAQHETKKGKLPYDGPINKLRETNHQRYISYNIIDVESVQAIDKIR 335 (388) T ss_dssp EEEETTSEECCHHHHHHHHTCCCCSCCSHHHHHHHHHSCCCCCCSSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred EEEECCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH T ss_conf 56421421678999999763034232028889998668876672566666654189999999999999999999997 No 39 >1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition, helix-coil dynamics, inhibitor design, complex (polymerase/inhibitor); 2.30A {Thermus aquaticus} SCOP: a.60.7.1 c.120.1.2 c.55.3.5 e.8.1.1 PDB: 1cmw_A 1tau_A* 1taq_A* Probab=92.29 E-value=0.078 Score=30.08 Aligned_cols=72 Identities=15% Similarity=0.079 Sum_probs=53.1 Q ss_pred EEEECCCCCCCEEEECHHCCCCCCCCCCHHCCCHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH Q ss_conf 23102322431121000001122221000011000000017764222378999718754555666402699999999999 Q gi|254780818|r 94 WIAHNAKFDVGFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDSHLLSDVYIK 173 (245) Q Consensus 94 lVaHNa~FD~~fL~~el~r~~~~~~~~~~~iDTl~lar~~~p~~~~~L~~l~~~~~i~~~~r~~H~Al~Da~~~a~v~~~ 173 (245) -+.||..||+.+|. .+.|... ..+.||+.++...-|+ +++++.+.++|.-.. ..-|..||.+|.++|.. T Consensus 347 k~~~~lk~d~~vl~---~~~gi~~---~~~~DtmiaayLl~p~-~~~~~~l~~~~~~e~----~eYa~~Da~~t~~L~~~ 415 (832) T 1bgx_T 347 EARGLLAKDLSVLA---LREGLGL---PPGDDPMLLAYLLDPS-NTTPEGVARRYGGEW----TEEAGERAALSERLFAN 415 (832) T ss_dssp SBCBTTHHHHHHHH---HHHTCCC---CBCCCHHHHHHHHCTT-CCSTTHHHHHHSCCC----CSSHHHHHHHHHHHHHH T ss_pred HHHCCCCCCHHHHH---HHHHHCC---CHHHHHHHHHHHHCCC-CCCHHHHHHHHCCCC----HHHHHHHHHHHHHHHHH T ss_conf 86244300399986---4101124---4002599999986477-868067777625441----57799999999999999 Q ss_pred HHH Q ss_conf 973 Q gi|254780818|r 174 MMV 176 (245) Q Consensus 174 ll~ 176 (245) |.. T Consensus 416 L~~ 418 (832) T 1bgx_T 416 LWG 418 (832) T ss_dssp HHH T ss_pred HHH T ss_conf 999 No 40 >2dfa_A Hypothetical UPF0271 protein TTHB195; lactam utilization protein, structural genomics, NPPSFA; 1.90A {Thermus thermophilus HB8} SCOP: c.6.2.5 Probab=32.72 E-value=18 Score=15.26 Aligned_cols=38 Identities=21% Similarity=0.248 Sum_probs=26.8 Q ss_pred CCCHHHHHHHHCCCCCCCCCCCCHHHHH----HHHHHHHHHH Q ss_conf 2223789997187545556664026999----9999999997 Q gi|254780818|r 138 RNDLNSLCKRYGITISHRSKHGALLDSH----LLSDVYIKMM 175 (245) Q Consensus 138 ~~~L~~l~~~~~i~~~~r~~H~Al~Da~----~~a~v~~~ll 175 (245) -..|..+|+..|..+.|=+.|+||+-.- .+|+.+.+.+ T Consensus 91 i~al~~~a~~~g~~l~hVKpHGALYn~~~~d~~la~ai~~ai 132 (250) T 2dfa_A 91 IGALSAFLKAEGLPLHHVKPHGALYLKACRDRETARAIALAV 132 (250) T ss_dssp HHHHHHHHHHTTCCCCCBCCCHHHHHHHHHCHHHHHHHHHHH T ss_pred HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH T ss_conf 999999999819975220502789999986599999999999 No 41 >1v6t_A Hypothetical UPF0271 protein PH0986; TIM-barrel, lactam utilization protein, structural genomics; 1.70A {Pyrococcus horikoshii OT3} SCOP: c.6.2.5 Probab=28.22 E-value=18 Score=15.33 Aligned_cols=38 Identities=26% Similarity=0.447 Sum_probs=27.0 Q ss_pred CCCHHHHHHHHCCCCCCCCCCCCHHHHHH----HHHHHHHHH Q ss_conf 22237899971875455566640269999----999999997 Q gi|254780818|r 138 RNDLNSLCKRYGITISHRSKHGALLDSHL----LSDVYIKMM 175 (245) Q Consensus 138 ~~~L~~l~~~~~i~~~~r~~H~Al~Da~~----~a~v~~~ll 175 (245) -..|..+|+..|..+.|=+.|+||+-.-+ +|+.+...+ T Consensus 91 i~al~~~a~~~g~~l~hVKPHGALYN~~~~D~~lA~ai~~ai 132 (255) T 1v6t_A 91 VGALYAFAKAEGLELQHVKPHGALYNAMVKEEDLARAVIEGI 132 (255) T ss_dssp HHHHHHHHHHTTCCEEEECCCHHHHHHHHHCHHHHHHHHHHH T ss_pred HHHHHHHHHHCCCEEEEECCCHHHHHHHHCCHHHHHHHHHHH T ss_conf 999999999839902442312788888862999999999999 No 42 >2x5e_A UPF0271 protein PA4511; unknown function; HET: CIT; 2.30A {Pseudomonas aeruginosa} Probab=28.05 E-value=21 Score=14.92 Aligned_cols=85 Identities=18% Similarity=0.232 Sum_probs=43.5 Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCCC-CEEEECHHCCCCCCCCCCHHCCCHHCCCCCCCCCCCCHHHHHHHHCCCCCCCC Q ss_conf 02344777530023202310232243-11210000011222210000110000000177642223789997187545556 Q gi|254780818|r 78 SIFSEFWDFFNEQNAEWIAHNAKFDV-GFINAELQRINKDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRS 156 (245) Q Consensus 78 ev~~~f~~fi~~~~~~lVaHNa~FD~-~fL~~el~r~~~~~~~~~~~iDTl~lar~~~p~~~~~L~~l~~~~~i~~~~r~ 156 (245) ++..+.+......|-.+=||=.==|. +| .|-.++. +...+.+.+. -|-..|..+|+..|..+.|=+ T Consensus 49 ~~m~~tv~lA~~~~V~IGAHPsypD~~gF-----GRr~~~~-s~~el~~~v~-------~Qi~al~~~a~~~g~~l~hVK 115 (252) T 2x5e_A 49 LTMRRAVELAVRHGVSIGAHPAYPDLSGF-----GRRSLAC-SAEEVHAMVL-------YQIGALDAFCRSLGTQVAYVK 115 (252) T ss_dssp HHHHHHHHHHHHTTCEEEEECCCSCTTTT-----TCSCCCC-CHHHHHHHHH-------HHHHHHHHHHHHTTCCCCEEC T ss_pred HHHHHHHHHHHHCCCEEECCCCCCCCCCC-----CCCCCCC-CHHHHHHHHH-------HHHHHHHHHHHHCCCEEEEEC T ss_conf 99999999999859978368998765789-----9998899-9999999999-------999999999998499103653 Q ss_pred CCCCHHHH----HHHHHHHHHHH Q ss_conf 66402699----99999999997 Q gi|254780818|r 157 KHGALLDS----HLLSDVYIKMM 175 (245) Q Consensus 157 ~H~Al~Da----~~~a~v~~~ll 175 (245) .|+||+-. ..+|+.+.+.+ T Consensus 116 pHGALYn~~~~D~~lA~ai~~ai 138 (252) T 2x5e_A 116 PHGALYNDLVGDDELLRAVLDAC 138 (252) T ss_dssp CCHHHHHHHTTCHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHHHHHHHHHHH T ss_conf 13999999986199999999999 No 43 >1xw8_A UPF0271 protein YBGL; NESG, northeast structural genomics consortium, structural genomics, protein structure initiative, PSI, X-RAY; 2.00A {Escherichia coli} SCOP: c.6.2.5 Probab=25.19 E-value=22 Score=14.78 Aligned_cols=39 Identities=21% Similarity=0.365 Sum_probs=27.2 Q ss_pred CCCCHHHHHHHHCCCCCCCCCCCCHHHH----HHHHHHHHHHH Q ss_conf 4222378999718754555666402699----99999999997 Q gi|254780818|r 137 SRNDLNSLCKRYGITISHRSKHGALLDS----HLLSDVYIKMM 175 (245) Q Consensus 137 ~~~~L~~l~~~~~i~~~~r~~H~Al~Da----~~~a~v~~~ll 175 (245) |-..|..+|+..|..+.+=+.|+||+-. .-+|+.+.+.+ T Consensus 85 Qi~al~~~a~~~g~~l~hVKpHGALYn~a~~d~~lA~~i~~ai 127 (252) T 1xw8_A 85 QIGALATIARAQGGVMRHVKPHGMLYNQAAKEAQLADAIARAV 127 (252) T ss_dssp HHHHHHHHHHHTTCCEEEECCCHHHHHHHTTCHHHHHHHHHHH T ss_pred HHHHHHHHHHHCCCCCCEECCCHHHHHHHHCCHHHHHHHHHHH T ss_conf 9999999999849963102503699987513799999999999 No 44 >3dao_A Putative phosphatse; structural genomics, joint center for S genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE 1PE CIT; 1.80A {Eubacterium rectale} Probab=20.32 E-value=37 Score=13.34 Aligned_cols=24 Identities=17% Similarity=0.160 Sum_probs=19.0 Q ss_pred CCCCCCCCEEEEECCCCCCCCCCC Q ss_conf 986677758999846788888888 Q gi|254780818|r 1 MIRKNKMRKIVFDIETTGLDSKND 24 (245) Q Consensus 1 ~~~~~~mr~iv~D~ETTGl~~~~d 24 (245) |.+++|+|.|++|+-=|=+++.+. T Consensus 15 ~~~~~MiKli~~DlDGTLl~~~~~ 38 (283) T 3dao_A 15 LYFQGMIKLIATDIDGTLVKDGSL 38 (283) T ss_dssp ----CCCCEEEECCBTTTBSTTCS T ss_pred HHHHCCEEEEEEECCCCCCCCCCC T ss_conf 866282089999768777689998 Done!