RPSBLAST alignment for GI: 254780818 and conserved domain: TIGR01298

>gnl|CDD|130365 TIGR01298, RNaseT, ribonuclease T. in gamma-subdivision Proteobacteria such as Escherichia coli and Xylella fastidiosa. Ribonuclease T is homologous to the DNA polymerase III alpha chain. It can liberate AMP from the common C-C-A terminus of uncharged tRNA. It appears also to be involved in RNA maturation. It also acts as a 3' to 5' single-strand DNA-specific exonuclease; it is distinctive for its ability to remove residues near a double-stranded stem. Ribonuclease T is a high copy suppressor in E. coli of a uv-repair defect caused by deletion of three other single-stranded DNA exonucleases. Length = 200
 Score = 60.6 bits (147), Expect = 4e-10
 Identities = 50/171 (29%), Positives = 77/171 (45%), Gaps = 19/171 (11%)

Query: 10  IVFDIETTGLDSKNDRIIEIGAVEL-LD-----YSKTNRTFQVFLCPNGRKNSPEALKLH 63
           +V D+ET G ++K D ++EI A+ L +D     +  T   F V     G    PEAL+  
Sbjct: 11  VVVDVETGGFNAKTDALLEIAAITLKMDEQGWLFPDTTLHFHVEPFE-GANIQPEALEFT 69

Query: 64  GIT-DEFLK----DKPSFSSIFSEFWDFFNE---QNAEWIAHNAKFDVGFINAELQRIN- 114
           GI  D  L+    +  +   IF            Q A  + HNA FD+GF+NA ++R + 
Sbjct: 70  GIDLDHPLRGAVSEYEALHEIFKVVRKAMKASGCQRAILVGHNANFDLGFLNAAVERTSL 129

Query: 115 -KDPLDPSRIIDTLSIARRKHPSSRNDLNSLCKRYGITISHRSKHGALLDS 164
            ++P  P    DT ++A   +   +  L   C+  G        H AL D+
Sbjct: 130 KRNPFHPFSTFDTATLAGLAY--GQTVLAKACQAAGXDFDSTQAHSALYDT 178