HHsearch alignment for GI: 254780820 and conserved domain: COG0616
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion].
Probab=95.35 E-value=0.18 Score=32.03 Aligned_cols=89 Identities=22% Similarity=0.326 Sum_probs=56.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHHC-C-CEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCC-CEEEE
Q ss_conf 5357789999999999998628-9-6899976888776521246777788999999998629988998567642-01111
Q gi|254780820|r 134 GSIGIAAGEAIVKSCERAIAEK-C-PLVMFTASGGARMQEGILSLMQLPRTTIAINMLKDAGLPYIVVLTNPTT-GGVTA 210 (284)
Q Consensus 134 GSmG~~~geki~~a~e~A~~~~-~-PlI~~~~SGGaRMqEG~~sL~qMakt~~a~~~l~~~~lP~I~vl~~pt~-GGv~A 210 (284)
T Consensus 75 ~~~~~~~~~~~~~~l~~~~~~~~vk~vvL~inSPG----G~v~as~~---i~~~l~~l~~~~-PV~v~v~~~AASGGY~I 146 (317)
T COG0616 75 GPLRFIGGDDIEEILRAARADPSVKAVVLRINSPG----GSVVASEL---IARALKRLRAKK-PVVVSVGGYAASGGYYI 146 (317)
T ss_pred CCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCC----CCHHHHHH---HHHHHHHHHHCC-CEEEEECCCCCCHHHHH
T ss_conf 76344667779999999850899873899998949----84689999---999999875329-89999887320289999
Q ss_pred EECCCCCEEEEECCCEEECCCH
Q ss_conf 2014685255531421102327
Q gi|254780820|r 211 SYAMLGDIHLAEPGAEIGFAGR 232 (284)
Q Consensus 211 S~a~lgDiiiaep~a~igFaG~ 232 (284)
T Consensus 147 --A~aAd~I~a~p~si~GSIGV 166 (317)
T COG0616 147 --ALAADKIVADPSSITGSIGV 166 (317)
T ss_pred --HHCCCEEEECCCCCCCCCCE
T ss_conf --84078798779860213501