HHsearch alignment for GI: 254780820 and conserved domain: COG1030
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones].
Probab=95.59 E-value=0.1 Score=33.89 Aligned_cols=137 Identities=22% Similarity=0.261 Sum_probs=90.3
Q ss_pred ECEEEEEEEEECHHHCCCCCHHHHHHHHHHHHHHHHHC-CCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCE
Q ss_conf 04149999983303185357789999999999998628-96899976888776521246777788999999998629988
Q gi|254780820|r 118 RDFKLVAVVHEFSFIGGSIGIAAGEAIVKSCERAIAEK-CPLVMFTASGGARMQEGILSLMQLPRTTIAINMLKDAGLPY 196 (284)
Q Consensus 118 ~G~~vvv~~~df~F~GGSmG~~~geki~~a~e~A~~~~-~PlI~~~~SGGaRMqEG~~sL~qMakt~~a~~~l~~~~lP~ 196 (284)
T Consensus 24 ~~~~v~vi~i~-----g~I~~~s~~~l~r~l~~A~~~~a~~vvl~ldTPGG----l~~sm~~iv~------~i~~s~vPV 88 (436)
T COG1030 24 AEKKVYVIEID-----GAIDPASADYLQRALQSAEEENAAAVVLELDTPGG----LLDSMRQIVR------AILNSPVPV 88 (436)
T ss_pred CCCEEEEEEEC-----CCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCC----HHHHHHHHHH------HHHCCCCCE
T ss_conf 67718999925-----74277799999999999985798479999608972----6799999999------987599977
Q ss_pred EEEECCCCCCEEEEEE----CCCCCEEEEECCCEEECCCHHHHHHHHCCCCC----------------------------
Q ss_conf 9985676420111120----14685255531421102327887876367788----------------------------
Q gi|254780820|r 197 IVVLTNPTTGGVTASY----AMLGDIHLAEPGAEIGFAGRRVIEQTVREKLP---------------------------- 244 (284)
Q Consensus 197 I~vl~~pt~GGv~AS~----a~lgDiiiaep~a~igFaG~rVi~~t~~~~lp---------------------------- 244 (284)
T Consensus 89 ~~yv-~p~-ga~AaSAGtyI~m~~hiaaMAPgT~iGaa~Pi~~~g~~~~~~~~~n~~~ay~~~~A~~~gRN~~~ae~~v~ 166 (436)
T COG1030 89 IGYV-VPD-GARAASAGTYILMATHIAAMAPGTNIGAATPIAGGGTSAKEANTTNAAVAYIRSLAEERGRNPTWAERFVT 166 (436)
T ss_pred EEEE-CCC-CCCHHCHHHHHHHHCCHHHHCCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 9999-489-85110403279885676551798743546502479988550143789999999999983998699999864
Q ss_pred -CCCHHHHHHHHCCCCCEEEC-HHHHHHH
Q ss_conf -72021599996898353735-8999999
Q gi|254780820|r 245 -DGFQRSEYLVEHGMIDRIVH-RHDIPEV 271 (284)
Q Consensus 245 -~~fqtae~l~~~G~iD~iv~-r~~l~~~ 271 (284)
T Consensus 167 ~~~~l~a~eA~~~~vid~iA~~~~ell~~ 195 (436)
T COG1030 167 ENLSLTAEEALRQGVIDLIARDLNELLKK 195 (436)
T ss_pred HCCCCCHHHHHHCCCCCCCCCCHHHHHHH
T ss_conf 21577866798559400355878999987