HHsearch alignment for GI: 254780820 and conserved domain: COG1594

>COG1594 RPB9 DNA-directed RNA polymerase, subunit M/Transcription elongation factor TFIIS [Transcription].

Probab=91.61  E-value=0.047  Score=36.38  Aligned_cols=41  Identities=17%  Similarity=0.403  Sum_probs=30.8

Q ss_pred             EECCCCCCEEEHHHH-HHHCCCCCCCCCCEECCHHHHHHHHC
Q ss_conf             056676872217889-86338388998962437999999845
Q gi|254780820|r   27 VKCPETGAMVYHKDL-KENQWVISSSDFHMKIPAKERLKFLF   67 (284)
Q Consensus        27 ~kCp~C~~~i~~~~l-~~n~~VCp~C~~H~rl~areRi~~l~   67 (284)
T Consensus         3 ~FCp~Cgsll~p~~~~~~~~l~C~~Cgye~~~~~~~~~~~~~   44 (113)
T COG1594           3 RFCPKCGSLLYPKKDDEGGKLVCRKCGYEEEASNKKVYRYSV   44 (113)
T ss_pred             CCCCCCCCEEEEEECCCCCEEECCCCCCCCCCCCCCEEEEEE
T ss_conf             226876685678574888478888878600036442267787