HHsearch alignment for GI: 254780820 and conserved domain: PRK05580

>PRK05580 primosome assembly protein PriA; Validated.
Probab=92.36  E-value=0.44  Score=29.19  Aligned_cols=155  Identities=17%  Similarity=0.186  Sum_probs=65.5

Q ss_pred             EECCCCCCEE-EHHHHHHHCCCCCCCCCCEECCH----------------HHHHHHHC----CCCCCCCCCCCCCCCHHC
Q ss_conf             0566768722-17889863383889989624379----------------99999845----565420133456870201
Q gi|254780820|r   27 VKCPETGAMV-YHKDLKENQWVISSSDFHMKIPA----------------KERLKFLF----DNAKYCLLDQPQVCQDPL   85 (284)
Q Consensus        27 ~kCp~C~~~i-~~~~l~~n~~VCp~C~~H~rl~a----------------reRi~~l~----D~gsf~Ei~~~~~~~DPL   85 (284)
T Consensus       414 ~~C~~C~~~L~~h~~--~~~l~Ch~Cg~~~~~~~~Cp~Cgs~~l~~~g~Gteri~eel~~~FP~~~i~r~d~-----d~~  486 (699)
T PRK05580        414 ARCPHCDGPLTLHRA--GRRLRCHHCGYQEPIPRACPECGSTDLRAVGVGTERTEEELARLFPGARVLRIDR-----DTT  486 (699)
T ss_pred             EECCCCCCEEEECCC--CCCEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECC-----CCC
T ss_conf             565678986342068--9833226468836575546567997524111685999999997789998899847-----556


Q ss_pred             CCCCCCCHHHHHHHHHHHCCCCCCEEEEEEEEE-CE----EEEEEEEECHHHCCCCCHHHHHHHHHHH----HHHHHHCC
Q ss_conf             867642035667766642166771699987870-41----4999998330318535778999999999----99986289
Q gi|254780820|r   86 KFRDNKKYIDRLKENRSKTGLIDSIVSAVGNVR-DF----KLVAVVHEFSFIGGSIGIAAGEAIVKSC----ERAIAEKC  156 (284)
Q Consensus        86 ~F~d~k~Y~drl~~a~~kTg~~davv~G~G~I~-G~----~vvv~~~df~F~GGSmG~~~geki~~a~----e~A~~~~~  156 (284)
T Consensus       487 ~--~~~~~~~~~~~~~~--~-~~dIlvGTqmiakG~df~~v~lv~vldaD~~l~~pd~ra~E~~~qll~qvagragr~~~  561 (699)
T PRK05580        487 R--RKGALEQLLEDFAR--G-EADILVGTQMLAKGHDFPNVTLVGVLDADTGLFSPDFRAAERTFQLLTQVAGRAGRAEK  561 (699)
T ss_pred             C--CCCCHHHHHHHHHC--C-CCCEEECCCCCCCCCCCCCEEEEEEECHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCC
T ss_conf             7--86316889999746--8-98789777334556777762699873226535488834799999999999876556788


Q ss_pred             C--EEEEECCCCCCCCCCHHHHHHHHHHHH---HHHHHHHCCCCE
Q ss_conf             6--899976888776521246777788999---999998629988
Q gi|254780820|r  157 P--LVMFTASGGARMQEGILSLMQLPRTTI---AINMLKDAGLPY  196 (284)
Q Consensus       157 P--lI~~~~SGGaRMqEG~~sL~qMakt~~---a~~~l~~~~lP~  196 (284)
T Consensus       562 ~g~viiQt~~p~~---~~~~~l~~~d~~~f~~~el~~R~~~~~PP  603 (699)
T PRK05580        562 PGEVLIQTYEPEH---PLLQALLRWDYDAFAEAELAERREAGLPP  603 (699)
T ss_pred             CCEEEEEECCCCC---HHHHHHHHCCHHHHHHHHHHHHHHCCCCC
T ss_conf             9879999379998---99999996899999999999999709998