HHsearch alignment for GI: 254780820 and conserved domain: PRK05580
>PRK05580 primosome assembly protein PriA; Validated.
Probab=92.36 E-value=0.44 Score=29.19 Aligned_cols=155 Identities=17% Similarity=0.186 Sum_probs=65.5
Q ss_pred EECCCCCCEE-EHHHHHHHCCCCCCCCCCEECCH----------------HHHHHHHC----CCCCCCCCCCCCCCCHHC
Q ss_conf 0566768722-17889863383889989624379----------------99999845----565420133456870201
Q gi|254780820|r 27 VKCPETGAMV-YHKDLKENQWVISSSDFHMKIPA----------------KERLKFLF----DNAKYCLLDQPQVCQDPL 85 (284)
Q Consensus 27 ~kCp~C~~~i-~~~~l~~n~~VCp~C~~H~rl~a----------------reRi~~l~----D~gsf~Ei~~~~~~~DPL 85 (284)
T Consensus 414 ~~C~~C~~~L~~h~~--~~~l~Ch~Cg~~~~~~~~Cp~Cgs~~l~~~g~Gteri~eel~~~FP~~~i~r~d~-----d~~ 486 (699)
T PRK05580 414 ARCPHCDGPLTLHRA--GRRLRCHHCGYQEPIPRACPECGSTDLRAVGVGTERTEEELARLFPGARVLRIDR-----DTT 486 (699)
T ss_pred EECCCCCCEEEECCC--CCCEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECC-----CCC
T ss_conf 565678986342068--9833226468836575546567997524111685999999997789998899847-----556
Q ss_pred CCCCCCCHHHHHHHHHHHCCCCCCEEEEEEEEE-CE----EEEEEEEECHHHCCCCCHHHHHHHHHHH----HHHHHHCC
Q ss_conf 867642035667766642166771699987870-41----4999998330318535778999999999----99986289
Q gi|254780820|r 86 KFRDNKKYIDRLKENRSKTGLIDSIVSAVGNVR-DF----KLVAVVHEFSFIGGSIGIAAGEAIVKSC----ERAIAEKC 156 (284)
Q Consensus 86 ~F~d~k~Y~drl~~a~~kTg~~davv~G~G~I~-G~----~vvv~~~df~F~GGSmG~~~geki~~a~----e~A~~~~~ 156 (284)
T Consensus 487 ~--~~~~~~~~~~~~~~--~-~~dIlvGTqmiakG~df~~v~lv~vldaD~~l~~pd~ra~E~~~qll~qvagragr~~~ 561 (699)
T PRK05580 487 R--RKGALEQLLEDFAR--G-EADILVGTQMLAKGHDFPNVTLVGVLDADTGLFSPDFRAAERTFQLLTQVAGRAGRAEK 561 (699)
T ss_pred C--CCCCHHHHHHHHHC--C-CCCEEECCCCCCCCCCCCCEEEEEEECHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCC
T ss_conf 7--86316889999746--8-98789777334556777762699873226535488834799999999999876556788
Q ss_pred C--EEEEECCCCCCCCCCHHHHHHHHHHHH---HHHHHHHCCCCE
Q ss_conf 6--899976888776521246777788999---999998629988
Q gi|254780820|r 157 P--LVMFTASGGARMQEGILSLMQLPRTTI---AINMLKDAGLPY 196 (284)
Q Consensus 157 P--lI~~~~SGGaRMqEG~~sL~qMakt~~---a~~~l~~~~lP~ 196 (284)
T Consensus 562 ~g~viiQt~~p~~---~~~~~l~~~d~~~f~~~el~~R~~~~~PP 603 (699)
T PRK05580 562 PGEVLIQTYEPEH---PLLQALLRWDYDAFAEAELAERREAGLPP 603 (699)
T ss_pred CCEEEEEECCCCC---HHHHHHHHCCHHHHHHHHHHHHHHCCCCC
T ss_conf 9879999379998---99999996899999999999999709998