HHsearch alignment for GI: 254780820 and conserved domain: TIGR03134
>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit. Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=98.66 E-value=2.7e-06 Score=67.80 Aligned_cols=167 Identities=17% Similarity=0.235 Sum_probs=126.4
Q ss_pred CCEEEEEEEEECEEEEEEEEECHHHCCCCCHHHHHHHHHHHHHHHH--HCCCEEEEECCCCCCCC--CCHHHHH-HHHHH
Q ss_conf 7169998787041499999833031853577899999999999986--28968999768887765--2124677-77889
Q gi|254780820|r 108 DSIVSAVGNVRDFKLVAVVHEFSFIGGSIGIAAGEAIVKSCERAIA--EKCPLVMFTASGGARMQ--EGILSLM-QLPRT 182 (284)
Q Consensus 108 davv~G~G~I~G~~vvv~~~df~F~GGSmG~~~geki~~a~e~A~~--~~~PlI~~~~SGGaRMq--EG~~sL~-qMakt 182 (284)
T Consensus 20 ~~v~~g~a~l~g~~v~vIgvv~~---a~vGl~ea~~lA~~Vl~~i~~d~krPIv~lvD~~gq~~g~r~E~~Gi~~~~A~l 96 (238)
T TIGR03134 20 PGVLVGSAELAGGKVTVIGVVPD---AEVGLDEALALAQAVLDVIEADPKRPIVVLVDTPSQAYGRREELLGINQALAHL 96 (238)
T ss_pred CCEEEEEEEECCCEEEEEEECCC---CCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHCCHHHHHHHH
T ss_conf 87688764778947899996587---533299999999999999983899977999807775456047872399999999
Q ss_pred HHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCCEEEEECCCEEECCCH----HHHHHHH------CCCCCCCCHHHHH
Q ss_conf 99999998629988998567642011112014685255531421102327----8878763------6778872021599
Q gi|254780820|r 183 TIAINMLKDAGLPYIVVLTNPTTGGVTASYAMLGDIHLAEPGAEIGFAGR----RVIEQTV------REKLPDGFQRSEY 252 (284)
Q Consensus 183 ~~a~~~l~~~~lP~I~vl~~pt~GGv~AS~a~lgDiiiaep~a~igFaG~----rVi~~t~------~~~lp~~fqtae~ 252 (284)
T Consensus 97 ~~~~~~Ar~~GHp~i~lv~g~a~sGafla~gl~a~~~~Alp~a~i~vM~~~a~ARVTk~~ve~Le~la~s~PvfApgv~n 176 (238)
T TIGR03134 97 AKALALARLAGHPVIGLIYGKAISGAFLAHGLQADRIIALPGAMVHVMDLESMARVTKRSVEELEALAKSSPVFAPGIEN 176 (238)
T ss_pred HHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCHHCCCCCHHHHCCHHHHHHHHCCCHHHHHHHHCCCCCCCCCHHH
T ss_conf 99999998549986999965734489998664206111278743532785776777607899999984369986778789
Q ss_pred HHHCCCCCEEECHHH---HHHHHHHHHH
Q ss_conf 996898353735899---9999999999
Q gi|254780820|r 253 LVEHGMIDRIVHRHD---IPEVVSSLCK 277 (284)
Q Consensus 253 l~~~G~iD~iv~r~~---l~~~i~~ll~ 277 (284)
T Consensus 177 y~~lG~v~~l~~~~~~~~~a~~l~~~~~ 204 (238)
T TIGR03134 177 FVKLGGVHALLDVADADAPAAQLAAVLA 204 (238)
T ss_pred HHHHCCHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 9983038988466420217999999997