HHsearch alignment for GI: 254780820 and conserved domain: pfam00574
>pfam00574 CLP_protease Clp protease. The Clp protease has an active site catalytic triad. In E. coli Clp protease, ser-111, his-136 and asp-185 form the catalytic triad. A putative Clp protease from Cyanophora paradoxa has lost all of these active site residues and is therefore inactive. A member from Chlamydomonas eugametos contains two large insertions, a member from Chlamydomonas reinhardtii contains one large insertion.
Probab=94.33 E-value=0.29 Score=30.55 Aligned_cols=120 Identities=23% Similarity=0.358 Sum_probs=69.4
Q ss_pred HHCCCCCHHHHHHHHHHHHH--HHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCEE
Q ss_conf 31853577899999999999--9862896899976888776521246777788999999998629988998567642011
Q gi|254780820|r 131 FIGGSIGIAAGEAIVKSCER--AIAEKCPLVMFTASGGARMQEGILSLMQLPRTTIAINMLKDAGLPYIVVLTNPTTGGV 208 (284)
Q Consensus 131 F~GGSmG~~~geki~~a~e~--A~~~~~PlI~~~~SGGaRMqEG~~sL~qMakt~~a~~~l~~~~lP~I~vl~~pt~GGv 208 (284)
T Consensus 20 ~l~~~i~~~~a~~~i~~l~~L~~e~~~~~I~l~INS~GG~v~~g~----------aI~d~i~~~~~~V~Ti~~-----G~ 84 (182)
T pfam00574 20 FLGGEIDDEVANLIIAQLLFLESEDPDKDIYLYINSPGGSVTAGL----------AIYDTMQFIKPDVSTICL-----GL 84 (182)
T ss_pred EECCEECHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHH----------HHHHHHHHCCCCCEEEEE-----EE
T ss_conf 989843689999999999998562969998999989996789999----------999999847998489992-----03
Q ss_pred EEEEC----CCCCE--EEEECCCEE-------ECCCHHH-HH------------------H-------HHCCCCCC-CCH
Q ss_conf 11201----46852--555314211-------0232788-78------------------7-------63677887-202
Q gi|254780820|r 209 TASYA----MLGDI--HLAEPGAEI-------GFAGRRV-IE------------------Q-------TVREKLPD-GFQ 248 (284)
Q Consensus 209 ~AS~a----~lgDi--iiaep~a~i-------gFaG~rV-i~------------------~-------t~~~~lp~-~fq 248 (284)
T Consensus 85 aaS~aslI~~aG~~g~R~~~p~s~~MiHq~~~~~~G~~~di~~~~~~l~~~~~~i~~~ya~~tg~~~~~i~~~~~~d~~l 164 (182)
T pfam00574 85 AASMGSFLLAAGTKGKRFALPNARIMIHQPLGGAQGQASDIEIQAEEILKIRERLNEIYAEHTGQPLEKIEKDLDRDTFM 164 (182)
T ss_pred EECCCCCHHHCCCCCCEEECCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCC
T ss_conf 61455320102677744456570102563654666489999999999999999999999988694999999985078324
Q ss_pred HHHHHHHCCCCCEEECH
Q ss_conf 15999968983537358
Q gi|254780820|r 249 RSEYLVEHGMIDRIVHR 265 (284)
Q Consensus 249 tae~l~~~G~iD~iv~r 265 (284)
T Consensus 165 ta~EA~~~GliD~Ii~~ 181 (182)
T pfam00574 165 SAEEAKEYGLIDEVIES 181 (182)
T ss_pred CHHHHHHCCCCCEECCC
T ss_conf 69999983998685057