HHsearch alignment for GI: 254780820 and conserved domain: pfam01039

>pfam01039 Carboxyl_trans Carboxyl transferase domain. All of the members in this family are biotin dependent carboxylases. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognized types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxoacid as the acceptor molecule of carbon dioxide. All of the members in this family utilize acyl-CoA as the acceptor molecule.
Probab=99.69  E-value=6.3e-15  Score=131.55  Aligned_cols=196  Identities=17%  Similarity=0.213  Sum_probs=152.8

Q ss_pred             EECCHHHHHHHHCCCCCCCCCCCCCCCCHHCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEEEECEEEEEEEEECHHHCC
Q ss_conf             24379999998455654201334568702018676420356677666421667716999878704149999983303185
Q gi|254780820|r   55 MKIPAKERLKFLFDNAKYCLLDQPQVCQDPLKFRDNKKYIDRLKENRSKTGLIDSIVSAVGNVRDFKLVAVVHEFSFIGG  134 (284)
Q Consensus        55 ~rl~areRi~~l~D~gsf~Ei~~~~~~~DPL~F~d~k~Y~drl~~a~~kTg~~davv~G~G~I~G~~vvv~~~df~F~GG  134 (284)
T Consensus       254 ~~yD~r~vi~~i~D~~sf~E~~~--------------~~-------------g~~ivtg~arl~G~~VGviAn~p~~~~G  306 (487)
T pfam01039       254 RPYDVREVIAGIVDEGSFFETKA--------------GY-------------AKTVVTGFARLGGIPVGVVANQPRVLAG  306 (487)
T ss_pred             CCCCHHHHHHHCCCCCCEEEECC--------------CC-------------CCCCEEEEEEECCCEEEEECCCCCCCCC
T ss_conf             76539999887156775476434--------------44-------------6651266788738547998336543467


Q ss_pred             CCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCC-----CCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCEEE
Q ss_conf             35778999999999999862896899976888776-----5212467777889999999986299889985676420111
Q gi|254780820|r  135 SIGIAAGEAIVKSCERAIAEKCPLVMFTASGGARM-----QEGILSLMQLPRTTIAINMLKDAGLPYIVVLTNPTTGGVT  209 (284)
Q Consensus       135 SmG~~~geki~~a~e~A~~~~~PlI~~~~SGGaRM-----qEG~~sL~qMakt~~a~~~l~~~~lP~I~vl~~pt~GGv~  209 (284)
T Consensus       307 ~l~~~aa~Kaarfi~lcd~~~iPlv~lvDtpGf~~G~~~E~~G~i~--~ga~~---~~a~a~~~vP~itvi~rk~~G~~~  381 (487)
T pfam01039       307 VLFIDSADKAARFIRLCDAFNIPLVILVDVPGFLPGTDQEYGGILK--HGAKL---LYALAEATVPKITVIPRKAYGGAY  381 (487)
T ss_pred             CCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHCCHHH--HHHHH---HHHHHHCCCCEEEEEECCCCCHHH
T ss_conf             5304558999999998633399769998489887788999746899--99999---999985589889999787645576


Q ss_pred             EEECCC-----CCEEEEECCCEEECCCHHHHHHHH-CCCC------CCCCH---------------HHHHHHHCCCCCEE
Q ss_conf             120146-----852555314211023278878763-6778------87202---------------15999968983537
Q gi|254780820|r  210 ASYAML-----GDIHLAEPGAEIGFAGRRVIEQTV-REKL------PDGFQ---------------RSEYLVEHGMIDRI  262 (284)
Q Consensus       210 AS~a~l-----gDiiiaep~a~igFaG~rVi~~t~-~~~l------p~~fq---------------tae~l~~~G~iD~i  262 (284)
T Consensus       382 --~am~g~~~~~d~~~awP~a~~~vm~~egav~i~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~vD~v  459 (487)
T pfam01039       382 --VVMDSKINGADAVAAWPTARIAVMGPEGAVEIKFRKELAAATMRYKDLEALRAQKIAEYEEQLSPPYVAAARGFADLV  459 (487)
T ss_pred             --HHHCCCCCCCCEEEECCCCCEECCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCC
T ss_conf             --641565678877999798836237999999998788886443468698999999999999861999999870675871


Q ss_pred             ECHHHHHHHHHHHHHHHHCCCC
Q ss_conf             3589999999999999723789
Q gi|254780820|r  263 VHRHDIPEVVSSLCKILTKSVQ  284 (284)
Q Consensus       263 v~r~~l~~~i~~ll~il~~~~~  284 (284)
T Consensus       460 IdP~~tR~~l~~~l~~~~~k~~  481 (487)
T pfam01039       460 IDPGRTRAKLVIALALLWHKPR  481 (487)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCC
T ss_conf             8889999999999999864974