HHsearch results for GI: 254780820 and protein with PDBid: 1vrg_A
>1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 2.30A {Thermotoga maritima MSB8} SCOP: c.14.1.4 c.14.1.4
Probab=99.70 E-value=2e-15 Score=133.68 Aligned_cols=202 Identities=16% Similarity=0.280 Sum_probs=155.8
Q ss_pred CCCCEECCHHHHHHHHCCCCCCCCCCCCCCCCHHCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEEEECEEEEEEEEECH
Q ss_conf 98962437999999845565420133456870201867642035667766642166771699987870414999998330
Q gi|254780820|r 51 SDFHMKIPAKERLKFLFDNAKYCLLDQPQVCQDPLKFRDNKKYIDRLKENRSKTGLIDSIVSAVGNVRDFKLVAVVHEFS 130 (284)
Q Consensus 51 C~~H~rl~areRi~~l~D~gsf~Ei~~~~~~~DPL~F~d~k~Y~drl~~a~~kTg~~davv~G~G~I~G~~vvv~~~df~ 130 (284)
.+..-....|+-|+.++|.++|.|+... | ..++|||.++|+|+||.+++.+..
T Consensus 288 ~~~~~~yD~r~vi~~l~D~~~f~E~~~~--------------~-------------g~~vvtg~arl~G~pVgviAn~~~ 340 (527)
T 1vrg_A 288 DNPNKGYDVRDVIKRVVDHGEFFEVQPY--------------F-------------AKNIVIGFARIQGKTVGIVANQPS 340 (527)
T ss_dssp SSTTSCCCTHHHHHHHSGGGCCEEESTT--------------S-------------STTEEEEEEEETTEEEEEEEECTT
T ss_pred CCCCCCCCHHHHHHHHCCCCCHHHHHCC--------------C-------------CCCEEEEEEEECCEEEEEEECCCC
T ss_conf 9989887899999984688512000004--------------6-------------885799999999888889833663
Q ss_pred HHCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCC-----CCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 318535778999999999999862896899976888776-----521246777788999999998629988998567642
Q gi|254780820|r 131 FIGGSIGIAAGEAIVKSCERAIAEKCPLVMFTASGGARM-----QEGILSLMQLPRTTIAINMLKDAGLPYIVVLTNPTT 205 (284)
Q Consensus 131 F~GGSmG~~~geki~~a~e~A~~~~~PlI~~~~SGGaRM-----qEG~~sL~qMakt~~a~~~l~~~~lP~I~vl~~pt~ 205 (284)
+++|.+.....+|..|.++.|-+.++|||.|.+.-|+-. +.|++. ..++. +..+.++.+|.|+|+++..+
T Consensus 341 ~~~G~~~~~~a~Kaarfi~lcd~~~lPlv~lvDtpGf~~G~~aE~~G~~~--~gA~l---~~a~a~~~vP~i~vi~gk~~ 415 (527)
T 1vrg_A 341 VLAGVLDIDSSDKAARFIRFLDAFNIPILTFVDTPGYLPGVAQEHGGIIR--HGAKL---LYAYSEATVPKITVILRKAY 415 (527)
T ss_dssp SGGGCBCHHHHHHHHHHHHHHHHTTCCEEEEEEECCBCCCHHHHHTTHHH--HHHHH---HHHHHHCCSCEEEEEEEEEE
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHH--HHHHH---HHHHHHCCCCEEEEEECCCC
T ss_conf 33788750478999999998514598669995068868878999974999--99999---99998389987999868866
Q ss_pred CEEEEEEC---CCCCEEEEECCCEEECCCHHHHHHHH-C-----CCCCCC------------CHHHHHHHHCCCCCEEEC
Q ss_conf 01111201---46852555314211023278878763-6-----778872------------021599996898353735
Q gi|254780820|r 206 GGVTASYA---MLGDIHLAEPGAEIGFAGRRVIEQTV-R-----EKLPDG------------FQRSEYLVEHGMIDRIVH 264 (284)
Q Consensus 206 GGv~AS~a---~lgDiiiaep~a~igFaG~rVi~~t~-~-----~~lp~~------------fqtae~l~~~G~iD~iv~ 264 (284)
||.+...+ +-.|+++|-|.|.++.-+|.-...++ + .+-|+. +-.+....+.|+||.||+
T Consensus 416 Ggg~~am~~~~~~~d~~~Awp~a~~~vm~pegaa~i~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~iD~VId 495 (527)
T 1vrg_A 416 GGAYIAMGSKHLGADMVLAWPSAEIAVMGPEGAANIIFKREIEASSNPEETRRKLIEEYKQQFANPYIAASRGYVDMVID 495 (527)
T ss_dssp HHHHHHTTCGGGTCSEEEECTTCEEESSCHHHHHHHHTHHHHHHSSCHHHHHHHHHHHHHHHTSSHHHHHHTTSSSEECC
T ss_pred CHHHHHCCCCCCCCCEEEECCCCEEEECCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHCCCCCEEEC
T ss_conf 58776106777788889997877186169999999884312115579899999999999998579999987578881088
Q ss_pred HHHHHHHHHHHHHHHHCCCC
Q ss_conf 89999999999999723789
Q gi|254780820|r 265 RHDIPEVVSSLCKILTKSVQ 284 (284)
Q Consensus 265 r~~l~~~i~~ll~il~~~~~ 284 (284)
+.+.|+.|...|+++..|.+
T Consensus 496 P~~tR~~l~~~l~~~~~k~~ 515 (527)
T 1vrg_A 496 PRETRKYIMRALEVCETKVE 515 (527)
T ss_dssp GGGHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHHCCC
T ss_conf 89999999999999760642