Query gi|254780820|ref|YP_003065233.1| acetyl-CoA carboxylase subunit beta [Candidatus Liberibacter asiaticus str. psy62] Match_columns 284 No_of_seqs 178 out of 1955 Neff 5.6 Searched_HMMs 23785 Date Mon May 30 12:57:57 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780820.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 2f9i_B Acetyl-coenzyme A carbo 100.0 0 0 717.2 26.2 281 1-284 3-285 (285) 2 2f9y_B Acetyl-coenzyme A carbo 100.0 0 0 692.9 23.9 280 1-282 1-280 (304) 3 2bzr_A Propionyl-COA carboxyla 100.0 4.1E-42 0 331.0 19.7 212 56-280 56-270 (548) 4 3iav_A Propionyl-COA carboxyla 100.0 1.1E-41 0 327.8 20.2 229 39-280 19-259 (530) 5 3n6r_B Propionyl-COA carboxyla 100.0 1.2E-41 0 327.5 19.9 212 56-280 53-267 (531) 6 1on3_A Methylmalonyl-COA carbo 100.0 8E-42 0 328.8 18.2 210 56-279 43-255 (523) 7 1vrg_A Propionyl-COA carboxyla 100.0 2.6E-41 1.4E-45 325.1 19.1 212 56-280 46-260 (527) 8 1x0u_A Hypothetical methylmalo 100.0 1E-40 4.2E-45 320.7 22.1 213 56-281 39-255 (522) 9 3gf3_A Glutaconyl-COA decarbox 100.0 1.7E-35 7.3E-40 282.0 17.7 205 56-280 61-290 (588) 10 1pix_A Glutaconyl-COA decarbox 100.0 1.8E-33 7.8E-38 267.0 16.2 205 56-280 60-287 (587) 11 3k8x_A Acetyl-COA carboxylase; 99.9 4E-26 1.7E-30 212.8 18.1 172 107-280 86-336 (758) 12 3ff6_A Acetyl-COA carboxylase 99.9 7.9E-26 3.3E-30 210.6 15.2 171 107-279 76-322 (760) 13 3iav_A Propionyl-COA carboxyla 99.7 1.1E-15 4.8E-20 135.5 20.1 204 46-284 286-518 (530) 14 1x0u_A Hypothetical methylmalo 99.7 1.6E-15 6.6E-20 134.4 20.6 200 52-283 284-509 (522) 15 2bzr_A Propionyl-COA carboxyla 99.7 3.1E-15 1.3E-19 132.2 21.1 206 44-283 300-535 (548) 16 3n6r_B Propionyl-COA carboxyla 99.7 1.4E-15 6.1E-20 134.7 17.2 202 47-283 293-518 (531) 17 1on3_A Methylmalonyl-COA carbo 99.7 1.9E-15 7.9E-20 133.9 17.7 200 52-283 285-510 (523) 18 1vrg_A Propionyl-COA carboxyla 99.7 2E-15 8.3E-20 133.7 17.0 202 51-284 288-515 (527) 19 3gf3_A Glutaconyl-COA decarbox 99.7 4.5E-14 1.9E-18 123.7 19.6 200 51-284 318-566 (588) 20 1pix_A Glutaconyl-COA decarbox 99.6 1.7E-14 7.1E-19 126.8 16.3 203 47-284 312-564 (587) 21 2f9i_A Acetyl-coenzyme A carbo 99.5 7.4E-12 3.1E-16 107.2 20.3 205 51-282 73-306 (327) 22 3ff6_A Acetyl-COA carboxylase 99.5 4.7E-12 2E-16 108.7 16.7 167 107-281 388-644 (760) 23 2f9y_A Acetyl-COA carboxylase, 99.5 1.2E-11 4.8E-16 105.8 18.2 203 51-281 87-319 (339) 24 3k8x_A Acetyl-COA carboxylase; 99.4 9.1E-11 3.8E-15 99.2 17.1 191 56-278 365-653 (758) 25 3isa_A Putative enoyl-COA hydr 98.1 0.00033 1.4E-08 50.7 15.6 158 123-282 18-200 (254) 26 1ef8_A Methylmalonyl COA decar 98.0 0.00028 1.2E-08 51.2 14.2 161 122-283 14-202 (261) 27 2vx2_A Enoyl-COA hydratase dom 98.0 0.00038 1.6E-08 50.2 14.6 161 114-282 37-230 (287) 28 2a7k_A CARB; crotonase, antibi 98.0 0.0015 6.2E-08 45.9 17.1 162 121-283 9-199 (250) 29 3lke_A Enoyl-COA hydratase; ny 98.0 0.0013 5.7E-08 46.2 16.7 156 125-282 17-207 (263) 30 3myb_A Enoyl-COA hydratase; ss 98.0 0.00091 3.8E-08 47.4 15.5 160 122-282 36-223 (286) 31 3njd_A Enoyl-COA hydratase; ss 97.9 0.00076 3.2E-08 48.0 14.9 159 117-282 41-259 (333) 32 3ome_A Enoyl-COA hydratase; ss 97.9 0.00084 3.5E-08 47.7 14.4 160 117-283 29-224 (282) 33 3he2_A Enoyl-COA hydratase ECH 97.9 0.00069 2.9E-08 48.3 13.9 148 122-275 31-205 (264) 34 2gtr_A CDY-like, chromodomain 97.9 0.0013 5.6E-08 46.2 15.2 146 132-283 26-207 (261) 35 2ej5_A Enoyl-COA hydratase sub 97.9 0.0019 8E-08 45.1 15.8 161 122-283 13-200 (257) 36 2j5g_A ALR4455 protein; enzyme 97.8 0.0032 1.3E-07 43.4 17.3 150 132-283 44-223 (263) 37 2f6q_A Peroxisomal 3,2-trans-e 97.8 0.0027 1.1E-07 44.0 16.2 161 122-283 36-227 (280) 38 2fbm_A Y chromosome chromodoma 97.8 0.00025 1.1E-08 51.6 11.0 160 122-282 33-224 (291) 39 2iex_A Dihydroxynapthoic acid 97.8 0.0024 1E-07 44.3 15.9 156 122-283 22-212 (272) 40 2q35_A CURF; crotonase, lyase; 97.8 0.00044 1.8E-08 49.8 11.9 157 122-283 13-196 (243) 41 3hp0_A Putative polyketide bio 97.8 0.0004 1.7E-08 50.1 11.6 147 122-269 17-191 (267) 42 3pea_A Enoyl-COA hydratase/iso 97.8 0.003 1.3E-07 43.6 15.9 163 117-283 12-204 (261) 43 3h02_A Naphthoate synthase; ID 97.8 0.0012 5.1E-08 46.5 13.9 146 132-283 47-228 (288) 44 1uiy_A Enoyl-COA hydratase; ly 97.8 0.002 8.2E-08 45.0 14.9 157 121-283 8-199 (253) 45 3gow_A PAAG, probable enoyl-CO 97.8 0.0012 5.2E-08 46.5 13.8 159 122-282 10-196 (254) 46 3kqf_A Enoyl-COA hydratase/iso 97.8 0.0009 3.8E-08 47.5 13.0 160 122-283 19-208 (265) 47 2j5i_A P-hydroxycinnamoyl COA 97.8 0.0019 8.1E-08 45.0 14.4 165 116-283 14-212 (276) 48 3bpp_A 1510-N membrane proteas 97.7 0.0017 7E-08 45.5 13.6 126 134-271 17-181 (230) 49 3l3s_A Enoyl-COA hydratase/iso 97.7 0.0045 1.9E-07 42.3 15.8 155 122-283 17-209 (263) 50 3ot6_A Enoyl-COA hydratase/iso 97.7 0.001 4.4E-08 47.0 11.9 159 122-283 16-201 (232) 51 3i47_A Enoyl COA hydratase/iso 97.6 0.0017 7.1E-08 45.5 12.7 160 122-283 14-204 (268) 52 3hin_A Putative 3-hydroxybutyr 97.6 0.0011 4.8E-08 46.7 11.7 162 118-282 23-211 (275) 53 2pbp_A Enoyl-COA hydratase sub 97.6 0.0026 1.1E-07 44.0 13.3 161 121-282 14-200 (258) 54 3h81_A Enoyl-COA hydratase ECH 97.6 0.00096 4E-08 47.3 10.9 160 122-282 35-220 (278) 55 3g64_A Putative enoyl-COA hydr 97.6 0.0067 2.8E-07 41.0 15.2 161 116-283 22-220 (279) 56 1sg4_A 3,2-trans-enoyl-COA iso 97.6 0.0022 9.3E-08 44.6 12.5 149 134-283 26-205 (260) 57 1wz8_A Enoyl-COA hydratase; ly 97.5 0.0041 1.7E-07 42.6 13.2 155 122-283 21-210 (264) 58 3moy_A Probable enoyl-COA hydr 97.5 0.0016 6.7E-08 45.6 10.8 160 122-282 20-205 (263) 59 3p5m_A Enoyl-COA hydratase/iso 97.5 0.0034 1.4E-07 43.2 12.4 159 122-282 16-197 (255) 60 1szo_A 6-oxocamphor hydrolase; 97.5 0.01 4.4E-07 39.6 16.9 161 121-283 25-214 (257) 61 3bpt_A 3-hydroxyisobutyryl-COA 97.4 0.011 4.8E-07 39.4 14.8 153 118-277 13-201 (363) 62 1hzd_A AUH, AU-binding protein 97.4 0.0064 2.7E-07 41.2 12.9 146 122-268 22-196 (272) 63 3gkb_A Putative enoyl-COA hydr 97.4 0.011 4.5E-07 39.6 14.0 154 127-283 25-213 (287) 64 3p85_A Enoyl-COA hydratase; ss 97.4 0.00095 4E-08 47.3 8.5 160 122-282 35-213 (270) 65 3h0u_A Putative enoyl-COA hydr 97.4 0.0063 2.7E-07 41.2 12.7 164 117-283 14-210 (289) 66 1nzy_A Dehalogenase, 4-chlorob 97.3 0.015 6.1E-07 38.5 15.6 161 122-283 13-206 (269) 67 1mj3_A Enoyl-COA hydratase, mi 97.3 0.0023 9.8E-08 44.4 10.1 155 122-282 17-202 (260) 68 3ju1_A Enoyl-COA hydratase/iso 97.1 0.022 9.3E-07 37.2 13.4 162 114-276 44-240 (407) 69 1dci_A Dienoyl-COA isomerase; 97.1 0.026 1.1E-06 36.6 15.7 160 122-282 14-214 (275) 70 3oc7_A Enoyl-COA hydratase; se 97.0 0.029 1.2E-06 36.3 14.9 167 108-282 6-210 (267) 71 1q52_A MENB; lyase, structural 97.0 0.03 1.3E-06 36.2 13.9 169 111-282 37-253 (314) 72 1wdk_A Fatty oxidation complex 96.9 0.035 1.5E-06 35.7 17.1 159 122-281 17-207 (715) 73 2w3p_A Benzoyl-COA-dihydrodiol 96.9 0.03 1.3E-06 36.2 12.5 164 117-282 27-239 (556) 74 3bf0_A Protease 4; bacterial, 96.9 0.0095 4E-07 39.9 9.6 82 135-228 318-405 (593) 75 1pjh_A Enoyl-COA isomerase; EC 96.8 0.043 1.8E-06 35.1 15.9 143 116-265 14-201 (280) 76 2np9_A DPGC; protein inhibitor 96.8 0.044 1.8E-06 35.0 12.6 152 122-279 177-385 (440) 77 3bf0_A Protease 4; bacterial, 96.8 0.018 7.7E-07 37.8 10.5 159 110-277 35-275 (593) 78 3lao_A Enoyl-COA hydratase/iso 96.7 0.01 4.4E-07 39.6 8.9 158 122-282 22-210 (258) 79 2x58_A Peroxisomal bifunctiona 96.6 0.06 2.5E-06 34.0 12.3 155 115-273 10-187 (727) 80 2ppy_A Enoyl-COA hydratase; be 96.5 0.067 2.8E-06 33.6 14.5 155 122-283 19-208 (265) 81 3m6n_A RPFF protein; enoyl-COA 96.4 0.0055 2.3E-07 41.6 5.8 92 189-281 136-244 (305) 82 2wtb_A MFP2, fatty acid multif 95.9 0.039 1.6E-06 35.4 7.9 160 119-281 15-206 (725) 83 3fdu_A Putative enoyl-COA hydr 95.8 0.14 5.9E-06 31.3 17.0 147 122-269 15-191 (266) 84 1yg6_A ATP-dependent CLP prote 91.0 0.81 3.4E-05 25.6 7.1 121 131-266 30-192 (193) 85 2cby_A ATP-dependent CLP prote 91.0 0.22 9.1E-06 29.9 4.1 125 131-270 31-197 (208) 86 3p2l_A ATP-dependent CLP prote 90.2 0.52 2.2E-05 27.1 5.5 123 131-268 34-199 (201) 87 2ct7_A Ring finger protein 31; 89.5 0.09 3.8E-06 32.7 1.1 37 23-60 22-58 (86) 88 2akl_A PHNA-like protein PA012 89.3 0.034 1.4E-06 35.8 -1.1 29 26-56 27-55 (138) 89 2zjr_Z 50S ribosomal protein L 88.3 0.27 1.1E-05 29.2 2.9 23 26-54 30-52 (60) 90 2f6i_A ATP-dependent CLP prote 87.8 0.87 3.7E-05 25.4 5.2 120 131-265 43-203 (215) 91 1y7o_A ATP-dependent CLP prote 87.7 0.49 2.1E-05 27.3 3.9 123 131-268 49-215 (218) 92 2j01_5 50S ribosomal protein L 87.4 0.13 5.4E-06 31.6 0.8 23 26-54 30-52 (60) 93 3gtx_A Organophosphorus hydrol 84.1 1.3 5.5E-05 24.1 4.6 106 136-263 167-276 (339) 94 1lko_A Rubrerythrin all-iron(I 83.5 0.13 5.3E-06 31.6 -0.8 27 23-53 153-179 (191) 95 1dl6_A Transcription factor II 83.4 0.11 4.5E-06 32.2 -1.2 35 18-54 5-39 (58) 96 3h0g_I DNA-directed RNA polyme 83.2 0.17 7E-06 30.7 -0.3 31 27-57 5-38 (113) 97 3k2g_A Resiniferatoxin-binding 83.1 0.34 1.4E-05 28.4 1.3 110 136-263 184-300 (364) 98 3ofq_0 50S ribosomal protein L 82.0 0.44 1.9E-05 27.6 1.5 22 26-54 27-48 (56) 99 1twf_I B12.6, DNA-directed RNA 80.4 0.29 1.2E-05 28.9 0.2 32 27-58 5-39 (122) 100 3cwc_A Putative glycerate kina 79.8 1.7 7.1E-05 23.3 3.9 23 141-163 305-327 (383) 101 2k5c_A Uncharacterized protein 79.4 1.3 5.5E-05 24.1 3.2 43 26-68 8-80 (95) 102 3o9x_A Uncharacterized HTH-typ 79.0 0.23 9.6E-06 29.7 -0.8 68 27-107 3-86 (133) 103 2vc7_A Aryldialkylphosphatase; 78.8 2.2 9.4E-05 22.4 4.2 105 136-263 145-252 (314) 104 1y7p_A Hypothetical protein AF 78.6 1.1 4.5E-05 24.8 2.5 88 114-210 82-201 (223) 105 2apo_B Ribosome biogenesis pro 78.5 2.1 8.6E-05 22.7 4.0 21 26-53 6-26 (60) 106 3m7n_A Putative uncharacterize 77.5 0.48 2E-05 27.3 0.5 26 25-53 139-164 (179) 107 3a43_A HYPD, hydrogenase nicke 77.4 0.89 3.7E-05 25.3 1.9 28 27-54 71-116 (139) 108 2kdx_A HYPA, hydrogenase/ureas 76.5 0.67 2.8E-05 26.3 1.0 29 27-57 74-103 (119) 109 2nn6_I 3'-5' exoribonuclease C 75.8 0.6 2.5E-05 26.6 0.7 10 115-124 90-99 (209) 110 2aus_D NOP10, ribosome biogene 74.9 2.4 9.9E-05 22.2 3.5 22 25-53 4-25 (60) 111 3k7a_M Transcription initiatio 74.8 0.39 1.6E-05 28.0 -0.5 31 25-55 20-52 (345) 112 1tg6_A Putative ATP-dependent 74.1 4.8 0.0002 19.9 4.9 120 131-265 86-247 (277) 113 3k1f_M Transcription initiatio 73.3 0.54 2.3E-05 27.0 -0.1 32 24-55 19-52 (197) 114 3cng_A Nudix hydrolase; struct 71.0 0.35 1.5E-05 28.4 -1.5 34 26-59 3-39 (189) 115 1pft_A TFIIB, PFTFIIBN; N-term 70.4 0.47 2E-05 27.4 -1.0 28 27-54 6-33 (50) 116 1l1o_C Replication protein A 7 69.6 0.68 2.9E-05 26.2 -0.3 48 22-71 38-89 (181) 117 1vk6_A NADH pyrophosphatase; 1 69.2 0.68 2.9E-05 26.2 -0.4 23 129-153 166-188 (269) 118 1nnq_A Rubrerythrin; structura 68.9 1.6 6.8E-05 23.4 1.5 38 13-54 126-163 (171) 119 1s1m_A CTP synthase; CTP synth 67.6 6.2 0.00026 19.1 4.3 58 133-202 350-418 (545) 120 3ihp_A Ubiquitin carboxyl-term 67.5 0.91 3.8E-05 25.3 0.0 29 17-53 207-235 (854) 121 1qyp_A RNA polymerase II; tran 67.2 0.48 2E-05 27.3 -1.5 35 21-56 11-54 (57) 122 1cjy_A CPLA2, protein (cytosol 66.6 6.7 0.00028 18.8 4.3 46 154-207 185-230 (749) 123 2qkd_A Zinc finger protein ZPR 65.4 0.51 2.1E-05 27.1 -1.6 70 127-206 306-375 (404) 124 3flo_B DNA polymerase alpha ca 64.9 0.59 2.5E-05 26.7 -1.4 49 20-68 16-73 (206) 125 2qkd_A Zinc finger protein ZPR 64.6 0.71 3E-05 26.1 -1.0 30 27-56 13-52 (404) 126 2jmo_A Parkin; IBR, E3 ligase, 64.6 1.9 8.1E-05 22.8 1.2 32 24-57 25-62 (80) 127 1wjv_A Cell growth regulating 63.4 2.1 8.7E-05 22.6 1.2 29 25-53 9-37 (79) 128 3hww_A 2-succinyl-5-enolpyruvy 63.0 0.43 1.8E-05 27.7 -2.3 132 123-280 409-554 (556) 129 2e9h_A EIF-5, eukaryotic trans 62.8 0.5 2.1E-05 27.2 -2.1 42 25-66 102-147 (157) 130 1yop_A KTI11P; zinc finger, me 62.7 3.2 0.00013 21.2 2.0 45 24-77 21-69 (83) 131 2g2k_A EIF-5, eukaryotic trans 62.6 0.42 1.8E-05 27.7 -2.5 43 25-67 95-141 (170) 132 1h7b_A Anaerobic ribonucleotid 61.4 1.4 6E-05 23.8 0.1 56 138-198 204-270 (605) 133 3na7_A HP0958; flagellar bioge 61.3 1.3 5.5E-05 24.1 -0.1 42 27-79 199-245 (256) 134 1p91_A Ribosomal RNA large sub 60.9 2 8.3E-05 22.8 0.7 35 27-65 3-37 (269) 135 3ojg_A Phosphotriesterase; (be 59.7 9.1 0.00038 17.9 4.9 106 136-264 157-267 (330) 136 1lgy_A Lipase, triacylglycerol 58.6 1.7 7E-05 23.3 0.0 86 149-235 88-181 (269) 137 2jr7_A DPH3 homolog; DESR1, CS 58.1 7.9 0.00033 18.3 3.4 44 24-76 21-68 (89) 138 2axo_A Hypothetical protein AT 57.4 9.9 0.00041 17.6 4.5 91 48-157 54-147 (270) 139 2ctd_A Zinc finger protein 512 57.0 5.2 0.00022 19.6 2.3 40 27-66 35-83 (96) 140 2yre_A F-box only protein 30; 57.0 5.5 0.00023 19.5 2.5 37 25-61 36-82 (100) 141 2pzi_A Probable serine/threoni 56.9 2.7 0.00011 21.8 0.8 117 19-137 28-172 (681) 142 1wge_A Hypothetical protein 26 56.9 6.7 0.00028 18.8 2.9 44 25-77 29-76 (83) 143 2kpi_A Uncharacterized protein 56.8 2.1 8.8E-05 22.6 0.3 32 26-58 10-41 (56) 144 2gnr_A Conserved hypothetical 56.8 3.2 0.00013 21.2 1.2 25 25-54 46-70 (145) 145 1wd2_A Ariadne-1 protein homol 55.9 1.3 5.4E-05 24.1 -0.9 31 26-57 6-38 (60) 146 2jr6_A UPF0434 protein NMA0874 54.7 1.7 7.3E-05 23.2 -0.4 30 27-57 9-38 (68) 147 1yuz_A Nigerythrin; rubrythrin 54.5 2.8 0.00012 21.6 0.6 11 146-156 125-135 (202) 148 3kuu_A Phosphoribosylaminoimid 54.4 6.3 0.00027 19.0 2.4 41 151-202 86-127 (174) 149 1s24_A Rubredoxin 2; electron 53.4 2.3 9.7E-05 22.3 0.0 25 27-53 36-76 (87) 150 1tia_A Lipase; hydrolase(carbo 53.0 3.7 0.00015 20.8 1.0 71 164-235 103-177 (279) 151 2g45_A Ubiquitin carboxyl-term 53.0 3.2 0.00013 21.3 0.7 26 20-53 29-54 (129) 152 2c46_A MRNA capping enzyme; gu 52.7 4.2 0.00017 20.4 1.3 22 16-38 23-44 (241) 153 2e72_A POGO transposable eleme 52.5 5.5 0.00023 19.5 1.8 21 45-65 12-32 (49) 154 2vbf_A Branched-chain alpha-ke 52.3 0.71 3E-05 26.0 -2.7 134 132-282 423-568 (570) 155 2js4_A UPF0434 protein BB2007; 52.1 2.1 8.9E-05 22.6 -0.3 39 26-67 8-46 (70) 156 1tgl_A Triacyl-glycerol acylhy 52.1 5.9 0.00025 19.3 1.9 71 163-234 101-179 (269) 157 2jny_A Uncharacterized BCR; st 51.1 2.1 8.8E-05 22.6 -0.5 30 27-57 11-40 (67) 158 2eod_A TNF receptor-associated 50.3 6.8 0.00028 18.8 2.0 25 25-49 9-33 (66) 159 2waq_P DNA-directed RNA polyme 50.1 2.2 9.2E-05 22.5 -0.5 29 27-55 4-33 (48) 160 1wep_A PHF8; structural genomi 50.0 10 0.00042 17.6 2.9 34 20-53 21-62 (79) 161 2kn9_A Rubredoxin; metalloprot 49.7 3 0.00013 21.4 0.1 26 26-53 27-68 (81) 162 2w7t_A CTP synthetase, putativ 49.6 10 0.00044 17.4 2.9 30 134-163 75-104 (273) 163 2v4u_A CTP synthase 2; pyrimid 49.6 9.9 0.00041 17.6 2.8 33 131-163 95-127 (289) 164 2fuk_A XC6422 protein; A/B hyd 49.2 6.3 0.00026 19.1 1.7 84 121-212 38-127 (220) 165 1vd4_A Transcription initiatio 48.5 6.9 0.00029 18.8 1.8 27 27-53 15-47 (62) 166 3nva_A CTP synthase; rossman f 48.4 7.3 0.00031 18.6 1.9 57 133-201 357-424 (535) 167 2gqj_A Zinc finger protein KIA 48.1 5.7 0.00024 19.4 1.3 40 26-65 24-74 (98) 168 2jne_A Hypothetical protein YF 47.8 2.7 0.00011 21.8 -0.3 35 21-58 25-61 (101) 169 1oj7_A Hypothetical oxidoreduc 47.6 14 0.00058 16.5 5.7 65 140-213 91-171 (408) 170 6rxn_A Rubredoxin; electron tr 47.5 5.5 0.00023 19.5 1.2 26 27-53 5-38 (46) 171 1z34_A Purine nucleoside phosp 47.4 14 0.00058 16.5 3.3 50 108-167 43-94 (235) 172 2jrp_A Putative cytoplasmic pr 47.4 2.6 0.00011 21.9 -0.5 30 27-59 3-32 (81) 173 2yuc_A TNF receptor-associated 46.9 9.2 0.00039 17.8 2.3 19 26-44 16-35 (76) 174 2hf1_A Tetraacyldisaccharide-1 46.8 2.7 0.00011 21.8 -0.5 30 27-57 9-38 (68) 175 1m2o_A SEC23, protein transpor 46.2 9 0.00038 17.9 2.1 34 27-60 56-92 (768) 176 3oow_A Phosphoribosylaminoimid 46.1 11 0.00047 17.2 2.6 41 151-202 79-120 (166) 177 2pk7_A Uncharacterized protein 45.7 2.5 0.00011 22.0 -0.7 30 27-57 9-38 (69) 178 3cw2_K Translation initiation 45.6 2.7 0.00012 21.7 -0.6 35 25-59 102-138 (139) 179 1tfi_A Transcriptional elongat 45.2 2.1 8.9E-05 22.5 -1.2 31 27-57 10-49 (50) 180 2ha9_A UPF0210 protein SP0239; 45.0 15 0.00063 16.2 6.6 95 143-249 129-234 (446) 181 1q68_B Proto-oncogene tyrosine 44.4 7.1 0.0003 18.7 1.4 17 38-54 4-20 (29) 182 1q14_A HST2 protein; histone d 43.5 16 0.00067 16.1 3.2 80 128-221 184-271 (361) 183 2exu_A Transcription initiatio 42.8 9.7 0.00041 17.7 1.9 26 27-54 5-30 (200) 184 1o2d_A Alcohol dehydrogenase, 42.7 16 0.00068 16.0 4.1 92 92-213 56-160 (371) 185 1o4v_A Phosphoribosylaminoimid 42.5 14 0.00057 16.6 2.6 41 151-202 87-128 (183) 186 1s1i_9 L37A, YL35, 60S ribosom 42.4 6.2 0.00026 19.1 0.8 40 19-59 28-67 (91) 187 1nui_A DNA primase/helicase; z 42.3 5.3 0.00022 19.6 0.5 28 28-59 16-47 (255) 188 1tib_A Lipase; hydrolase(carbo 42.0 2.6 0.00011 21.9 -1.1 84 151-235 90-177 (269) 189 1weo_A Cellulose synthase, cat 41.5 5 0.00021 19.8 0.2 31 26-56 35-69 (93) 190 3lqh_A Histone-lysine N-methyl 41.5 13 0.00055 16.7 2.4 32 22-53 17-62 (183) 191 1dx8_A Rubredoxin; electron tr 41.1 5 0.00021 19.8 0.2 51 21-93 3-69 (70) 192 2ywx_A Phosphoribosylaminoimid 41.0 8.5 0.00036 18.1 1.3 42 151-203 70-111 (157) 193 3eh1_A Protein transport prote 41.0 3.3 0.00014 21.1 -0.7 34 26-59 85-120 (751) 194 2elp_A Zinc finger protein 406 40.7 6.6 0.00028 18.9 0.8 13 46-58 10-22 (37) 195 1u11_A PURE (N5-carboxyaminoim 40.5 5.1 0.00021 19.7 0.1 41 151-202 95-136 (182) 196 1rrm_A Lactaldehyde reductase; 40.4 18 0.00074 15.8 5.0 112 66-207 13-146 (386) 197 1zu4_A FTSY; GTPase, signal re 40.0 18 0.00075 15.7 6.7 69 136-207 172-241 (320) 198 3bvo_A CO-chaperone protein HS 39.8 5.1 0.00021 19.7 0.0 45 25-79 9-53 (207) 199 4rxn_A Rubredoxin; electron tr 39.8 5.5 0.00023 19.5 0.2 25 27-53 4-44 (54) 200 2cot_A Zinc finger protein 435 39.6 7.2 0.0003 18.6 0.8 38 27-64 19-65 (77) 201 1vco_A CTP synthetase; tetrame 39.4 18 0.00074 15.7 2.8 65 133-209 362-441 (550) 202 1yk4_A Rubredoxin, RD; electro 39.0 6.2 0.00026 19.1 0.4 25 27-53 3-43 (52) 203 2d74_B Translation initiation 38.6 3.2 0.00014 21.2 -1.1 34 25-58 103-138 (148) 204 1v54_F VI, cytochrome C oxidas 38.5 8.2 0.00035 18.2 1.0 17 42-58 76-92 (98) 205 3lp6_A Phosphoribosylaminoimid 38.4 16 0.00066 16.1 2.4 41 151-202 81-122 (174) 206 1nee_A EIF-2-beta, probable tr 38.3 2.3 9.5E-05 22.4 -1.9 34 25-58 101-136 (138) 207 3brs_A Periplasmic binding pro 38.3 19 0.00079 15.5 4.7 29 252-280 231-262 (289) 208 2nxw_A Phenyl-3-pyruvate decar 37.8 0.36 1.5E-05 28.3 -6.1 125 128-278 420-555 (565) 209 3n9n_A Putative uncharacterize 37.8 11 0.00045 17.4 1.4 33 23-55 55-95 (528) 210 2d9k_A FLN29 gene product; zin 37.7 7.1 0.0003 18.7 0.5 32 26-57 17-55 (75) 211 1wjp_A Zinc finger protein 295 37.4 19 0.00081 15.4 3.4 46 19-64 9-61 (107) 212 2zkr_z 60S ribosomal protein L 37.2 2.9 0.00012 21.6 -1.6 32 25-57 35-66 (92) 213 2h9a_B CO dehydrogenase/acetyl 37.0 11 0.00045 17.3 1.4 125 58-208 75-213 (310) 214 1nrw_A Hypothetical protein, h 37.0 16 0.00066 16.1 2.2 26 141-166 87-112 (288) 215 1uwc_A Feruloyl esterase A; hy 36.7 3 0.00013 21.4 -1.5 71 163-234 90-163 (261) 216 2owo_A DNA ligase; protein/DNA 36.5 6.7 0.00028 18.8 0.3 39 27-69 406-446 (671) 217 1to6_A Glycerate kinase; glyce 36.5 7 0.0003 18.7 0.3 19 181-199 297-315 (371) 218 2f9z_C Protein (chemotaxis met 36.2 20 0.00085 15.3 5.6 81 141-222 64-147 (159) 219 3eh2_A Protein transport prote 35.9 6.2 0.00026 19.1 -0.0 34 26-59 94-130 (766) 220 1gku_B Reverse gyrase, TOP-RG; 35.6 12 0.00052 16.9 1.5 46 27-77 582-630 (1054) 221 2egp_A Tripartite motif-contai 35.3 9.9 0.00042 17.6 1.0 32 19-59 7-38 (79) 222 2k4x_A 30S ribosomal protein S 35.0 3.4 0.00014 21.0 -1.5 31 25-56 17-47 (55) 223 1yn9_A BVP, polynucleotide 5'- 34.5 10 0.00043 17.5 0.9 66 127-194 82-155 (169) 224 2jtq_A Phage shock protein E; 34.5 21 0.0009 15.1 4.2 41 146-200 32-72 (85) 225 3cc2_Z 50S ribosomal protein L 34.3 4.5 0.00019 20.1 -0.9 33 24-57 58-90 (116) 226 2fiy_A Protein FDHE homolog; F 34.2 2.4 0.0001 22.2 -2.4 10 47-56 255-264 (309) 227 1xmp_A PURE, phosphoribosylami 33.7 17 0.00071 15.9 1.9 41 151-202 85-126 (170) 228 3ir9_A Peptide chain release f 33.6 9.9 0.00042 17.6 0.7 32 27-58 79-116 (166) 229 1yfu_A 3-hydroxyanthranilate-3 33.6 6.6 0.00028 18.9 -0.2 36 20-55 116-169 (174) 230 3h7h_A Transcription elongatio 33.6 12 0.00051 17.0 1.2 49 26-77 16-65 (120) 231 1x6h_A Transcriptional repress 33.5 18 0.00074 15.8 2.0 37 27-63 16-65 (86) 232 3g7n_A Lipase; hydrolase fold, 33.3 4.7 0.0002 20.0 -0.9 69 165-234 91-164 (258) 233 1yqw_A Periplasmic [NIFE] hydr 33.1 20 0.00084 15.3 2.2 16 195-210 107-122 (264) 234 2ri7_A Nucleosome-remodeling f 32.9 10 0.00042 17.6 0.7 32 21-52 18-57 (174) 235 1vq8_Z 50S ribosomal protein L 32.9 4.9 0.00021 19.9 -0.9 33 26-59 27-59 (83) 236 1u5k_A Hypothetical protein; O 32.6 8.5 0.00036 18.1 0.3 20 263-282 209-228 (244) 237 1kid_A Groel (HSP60 class); ch 32.4 23 0.00097 14.9 5.6 53 141-206 57-109 (203) 238 3ec1_A YQEH GTPase; atnos1, at 32.4 7.7 0.00032 18.4 0.0 26 27-52 5-43 (369) 239 1zvf_A 3-hydroxyanthranilate 3 32.3 5.2 0.00022 19.7 -0.9 36 21-56 119-172 (176) 240 2gru_A 2-deoxy-scyllo-inosose 32.3 23 0.00097 14.9 2.7 51 142-203 78-130 (368) 241 2h9a_A Carbon monoxide dehydro 31.6 20 0.00086 15.3 2.1 37 27-67 15-57 (445) 242 2f42_A STIP1 homology and U-bo 31.4 24 0.001 14.8 3.6 33 18-59 100-132 (179) 243 1q1a_A HST2 protein; ternary c 30.5 25 0.001 14.7 3.5 23 101-123 117-140 (289) 244 1x6e_A Zinc finger protein 24; 30.1 24 0.001 14.8 2.2 36 27-62 15-59 (72) 245 3mhs_E SAGA-associated factor 29.9 8.6 0.00036 18.0 -0.1 16 44-59 74-89 (96) 246 2x7j_A 2-succinyl-5-enolpyruvy 29.8 0.93 3.9E-05 25.2 -5.1 111 154-282 471-597 (604) 247 1ybh_A Acetolactate synthase, 29.7 22 0.00094 15.0 2.0 62 127-207 423-484 (590) 248 3glr_A NAD-dependent deacetyla 29.4 23 0.00095 14.9 2.0 24 100-123 119-143 (285) 249 1x5w_A Zinc finger protein 64, 29.4 17 0.00073 15.8 1.4 37 27-63 10-55 (70) 250 2i13_A AART; DNA binding, zinc 29.2 21 0.00089 15.2 1.8 34 27-60 22-64 (190) 251 1qxf_A GR2, 30S ribosomal prot 29.2 7.7 0.00032 18.4 -0.4 29 27-55 8-36 (66) 252 2kgg_A Histone demethylase jar 28.8 26 0.0011 14.5 3.4 32 21-52 13-52 (52) 253 2ory_A Lipase; alpha/beta hydr 28.7 5 0.00021 19.8 -1.5 16 198-213 168-183 (346) 254 1wui_S Periplasmic [NIFE] hydr 28.6 27 0.0011 14.4 5.9 25 186-210 98-122 (267) 255 1m2k_A Silent information regu 28.5 13 0.00053 16.8 0.6 16 190-205 201-216 (249) 256 2qjw_A Uncharacterized protein 28.3 8.3 0.00035 18.2 -0.4 131 120-270 4-140 (176) 257 3fzq_A Putative hydrolase; YP_ 28.1 15 0.00064 16.2 0.9 11 249-259 264-274 (274) 258 3ce9_A Glycerol dehydrogenase; 28.0 25 0.0011 14.6 2.0 54 49-106 3-62 (354) 259 3efo_B SEC24 related gene fami 27.7 15 0.00062 16.3 0.8 34 26-59 98-134 (770) 260 1muw_A Xylose isomerase; atomi 27.7 27 0.0012 14.3 7.0 89 92-190 69-168 (386) 261 2k5r_A Uncharacterized protein 27.6 12 0.00049 17.1 0.2 14 44-57 52-65 (97) 262 3iv7_A Alcohol dehydrogenase I 27.4 28 0.0012 14.3 8.1 52 139-204 72-123 (364) 263 3ag6_A Pantothenate synthetase 27.4 28 0.0012 14.3 5.3 45 153-207 20-64 (283) 264 3lpe_B DNA-directed RNA polyme 27.3 19 0.00078 15.6 1.2 19 27-52 2-20 (59) 265 3guz_A Pantothenate synthetase 27.0 28 0.0012 14.2 6.3 72 151-232 17-94 (176) 266 3jyw_9 60S ribosomal protein L 26.8 9.2 0.00038 17.9 -0.4 32 24-56 24-55 (72) 267 2yur_A Retinoblastoma-binding 26.6 27 0.0011 14.4 1.9 38 17-62 8-45 (74) 268 2zkr_2 60S ribosomal protein L 26.5 27 0.0011 14.4 1.9 78 14-136 6-83 (97) 269 2odx_A Cytochrome C oxidase po 26.4 17 0.00071 15.9 0.9 34 25-58 32-69 (80) 270 1vq8_1 50S ribosomal protein L 26.3 20 0.00085 15.3 1.3 33 15-53 8-40 (57) 271 1srv_A Protein (groel (HSP60 c 26.2 29 0.0012 14.1 5.4 66 141-221 39-104 (145) 272 2yt9_A Zinc finger-containing 26.2 25 0.001 14.6 1.7 35 27-61 8-51 (95) 273 1rqg_A Methionyl-tRNA syntheta 25.8 13 0.00053 16.8 0.2 23 29-54 127-149 (722) 274 2k1p_A Zinc finger RAN-binding 25.7 17 0.00073 15.8 0.9 26 22-53 3-28 (33) 275 3h2y_A GTPase family protein; 25.6 12 0.0005 17.0 0.0 27 27-53 5-42 (368) 276 2qpz_A Naphthalene 1,2-dioxyge 25.3 10 0.00043 17.5 -0.4 31 27-57 42-72 (103) 277 1ffk_W Ribosomal protein L37AE 25.2 7.3 0.00031 18.6 -1.2 35 24-59 25-59 (73) 278 2ghf_A ZHX1, zinc fingers and 24.6 21 0.00088 15.2 1.1 38 27-64 19-69 (102) 279 3jyw_Y 60S ribosomal protein L 24.5 22 0.00091 15.1 1.2 25 26-54 15-39 (52) 280 2d9h_A Zinc finger protein 692 24.4 26 0.0011 14.4 1.6 37 27-63 8-56 (78) 281 1ohe_A CDC14B, CDC14B2 phospha 24.1 26 0.0011 14.4 1.5 18 216-233 176-193 (348) 282 1rlm_A Phosphatase; HAD family 23.9 32 0.0013 13.8 2.4 16 22-38 59-74 (271) 283 1twf_L ABC10-alpha, DNA-direct 23.5 29 0.0012 14.1 1.7 31 22-54 24-54 (70) 284 3g1w_A Sugar ABC transporter; 23.3 33 0.0014 13.8 7.2 28 252-279 228-258 (305) 285 2ecw_A Tripartite motif-contai 23.1 9.5 0.0004 17.7 -0.9 32 20-60 15-46 (85) 286 2hc8_A PACS, cation-transporti 23.1 19 0.00079 15.5 0.6 95 185-280 2-109 (113) 287 2qy9_A Cell division protein F 23.0 33 0.0014 13.7 5.1 88 117-207 125-231 (309) 288 2fnf_X Putative RAS effector N 22.9 23 0.00097 14.9 1.0 24 27-55 36-59 (72) 289 2jz8_A Uncharacterized protein 22.8 15 0.00065 16.2 0.1 33 27-59 25-62 (87) 290 1jq5_A Glycerol dehydrogenase; 22.7 33 0.0014 13.7 6.3 58 142-213 73-130 (370) 291 2csh_A Zinc finger protein 297 22.7 28 0.0012 14.2 1.5 14 46-59 38-51 (110) 292 1wem_A Death associated transc 22.7 19 0.00082 15.4 0.6 30 22-51 26-67 (76) 293 3bfj_A 1,3-propanediol oxidore 22.5 34 0.0014 13.7 4.5 113 65-207 14-148 (387) 294 3htk_C E3 SUMO-protein ligase 22.3 16 0.00069 16.0 0.2 34 27-69 182-215 (267) 295 3cov_A Pantothenate synthetase 22.2 34 0.0014 13.6 2.5 69 131-208 7-76 (301) 296 3lkb_A Probable branched-chain 22.1 34 0.0014 13.6 6.0 13 119-131 143-155 (392) 297 1mpp_A Pepsin; hydrolase(acid 22.0 31 0.0013 13.9 1.6 21 22-55 41-61 (361) 298 2row_A RHO-associated protein 22.0 35 0.0015 13.6 3.2 28 27-54 55-82 (84) 299 2avu_E Flagellar transcription 21.8 14 0.00058 16.5 -0.3 27 129-155 80-106 (192) 300 3kv4_A PHD finger protein 8; e 21.6 11 0.00046 17.3 -0.8 31 22-52 16-54 (447) 301 1lv3_A Hypothetical protein YA 21.6 34 0.0014 13.6 1.7 15 23-37 6-20 (68) 302 3kv5_D JMJC domain-containing 21.6 20 0.00083 15.4 0.5 31 22-52 48-86 (488) 303 1rfh_A RAS association (ralgds 21.5 33 0.0014 13.8 1.6 25 27-56 23-47 (59) 304 2kmk_A Zinc finger protein GFI 21.3 30 0.0013 14.0 1.4 13 45-57 57-69 (82) 305 1vlj_A NADH-dependent butanol 21.3 36 0.0015 13.5 5.5 120 64-213 23-163 (407) 306 1ad1_A DHPS, dihydropteroate s 21.3 36 0.0015 13.5 4.7 125 146-273 112-250 (266) 307 1w77_A 2C-methyl-D-erythritol 21.3 34 0.0014 13.6 1.6 17 240-256 210-226 (228) 308 2i2w_A Phosphoheptose isomeras 21.2 36 0.0015 13.5 6.8 64 144-224 121-184 (212) 309 1ard_A Yeast transcription fac 21.1 26 0.0011 14.5 1.0 18 45-62 2-19 (29) 310 2nys_A AGR_C_3712P; SSPB, stri 21.1 36 0.0015 13.5 2.8 29 207-235 83-111 (176) 311 3dfx_A Trans-acting T-cell-spe 20.7 2.7 0.00011 21.8 -4.1 32 27-59 8-42 (63) 312 1ryq_A DNA-directed RNA polyme 20.5 20 0.00086 15.3 0.4 20 27-53 12-31 (69) 313 2jvx_A NF-kappa-B essential mo 20.3 21 0.00088 15.2 0.4 12 45-56 3-14 (28) 314 3mhs_A Ubiquitin carboxyl-term 20.3 15 0.00063 16.3 -0.4 27 26-57 48-74 (476) 315 1o1x_A Ribose-5-phosphate isom 20.2 19 0.00078 15.6 0.1 53 70-125 37-98 (155) 316 2hmc_A AGR_L_411P, dihydrodipi 20.2 37 0.0016 13.3 3.9 18 145-162 82-99 (344) No 1 >2f9i_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus} Probab=100.00 E-value=0 Score=717.22 Aligned_cols=281 Identities=38% Similarity=0.688 Sum_probs=271.5 Q ss_pred CCCCHHHCCCCCC--CCCCCCCCCCCCCEECCCCCCEEEHHHHHHHCCCCCCCCCCEECCHHHHHHHHCCCCCCCCCCCC Q ss_conf 9620110242234--45422247746010566768722178898633838899896243799999984556542013345 Q gi|254780820|r 1 MNWITNFVRPRIN--SVFGRRAIPENLWVKCPETGAMVYHKDLKENQWVISSSDFHMKIPAKERLKFLFDNAKYCLLDQP 78 (284) Q Consensus 1 MnW~~~~~k~k~~--~~~~kk~ip~~lW~kCp~C~~~i~~~~l~~n~~VCp~C~~H~rl~areRi~~l~D~gsf~Ei~~~ 78 (284) ||||+|..|++.. ...+|+++|+|||+|||+|++++|++||++|++|||+|||||||+|||||++|||+|||+|++.+ T Consensus 3 ~~~f~~~~k~~~~~~~~~~k~~~p~~lW~kCp~C~~~i~~~dl~~n~~VCp~C~~H~rl~areRi~~L~D~gsf~Ei~~~ 82 (285) T 2f9i_B 3 KDFFNRTKKKKYLTVQDSKNNDVPAGIMTKCPKCKKIMYTKELAENLNVCFNCDHHIALTAYKRIEAISDEGSFTEFDKG 82 (285) T ss_dssp -----------------------CCSSEEECTTTCCEEEHHHHHHTTTBCTTTCCBCCCCHHHHHHHTSCTTCCEEESTT T ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCEEEECCC T ss_conf 78750023566666665344789998630288887313299999848889099799865999999998089964981476 Q ss_pred CCCCHHCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEEEECEEEEEEEEECHHHCCCCCHHHHHHHHHHHHHHHHHCCCE Q ss_conf 68702018676420356677666421667716999878704149999983303185357789999999999998628968 Q gi|254780820|r 79 QVCQDPLKFRDNKKYIDRLKENRSKTGLIDSIVSAVGNVRDFKLVAVVHEFSFIGGSIGIAAGEAIVKSCERAIAEKCPL 158 (284) Q Consensus 79 ~~~~DPL~F~d~k~Y~drl~~a~~kTg~~davv~G~G~I~G~~vvv~~~df~F~GGSmG~~~geki~~a~e~A~~~~~Pl 158 (284) +.+.|||+| ++|++|++++++|||++|||++|.|+|+|++|+++++||+|+|||||+++||||+|++|+|+++++|+ T Consensus 83 ~~~~DpL~f---~~Y~~rl~~a~~ktg~~d~vi~g~G~i~g~~v~v~~~Df~f~GGS~g~~~geki~ra~e~A~~~~lP~ 159 (285) T 2f9i_B 83 MTSANPLDF---PSYLEKIEKDQQKTGLKEAVVTGTAQLDGMKFGVAVMDSRFRMGSMGSVIGEKICRIIDYCTENRLPF 159 (285) T ss_dssp CEECCTTCC---TTHHHHHHHHHHHHCCSSSEEEEEEEETTEEEEEEEECTTTGGGCCCHHHHHHHHHHHHHHHHTTCCE T ss_pred CCCCCCCCC---CCCCCCHHHHHHCCCCCCEEEEEEEEECCEEEEEEEEHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCE T ss_conf 567885554---33123227788524988649999999999998865302441578178889899999999998518976 Q ss_pred EEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCCEEEEECCCEEECCCHHHHHHH Q ss_conf 99976888776521246777788999999998629988998567642011112014685255531421102327887876 Q gi|254780820|r 159 VMFTASGGARMQEGILSLMQLPRTTIAINMLKDAGLPYIVVLTNPTTGGVTASYAMLGDIHLAEPGAEIGFAGRRVIEQT 238 (284) Q Consensus 159 I~~~~SGGaRMqEG~~sL~qMakt~~a~~~l~~~~lP~I~vl~~pt~GGv~AS~a~lgDiiiaep~a~igFaG~rVi~~t 238 (284) |.|++|||||||||+.|||||++++.|+++++++|+|||+++++||+||++|||++++||+|+||+|+||||||||||+| T Consensus 160 I~~~~SGGaRmqeg~~sl~~~~~~~~a~~~~~~~gip~I~v~~~p~~GG~~as~a~~~diii~e~~a~i~faGPrVi~~~ 239 (285) T 2f9i_B 160 ILFSASGGARMQEGIISLMQMGKTSVSLKRHSDAGLLYISYLTHPTTGGVSASFASVGDINLSEPKALIGFAGRRVIEQT 239 (285) T ss_dssp EEEEEECSCCGGGHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEEHHHHTTGGGCCSEEEECTTCBEESSCHHHHHHH T ss_pred EEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCEEEEECCEEEEEECHHHHHHH T ss_conf 99815878184763310455529999999998689976999838845003212231774899857718998787578786 Q ss_pred HCCCCCCCCHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHCCCC Q ss_conf 3677887202159999689835373589999999999999723789 Q gi|254780820|r 239 VREKLPDGFQRSEYLVEHGMIDRIVHRHDIPEVVSSLCKILTKSVQ 284 (284) Q Consensus 239 ~~~~lp~~fqtae~l~~~G~iD~iv~r~~l~~~i~~ll~il~~~~~ 284 (284) +||++|++||+||++++||+||.||+|+|+|++|++||+++.+.++ T Consensus 240 ~ge~~pe~f~~a~~~~~~G~iD~vv~r~e~r~~l~~ll~~~~~~~k 285 (285) T 2f9i_B 240 INEKLPDDFQTAEFLLEHGQLDKVVHRNDMRQTLSEILKIHQEVTK 285 (285) T ss_dssp HTSCCCTTTTBHHHHHHTTCCSEECCGGGHHHHHHHHHHHTCCSCC T ss_pred HCCCCCCCCCCHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHHCCC T ss_conf 1898982323458899667867687679999999999996655369 No 2 >2f9y_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4 Probab=100.00 E-value=0 Score=692.92 Aligned_cols=280 Identities=46% Similarity=0.805 Sum_probs=272.9 Q ss_pred CCCCHHHCCCCCCCCCCCCCCCCCCCEECCCCCCEEEHHHHHHHCCCCCCCCCCEECCHHHHHHHHCCCCCCCCCCCCCC Q ss_conf 96201102422344542224774601056676872217889863383889989624379999998455654201334568 Q gi|254780820|r 1 MNWITNFVRPRINSVFGRRAIPENLWVKCPETGAMVYHKDLKENQWVISSSDFHMKIPAKERLKFLFDNAKYCLLDQPQV 80 (284) Q Consensus 1 MnW~~~~~k~k~~~~~~kk~ip~~lW~kCp~C~~~i~~~~l~~n~~VCp~C~~H~rl~areRi~~l~D~gsf~Ei~~~~~ 80 (284) ||||+| +|++++. .+|+++|||||+|||+|++++|++||++|+||||+|||||||+|||||++|||+|||+|++.++. T Consensus 1 M~W~~~-~k~~~~~-~~k~~~p~~lW~kC~~C~~~~~~~~l~~n~~vCp~C~~H~ri~areRi~~l~D~gsf~E~~~~~~ 78 (304) T 2f9y_B 1 MSWIER-IKSNITP-TRKASIPEGVWTKCDSCGQVLYRAELERNLEVCPKCDHHMRMTARNRLHSLLDEGSLVELGSELE 78 (304) T ss_dssp ------------------------CEECCTTTCCCEETTHHHHTTTBCTTTCCBCCCCHHHHHHHHSCSSCCEECSCSCC T ss_pred CCCCCC-CCCCCCC-CCCCCCCCCCCCCCCCCCCEEEHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCEEECCCCCC T ss_conf 985312-3445777-54265888762138787763159999984889949989875499999987624983787678767 Q ss_pred CCHHCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEEEECEEEEEEEEECHHHCCCCCHHHHHHHHHHHHHHHHHCCCEEE Q ss_conf 70201867642035667766642166771699987870414999998330318535778999999999999862896899 Q gi|254780820|r 81 CQDPLKFRDNKKYIDRLKENRSKTGLIDSIVSAVGNVRDFKLVAVVHEFSFIGGSIGIAAGEAIVKSCERAIAEKCPLVM 160 (284) Q Consensus 81 ~~DPL~F~d~k~Y~drl~~a~~kTg~~davv~G~G~I~G~~vvv~~~df~F~GGSmG~~~geki~~a~e~A~~~~~PlI~ 160 (284) +.|||+|+|+++|.||+++++++||++|||++|.|+|+|++|+++++||+|+|||||.++||||.|++|+|+++++|+|. T Consensus 79 ~~dpl~f~d~~~y~~~l~~~~~~tg~~d~vv~g~G~I~g~~v~v~a~Dft~~GGS~g~~~geKi~ra~e~A~~~~lPlI~ 158 (304) T 2f9y_B 79 PKDVLKFRDSKKYKDRLASAQKETGEKDALVVMKGTLYGMPVVAAAFEFAFMGGSMGSVVGARFVRAVEQALEDNCPLIC 158 (304) T ss_dssp CCCSSCCSSGGGTC------CCSSCCSSSEEEEECEETTEECBEEEECTTSTTTCBCTHHHHHHHHHHHHHHHHTCCEEE T ss_pred CCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEEECCEEEEEEEECCHHHCCCCCHHHHHHHHHHHHHHHHCCCCEEE T ss_conf 77854565455550668765314488772499999999988899997362322433244445633599999972997699 Q ss_pred EECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCCEEEEECCCEEECCCHHHHHHHHC Q ss_conf 97688877652124677778899999999862998899856764201111201468525553142110232788787636 Q gi|254780820|r 161 FTASGGARMQEGILSLMQLPRTTIAINMLKDAGLPYIVVLTNPTTGGVTASYAMLGDIHLAEPGAEIGFAGRRVIEQTVR 240 (284) Q Consensus 161 ~~~SGGaRMqEG~~sL~qMakt~~a~~~l~~~~lP~I~vl~~pt~GGv~AS~a~lgDiiiaep~a~igFaG~rVi~~t~~ 240 (284) +.+|||+|||||+.|||||+++..++.+++++++|||+|+++||+||++||||+++|++|+||+|+||||||||||+++| T Consensus 159 l~~SgGaRm~eg~~sl~~~~~~~~~~~~~~~~~iP~I~v~~gp~~GG~~as~a~~~d~ii~~~~a~i~~aGP~Vv~~~~g 238 (304) T 2f9y_B 159 FSASGGARMQEALMSLMQMAKTSAALAKMQERGLPYISVLTDPTMGGVSASFAMLGDLNIAEPKALIGFAGPRVIEQTVR 238 (304) T ss_dssp EEEESSBCGGGTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEEHHHHTTGGGCCSEEEECTTCBEESSCHHHHHHHHT T ss_pred EECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHCC T ss_conf 84588803555552000246799999999818997799966896613412636477489995540003658666654307 Q ss_pred CCCCCCCHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHCC Q ss_conf 778872021599996898353735899999999999997237 Q gi|254780820|r 241 EKLPDGFQRSEYLVEHGMIDRIVHRHDIPEVVSSLCKILTKS 282 (284) Q Consensus 241 ~~lp~~fqtae~l~~~G~iD~iv~r~~l~~~i~~ll~il~~~ 282 (284) |++|++||+||++++||+||.||+|+|++.+|++++++|+.- T Consensus 239 e~l~e~~g~a~~~~~~G~vD~vv~~~e~a~~l~~~l~~L~~l 280 (304) T 2f9y_B 239 EKLPPGFQRSEFLIEKGAIDMIVRRPEMRLKLASILAKLMNL 280 (304) T ss_dssp SCCCTTTTBHHHHGGGTCCSEECCHHHHHHHHHHHHHHHTTC T ss_pred CCCCHHHCCHHHHHHCCCCEEEECCHHHHHHHHHHHHHHCCC T ss_conf 738822103799986767108979889999999999997248 No 3 >2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid biosynthesis, accase, ligase, transferase; 2.2A {Mycobacterium tuberculosis} PDB: 2a7s_A Probab=100.00 E-value=4.1e-42 Score=331.00 Aligned_cols=212 Identities=25% Similarity=0.329 Sum_probs=185.5 Q ss_pred ECCHHHHHHHHCCCCCCCCCCCCCCCCHHCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEEEECEEEEEEEEECHHHCCC Q ss_conf 43799999984556542013345687020186764203566776664216677169998787041499999833031853 Q gi|254780820|r 56 KIPAKERLKFLFDNAKYCLLDQPQVCQDPLKFRDNKKYIDRLKENRSKTGLIDSIVSAVGNVRDFKLVAVVHEFSFIGGS 135 (284) Q Consensus 56 rl~areRi~~l~D~gsf~Ei~~~~~~~DPL~F~d~k~Y~drl~~a~~kTg~~davv~G~G~I~G~~vvv~~~df~F~GGS 135 (284) +|++||||++|+|+|||.|++.-. .|........+++...|+||+|+|+|+|++|+++++||+|+||| T Consensus 56 kltaRERI~~LlD~gSF~E~g~la------------~~~~~~~~~~~~~~~~dgvV~G~G~I~Gr~vvv~a~D~tv~gGS 123 (548) T 2bzr_A 56 KLTARERIYALLDEDSFVELDALA------------KHRSTNFNLGEKRPLGDGVVTGYGTIDGRDVCIFSQDATVFGGS 123 (548) T ss_dssp CCCHHHHHHHHSCTTCCEEESTTC------------CCCCCSTTGGGCCCTTTTEEEEEEEETTEEEEEEEECTTSGGGC T ss_pred CCCHHHHHHHHCCCCCCEECHHHC------------CCCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEECCCCCCCC T ss_conf 999999999860899864841010------------75666646444568887599999999999999999878770668 Q ss_pred CCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCC Q ss_conf 57789999999999998628968999768887765212467777889999999986299889985676420111120146 Q gi|254780820|r 136 IGIAAGEAIVKSCERAIAEKCPLVMFTASGGARMQEGILSLMQLPRTTIAINMLKDAGLPYIVVLTNPTTGGVTASYAML 215 (284) Q Consensus 136 mG~~~geki~~a~e~A~~~~~PlI~~~~SGGaRMqEG~~sL~qMakt~~a~~~l~~~~lP~I~vl~~pt~GGv~AS~a~l 215 (284) +|.++++|+.|+.|+|.++++|+|.+.+|||+|||||+.+|+||+++..+. .+...++|+|+++++||+||.++++++. T Consensus 124 ~g~~~~~Ki~r~~elA~~~~lP~V~l~dSgGarlqeg~~~l~~~~~~~~~~-~~~s~~iP~Isvv~Gp~~gG~a~~~a~~ 202 (548) T 2bzr_A 124 LGEVYGEKIVKVQELAIKTGRPLIGINDGAGARIQEGVVSLGLYSRIFRNN-ILASGVIPQISLIMGAAAGGHVYSPALT 202 (548) T ss_dssp CCHHHHHHHHHHHHHHHHHTCCEEEEECCCSCCGGGTTHHHHHHHHHHHHH-HHTTTTSCEEEEECSEEESGGGHHHHHS T ss_pred CCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEECCCCHHHHHHHH-HHHCCCCCEEEEECCCCCCCCEEEHHHC T ss_conf 478899999999999997199879996157755665400143205899999-9975899779996278764413223338 Q ss_pred CCEEEEECCCEEECCCHHHHHHHHCCCCC-CCCHHHHHH-HHCCCCCEEECHH-HHHHHHHHHHHHHH Q ss_conf 85255531421102327887876367788-720215999-9689835373589-99999999999972 Q gi|254780820|r 216 GDIHLAEPGAEIGFAGRRVIEQTVREKLP-DGFQRSEYL-VEHGMIDRIVHRH-DIPEVVSSLCKILT 280 (284) Q Consensus 216 gDiiiaep~a~igFaG~rVi~~t~~~~lp-~~fqtae~l-~~~G~iD~iv~r~-~l~~~i~~ll~il~ 280 (284) +++|+++++++|+|+||+||++.+||++. ++.+.++.+ .++|.+|.+++.. +--+.+-++|+.|- T Consensus 203 d~vIm~~~~a~i~~aGP~vv~~atge~~~~eelGga~~h~~~sG~~d~~~~de~~a~~~~r~~ls~lp 270 (548) T 2bzr_A 203 DFVIMVDQTSQMFITGPDVIKTVTGEEVTMEELGGAHTHMAKSGTAHYAASGEQDAFDYVRELLSYLP 270 (548) T ss_dssp SEEEEETTTCEEESSCHHHHHHHHCCCCCHHHHHBHHHHHHTSSCCSEEESSHHHHHHHHHHHHTTSC T ss_pred CEEEEEECCCEEEECCHHHHHHHHCCCCCHHHHCCHHEEEECCCCCCCCCCCHHHHHHHHHHHHHHCC T ss_conf 64899714633650478899997478768566067102640466556877999999999999985357 No 4 >3iav_A Propionyl-COA carboxylase complex B subunit; accase, pccase, ACC, PCC, CT, carboxyltransfe polyketide, fatty acid, PKS, FAS; 1.75A {Streptomyces coelicolor} PDB: 1xnw_A 3ib9_A* 3ibb_A 1xny_A* 1xnv_A* 1xo6_A Probab=100.00 E-value=1.1e-41 Score=327.84 Aligned_cols=229 Identities=24% Similarity=0.359 Sum_probs=193.7 Q ss_pred HHHHHHCCCCCCCC-------CCE--ECCHHHHHHHHCCCCCCCCCCCCCCCCHHCCCCCCCCHHHHHHHHHHHCCCCCC Q ss_conf 88986338388998-------962--437999999845565420133456870201867642035667766642166771 Q gi|254780820|r 39 KDLKENQWVISSSD-------FHM--KIPAKERLKFLFDNAKYCLLDQPQVCQDPLKFRDNKKYIDRLKENRSKTGLIDS 109 (284) Q Consensus 39 ~~l~~n~~VCp~C~-------~H~--rl~areRi~~l~D~gsf~Ei~~~~~~~DPL~F~d~k~Y~drl~~a~~kTg~~da 109 (284) .||++...-+..+| +|- ||+|||||++|||+|||.|++. |.+.+.|.+. .+.++...|+ T Consensus 19 ~el~~r~~~~~~~g~~~~~~~~~~~gkltaReRi~~LlD~gSF~E~g~---------~a~~~~~~~~---~~~~~~~~dg 86 (530) T 3iav_A 19 ADLRRRIEEATHAGSARAVEKQHAKGKLTARERIDLLLDEGSFVELDE---------FARHRSTNFG---LDANRPYGDG 86 (530) T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHTTCCCHHHHHHHHSCTTCCEEEST---------TCCCCCCGGG---GGGCCCTTTT T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHCCCCCCEECHH---------HHCCCCCCCC---CCCCCCCCCE T ss_conf 999999999987189999999997599999999999628998758753---------3275764322---0016688975 Q ss_pred EEEEEEEEECEEEEEEEEECHHHCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 69998787041499999833031853577899999999999986289689997688877652124677778899999999 Q gi|254780820|r 110 IVSAVGNVRDFKLVAVVHEFSFIGGSIGIAAGEAIVKSCERAIAEKCPLVMFTASGGARMQEGILSLMQLPRTTIAINML 189 (284) Q Consensus 110 vv~G~G~I~G~~vvv~~~df~F~GGSmG~~~geki~~a~e~A~~~~~PlI~~~~SGGaRMqEG~~sL~qMakt~~a~~~l 189 (284) +|+|+|+|+|++|+++++||+|+|||+|.++++|+.++.++|.++++|+|.+.+|||+|||||+.+|++|.++...+.++ T Consensus 87 vV~G~G~I~Gr~v~v~a~Dftv~gGS~g~~~~~K~~r~~~~A~~~~lP~V~l~~sgGar~~e~~~~~~~~~~~~~~~~~~ 166 (530) T 3iav_A 87 VVTGYGTVDGRPVAVFSQDFTVFGGALGEVYGQKIVKVMDFALKTGCPVVGINDSGGARIQEGVASLGAYGEIFRRNTHA 166 (530) T ss_dssp EEEEEEEETTEEEEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHHTCCEEEEECCCSBCGGGTHHHHHHHHHHHHHHHHT T ss_pred EEEEEEEECCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHH T ss_conf 99999999999999999868642408788898999899999986599989995268877665644455530799999986 Q ss_pred HHCCCCEEEEECCCCCCEEEEEECCCCCEEEEECCCEEECCCHHHHHHHHCCCCC-CCCHHHHHHH-HCCCCCEEECH-H Q ss_conf 8629988998567642011112014685255531421102327887876367788-7202159999-68983537358-9 Q gi|254780820|r 190 KDAGLPYIVVLTNPTTGGVTASYAMLGDIHLAEPGAEIGFAGRRVIEQTVREKLP-DGFQRSEYLV-EHGMIDRIVHR-H 266 (284) Q Consensus 190 ~~~~lP~I~vl~~pt~GGv~AS~a~lgDiiiaep~a~igFaG~rVi~~t~~~~lp-~~fqtae~l~-~~G~iD~iv~r-~ 266 (284) + .++|+|+++++||+||.++++++.+++++++++++|+|+||+||++++||++. ++...++.+. ..|.+|.+++. . T Consensus 167 s-~~iP~isvv~G~~~gG~A~~~~~~d~~im~~~~a~i~~aGP~vV~~atge~~~~eelGg~~~h~~~sG~~d~~~~de~ 245 (530) T 3iav_A 167 S-GVIPQISLVVGPCAGGAVYSPAITDFTVMVDQTSHMFITGPDVIKTVTGEDVGFEELGGARTHNSTSGVAHHMAGDEK 245 (530) T ss_dssp T-TTSCEEEEECSEEEGGGGHHHHHSSEEEEETTTCEEESSCHHHHHHHHCCCCCHHHHHBHHHHHHTSCCCSEEESSHH T ss_pred C-CCCCEEEEEECCCCCCHHHHHHHCCEEEEECCCCEEEECCHHHHHHHCCCCCCHHHCCCHHHEEECCCCCCCCCCCHH T ss_conf 5-899889996268762454404537716985167508723748889752788881221551221213674320157678 Q ss_pred HHHHHHHHHHHHHH Q ss_conf 99999999999972 Q gi|254780820|r 267 DIPEVVSSLCKILT 280 (284) Q Consensus 267 ~l~~~i~~ll~il~ 280 (284) +--+.+-.+|+.|- T Consensus 246 ~a~~~~r~~ls~lp 259 (530) T 3iav_A 246 DAVEYVKQLLSYLP 259 (530) T ss_dssp HHHHHHHHHHHHSC T ss_pred HHHHHHHHHHHHCC T ss_conf 89999999998665 No 5 >3n6r_B Propionyl-COA carboxylase, beta subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Roseobacter denitrificans och 114} Probab=100.00 E-value=1.2e-41 Score=327.55 Aligned_cols=212 Identities=21% Similarity=0.305 Sum_probs=182.7 Q ss_pred ECCHHHHHHHHCCCCCCCCCCCCCCCCHHCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEEEECEEEEEEEEECHHHCCC Q ss_conf 43799999984556542013345687020186764203566776664216677169998787041499999833031853 Q gi|254780820|r 56 KIPAKERLKFLFDNAKYCLLDQPQVCQDPLKFRDNKKYIDRLKENRSKTGLIDSIVSAVGNVRDFKLVAVVHEFSFIGGS 135 (284) Q Consensus 56 rl~areRi~~l~D~gsf~Ei~~~~~~~DPL~F~d~k~Y~drl~~a~~kTg~~davv~G~G~I~G~~vvv~~~df~F~GGS 135 (284) ||+|||||++|||+|||.|++.... .+.|.. ..+.++...|+||+|.|+|+|++|+++++||+|+||| T Consensus 53 kltaRERI~~LlD~gSF~E~g~l~~---------~~~~d~---~~~~~~~~~dgvV~G~G~I~Gr~v~v~a~Dftv~GGS 120 (531) T 3n6r_B 53 KLTARERVDLLLDEGSFEEFDMFVT---------HRCTDF---NMQDQKPAGDGVVTGWGTINGRVVYVFSQDFTVLGGS 120 (531) T ss_dssp CCCHHHHHHHHSSSSCCEEECTTCC---------CCCCGG---GGGGCCCTTTTEEEEEEEETTEEEEEEEECTTSGGGC T ss_pred CCCHHHHHHHHCCCCCCEECHHHHC---------CCCCCC---CCCCCCCCCCEEEEEEEEECCEEEEEEEECCCEECCC T ss_conf 9999999999718998703513435---------466665---5334677897399999999999999999868763307 Q ss_pred CCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCC Q ss_conf 57789999999999998628968999768887765212467777889999999986299889985676420111120146 Q gi|254780820|r 136 IGIAAGEAIVKSCERAIAEKCPLVMFTASGGARMQEGILSLMQLPRTTIAINMLKDAGLPYIVVLTNPTTGGVTASYAML 215 (284) Q Consensus 136 mG~~~geki~~a~e~A~~~~~PlI~~~~SGGaRMqEG~~sL~qMakt~~a~~~l~~~~lP~I~vl~~pt~GGv~AS~a~l 215 (284) ||.++++|+.++.|+|.++++|+|.+.+|||+|||||+.+|+||+++.....++ ..++|+|+++++||+||.++++++. T Consensus 121 ~g~~~~~K~~ra~e~A~~~~lPlV~l~dsgGarl~eg~~~l~~~~~~~~~~~~~-s~~iP~Isvv~Gp~~Gg~A~~~a~s 199 (531) T 3n6r_B 121 VSETHSKKICKIMDMAMQNGAPVIGINDSGGARIQEGVDSLAGYGEVFQRNIMA-SGVVPQISMIMGPCAGGAVYSPAMT 199 (531) T ss_dssp BCHHHHHHHHHHHHHHHHHTCCEEEEECCCCBCGGGTHHHHHHHHHHHHHHHHT-TTTSCEEEEECSCCBGGGGHHHHHS T ss_pred CCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHH-CCCCCEEEEEECCCCHHHHHHHHHC T ss_conf 887788999999999998499879961478877554522234424899999986-6899889998168750887337668 Q ss_pred CCEEEEECCCEEECCCHHHHHHHHCCCCC-CCCHHHHHHHH-CCCCCEEEC-HHHHHHHHHHHHHHHH Q ss_conf 85255531421102327887876367788-72021599996-898353735-8999999999999972 Q gi|254780820|r 216 GDIHLAEPGAEIGFAGRRVIEQTVREKLP-DGFQRSEYLVE-HGMIDRIVH-RHDIPEVVSSLCKILT 280 (284) Q Consensus 216 gDiiiaep~a~igFaG~rVi~~t~~~~lp-~~fqtae~l~~-~G~iD~iv~-r~~l~~~i~~ll~il~ 280 (284) +++++++++++|+|+||+||++.++|+++ ++.+.++.+.. .|.+|.+++ ..+.-+.+-++|+.|- T Consensus 200 d~vim~~~~a~if~aGP~vV~~a~ge~~~~eelGGa~~h~~~sGv~d~~~~de~ea~~~~r~~ls~lp 267 (531) T 3n6r_B 200 DFIFMVKDSSYMFVTGPDVVKTVTNEQVSAEELGGATTHTRKSSVADAAFENDVEALAEVRRLVDFLP 267 (531) T ss_dssp SEEEEETTTCBCBSSCHHHHHHHHCCCCCHHHHHBHHHHHHTTSCCSEEESSHHHHHHHHHHHHTTSC T ss_pred CEEEEEECCEEEEECCHHHHHHCCCCCCCHHHCCCHHHHHCCCCCCEEEECCHHHHHHHHHHHHHHCC T ss_conf 75899716604883360665300025669477144766420246423662672899999999865335 No 6 >1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain duplication, multienzyme complex, transcarboxylase; HET: MCA; 1.90A {Propionibacterium freudenreichii} SCOP: c.14.1.4 c.14.1.4 PDB: 1on9_A* Probab=100.00 E-value=8e-42 Score=328.85 Aligned_cols=210 Identities=28% Similarity=0.386 Sum_probs=187.0 Q ss_pred ECCHHHHHHHHCCCCCCCCCCCCCCCCHHCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEEEECEEEEEEEEECHHHCCC Q ss_conf 43799999984556542013345687020186764203566776664216677169998787041499999833031853 Q gi|254780820|r 56 KIPAKERLKFLFDNAKYCLLDQPQVCQDPLKFRDNKKYIDRLKENRSKTGLIDSIVSAVGNVRDFKLVAVVHEFSFIGGS 135 (284) Q Consensus 56 rl~areRi~~l~D~gsf~Ei~~~~~~~DPL~F~d~k~Y~drl~~a~~kTg~~davv~G~G~I~G~~vvv~~~df~F~GGS 135 (284) +++|||||++|+|+|||.|++.- . .|.+.+....+++...|+||+|+|+|+|++|+++++||+|+||| T Consensus 43 kltaReRI~~LlD~gSF~E~g~~---------~---~~~~~~~~~~~~~~~~dgvv~G~G~I~Gr~v~v~a~D~tv~gGs 110 (523) T 1on3_A 43 KQTARERLNNLLDPHSFDEVGAF---------R---KHRTTLFGMDKAVVPADGVVTGRGTILGRPVHAASQDFTVMGGS 110 (523) T ss_dssp CCCHHHHHHHHSCTTCCEEECTT---------C---CCCCCTTTTTTCCCGGGGEEEEEEEETTEEEEEEEECTTTGGGC T ss_pred CCCHHHHHHHHCCCCCCEECHHH---------H---CCCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEECCCEECCC T ss_conf 99899999996399975574012---------2---75765212345647887499999999999999999758673637 Q ss_pred CCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCC Q ss_conf 57789999999999998628968999768887765212467777889999999986299889985676420111120146 Q gi|254780820|r 136 IGIAAGEAIVKSCERAIAEKCPLVMFTASGGARMQEGILSLMQLPRTTIAINMLKDAGLPYIVVLTNPTTGGVTASYAML 215 (284) Q Consensus 136 mG~~~geki~~a~e~A~~~~~PlI~~~~SGGaRMqEG~~sL~qMakt~~a~~~l~~~~lP~I~vl~~pt~GGv~AS~a~l 215 (284) +|.++++|+.+++++|.++++|+|.+.+|||+|||||+.+|+||+++..++.+++. .+|+|+++++||+||.+++++ + T Consensus 111 ~g~~~~~K~~~~~~~A~~~~~P~V~l~dsgG~rl~e~~~~l~~~~~~~~~~~~~sg-~vP~Isvv~G~~~gG~a~~~~-~ 188 (523) T 1on3_A 111 AGETQSTKVVETMEQALLTGTPFLFFYDSGGARIQEGIDSLSGYGKMFFANVKLSG-VVPQIAIIAGPCAGGASYSPA-L 188 (523) T ss_dssp BCHHHHHHHHHHHHHHHHHTCCEEEEEEECSBCGGGTHHHHHHHHHHHHHHHHHTT-TSCEEEEEEEEEESGGGHHHH-H T ss_pred CCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHCCHHHHHHHHHCC-CCCEEEEEECCCCCCCEECCC-C T ss_conf 78888778988999998668988999806898665442203212599999998507-797799970788634020012-3 Q ss_pred CCEEEEECCCEEECCCHHHHHHHHCCCCC-CCCHHHHHHH-HCCCCCEEECHHHHHHHHH-HHHHHH Q ss_conf 85255531421102327887876367788-7202159999-6898353735899999999-999997 Q gi|254780820|r 216 GDIHLAEPGAEIGFAGRRVIEQTVREKLP-DGFQRSEYLV-EHGMIDRIVHRHDIPEVVS-SLCKIL 279 (284) Q Consensus 216 gDiiiaep~a~igFaG~rVi~~t~~~~lp-~~fqtae~l~-~~G~iD~iv~r~~l~~~i~-~ll~il 279 (284) +|++|+++++.++|+||+||+.+++++++ ++.+.++.+. .+|.+|.+++..+..-.+. ++|+.| T Consensus 189 ~d~vIm~~~a~l~l~GP~vV~~~~ge~v~~eelGGa~~h~~~sG~~d~v~~de~~a~~~~r~~ls~l 255 (523) T 1on3_A 189 TDFIIMTKKAHMFITGPQVIKSVTGEDVTADELGGAEAHMAISGNIHFVAEDDDAAELIAKKLLSFL 255 (523) T ss_dssp SSEEEEETTCEEESSCHHHHHHHHCCCCCHHHHHSHHHHHHTTCCCSEEESSHHHHHHHHHHHHHTS T ss_pred CCEEEEECCEEEEECCCHHHHHHCCCCCCHHHCCCHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHC T ss_conf 8389981560488428087787507867968802587887612766334133257999999998524 No 7 >1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 2.30A {Thermotoga maritima MSB8} SCOP: c.14.1.4 c.14.1.4 Probab=100.00 E-value=2.6e-41 Score=325.10 Aligned_cols=212 Identities=23% Similarity=0.328 Sum_probs=182.2 Q ss_pred ECCHHHHHHHHCCCCCCCCCCCCCCCCHHCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEEEECEEEEEEEEECHHHCCC Q ss_conf 43799999984556542013345687020186764203566776664216677169998787041499999833031853 Q gi|254780820|r 56 KIPAKERLKFLFDNAKYCLLDQPQVCQDPLKFRDNKKYIDRLKENRSKTGLIDSIVSAVGNVRDFKLVAVVHEFSFIGGS 135 (284) Q Consensus 56 rl~areRi~~l~D~gsf~Ei~~~~~~~DPL~F~d~k~Y~drl~~a~~kTg~~davv~G~G~I~G~~vvv~~~df~F~GGS 135 (284) ||+|||||++|+|+|||.|++......+... ...+.....|+||+|+|+|||++|+++++||+|+||| T Consensus 46 kltaRERi~~LlD~gSF~E~g~l~~~~~~~~------------~~~~~~~~~dgvV~G~G~I~Gr~v~v~a~D~tv~gGS 113 (527) T 1vrg_A 46 KLTAWERLELLLDPGTFVEIDKFVEHRNTYF------------GLDKVKLPRDGVITGVGEINGRKVAVFSQDFTVMGGS 113 (527) T ss_dssp CCCHHHHHHHHSCTTCCEEECTTCCCCCCGG------------GGGGCCCGGGGEEEEEEEETTEEEEEEEECTTTGGGC T ss_pred CCCHHHHHHHHCCCCCCEECCCCCCCCCCCC------------CCCCCCCCCCEEEEEEEEECCEEEEEEEECCCEECCC T ss_conf 9999999999657998747754315477554------------5334558887189999999999999999878770407 Q ss_pred CCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCC Q ss_conf 57789999999999998628968999768887765212467777889999999986299889985676420111120146 Q gi|254780820|r 136 IGIAAGEAIVKSCERAIAEKCPLVMFTASGGARMQEGILSLMQLPRTTIAINMLKDAGLPYIVVLTNPTTGGVTASYAML 215 (284) Q Consensus 136 mG~~~geki~~a~e~A~~~~~PlI~~~~SGGaRMqEG~~sL~qMakt~~a~~~l~~~~lP~I~vl~~pt~GGv~AS~a~l 215 (284) +|.++++|+.++.++|.++++|+|.+.+|||+|||||+.+|+||.++..+...+ ..++|+|+++++||+||.++++++. T Consensus 114 ~g~~~~~k~~~~~~~A~~~~lPlV~l~~sgGar~~eg~~~l~~~g~i~~~~~~~-sg~vP~Isvv~Gp~~GG~A~~~~~~ 192 (527) T 1vrg_A 114 LGEMHAKKIVKLLDLALKMGIPVIGINDSGGARIQEGVDALAGYGEIFLRNTLA-SGVVPQITVIAGPCAGGAVYSPALT 192 (527) T ss_dssp BCHHHHHHHHHHHHHHHHHTCCEEEEEEECSBCGGGTHHHHHHHHHHHHHHHHH-TTTSCEEEEEEEEEBGGGGHHHHHS T ss_pred CCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHH-CCCCCEEEEECCCCCCHHHHHHHHC T ss_conf 788999999999999996599889985578877655542124406999999996-6999889994178760787778868 Q ss_pred CCEEEEECCCEEECCCHHHHHHHHCCCCCCCC-HHHHHHH-HCCCCCEEEC-HHHHHHHHHHHHHHHH Q ss_conf 85255531421102327887876367788720-2159999-6898353735-8999999999999972 Q gi|254780820|r 216 GDIHLAEPGAEIGFAGRRVIEQTVREKLPDGF-QRSEYLV-EHGMIDRIVH-RHDIPEVVSSLCKILT 280 (284) Q Consensus 216 gDiiiaep~a~igFaG~rVi~~t~~~~lp~~f-qtae~l~-~~G~iD~iv~-r~~l~~~i~~ll~il~ 280 (284) +++|+++++|+|+|+||+||++.++|+++++. ..++.+. ..|.+|.+++ ..+.-+.+-++|+.|- T Consensus 193 d~vim~~~~a~i~~aGP~vV~~~tGe~v~~eelGG~~~h~~~sG~~~~~~~~e~~a~~~~r~~ls~lp 260 (527) T 1vrg_A 193 DFIVMVDQTARMFITGPNVIKAVTGEEISQEDLGGAMVHNQKSGNAHFLADNDEKAMSLVRTLLSYLP 260 (527) T ss_dssp SEEEEETTTCBCBSSCHHHHHHHHCCCCCHHHHHBHHHHHHTSCCCSEEESSHHHHHHHHHHHHTTSC T ss_pred CEEEEECCCCEEEECCHHHHHHHCCCCCCHHHCCCCEEEEECCCCCCEEECCHHHHHHHHHHHHHHCC T ss_conf 85899617745871477889886076258565576047642255530542114779999999998578 No 8 >1x0u_A Hypothetical methylmalonyl-COA decarboxylase alpha subunit; lyase; 2.20A {Sulfolobus tokodaii str} Probab=100.00 E-value=1e-40 Score=320.68 Aligned_cols=213 Identities=25% Similarity=0.388 Sum_probs=184.2 Q ss_pred ECCHHHHHHHHCCCCCCCCCCCCCCCCHHCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEEEECEEEEEEEEECHHHCCC Q ss_conf 43799999984556542013345687020186764203566776664216677169998787041499999833031853 Q gi|254780820|r 56 KIPAKERLKFLFDNAKYCLLDQPQVCQDPLKFRDNKKYIDRLKENRSKTGLIDSIVSAVGNVRDFKLVAVVHEFSFIGGS 135 (284) Q Consensus 56 rl~areRi~~l~D~gsf~Ei~~~~~~~DPL~F~d~k~Y~drl~~a~~kTg~~davv~G~G~I~G~~vvv~~~df~F~GGS 135 (284) ||+|||||++|||+|||.|++. |.+.+.|.+++ .+++...|+||+|.|+|+|++|+++++||+|+||| T Consensus 39 kltaRERi~~LlD~gSF~E~~~---------~~~~~~~~~~~---~~~~~~~dgvv~G~G~I~Gr~v~v~a~D~tv~gGS 106 (522) T 1x0u_A 39 KLTARERLALLFDDGKFNEIMT---------FATTRATEFGL---DKQRFYGDGVVTGWGKVDGRTVFAYAQDFTVLGGS 106 (522) T ss_dssp CCCHHHHHHHHSSSSCCEESSS---------SCCCCCCGGGT---TTCCCTTTTEEEEEEEETTEEEEEEEECTTTGGGC T ss_pred CCCHHHHHHHHCCCCCCEECHH---------HHCCCCCCCCC---CCCCCCCCEEEEEEEEECCEEEEEEEECCCEECCC T ss_conf 9999999999658997558352---------21646553354---34568898599999999999999999878550427 Q ss_pred CCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCC Q ss_conf 57789999999999998628968999768887765212467777889999999986299889985676420111120146 Q gi|254780820|r 136 IGIAAGEAIVKSCERAIAEKCPLVMFTASGGARMQEGILSLMQLPRTTIAINMLKDAGLPYIVVLTNPTTGGVTASYAML 215 (284) Q Consensus 136 mG~~~geki~~a~e~A~~~~~PlI~~~~SGGaRMqEG~~sL~qMakt~~a~~~l~~~~lP~I~vl~~pt~GGv~AS~a~l 215 (284) +|.++++|+.++.|+|.++++|+|.+.+|||+|||||+.||++++++... ..+...++|+|+++++||+||.++++++. T Consensus 107 ~g~~~~~K~~~a~e~A~~~~lPlV~l~~SgGar~~eg~~~l~~~~~~~~~-~~~~s~~iP~Isvv~G~~~gG~a~~~~~~ 185 (522) T 1x0u_A 107 LGETHANKIVRAYELALKVGAPVVGINDSGGARIQEGALSLEGYGAVFKM-NVMASGVIPQITIMAGPAAGGAVYSPALT 185 (522) T ss_dssp BCHHHHHHHHHHHHHHHHHTCCEEEEECCCSBCGGGTHHHHHHHHHHHHH-HHHHTTTSCEEEEECSEEEGGGGHHHHHS T ss_pred CCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHH-HHHHCCCCCEEEEECCCCCCCHHHHHHHC T ss_conf 78778578679999998559998999678887777652002342178999-99975899779981478871052326646 Q ss_pred CCEEEEECCC-EEECCCHHHHHHHHCCCCC-CCCHHHHHH-HHCCCCCEEEC-HHHHHHHHHHHHHHHHC Q ss_conf 8525553142-1102327887876367788-720215999-96898353735-89999999999999723 Q gi|254780820|r 216 GDIHLAEPGA-EIGFAGRRVIEQTVREKLP-DGFQRSEYL-VEHGMIDRIVH-RHDIPEVVSSLCKILTK 281 (284) Q Consensus 216 gDiiiaep~a-~igFaG~rVi~~t~~~~lp-~~fqtae~l-~~~G~iD~iv~-r~~l~~~i~~ll~il~~ 281 (284) +++++.|+.+ .++++||||+++.++|+++ ++...++.+ ..+|.+|.+++ ..+.-+.+-++|+.|-. T Consensus 186 d~vim~~~~~~~~flaGP~vv~~~~ge~~~~~elGga~~h~~~sG~~d~v~~de~~a~~~~r~~ls~lp~ 255 (522) T 1x0u_A 186 DFIIMIKGDAYYMFVTGPEITKVVLGEEVSFQDLGGAVVHATKSGVVHFMVDSEQEAINLTKRLLSYLPS 255 (522) T ss_dssp SEEEEECSTTCEEESSCHHHHHHTTCCCCCHHHHHBHHHHHHTTCCCSEEESCHHHHHHHHHHHHHHSCS T ss_pred CCEEEECCCCEEEEECCCCEEEEECCCCCCCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCC T ss_conf 7212204762378741641013202554461013443354421686410045368999999999974887 No 9 >3gf3_A Glutaconyl-COA decarboxylase subunit A; sodium ION transport, biotin, glutamate fermentation, lyase; HET: COO; 1.75A {Clostridium symbiosum} PDB: 3gf7_A 3glm_A* 3gma_A* Probab=100.00 E-value=1.7e-35 Score=281.97 Aligned_cols=205 Identities=16% Similarity=0.210 Sum_probs=171.6 Q ss_pred ECCHHHHHHHHCCCCCCCCCCCCCCCCHHCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEEEECEEEEEEEEECHHHCCC Q ss_conf 43799999984556542013345687020186764203566776664216677169998787041499999833031853 Q gi|254780820|r 56 KIPAKERLKFLFDNAKYCLLDQPQVCQDPLKFRDNKKYIDRLKENRSKTGLIDSIVSAVGNVRDFKLVAVVHEFSFIGGS 135 (284) Q Consensus 56 rl~areRi~~l~D~gsf~Ei~~~~~~~DPL~F~d~k~Y~drl~~a~~kTg~~davv~G~G~I~G~~vvv~~~df~F~GGS 135 (284) +|+|||||+.|+|+|||.|++......+ +++ -.|+||+|+|+|+|++|+++++||+|+||| T Consensus 61 kltaRERI~~LlD~gSF~E~~~l~~~~~------------------~~~-~~~gvV~G~G~I~Gr~V~V~a~D~tv~gGS 121 (588) T 3gf3_A 61 QLSAMQRINALIDPGTWCPLNSLFNPEN------------------NKF-GTTNIVNGLGRVDGKWVYIVASDNKKMAGA 121 (588) T ss_dssp CCCHHHHHHHHSCTTCCEEESTTCCTTC------------------CTT-SSCSEEEEEEEETTEEEEEEEECTTSGGGC T ss_pred CCCHHHHHHHHCCCCCCCCCHHHHHCCC------------------CCC-CCCCEEEEEEEECCEEEEEEEECCCCCCCC T ss_conf 9999999999658997501266672046------------------888-998689999999999999999978211569 Q ss_pred CCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHH---HHHHHHHHHHHCCCCEEEEECCCCCCEEEEEE Q ss_conf 577899999999999986289689997688877652124677778---89999999986299889985676420111120 Q gi|254780820|r 136 IGIAAGEAIVKSCERAIAEKCPLVMFTASGGARMQEGILSLMQLP---RTTIAINMLKDAGLPYIVVLTNPTTGGVTASY 212 (284) Q Consensus 136 mG~~~geki~~a~e~A~~~~~PlI~~~~SGGaRMqEG~~sL~qMa---kt~~a~~~l~~~~lP~I~vl~~pt~GGv~AS~ 212 (284) +|.++++|+.|+.++|.+.++|+|.+.+|||+||||+...+.+|. ++..+..+++..++|+|+++.+||+||.+++ T Consensus 122 ~g~~~~~K~~r~~e~A~~~~lP~V~l~dsgGaRl~e~~~~~~~~~~~g~~~~~~~~~s~~~iP~Isvv~G~~~gG~a~~- 200 (588) T 3gf3_A 122 WVPGQAENLIRCSDAAKMMHLPLIYLLNCSGVEFPNQDKVYPNRRGGGTPFFRNSELNQLGIPVIVGIYGTNPAGGGYH- 200 (588) T ss_dssp BCTTHHHHHHHHHHHHHHHTCCEEEEECCCCBCGGGHHHHSSSTTSTTHHHHHHHHHHHTTCCEEEEECSEEETHHHHH- T ss_pred CCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCEE- T ss_conf 7878989999999999985989799944787666654223530444438999999985699977999457766665301- Q ss_pred CCCCCEEEEECCCEEECCCHHHHHHHHCCCCCCCCH--------------------HHHHHH-HCCCCCEEEC-HHHHHH Q ss_conf 146852555314211023278878763677887202--------------------159999-6898353735-899999 Q gi|254780820|r 213 AMLGDIHLAEPGAEIGFAGRRVIEQTVREKLPDGFQ--------------------RSEYLV-EHGMIDRIVH-RHDIPE 270 (284) Q Consensus 213 a~lgDiiiaep~a~igFaG~rVi~~t~~~~lp~~fq--------------------tae~l~-~~G~iD~iv~-r~~l~~ 270 (284) ++.+|++|++++++|+|+||+||+..+++...+++. .++.+. ++|.+|.+++ ..+--+ T Consensus 201 a~s~~~ii~~~~a~i~l~GP~vv~~~~g~~~~~~~~g~~~~~~~~~~e~l~~~~lgga~~h~~~sGv~d~va~de~~a~~ 280 (588) T 3gf3_A 201 SISPTILIAHQDANMAVGGAGILSGMNPKGYIDDEAAEQIIAAQIENSKLKVPAPGSVPIHYDETGFFREVYQNDLGVID 280 (588) T ss_dssp HHSSSEEEEETTCEEESSCCC---------------CHHHHHHHHHHHHTTCCCTTBHHHHTTTSCCSCEEESSHHHHHH T ss_pred ECCCCCCEEECCEEEEECCCHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCHHHHHH T ss_conf 20465323524347997282353035774334311245554300222210234577435442024654102478799999 Q ss_pred HHHHHHHHHH Q ss_conf 9999999972 Q gi|254780820|r 271 VVSSLCKILT 280 (284) Q Consensus 271 ~i~~ll~il~ 280 (284) .+.++|+.|- T Consensus 281 ~~r~~ls~lp 290 (588) T 3gf3_A 281 GIKKYISYLP 290 (588) T ss_dssp HHHHHHHTSC T ss_pred HHHHHHHHCC T ss_conf 8888984488 No 10 >1pix_A Glutaconyl-COA decarboxylase A subunit; biotin-dependent ION pump, carboxyltransferase, lyase; 2.20A {Acidaminococcus fermentans} SCOP: c.14.1.4 c.14.1.4 Probab=100.00 E-value=1.8e-33 Score=267.01 Aligned_cols=205 Identities=16% Similarity=0.191 Sum_probs=167.5 Q ss_pred ECCHHHHHHHHCCCCCCCCCCCCCCCCHHCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEEEECEEEEEEEEECHHHCCC Q ss_conf 43799999984556542013345687020186764203566776664216677169998787041499999833031853 Q gi|254780820|r 56 KIPAKERLKFLFDNAKYCLLDQPQVCQDPLKFRDNKKYIDRLKENRSKTGLIDSIVSAVGNVRDFKLVAVVHEFSFIGGS 135 (284) Q Consensus 56 rl~areRi~~l~D~gsf~Ei~~~~~~~DPL~F~d~k~Y~drl~~a~~kTg~~davv~G~G~I~G~~vvv~~~df~F~GGS 135 (284) +|+|||||++|+|+|||.|++...... + .++ -.|+||+|+|+|+|++|+++++||+|+||| T Consensus 60 kltaReRI~~L~D~gSF~E~~~l~~~~------~------------~~~-~~~~vV~G~G~I~Gr~v~v~a~D~tv~gGs 120 (587) T 1pix_A 60 ELTALQRIEKLVEPGSWRPLNTLFNPQ------G------------NKN-GSVAIVKGLGRVNGKWCVVVASDNKKLAGA 120 (587) T ss_dssp CCCHHHHHHHHSCTTCCEEESTTCCTT------C------------CTT-SCCSEEEEEEEETTEEEEEEEECTTTTTTE T ss_pred CCCHHHHHHHHCCCCCCCCCHHHHHHC------C------------CCC-CCCEEEEEEEEECCEEEEEEEECCCCCCCC T ss_conf 999999999854999630231445303------6------------889-997599999999999999999868211508 Q ss_pred CCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHH---HHHHHHHHHHHCCCCEEEEECCCCCCEEEEEE Q ss_conf 577899999999999986289689997688877652124677778---89999999986299889985676420111120 Q gi|254780820|r 136 IGIAAGEAIVKSCERAIAEKCPLVMFTASGGARMQEGILSLMQLP---RTTIAINMLKDAGLPYIVVLTNPTTGGVTASY 212 (284) Q Consensus 136 mG~~~geki~~a~e~A~~~~~PlI~~~~SGGaRMqEG~~sL~qMa---kt~~a~~~l~~~~lP~I~vl~~pt~GGv~AS~ 212 (284) +|..+++|+.|+.++|.+.++|+|.+.+|||+||||+...+.++. +....+.+++..++|+|+++.+||+||.+++ T Consensus 121 ~g~~~~~K~~r~~~lA~~~~lP~I~l~ds~Garl~e~~~~~~~~~~~g~~~~~~~~~s~~~vP~Isvv~G~~~gGgA~~- 199 (587) T 1pix_A 121 WVPGQAECLLRASDTAKTLHVPLVYVLNCSGVKFDEQEKVYPNRRGGGTPFFRNAELNQLGIPVIVGIYGTNPAGGGYH- 199 (587) T ss_dssp ECTTHHHHHHHHHHHHHHHTCCEEEEECCCEECGGGHHHHSSSTTSTTHHHHHHHHHHHTTCCEEEEECSEEETHHHHH- T ss_pred CCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCHH- T ss_conf 7878989999999999982999899955788766651344100545649999999984699856750357867642011- Q ss_pred CCCCCEEEEECCCEEECCCHHHHHHHHCCCCC------------------CCCHHHHHHH-HCCCCCEEECHH-HHHHHH Q ss_conf 14685255531421102327887876367788------------------7202159999-689835373589-999999 Q gi|254780820|r 213 AMLGDIHLAEPGAEIGFAGRRVIEQTVREKLP------------------DGFQRSEYLV-EHGMIDRIVHRH-DIPEVV 272 (284) Q Consensus 213 a~lgDiiiaep~a~igFaG~rVi~~t~~~~lp------------------~~fqtae~l~-~~G~iD~iv~r~-~l~~~i 272 (284) ++.+|++++.++++|+++||+||+...++..+ +....++.+. ..|.+|.+++.. +--+.+ T Consensus 200 ~~s~~~ii~~~~s~i~laGP~vi~~~~~~~~~~~~~~~~v~~~~g~~~~~e~LGGa~iH~~~sGv~d~va~de~~a~~~i 279 (587) T 1pix_A 200 SISPTVIIAHEKANMAVGGAGIMGGMNPKGHVDLEYANEIADMVDRTGKTEPPGAVDIHYTETGFMREVYASEEGVLEGI 279 (587) T ss_dssp HHSSSEEEEETTCEEESCCCTTCCSCCSSSSCCHHHHHHHHHHHHTTCCCCCSSBHHHHTTTSCCSCEEESSHHHHHHHH T ss_pred HHHCEEEEEECCEEEEECCCHHHHCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCHHHHHHCCCCCCEEECCHHHHHHHH T ss_conf 00021688724437995070564203443322323442011000443441025624343310487641224679999999 Q ss_pred HHHHHHHH Q ss_conf 99999972 Q gi|254780820|r 273 SSLCKILT 280 (284) Q Consensus 273 ~~ll~il~ 280 (284) .++|+.|- T Consensus 280 r~~ls~lP 287 (587) T 1pix_A 280 KKYVGMLP 287 (587) T ss_dssp HHHHHTSC T ss_pred HHHHHHCC T ss_conf 99986475 No 11 >3k8x_A Acetyl-COA carboxylase; transferase, carboxyltransferase, AC tepraloxydim, ATP-binding, biotin, cytoplasm, fatty acid biosynthesis; HET: B89; 2.30A {Saccharomyces cerevisiae} PDB: 1w2x_A* 3h0s_A* 3h0j_A* 3h0q_A* 1od2_A* 1od4_A* 1uyr_A* 1uys_A* 1uyt_A 1uyv_A Probab=99.95 E-value=4e-26 Score=212.77 Aligned_cols=172 Identities=20% Similarity=0.199 Sum_probs=145.0 Q ss_pred CCCEEEEEEEE------ECEEEEEEEEECHHHCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCC--CCCHHHHHH Q ss_conf 77169998787------0414999998330318535778999999999999862896899976888776--521246777 Q gi|254780820|r 107 IDSIVSAVGNV------RDFKLVAVVHEFSFIGGSIGIAAGEAIVKSCERAIAEKCPLVMFTASGGARM--QEGILSLMQ 178 (284) Q Consensus 107 ~davv~G~G~I------~G~~vvv~~~df~F~GGSmG~~~geki~~a~e~A~~~~~PlI~~~~SGGaRM--qEG~~sL~q 178 (284) +.++|++.+++ +|++|+++++||+|+|||+|.++++||.++.|+|.++++|+|.+++|||||| ||++++|+| T Consensus 86 ~~g~V~~~~~~~tpe~p~GR~vvVianD~T~~gGS~G~~~~~ki~~a~elA~~~glP~I~l~~sgGARi~~~eev~~~~~ 165 (758) T 3k8x_A 86 AIGMVAFKITVKTPEYPRGRQFVVVANDITFKIGSFGPQEDEFFNKVTEYARKRGIPRIYLAANSGARIGMAEEIVPLFQ 165 (758) T ss_dssp SSSEEEEEEEECCSSCTTCEEEEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHHTCCEEEEECCCCBCCCCCGGGTTTCE T ss_pred CCCEEEEEEEECCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHCCCCC T ss_conf 61269779896898688996899998847620657888999999999999998399989996588868643201023321 Q ss_pred HH-------------------------------------------------------------------HHHHHHHHHHH Q ss_conf 78-------------------------------------------------------------------89999999986 Q gi|254780820|r 179 LP-------------------------------------------------------------------RTTIAINMLKD 191 (284) Q Consensus 179 Ma-------------------------------------------------------------------kt~~a~~~l~~ 191 (284) |+ .+..+..+.. T Consensus 166 va~~~~~~p~~G~~ylyl~~e~~~~l~~~~~~~~v~~~~~~~~Ge~~~~i~~iiG~~~~~GVe~L~g~G~I~~~~s~as- 244 (758) T 3k8x_A 166 VAWNDAANPDKGFQYLYLTSEGMETLKKFDKENSVLTERTVINGEERFVIKTIIGSEDGLGVECLRGSGLIAGATSRAY- 244 (758) T ss_dssp EEESSTTCGGGCEEEEEECHHHHHHHHHTTCGGGEEEEEEEETTEEEEEEEEECCSSSCSSHHHHHHHHHHHHHHHHHH- T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH- T ss_conf 1346766733475520136677766642034562022101357764200034446545555200045579999987661- Q ss_pred CCCCEEEEECCCCCCEEEEEECCCCCEEEEECCCEEECCCHHHHHHHHCCCCCC---CCHHHHHHHHCCCCCEEECHHH- Q ss_conf 299889985676420111120146852555314211023278878763677887---2021599996898353735899- Q gi|254780820|r 192 AGLPYIVVLTNPTTGGVTASYAMLGDIHLAEPGAEIGFAGRRVIEQTVREKLPD---GFQRSEYLVEHGMIDRIVHRHD- 267 (284) Q Consensus 192 ~~lP~I~vl~~pt~GGv~AS~a~lgDiiiaep~a~igFaG~rVi~~t~~~~lp~---~fqtae~l~~~G~iD~iv~r~~- 267 (284) ..+|+|+++++||+||.+++++ ++|++|+.+++.|+|+||++++++++++... +.+.++....+|.+|.+++..+ T Consensus 245 ~~iP~Is~V~G~~~GggAy~~~-l~D~vImv~~~~i~ltGp~av~k~~G~ev~~~~~~~G~~~~~~~nGv~d~~a~dd~e 323 (758) T 3k8x_A 245 HDIFTITLVTCRSVGIGAYLVR-LGQRAIQVEGQPIILTGAPAINKMLGREVYTSNLQLGGTQIMYNNGVSHLTAVDDLA 323 (758) T ss_dssp TTSCEEEEECSCEETHHHHHHH-HTCEEEEETTCCEESSCHHHHHHHHTSCCCSCTHHHHSHHHHTTTTSSSEEESSHHH T ss_pred CCCCEEEEEECCCCCHHHHHHH-CCCCEEEECCCEEEEECCHHHHHHHCCCCCCCCCCCCHHHHHHCCCCEEEEECCHHH T ss_conf 2576799970676523565322-056026636853899785788887457255665454257676346640586446788 Q ss_pred HHHHHHHHHHHHH Q ss_conf 9999999999972 Q gi|254780820|r 268 IPEVVSSLCKILT 280 (284) Q Consensus 268 l~~~i~~ll~il~ 280 (284) --..+-++|+.+- T Consensus 324 ai~~ir~~lsylP 336 (758) T 3k8x_A 324 GVEKIVEWMSYVP 336 (758) T ss_dssp HHHHHHHHHTTSC T ss_pred HHHHHHHHHHCCC T ss_conf 9999999871288 No 12 >3ff6_A Acetyl-COA carboxylase 2; ACC2, ACC, metabolic disorder, fatty acid metabolism, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis; HET: RCP; 3.19A {Homo sapiens} Probab=99.94 E-value=7.9e-26 Score=210.58 Aligned_cols=171 Identities=16% Similarity=0.139 Sum_probs=143.7 Q ss_pred CCCEEEEEEEE------ECEEEEEEEEECHHHCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCC--CCCCHH---- Q ss_conf 77169998787------041499999833031853577899999999999986289689997688877--652124---- Q gi|254780820|r 107 IDSIVSAVGNV------RDFKLVAVVHEFSFIGGSIGIAAGEAIVKSCERAIAEKCPLVMFTASGGAR--MQEGIL---- 174 (284) Q Consensus 107 ~davv~G~G~I------~G~~vvv~~~df~F~GGSmG~~~geki~~a~e~A~~~~~PlI~~~~SGGaR--MqEG~~---- 174 (284) +.++|+|.+++ +|++|++++.||+|+|||+|..+++||.++.|+|.+.++|+|.+.+||||| |||++. T Consensus 76 ~~gmV~~~~~~~t~~~~~GR~vvvianD~T~~~GS~g~~~~~k~~~a~elA~~~~lP~I~l~~ssGARi~~~e~~~~~~~ 155 (760) T 3ff6_A 76 EVGMVAFKMRFKTQEYPEGRDVIVIGNDITFRIGSFGPGEDLLYLRASEMARAEGIPKIYVAANSGARIGMAEEIKHMFH 155 (760) T ss_dssp SSSEEEEEEEECCSSCTTCEEEEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHTTCCEEEEECCCCBCCCCCHHHHTTCE T ss_pred CCCEEEEEEEECCCCCCCCCEEEEEEECCCEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCC T ss_conf 61359689986798786980899999847640547878999999999999998499889995478868643221111232 Q ss_pred ------------------------------------------------------------HHHHHHHHHHHHHHHHHCCC Q ss_conf ------------------------------------------------------------67777889999999986299 Q gi|254780820|r 175 ------------------------------------------------------------SLMQLPRTTIAINMLKDAGL 194 (284) Q Consensus 175 ------------------------------------------------------------sL~qMakt~~a~~~l~~~~l 194 (284) +|.+.+.+..+..+. ..++ T Consensus 156 va~~~~~~~~~G~~yly~t~~~~~~~~~~~~v~~~~~~~~ge~~~~i~~iig~~~~~GVe~L~g~g~i~~~~s~a-~~~I 234 (760) T 3ff6_A 156 VAWVDPEDPHKGFKYLYLTPQDYTRISSLNSVHCKHIEEGGESRYMITDIIGKDDGLGVENLRGSGMIAGESSLA-YEEI 234 (760) T ss_dssp EEESCTTCTTSCEEEEEECHHHHHHHHTTTCEEEEEECGGGCCEEEEEEECCSSSSSSHHHHHHHHHHHHHHHHH-HHHS T ss_pred CCCCCCCCCCCCCEEECCCHHHHHHHHHCCCCEEEEECCCCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHH-CCCC T ss_conf 134577774456212205778887654136420110024776421002333665565500267779999999975-4789 Q ss_pred CEEEEECCCCCCEEEEEECCCCCEEEEECCCEEECCCHHHHHHHHCCCC---CCCCHHHHHHHHCCCCCEEECHHHH-HH Q ss_conf 8899856764201111201468525553142110232788787636778---8720215999968983537358999-99 Q gi|254780820|r 195 PYIVVLTNPTTGGVTASYAMLGDIHLAEPGAEIGFAGRRVIEQTVREKL---PDGFQRSEYLVEHGMIDRIVHRHDI-PE 270 (284) Q Consensus 195 P~I~vl~~pt~GGv~AS~a~lgDiiiaep~a~igFaG~rVi~~t~~~~l---p~~fqtae~l~~~G~iD~iv~r~~l-~~ 270 (284) |+|+++++||+||.+++.+ ++|++|+.+++.|+|+||+|+++.+|++. ++..+.++....+|.+|.+++..+- -. T Consensus 235 ptis~V~G~~~GggAyl~~-L~d~~I~~~~s~i~LtGp~vl~~~~G~ev~~s~e~~Gg~~~~~~nGvad~~a~dd~eai~ 313 (760) T 3ff6_A 235 VTISLVTCRAIGIGAYLVR-LGQRVIQVENSHIILTGASALNKVLGREVYTSNNQLGGVQIMHYNGVSHITVPDDFEGVY 313 (760) T ss_dssp CEEEEESSCEETHHHHHHH-HHCEEEEETTCBEESSCHHHHHHHHSSCCCCCHHHHHBHHHHTTTTSSSEEESSHHHHHH T ss_pred CEEEEECCCCCCHHHHHHH-CCCEEEEECCCEEEEECCHHHHHHCCCCCCCCCHHCCHHHHHCCCCCCCEEECCHHHHHH T ss_conf 8899971686515664321-064378757835885184777653586304780321705553347776601168899999 Q ss_pred HHHHHHHHH Q ss_conf 999999997 Q gi|254780820|r 271 VVSSLCKIL 279 (284) Q Consensus 271 ~i~~ll~il 279 (284) .+-++|+.+ T Consensus 314 ~ir~~ls~l 322 (760) T 3ff6_A 314 TILEWLSYM 322 (760) T ss_dssp HHHHHHTTS T ss_pred HHHHHHHHC T ss_conf 999998637 No 13 >3iav_A Propionyl-COA carboxylase complex B subunit; accase, pccase, ACC, PCC, CT, carboxyltransfe polyketide, fatty acid, PKS, FAS; 1.75A {Streptomyces coelicolor} PDB: 1xnw_A 3ib9_A* 3ibb_A 1xny_A* 1xnv_A* 1xo6_A Probab=99.74 E-value=1.1e-15 Score=135.46 Aligned_cols=204 Identities=19% Similarity=0.276 Sum_probs=159.5 Q ss_pred CCCCCCCCCEECCHHHHHHHHCCCCCCCCCCCCCCCCHHCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEEEECEEEEEE Q ss_conf 83889989624379999998455654201334568702018676420356677666421667716999878704149999 Q gi|254780820|r 46 WVISSSDFHMKIPAKERLKFLFDNAKYCLLDQPQVCQDPLKFRDNKKYIDRLKENRSKTGLIDSIVSAVGNVRDFKLVAV 125 (284) Q Consensus 46 ~VCp~C~~H~rl~areRi~~l~D~gsf~Ei~~~~~~~DPL~F~d~k~Y~drl~~a~~kTg~~davv~G~G~I~G~~vvv~ 125 (284) .+-| .+..-+...|+-|+.++|.++|.|+.. .| ..++|||.++|+|++|.+. T Consensus 286 ~ivP-~~~~~~yd~r~vi~~i~D~~~f~E~~~--------------~~-------------g~~ivtg~arl~G~~VGvi 337 (530) T 3iav_A 286 TIVP-DSANQPYDMHSVIEHVLDDAEFFETQP--------------LF-------------APNILTGFGRVEGRPVGIV 337 (530) T ss_dssp GSSC-SSTTCCCCHHHHHHTTSGGGCCEEEST--------------TS-------------CTTEEEEEEEETTEEEEEE T ss_pred CCCC-CCCCCCCCCHHHCEEEEECCCCEEECC--------------CC-------------CCCEEEEEEEECCEEEEEE T ss_conf 0377-878998740400667775663222024--------------55-------------8852788999877589997 Q ss_pred EEECHHHCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCC-----CCCHHHHHHHHHHHHHHHHHHHCCCCEEEEE Q ss_conf 98330318535778999999999999862896899976888776-----5212467777889999999986299889985 Q gi|254780820|r 126 VHEFSFIGGSIGIAAGEAIVKSCERAIAEKCPLVMFTASGGARM-----QEGILSLMQLPRTTIAINMLKDAGLPYIVVL 200 (284) Q Consensus 126 ~~df~F~GGSmG~~~geki~~a~e~A~~~~~PlI~~~~SGGaRM-----qEG~~sL~qMakt~~a~~~l~~~~lP~I~vl 200 (284) +.|..+.+|.+....++|.+|.++.|-+.++|||.|.+.-|.-. +.|++ --.++. +..+..+.+|.|+|+ T Consensus 338 An~p~~~~G~~~~~~a~Kaarfi~lcd~~~iPlv~lvDtpGf~~G~~~E~~G~~--~~gA~l---~~a~a~~~vP~isvi 412 (530) T 3iav_A 338 ANQPMQFAGCLDITASEKAARFVRTCDAFNVPVLTFVDVPGFLPGVDQEHDGII--RRGAKL---IFAYAEATVPLITVI 412 (530) T ss_dssp EECTTSGGGCBCHHHHHHHHHHHHHHHHTTCCEEEEEEECCBCCCHHHHHTTHH--HHHHHH---HHHHHHCCSCEEEEE T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHH--HHHHHH---HHHHHHCCCCEEEEE T ss_conf 557322368878556999999999986369965899744676788899997699--999999---999983899869999 Q ss_pred CCCCCCEEEEEECCC-----CCEEEEECCCEEECCCHHHHHHHH-CCCC---CCCC--H-------------HHHHHHHC Q ss_conf 676420111120146-----852555314211023278878763-6778---8720--2-------------15999968 Q gi|254780820|r 201 TNPTTGGVTASYAML-----GDIHLAEPGAEIGFAGRRVIEQTV-REKL---PDGF--Q-------------RSEYLVEH 256 (284) Q Consensus 201 ~~pt~GGv~AS~a~l-----gDiiiaep~a~igFaG~rVi~~t~-~~~l---p~~f--q-------------tae~l~~~ 256 (284) ++..+||. .++|. .|+++|-|.|.++.-||.---..+ +.++ +++- + .+....++ T Consensus 413 igka~Ggg--~~am~~~~~~~d~~~AwP~a~~~vm~~egaa~i~~r~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~aa~~ 490 (530) T 3iav_A 413 TRKAFGGA--YVVMGSKHLGADLNLAWPTAQIAVMGAQGAVNILHRRTIADAGDDAEATRARLIQEYEDALLNPYTAAER 490 (530) T ss_dssp EEEEEHHH--HHHTTCGGGTCSEEEECTTCEEESSCHHHHHHHHTSTTTSTTCTTCHHHHHHHHHHHHHHHSSSHHHHHT T ss_pred ECCCCCHH--HHHHCCCCCCCCEEEECCCCEEEECCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHC T ss_conf 89854088--7874244568887999687759716999999999765564277778999999999999885698999874 Q ss_pred CCCCEEECHHHHHHHHHHHHHHHHCCCC Q ss_conf 9835373589999999999999723789 Q gi|254780820|r 257 GMIDRIVHRHDIPEVVSSLCKILTKSVQ 284 (284) Q Consensus 257 G~iD~iv~r~~l~~~i~~ll~il~~~~~ 284 (284) |++|.||++.|.|+.|..-|.+|..|.+ T Consensus 491 ~~vD~vIdP~dtR~~L~~~L~~l~~k~~ 518 (530) T 3iav_A 491 GYVDAVIMPSDTRRHIVRGLRQLRTKRE 518 (530) T ss_dssp TSSSEECCGGGHHHHHHHHHHHHTTCCC T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHCCC T ss_conf 7878747899999999999999861665 No 14 >1x0u_A Hypothetical methylmalonyl-COA decarboxylase alpha subunit; lyase; 2.20A {Sulfolobus tokodaii str} Probab=99.73 E-value=1.6e-15 Score=134.44 Aligned_cols=200 Identities=22% Similarity=0.297 Sum_probs=158.0 Q ss_pred CCCEECCHHHHHHHHCCCCCCCCCCCCCCCCHHCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEEEECEEEEEEEEECHH Q ss_conf 89624379999998455654201334568702018676420356677666421667716999878704149999983303 Q gi|254780820|r 52 DFHMKIPAKERLKFLFDNAKYCLLDQPQVCQDPLKFRDNKKYIDRLKENRSKTGLIDSIVSAVGNVRDFKLVAVVHEFSF 131 (284) Q Consensus 52 ~~H~rl~areRi~~l~D~gsf~Ei~~~~~~~DPL~F~d~k~Y~drl~~a~~kTg~~davv~G~G~I~G~~vvv~~~df~F 131 (284) +..-+...|+-++.++|.++|.|+... | ..+++||.++|+|++|.+.+.+... T Consensus 284 ~~~~~yd~r~vi~~i~D~~~f~E~~~~--------------~-------------g~~vvtg~arl~G~~VGvvAn~p~~ 336 (522) T 1x0u_A 284 DAAKPYNMREIIYKIVDNGEFLEVHKH--------------W-------------AQNIIVGFARIAGNVVGIVANNPEE 336 (522) T ss_dssp SSSCCCCHHHHHHHHSGGGCCEEETTT--------------S-------------CTTEEEEEEEETTEEEEEEEECTTT T ss_pred CCCCCCCCHHHEEEECCCCCEEEEECC--------------C-------------CCCEEEEEEEECCCEEEEECCCCCC T ss_conf 668777705420364157734776437--------------5-------------7846788888869266897778644 Q ss_pred HCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCC---CCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCEE Q ss_conf 18535778999999999999862896899976888776---521246777788999999998629988998567642011 Q gi|254780820|r 132 IGGSIGIAAGEAIVKSCERAIAEKCPLVMFTASGGARM---QEGILSLMQLPRTTIAINMLKDAGLPYIVVLTNPTTGGV 208 (284) Q Consensus 132 ~GGSmG~~~geki~~a~e~A~~~~~PlI~~~~SGGaRM---qEG~~sL~qMakt~~a~~~l~~~~lP~I~vl~~pt~GGv 208 (284) +||.+.....+|.+|.+..|-..++|||.+.+.-|.-. +|-.--+-..++... .+..+..|.|+|++...+|| T Consensus 337 ~~G~~~~~~a~Kaarfi~lcd~~~iPlv~lvDtpGf~~G~~~E~~Gi~~~ga~~~~---a~a~~~vP~isvi~~~~~Gg- 412 (522) T 1x0u_A 337 FGGSIDIDAADKAARFIRFCDAFNIPLISLVDTPGYVPGTDQEYKGIIRHGAKMLY---AFAEATVPKITVIVRKSYGG- 412 (522) T ss_dssp GGGCBCHHHHHHHHHHHHHHHHTTCCEEEEEEECCBCCSHHHHHTTHHHHHHHHHH---HHHHCCSCEEEEEEEEEEHH- T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHH---HHHHCCCCEEEEEECCCCCH- T ss_conf 67877737799999999733002754799842787777679999729999999999---99838998799986765466- Q ss_pred EEEECCC-----CCEEEEECCCEEECCCHHHHHHHH-CCCC-----CCCC--H----------HHHHHHHCCCCCEEECH Q ss_conf 1120146-----852555314211023278878763-6778-----8720--2----------15999968983537358 Q gi|254780820|r 209 TASYAML-----GDIHLAEPGAEIGFAGRRVIEQTV-REKL-----PDGF--Q----------RSEYLVEHGMIDRIVHR 265 (284) Q Consensus 209 ~AS~a~l-----gDiiiaep~a~igFaG~rVi~~t~-~~~l-----p~~f--q----------tae~l~~~G~iD~iv~r 265 (284) +.++|. .|+++|-|.|.++.-||.-.-.++ +.++ |++. + ++....+.|.||.||++ T Consensus 413 -g~~am~~~~~~~d~~~awP~a~~~vm~pEgaa~i~~r~~l~~a~~~~~~~~~~~~~~~~~~~~~~~aa~~g~iD~VIdP 491 (522) T 1x0u_A 413 -AHIAMSIKSLGADLVYAWPTAEIAVTGPEGAVRILYRKEIQQASNPDDVLKQRIAEYRKLFANPYWAAEKGLVDDVIEP 491 (522) T ss_dssp -HHHHTCCGGGTCSEEEECTTCEEESSCHHHHHHHHTSSSSSSSSSSSSSSHHHHHHHHHHHSSSHHHHHTTSSSEECCG T ss_pred -HHHHHCCCCCCCCEEEECCCCEEEECCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHCCCCCEEECH T ss_conf -7775426677888799967577984599999999867656437898999999999999875799999866885732887 Q ss_pred HHHHHHHHHHHHHHHCCC Q ss_conf 999999999999972378 Q gi|254780820|r 266 HDIPEVVSSLCKILTKSV 283 (284) Q Consensus 266 ~~l~~~i~~ll~il~~~~ 283 (284) .|.|..|...|+++..|. T Consensus 492 ~~tR~~l~~~L~~~~~k~ 509 (522) T 1x0u_A 492 KDTRRVIVAGLEMLKTKR 509 (522) T ss_dssp GGHHHHHHHHHHHHTTCC T ss_pred HHHHHHHHHHHHHHHHCC T ss_conf 999999999999976276 No 15 >2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid biosynthesis, accase, ligase, transferase; 2.2A {Mycobacterium tuberculosis} PDB: 2a7s_A Probab=99.72 E-value=3.1e-15 Score=132.21 Aligned_cols=206 Identities=20% Similarity=0.253 Sum_probs=159.3 Q ss_pred HCCCCCCCCCCEECCHHHHHHHHCCCCCCCCCCCCCCCCHHCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEEEECEEEE Q ss_conf 33838899896243799999984556542013345687020186764203566776664216677169998787041499 Q gi|254780820|r 44 NQWVISSSDFHMKIPAKERLKFLFDNAKYCLLDQPQVCQDPLKFRDNKKYIDRLKENRSKTGLIDSIVSAVGNVRDFKLV 123 (284) Q Consensus 44 n~~VCp~C~~H~rl~areRi~~l~D~gsf~Ei~~~~~~~DPL~F~d~k~Y~drl~~a~~kTg~~davv~G~G~I~G~~vv 123 (284) -+.+.|. +.--....|+-|+.++| ++|.|+.. .| ..++|||.++|+|++|. T Consensus 300 l~~~iP~-~~~~~yd~r~vi~~i~D-~sf~E~~~--------------~~-------------g~~~vtg~aRl~G~~VG 350 (548) T 2bzr_A 300 LDTLIPD-SPNQPYDMHEVITRLLD-DEFLEIQA--------------GY-------------AQNIVVGFGRIDGRPVG 350 (548) T ss_dssp GGGTSCS-STTCCCCTHHHHHHHSS-SCCEEEST--------------TS-------------STTEEEEEEEETTEEEE T ss_pred HHHHCCC-CCCCCCCHHHHHHHHHC-CCCCEECC--------------CC-------------CCCEEEEEEEECCCEEE T ss_conf 7630677-89986628766576616-86211046--------------65-------------68645899997694799 Q ss_pred EEEEECHHHCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCC---CCCHHHHHHHHHHHHHHHHHHHCCCCEEEEE Q ss_conf 9998330318535778999999999999862896899976888776---5212467777889999999986299889985 Q gi|254780820|r 124 AVVHEFSFIGGSIGIAAGEAIVKSCERAIAEKCPLVMFTASGGARM---QEGILSLMQLPRTTIAINMLKDAGLPYIVVL 200 (284) Q Consensus 124 v~~~df~F~GGSmG~~~geki~~a~e~A~~~~~PlI~~~~SGGaRM---qEG~~sL~qMakt~~a~~~l~~~~lP~I~vl 200 (284) +.+.+..++||.+.....+|..|.++.|-..++|||.|.+.-|.-. +|-.--+-..++.. ..+..+.+|.|+|+ T Consensus 351 viAn~~~~~~G~l~~~aa~Kaarfi~lcd~f~iPlv~lvD~pGf~~G~~~E~~gi~~~ga~l~---~A~a~a~vP~itvi 427 (548) T 2bzr_A 351 IVANQPTHFAGCLDINASEKAARFVRTCDCFNIPIVMLVDVPGFLPGTDQEYNGIIRRGAKLL---YAYGEATVPKITVI 427 (548) T ss_dssp EEEECTTSGGGCBCHHHHHHHHHHHHHHHHTTCCEEEEEEECCBCCCHHHHHTTHHHHHHHHH---HHHHHCCSCEEEEE T ss_pred EEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH---HHHHHCCCCEEEEE T ss_conf 981564133678780678999999999874389816997489878768999974999999999---99982898869999 Q ss_pred CCCCCCEEEEEECCC-----CCEEEEECCCEEECCCHHHHHHHH-CCCC---------CC--------CC----HHHHHH Q ss_conf 676420111120146-----852555314211023278878763-6778---------87--------20----215999 Q gi|254780820|r 201 TNPTTGGVTASYAML-----GDIHLAEPGAEIGFAGRRVIEQTV-REKL---------PD--------GF----QRSEYL 253 (284) Q Consensus 201 ~~pt~GGv~AS~a~l-----gDiiiaep~a~igFaG~rVi~~t~-~~~l---------p~--------~f----qtae~l 253 (284) +...+||. .++|. .|+++|-|.|.++.-||.--..++ +.++ ++ .| -++.+. T Consensus 428 ~rka~G~g--~~am~~~~~~~d~~~AwP~a~~~vm~~egaa~i~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a 505 (548) T 2bzr_A 428 TRKAYGGA--YCVMGSKDMGCDVNLAWPTAQIAVMGASGAVGFVYRQQLAEAAANGEDIDKLRLRLQQEYEDTLVNPYVA 505 (548) T ss_dssp EEEEEHHH--HHHTTCGGGTCSEEEECTTCEEESSCHHHHHHHHTCCC----------CHHHHHHHHHHHHHHHSBSHHH T ss_pred ECCCCCHH--HHHHCCCCCCCCEEEECCCCEEEECCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHH T ss_conf 78865457--6652576678887998576548507999999999899987511166587899999999999864799999 Q ss_pred HHCCCCCEEECHHHHHHHHHHHHHHHHCCC Q ss_conf 968983537358999999999999972378 Q gi|254780820|r 254 VEHGMIDRIVHRHDIPEVVSSLCKILTKSV 283 (284) Q Consensus 254 ~~~G~iD~iv~r~~l~~~i~~ll~il~~~~ 283 (284) .++|.||.||++.|.|..|...|+++.+|. T Consensus 506 a~~~~iD~VIdP~dTR~~L~~~l~~~~~k~ 535 (548) T 2bzr_A 506 AERGYVGAVIPPSHTRGYIGTALRLLERKI 535 (548) T ss_dssp HHTTSSSEECCGGGHHHHHHHHHHHTTTC- T ss_pred HHCCCCCCEECHHHHHHHHHHHHHHHHCCC T ss_conf 872887803778999999999999986156 No 16 >3n6r_B Propionyl-COA carboxylase, beta subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Roseobacter denitrificans och 114} Probab=99.71 E-value=1.4e-15 Score=134.70 Aligned_cols=202 Identities=17% Similarity=0.280 Sum_probs=159.0 Q ss_pred CCCCCCCCEECCHHHHHHHHCCCCCCCCCCCCCCCCHHCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEEEECEEEEEEE Q ss_conf 38899896243799999984556542013345687020186764203566776664216677169998787041499999 Q gi|254780820|r 47 VISSSDFHMKIPAKERLKFLFDNAKYCLLDQPQVCQDPLKFRDNKKYIDRLKENRSKTGLIDSIVSAVGNVRDFKLVAVV 126 (284) Q Consensus 47 VCp~C~~H~rl~areRi~~l~D~gsf~Ei~~~~~~~DPL~F~d~k~Y~drl~~a~~kTg~~davv~G~G~I~G~~vvv~~ 126 (284) +.| .+.-.+...|+-|+.++|+++|.|+... | ..+++||.++|+|++|.+.+ T Consensus 293 ~vP-~d~~~~yd~r~ii~~~~D~~~f~E~~~~--------------~-------------g~~ivtg~aRi~G~~VGivA 344 (531) T 3n6r_B 293 LVP-DNPNTPYDMKELIHKLADEGDFYEIQEE--------------F-------------AKNIITGFIRLEGRTVGVVA 344 (531) T ss_dssp TSC-SSTTCCCCHHHHHHHHSTTSCCEEESTT--------------S-------------STTEEEEEEEETTEEEEEEE T ss_pred CCC-CCCCCCCCHHHHHHHCCCCCCCEEEECC--------------C-------------CCCCEEEEEEECCCEEEEEC T ss_conf 478-9998865367652212567510231304--------------1-------------77614688898696799982 Q ss_pred EECHHHCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCC-----CCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEC Q ss_conf 8330318535778999999999999862896899976888776-----52124677778899999999862998899856 Q gi|254780820|r 127 HEFSFIGGSIGIAAGEAIVKSCERAIAEKCPLVMFTASGGARM-----QEGILSLMQLPRTTIAINMLKDAGLPYIVVLT 201 (284) Q Consensus 127 ~df~F~GGSmG~~~geki~~a~e~A~~~~~PlI~~~~SGGaRM-----qEG~~sL~qMakt~~a~~~l~~~~lP~I~vl~ 201 (284) .|..++||.+.....+|.+|.++.|-+.++|||.|.+.-|.-. +.|++- -.+| .+..+..+.+|.|+|++ T Consensus 345 n~~~~~~G~~~~~~a~Kaarfi~lcd~f~iPlv~lvD~pGf~~G~~aE~~Giir--~ga~---l~~A~a~a~vP~itvi~ 419 (531) T 3n6r_B 345 NQPLVLAGCLDIDSSRKAARFVRFCDAFEIPLLTLIDVPGFLPGTSQEYGGVIK--HGAK---LLYAYGEATVPMVTVIT 419 (531) T ss_dssp ECTTTGGGCBCHHHHHHHHHHHHHHHHTTCCEEEEEEECSBCCSHHHHHTTHHH--HHHH---HHHHHHHCCSCEEEEEE T ss_pred CCCHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHH--HHHH---HHHHHHCCCCCEEEEEE T ss_conf 451102687304689999999997875288369994488878898999986999--9999---99999718999899997 Q ss_pred CCCCCEEEEEECCC-----CCEEEEECCCEEECCCHHHHHHHH-CCCC--CCCC--HHH---------HHHHHCCCCCEE Q ss_conf 76420111120146-----852555314211023278878763-6778--8720--215---------999968983537 Q gi|254780820|r 202 NPTTGGVTASYAML-----GDIHLAEPGAEIGFAGRRVIEQTV-REKL--PDGF--QRS---------EYLVEHGMIDRI 262 (284) Q Consensus 202 ~pt~GGv~AS~a~l-----gDiiiaep~a~igFaG~rVi~~t~-~~~l--p~~f--qta---------e~l~~~G~iD~i 262 (284) ...+||.+ ++|. .|+++|-|.|.++.-||.--.+.+ +.++ |+.. +.+ .+..+.|+||.| T Consensus 420 rka~Gga~--~am~~~~~~~d~~~AwP~a~~~vm~~ega~~i~~~~e~~~~e~~~~~~~e~~~~~~~p~~aa~~~~iD~v 497 (531) T 3n6r_B 420 RKAYGGAY--VVMSSKHLRADFNYAWPTAEVAVMGAKGATEIIHRGDLGDPEKIAQHTADYEERFANPFVASERGFVDEV 497 (531) T ss_dssp EEEEHHHH--HHTTCGGGTCSEEEECTTCEEESSCHHHHHHHHCCTTTTSTTHHHHHHHHHHHHHSSSHHHHHHTSSSEE T ss_pred CCCCHHHH--HHHCCCCCCCCEEEECCCCEEEECCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHHHCCCCCEE T ss_conf 98641988--9742666788879997866587369999999874343479678999999999985498999865886710 Q ss_pred ECHHHHHHHHHHHHHHHHCCC Q ss_conf 358999999999999972378 Q gi|254780820|r 263 VHRHDIPEVVSSLCKILTKSV 283 (284) Q Consensus 263 v~r~~l~~~i~~ll~il~~~~ 283 (284) |++.|.|+.|...|..|..|. T Consensus 498 IdP~dTR~~l~~~l~~l~~~~ 518 (531) T 3n6r_B 498 IQPRSTRKRVARAFASLRNKS 518 (531) T ss_dssp CCGGGHHHHHHHHHHTTTTCC T ss_pred ECHHHHHHHHHHHHHHHHCCC T ss_conf 786999999999999864687 No 17 >1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain duplication, multienzyme complex, transcarboxylase; HET: MCA; 1.90A {Propionibacterium freudenreichii} SCOP: c.14.1.4 c.14.1.4 PDB: 1on9_A* Probab=99.70 E-value=1.9e-15 Score=133.85 Aligned_cols=200 Identities=20% Similarity=0.231 Sum_probs=155.1 Q ss_pred CCCEECCHHHHHHHHCCCCCCCCCCCCCCCCHHCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEEEECEEEEEEEEECHH Q ss_conf 89624379999998455654201334568702018676420356677666421667716999878704149999983303 Q gi|254780820|r 52 DFHMKIPAKERLKFLFDNAKYCLLDQPQVCQDPLKFRDNKKYIDRLKENRSKTGLIDSIVSAVGNVRDFKLVAVVHEFSF 131 (284) Q Consensus 52 ~~H~rl~areRi~~l~D~gsf~Ei~~~~~~~DPL~F~d~k~Y~drl~~a~~kTg~~davv~G~G~I~G~~vvv~~~df~F 131 (284) +.......|+-|..++|.++|.|+... | ..++|||.++|+|++|.+.+.|..+ T Consensus 285 ~~~~~yd~r~vi~~v~D~~~f~E~~~~--------------~-------------g~~~vtg~aRl~G~~VGviAn~p~~ 337 (523) T 1on3_A 285 DGKKGYDVRDVIAKIVDWGDYLEVKAG--------------Y-------------ATNLVTAFARVNGRSVGIVANQPSV 337 (523) T ss_dssp STTCCCCTHHHHHHHSGGGCEEEESTT--------------S-------------STTEEEEEEEETTEEEEEEEECTTS T ss_pred HCCCCCCHHHHEEECCCCCCEEEEECC--------------C-------------CCCHHHHHHHHCCCEEEEEECCCCC T ss_conf 046785636720204556753114645--------------3-------------6618878776459558999247632 Q ss_pred HCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCC---CCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCEE Q ss_conf 18535778999999999999862896899976888776---521246777788999999998629988998567642011 Q gi|254780820|r 132 IGGSIGIAAGEAIVKSCERAIAEKCPLVMFTASGGARM---QEGILSLMQLPRTTIAINMLKDAGLPYIVVLTNPTTGGV 208 (284) Q Consensus 132 ~GGSmG~~~geki~~a~e~A~~~~~PlI~~~~SGGaRM---qEG~~sL~qMakt~~a~~~l~~~~lP~I~vl~~pt~GGv 208 (284) .+|.+.....+|..|.++.|-..++|||.+.+.-|.-. +|-.--+-..++.. ..+..+..|.|+|++...+||- T Consensus 338 ~~G~l~~~~a~Kaarfi~lcd~~~iPlv~lvD~pGf~~G~~~E~~Gi~~~gA~~~---~A~a~a~vP~isvi~~k~~G~g 414 (523) T 1on3_A 338 MSGCLDINASDKAAEFVNFCDSFNIPLVQLVDVPGFLPGVQQEYGGIIRHGAKML---YAYSEATVPKITVVLRKAYGGS 414 (523) T ss_dssp GGGCBCHHHHHHHHHHHHHHHHTTCCEEEEEEECCBCCCHHHHHTTHHHHHHHHH---HHHHHCCSCEEEEEEEEEEHHH T ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHH---HHHHCCCCCEEEEEECCCCCHH T ss_conf 3688870678999999998874287789994278767778999976999999999---9853679987999857744502 Q ss_pred EEEECC-----CCCEEEEECCCEEECCCHHHHHHHH-C-----CCCC------------CCCHHHHHHHHCCCCCEEECH Q ss_conf 112014-----6852555314211023278878763-6-----7788------------720215999968983537358 Q gi|254780820|r 209 TASYAM-----LGDIHLAEPGAEIGFAGRRVIEQTV-R-----EKLP------------DGFQRSEYLVEHGMIDRIVHR 265 (284) Q Consensus 209 ~AS~a~-----lgDiiiaep~a~igFaG~rVi~~t~-~-----~~lp------------~~fqtae~l~~~G~iD~iv~r 265 (284) .+|| -.|+++|-|.|.++.-||.---.++ + .+-| +.+.++....++|.||.||++ T Consensus 415 --~~am~~~~~~~d~~~AwP~a~~~vm~pegaa~i~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~aa~~g~iD~VIdP 492 (523) T 1on3_A 415 --YLAMCNRDLGADAVYAWPSAEIAVMGAEGAANVIFRKEIKAADDPDAMRAEKIEEYQNAFNTPYVAAARGQVDDVIDP 492 (523) T ss_dssp --HHTTTCGGGTCSEEEECTTCEEESSCHHHHHHHHTHHHHHHSSCHHHHHHHHHHHHHHHHSSHHHHHHTTSSSEECCG T ss_pred --HHCCCCCCCCCCEEEECCCCEEEECCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHCCCCCEEECH T ss_conf --312467778878799867555984599999998741210176798999999999999875799999866788842887 Q ss_pred HHHHHHHHHHHHHHHCCC Q ss_conf 999999999999972378 Q gi|254780820|r 266 HDIPEVVSSLCKILTKSV 283 (284) Q Consensus 266 ~~l~~~i~~ll~il~~~~ 283 (284) .|.|+.|...|.++..|. T Consensus 493 ~~TR~~l~~~l~~~~~k~ 510 (523) T 1on3_A 493 ADTRRKIASALEMYATKR 510 (523) T ss_dssp GGHHHHHHHHHHHGGGCC T ss_pred HHHHHHHHHHHHHHHHCC T ss_conf 999999999999975177 No 18 >1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 2.30A {Thermotoga maritima MSB8} SCOP: c.14.1.4 c.14.1.4 Probab=99.70 E-value=2e-15 Score=133.68 Aligned_cols=202 Identities=16% Similarity=0.280 Sum_probs=155.8 Q ss_pred CCCCEECCHHHHHHHHCCCCCCCCCCCCCCCCHHCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEEEECEEEEEEEEECH Q ss_conf 98962437999999845565420133456870201867642035667766642166771699987870414999998330 Q gi|254780820|r 51 SDFHMKIPAKERLKFLFDNAKYCLLDQPQVCQDPLKFRDNKKYIDRLKENRSKTGLIDSIVSAVGNVRDFKLVAVVHEFS 130 (284) Q Consensus 51 C~~H~rl~areRi~~l~D~gsf~Ei~~~~~~~DPL~F~d~k~Y~drl~~a~~kTg~~davv~G~G~I~G~~vvv~~~df~ 130 (284) .+..-....|+-|+.++|.++|.|+... | ..++|||.++|+|+||.+++.+.. T Consensus 288 ~~~~~~yD~r~vi~~l~D~~~f~E~~~~--------------~-------------g~~vvtg~arl~G~pVgviAn~~~ 340 (527) T 1vrg_A 288 DNPNKGYDVRDVIKRVVDHGEFFEVQPY--------------F-------------AKNIVIGFARIQGKTVGIVANQPS 340 (527) T ss_dssp SSTTSCCCTHHHHHHHSGGGCCEEESTT--------------S-------------STTEEEEEEEETTEEEEEEEECTT T ss_pred CCCCCCCCHHHHHHHHCCCCCHHHHHCC--------------C-------------CCCEEEEEEEECCEEEEEEECCCC T ss_conf 9989887899999984688512000004--------------6-------------885799999999888889833663 Q ss_pred HHCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCC-----CCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCC Q ss_conf 318535778999999999999862896899976888776-----521246777788999999998629988998567642 Q gi|254780820|r 131 FIGGSIGIAAGEAIVKSCERAIAEKCPLVMFTASGGARM-----QEGILSLMQLPRTTIAINMLKDAGLPYIVVLTNPTT 205 (284) Q Consensus 131 F~GGSmG~~~geki~~a~e~A~~~~~PlI~~~~SGGaRM-----qEG~~sL~qMakt~~a~~~l~~~~lP~I~vl~~pt~ 205 (284) +++|.+.....+|..|.++.|-+.++|||.|.+.-|+-. +.|++. ..++. +..+.++.+|.|+|+++..+ T Consensus 341 ~~~G~~~~~~a~Kaarfi~lcd~~~lPlv~lvDtpGf~~G~~aE~~G~~~--~gA~l---~~a~a~~~vP~i~vi~gk~~ 415 (527) T 1vrg_A 341 VLAGVLDIDSSDKAARFIRFLDAFNIPILTFVDTPGYLPGVAQEHGGIIR--HGAKL---LYAYSEATVPKITVILRKAY 415 (527) T ss_dssp SGGGCBCHHHHHHHHHHHHHHHHTTCCEEEEEEECCBCCCHHHHHTTHHH--HHHHH---HHHHHHCCSCEEEEEEEEEE T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHH--HHHHH---HHHHHHCCCCEEEEEECCCC T ss_conf 33788750478999999998514598669995068868878999974999--99999---99998389987999868866 Q ss_pred CEEEEEEC---CCCCEEEEECCCEEECCCHHHHHHHH-C-----CCCCCC------------CHHHHHHHHCCCCCEEEC Q ss_conf 01111201---46852555314211023278878763-6-----778872------------021599996898353735 Q gi|254780820|r 206 GGVTASYA---MLGDIHLAEPGAEIGFAGRRVIEQTV-R-----EKLPDG------------FQRSEYLVEHGMIDRIVH 264 (284) Q Consensus 206 GGv~AS~a---~lgDiiiaep~a~igFaG~rVi~~t~-~-----~~lp~~------------fqtae~l~~~G~iD~iv~ 264 (284) ||.+...+ +-.|+++|-|.|.++.-+|.-...++ + .+-|+. +-.+....+.|+||.||+ T Consensus 416 Ggg~~am~~~~~~~d~~~Awp~a~~~vm~pegaa~i~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~iD~VId 495 (527) T 1vrg_A 416 GGAYIAMGSKHLGADMVLAWPSAEIAVMGPEGAANIIFKREIEASSNPEETRRKLIEEYKQQFANPYIAASRGYVDMVID 495 (527) T ss_dssp HHHHHHTTCGGGTCSEEEECTTCEEESSCHHHHHHHHTHHHHHHSSCHHHHHHHHHHHHHHHTSSHHHHHHTTSSSEECC T ss_pred CHHHHHCCCCCCCCCEEEECCCCEEEECCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHCCCCCEEEC T ss_conf 58776106777788889997877186169999999884312115579899999999999998579999987578881088 Q ss_pred HHHHHHHHHHHHHHHHCCCC Q ss_conf 89999999999999723789 Q gi|254780820|r 265 RHDIPEVVSSLCKILTKSVQ 284 (284) Q Consensus 265 r~~l~~~i~~ll~il~~~~~ 284 (284) +.+.|+.|...|+++..|.+ T Consensus 496 P~~tR~~l~~~l~~~~~k~~ 515 (527) T 1vrg_A 496 PRETRKYIMRALEVCETKVE 515 (527) T ss_dssp GGGHHHHHHHHHHHHTTCCC T ss_pred HHHHHHHHHHHHHHHHHCCC T ss_conf 89999999999999760642 No 19 >3gf3_A Glutaconyl-COA decarboxylase subunit A; sodium ION transport, biotin, glutamate fermentation, lyase; HET: COO; 1.75A {Clostridium symbiosum} PDB: 3gf7_A 3glm_A* 3gma_A* Probab=99.65 E-value=4.5e-14 Score=123.67 Aligned_cols=200 Identities=15% Similarity=0.227 Sum_probs=150.9 Q ss_pred CCCCEECCHHHHHHHHCCCCCCCCCCCCCCCCHHCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEEEECEEEEEEEE--- Q ss_conf 98962437999999845565420133456870201867642035667766642166771699987870414999998--- Q gi|254780820|r 51 SDFHMKIPAKERLKFLFDNAKYCLLDQPQVCQDPLKFRDNKKYIDRLKENRSKTGLIDSIVSAVGNVRDFKLVAVVH--- 127 (284) Q Consensus 51 C~~H~rl~areRi~~l~D~gsf~Ei~~~~~~~DPL~F~d~k~Y~drl~~a~~kTg~~davv~G~G~I~G~~vvv~~~--- 127 (284) .+..-+...|+-|+.++|.++|.|+... | ..++|||.++|+|++|.+.+. T Consensus 318 ~~~~~~yD~r~vi~~i~D~~sf~E~~~~--------------~-------------g~~vvtG~aRl~G~pVGviAn~~~ 370 (588) T 3gf3_A 318 MNQKRPYDIYEVIARLFDNSEFSEYKKG--------------Y-------------GPEMVTGLAKVNGLLVGVIANVQG 370 (588) T ss_dssp SSTTCCCCHHHHHHHHSGGGBCEESSTT--------------S-------------STTEEEEEEEETTEEEEEEEECCS T ss_pred CCCCCCCCHHHHHHHCCCCCCEEEECCC--------------C-------------CCCCEEEEEEECCCEEEEEECCCC T ss_conf 0467777499999864555532320355--------------5-------------776326677648947999951455 Q ss_pred ----------ECHHHCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCC-----CCCHHHHHHHHHHHHHHHHHHHC Q ss_conf ----------330318535778999999999999862896899976888776-----52124677778899999999862 Q gi|254780820|r 128 ----------EFSFIGGSIGIAAGEAIVKSCERAIAEKCPLVMFTASGGARM-----QEGILSLMQLPRTTIAINMLKDA 192 (284) Q Consensus 128 ----------df~F~GGSmG~~~geki~~a~e~A~~~~~PlI~~~~SGGaRM-----qEG~~sL~qMakt~~a~~~l~~~ 192 (284) +..++||.+.....+|.+|.++.+-..++|||.|.+.-|.-. +.|++ -..+|...|+ .++ T Consensus 371 ~~~~~p~~~~~~~~~~G~l~~~aa~Kaarfi~lcd~f~lPlv~lvD~pGf~~G~~~E~~Gii--~~gA~~~~A~---a~a 445 (588) T 3gf3_A 371 LLMNYPEYKQNSVGIGGKLYRQGLIKMNEFVTLCARDRIPLIWLQDTTGIDVGDEAEKAELL--GLGQSLIYSI---ENS 445 (588) T ss_dssp EEETCCTTSSSCEEETTEECHHHHHHHHHHHHHHHHTTCCEEEEECCCEECCSHHHHHTTHH--HHHHHHHHHH---HHH T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHH--HHHHHHHHHH---HCC T ss_conf 34456543356200378667778999999998515479876999357887787688871499--9999999998---717 Q ss_pred CCCEEEEECCCCCCEEEEEECCC-----CCEEEEE--CCCEEECCCHHHHHHHH-C------CCCCCCC----------- Q ss_conf 99889985676420111120146-----8525553--14211023278878763-6------7788720----------- Q gi|254780820|r 193 GLPYIVVLTNPTTGGVTASYAML-----GDIHLAE--PGAEIGFAGRRVIEQTV-R------EKLPDGF----------- 247 (284) Q Consensus 193 ~lP~I~vl~~pt~GGv~AS~a~l-----gDiiiae--p~a~igFaG~rVi~~t~-~------~~lp~~f----------- 247 (284) .+|.|+|++...+||. .++|. .|++++- |.|.||.-||.-.-+++ + ++-.++. T Consensus 446 ~vP~isvi~rka~Ggg--~~am~~~~~~~d~~~a~~~p~a~~~vm~~ega~~i~~~~e~~~a~~~~~~~~~~~~~~~~~~ 523 (588) T 3gf3_A 446 KLPSLEITIRKASAAA--HYVLGGPQGNNTNVFSIGTGACEYYVMPGETAANAMYSRKLVKAKKAGEDLQPIIGKMNDMI 523 (588) T ss_dssp CSCEEEEESSEEETTH--HHHTTCTTCTTTEEEEEECTTCEEESSCHHHHHHHHHHHHHHHC-------CHHHHHHHHHH T ss_pred CCCEEEEEECCCCCHH--HHHHCCCCCCCCEEEECCCCCCEEECCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH T ss_conf 9997999978753145--66524755688646876788762842589999999999999753167714458999999999 Q ss_pred ------HHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHCCCC Q ss_conf ------2159999689835373589999999999999723789 Q gi|254780820|r 248 ------QRSEYLVEHGMIDRIVHRHDIPEVVSSLCKILTKSVQ 284 (284) Q Consensus 248 ------qtae~l~~~G~iD~iv~r~~l~~~i~~ll~il~~~~~ 284 (284) .++.+.-++|.||.||++.|.|..|...|+++..|.| T Consensus 524 ~~~~~~~~p~~aa~~~~vD~vIdP~~TR~~l~~~l~~~~~~~~ 566 (588) T 3gf3_A 524 QMYTDKSRPKYCTEKGMVDEIVDMTEVRPYIQAFTEAAYQNPQ 566 (588) T ss_dssp HHHHHTTSHHHHHHTTSSSEECCGGGHHHHHHHHHHHHTTSCS T ss_pred HHHHHHCCHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHHCCC T ss_conf 9999846999998657878127839999999999999985876 No 20 >1pix_A Glutaconyl-COA decarboxylase A subunit; biotin-dependent ION pump, carboxyltransferase, lyase; 2.20A {Acidaminococcus fermentans} SCOP: c.14.1.4 c.14.1.4 Probab=99.64 E-value=1.7e-14 Score=126.80 Aligned_cols=203 Identities=16% Similarity=0.246 Sum_probs=153.2 Q ss_pred CCCCCCCCEECCHHHHHHHHCCCCCCCCCCCCCCCCHHCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEEEECEEEEEEE Q ss_conf 38899896243799999984556542013345687020186764203566776664216677169998787041499999 Q gi|254780820|r 47 VISSSDFHMKIPAKERLKFLFDNAKYCLLDQPQVCQDPLKFRDNKKYIDRLKENRSKTGLIDSIVSAVGNVRDFKLVAVV 126 (284) Q Consensus 47 VCp~C~~H~rl~areRi~~l~D~gsf~Ei~~~~~~~DPL~F~d~k~Y~drl~~a~~kTg~~davv~G~G~I~G~~vvv~~ 126 (284) +.|. +.--....|+-|..++|+++|.|+-.. | ..++|||.++|+|+||.+++ T Consensus 312 ~vp~-d~~~~yd~r~vi~~i~D~~~f~E~~~~--------------~-------------g~~iVtG~aRl~G~pVGVIA 363 (587) T 1pix_A 312 MVPL-NDKRAYDIYNVIARLFDNSELHEYKKG--------------Y-------------GPEMVTGLAKVNGLLVGVVA 363 (587) T ss_dssp HSCS-STTSCCCHHHHHHTTSGGGBCEESSTT--------------S-------------STTEEEEEEEETTEEEEEEE T ss_pred CCCC-CCCCCCCCEECCCCCCCCHHHHCCCCC--------------C-------------CCCEEEEEEEECCCEEEEEE T ss_conf 1444-555676630000002332011013566--------------7-------------88537899986796799995 Q ss_pred EECHHH--------------CCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCC-----CCCHHHHHHHHHHHHHHH Q ss_conf 833031--------------8535778999999999999862896899976888776-----521246777788999999 Q gi|254780820|r 127 HEFSFI--------------GGSIGIAAGEAIVKSCERAIAEKCPLVMFTASGGARM-----QEGILSLMQLPRTTIAIN 187 (284) Q Consensus 127 ~df~F~--------------GGSmG~~~geki~~a~e~A~~~~~PlI~~~~SGGaRM-----qEG~~sL~qMakt~~a~~ 187 (284) .+..++ ||++.+...+|.+|.++.+-..++|||.|.+.-|.-. +.|++- .-+|. +. T Consensus 364 n~~~~~~~~~~~~a~~~~~~gG~l~~~sa~Kaarfi~lcd~~~iPlv~lvD~pGf~~G~~~E~~Giir--~gA~l---~~ 438 (587) T 1pix_A 364 NVQGLLMNYPEYKAAGSVGIGGKLYRQGLVKMNEFVTLCARDRLPIVWIQDTTGIDVGNDAEKAELLG--LGQSL---IY 438 (587) T ss_dssp ECCSEETTCCTTSCTTCCEETTEECHHHHHHHHHHHHHHHHTTCCEEEEECCCEECCSHHHHHTTHHH--HHHHH---HH T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHH--HHHHH---HH T ss_conf 25543445543222333356896687899999999998764299668971588878876999988999--99999---98 Q ss_pred HHHHCCCCEEEEECCCCCCEEEEEECCCC-----CE--EEEECCCEEECCCHHHHHHHH-----------CCCCC----- Q ss_conf 99862998899856764201111201468-----52--555314211023278878763-----------67788----- Q gi|254780820|r 188 MLKDAGLPYIVVLTNPTTGGVTASYAMLG-----DI--HLAEPGAEIGFAGRRVIEQTV-----------REKLP----- 244 (284) Q Consensus 188 ~l~~~~lP~I~vl~~pt~GGv~AS~a~lg-----Di--iiaep~a~igFaG~rVi~~t~-----------~~~lp----- 244 (284) .+.++.+|.|+|++...+|| |.++|.+ |+ ..+-|.+.|+.-||.-...+. ++++. T Consensus 439 A~a~a~vP~itvi~rkayGg--a~~am~~~~~~~~~~~~~a~p~a~i~vm~~e~av~i~~~~~~~~~~~~~~~~~~~~~~ 516 (587) T 1pix_A 439 SIQTSHIPQFEITLRKGTAA--AHYVLGGPQGNDTNAFSIGTAATEIAVMNGETAATAMYSRRLAKDRKAGKDLQPTIDK 516 (587) T ss_dssp HHHTCCCCEEEEECSEEETT--HHHHTTCTTCTTTEEEEEECTTCEEESSCHHHHHHHHHHHHHHHHHHTTCCCHHHHHH T ss_pred HHHHCCCCEEEEEECCCCHH--HHHHHCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHH T ss_conf 88737999799997985316--7787347656886137721887626157999999999888765221445244589999 Q ss_pred -----CCC---HHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHCCCC Q ss_conf -----720---2159999689835373589999999999999723789 Q gi|254780820|r 245 -----DGF---QRSEYLVEHGMIDRIVHRHDIPEVVSSLCKILTKSVQ 284 (284) Q Consensus 245 -----~~f---qtae~l~~~G~iD~iv~r~~l~~~i~~ll~il~~~~~ 284 (284) +.| .++...-++|.||.|+++.|.|..|...|..+.+|.+ T Consensus 517 ~~~~~~~~~~~~~p~~aa~~g~vD~iIdP~~TR~~l~~~l~~~~~~~~ 564 (587) T 1pix_A 517 MNNLIQAFYTKSRPKVCAELGLVDEIVDMNKIRGYVEAFTEAAYQNPE 564 (587) T ss_dssp HHHHHHHHHHTTSHHHHHHHTSSSEECCTTTHHHHHHHHHHHHTTSCS T ss_pred HHHHHHHHHHHCCHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHHCCC T ss_conf 999999998736999999728868128839999999999999985866 No 21 >2f9i_A Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus} Probab=99.52 E-value=7.4e-12 Score=107.25 Aligned_cols=205 Identities=11% Similarity=0.106 Sum_probs=155.3 Q ss_pred CCCCEECCHHHHHHHHCCCCCCCCCCCCCCCCHHCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEEEECEEEEEEEEEC- Q ss_conf 9896243799999984556542013345687020186764203566776664216677169998787041499999833- Q gi|254780820|r 51 SDFHMKIPAKERLKFLFDNAKYCLLDQPQVCQDPLKFRDNKKYIDRLKENRSKTGLIDSIVSAVGNVRDFKLVAVVHEF- 129 (284) Q Consensus 51 C~~H~rl~areRi~~l~D~gsf~Ei~~~~~~~DPL~F~d~k~Y~drl~~a~~kTg~~davv~G~G~I~G~~vvv~~~df- 129 (284) +-|.-|-.+.++|+.+||+ |.|+.-+-. | +-+.|+++|.|+++|++|++..++. T Consensus 73 ARhp~RP~~~DyI~~ifdd--f~eLhGDR~------~-----------------~dD~aii~g~a~~~g~~v~vig~~kg 127 (327) T 2f9i_A 73 ARLQERPTTLDYIPYIFDS--FMELHGDRN------F-----------------RDDPAMIGGIGFLNGRAVTVIGQQRG 127 (327) T ss_dssp HTBTTSCCHHHHHHHHCEE--EEECCCCSS------S-----------------CCCTTEEEEEEEETTEEEEEEEECCC T ss_pred HHCCCCCCHHHHHHHHCCC--CEEEECCCC------C-----------------CCCHHHHHHHHHCCCEEEEEEEEECC T ss_conf 7478999779999873466--478505655------6-----------------76622445435407805899975057 Q ss_pred -------HHHCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECC Q ss_conf -------0318535778999999999999862896899976888776521246777788999999998629988998567 Q gi|254780820|r 130 -------SFIGGSIGIAAGEAIVKSCERAIAEKCPLVMFTASGGARMQEGILSLMQLPRTTIAINMLKDAGLPYIVVLTN 202 (284) Q Consensus 130 -------~F~GGSmG~~~geki~~a~e~A~~~~~PlI~~~~SGGaRMqEG~~sL~qMakt~~a~~~l~~~~lP~I~vl~~ 202 (284) ...+|...+..-+|-.|++.+|-+-++|+|.|.++-||---.+.-.--|-..+...+..+....+|.|||+++ T Consensus 128 ~~~~e~~~~nfGm~~pegyrKA~R~m~~Aekf~~Piit~IDTpGA~pg~~aEe~Gqa~aIA~~l~~~~~l~vP~isvIiG 207 (327) T 2f9i_A 128 KDTKDNIYRNFGMAHPEGYRKALRLMKQAEKFNRPIFTFIDTKGAYPGKAAEERGQSESIATNLIEMASLKVPVIAIVIG 207 (327) T ss_dssp SSHHHHHHTGGGCCCHHHHHHHHHHHHHHHHTTCCEEEEEEESCSCCCHHHHHTTHHHHHHHHHHHHHTCSSCEEEEEEE T ss_pred CCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEC T ss_conf 66541103228999979999999999999974997799842798678877441489999999999985899997999975 Q ss_pred C-CCCEEEEEECCCCCEEEEECCCEEECCCHHHHHHHHCCCCCCC-------CHHHHHHHHCCCCCEEEC-H-------- Q ss_conf 6-4201111201468525553142110232788787636778872-------021599996898353735-8-------- Q gi|254780820|r 203 P-TTGGVTASYAMLGDIHLAEPGAEIGFAGRRVIEQTVREKLPDG-------FQRSEYLVEHGMIDRIVH-R-------- 265 (284) Q Consensus 203 p-t~GGv~AS~a~lgDiiiaep~a~igFaG~rVi~~t~~~~lp~~-------fqtae~l~~~G~iD~iv~-r-------- 265 (284) - +.||..| -+.+|.+++-+.|.....+|.=-...+-.+--.- --||.-|++.|.||.||+ + T Consensus 208 EGgSGGAla--l~~ad~v~mle~a~ysVisPEg~asIlwkd~~~a~eAAe~lklTA~dLl~lGiID~II~EP~GgAh~d~ 285 (327) T 2f9i_A 208 EGGSGGALG--IGIANKVLMLENSTYSVISPEGAAALLWKDSNLAKIAAETMKITAHDIKQLGIIDDVISEPLGGAHKDI 285 (327) T ss_dssp EEBHHHHHT--TCCCSEEEEETTCBCBSSCHHHHHHHHSSCGGGHHHHHHHHTCBHHHHHHTTSSSEEECCCTTCGGGCH T ss_pred CCCCCCEEE--EECCCEEEEECCEEEEEECHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHCCCCEEECCCCCCCCCCCH T ss_conf 755531134--533784887457189995667777885458125899998620799999977997287169998553599 Q ss_pred ----HHHHHHHHHHHHHHHCC Q ss_conf ----99999999999997237 Q gi|254780820|r 266 ----HDIPEVVSSLCKILTKS 282 (284) Q Consensus 266 ----~~l~~~i~~ll~il~~~ 282 (284) +.+|+.|.+-|.-|.+. T Consensus 286 ~~~~~~lk~~i~~~L~~L~~~ 306 (327) T 2f9i_A 286 EQQALAIKSAFVAQLDSLESL 306 (327) T ss_dssp HHHHHHHHHHHHHHHHTTTTC T ss_pred HHHHHHHHHHHHHHHHHHHCC T ss_conf 999999999999999999779 No 22 >3ff6_A Acetyl-COA carboxylase 2; ACC2, ACC, metabolic disorder, fatty acid metabolism, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis; HET: RCP; 3.19A {Homo sapiens} Probab=99.48 E-value=4.7e-12 Score=108.69 Aligned_cols=167 Identities=16% Similarity=0.193 Sum_probs=125.3 Q ss_pred CCCEEEEEEEEECEEEEEEEEECHHH---------------------CCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCC Q ss_conf 77169998787041499999833031---------------------853577899999999999986289689997688 Q gi|254780820|r 107 IDSIVSAVGNVRDFKLVAVVHEFSFI---------------------GGSIGIAAGEAIVKSCERAIAEKCPLVMFTASG 165 (284) Q Consensus 107 ~davv~G~G~I~G~~vvv~~~df~F~---------------------GGSmG~~~geki~~a~e~A~~~~~PlI~~~~SG 165 (284) ..++|||.++|+|+||.+++.+.++. ||.+.+....|.+|++..|-+.++|||+|...- T Consensus 388 a~~vVtG~ARLgG~pVGVIAne~~~~~~~~padpa~~~s~~~~~~~~GGv~~pdsa~KaArfI~lcd~~~lPLv~LvD~p 467 (760) T 3ff6_A 388 AQTVVTGRARLGGIPVGVIAVETRTVEVAVPADPANLDSEAKIIQQAGQVWFPDSAYKTAQAIKDFNREKLPLMIFANWR 467 (760) T ss_dssp STTEEEEEEEETTEEEEEEEECCSCEEEEECCCTTCSSCCCEEEEECTTCBCHHHHHHHHHHHHHHHHTTCCEEEECCCC T ss_pred CCCEEEEEEEECCEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCC T ss_conf 47658899999998899997567534455677855531256666531782557999999999998454699859995488 Q ss_pred CCC-----CCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCC--CEEEEEECCCC-------CEEEEECCCEEECCC Q ss_conf 877-----6521246777788999999998629988998567642--01111201468-------525553142110232 Q gi|254780820|r 166 GAR-----MQEGILSLMQLPRTTIAINMLKDAGLPYIVVLTNPTT--GGVTASYAMLG-------DIHLAEPGAEIGFAG 231 (284) Q Consensus 166 GaR-----MqEG~~sL~qMakt~~a~~~l~~~~lP~I~vl~~pt~--GGv~AS~a~lg-------Diiiaep~a~igFaG 231 (284) |.- |+.|++. ..++. +..+.++..|.|+|+..-.. || +|.+++ |..+|-|.|.+|.-| T Consensus 468 GF~~G~~~E~~Gilk--~GA~i---v~Ala~~~vP~itvI~~~g~~~GG---a~vv~~~~~~~~~~~vyAwp~A~~gVl~ 539 (760) T 3ff6_A 468 GFSGGMKDMYDQVLK--FGAYI---VDGLRQYKQPILIYIPPYAELRGG---SWVVIDATINPLCIEMYADKESRGGVLE 539 (760) T ss_dssp CBCCSHHHHHTTHHH--HHHHH---HHHHHTCCSCEEEEECTTCEEEHH---HHHTTCGGGSTTTEEEEEETTCEEESSC T ss_pred CCCCCHHHHHHHHHH--HHHHH---HHHHHCCCCCEEEEEECCCEECCC---CEEECCCCCCCCCCEEEECCCCEEECCC T ss_conf 766668999848999--99999---999970899879999587353364---4464166557766558886620063478 Q ss_pred HHHHHHHH-CC-------------------C-----CCC-----------------------------C-CHHHHHHHHC Q ss_conf 78878763-67-------------------7-----887-----------------------------2-0215999968 Q gi|254780820|r 232 RRVIEQTV-RE-------------------K-----LPD-----------------------------G-FQRSEYLVEH 256 (284) Q Consensus 232 ~rVi~~t~-~~-------------------~-----lp~-----------------------------~-fqtae~l~~~ 256 (284) |.-..+.. +. + .++ + +-++....++ T Consensus 540 pegav~I~fr~~~~~~~~~r~d~~~~~l~~~l~~~~~~~~~~~~~~~~~~~re~~l~~~y~~va~~fadlhd~~~raa~~ 619 (760) T 3ff6_A 540 PEGTVEIKFRKKDLIKSMRRIDPAYKKLMEQLGEPDLSDKDRKDLEGRLKAREDLLLPIYHQVAVQFADFHDTPGRMLEK 619 (760) T ss_dssp HHHHHHHHSCHHHHHHHHHHHCGGGGHHHHHHTSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSHHHHHHT T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHC T ss_conf 99987867501544433310005677888874144433567888999999999887788899999999851689999965 Q ss_pred CCCCEEECHHHHHHHHHHHHHHHHC Q ss_conf 9835373589999999999999723 Q gi|254780820|r 257 GMIDRIVHRHDIPEVVSSLCKILTK 281 (284) Q Consensus 257 G~iD~iv~r~~l~~~i~~ll~il~~ 281 (284) |.||.||+..+.|..|..-|+-++. T Consensus 620 G~Id~vI~p~~tR~~l~~~Lrr~l~ 644 (760) T 3ff6_A 620 GVISDILEWKTARTFLYWRLRRLLL 644 (760) T ss_dssp TSSSEEECGGGHHHHHHHHHHHHHH T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHH T ss_conf 8177305859999999999999885 No 23 >2f9y_A Acetyl-COA carboxylase, carboxyltransferase alpha chain; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4 Probab=99.47 E-value=1.2e-11 Score=105.84 Aligned_cols=203 Identities=13% Similarity=0.081 Sum_probs=152.2 Q ss_pred CCCCEECCHHHHHHHHCCCCCCCCCCCCCCCCHHCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEEEECEEEEEEEEECH Q ss_conf 98962437999999845565420133456870201867642035667766642166771699987870414999998330 Q gi|254780820|r 51 SDFHMKIPAKERLKFLFDNAKYCLLDQPQVCQDPLKFRDNKKYIDRLKENRSKTGLIDSIVSAVGNVRDFKLVAVVHEFS 130 (284) Q Consensus 51 C~~H~rl~areRi~~l~D~gsf~Ei~~~~~~~DPL~F~d~k~Y~drl~~a~~kTg~~davv~G~G~I~G~~vvv~~~df~ 130 (284) .-|..|-.+.++|+.+||+ |.|+..+-.. +-+.|++.|.|+++|++|++..++.. T Consensus 87 ARhP~RP~~~DyI~~lf~d--f~eL~GDr~~-----------------------~dD~aii~G~ar~~g~~v~vig~~kg 141 (339) T 2f9y_A 87 ARHPQRPYTLDYVRLAFDE--FDELAGDRAY-----------------------ADDKAIVGGIARLDGRPVMIIGHQKG 141 (339) T ss_dssp HTCTTCCCHHHHHHHHCEE--EEECCCCSSS-----------------------CCCTTEEEEEEEETTEEEEEEEECCC T ss_pred HHCCCCCCHHHHHHHCCCC--EEEECCCCCC-----------------------CCCHHHHHHEEEEECCEEEEEEECCC T ss_conf 7189996579999754674--6993157655-----------------------65442431203650553799862267 Q ss_pred H--------HCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHH--HHHHHHHHHHHHHHHHCCCCEEEEE Q ss_conf 3--------18535778999999999999862896899976888776521246--7777889999999986299889985 Q gi|254780820|r 131 F--------IGGSIGIAAGEAIVKSCERAIAEKCPLVMFTASGGARMQEGILS--LMQLPRTTIAINMLKDAGLPYIVVL 200 (284) Q Consensus 131 F--------~GGSmG~~~geki~~a~e~A~~~~~PlI~~~~SGGaRMqEG~~s--L~qMakt~~a~~~l~~~~lP~I~vl 200 (284) - ..|.+.+..-+|..|.+..|-+-++|+|.|.++-||-- |+-+ --|--.+..-+..+.+..+|.|+|+ T Consensus 142 ~~~~~~~~~nfG~~~pegyrKA~R~m~laekf~iPIit~vDTpGa~p--G~~aEerG~~~aiA~~l~~~~~l~VP~IsvV 219 (339) T 2f9y_A 142 RETKEKIRRNFGMPAPEGYRKALRLMQMAERFKMPIITFIDTPGAYP--GVGAEERGQSEAIARNLREMSRLGVPVVCTV 219 (339) T ss_dssp SSTTHHHHTGGGCCCHHHHHHHHHHHHHHHHTTCCEEEEEEESCSCC--SHHHHHTTHHHHHHHHHHHHHTCSSCEEEEE T ss_pred CCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCC--CCHHHHCCHHHHHHHHHHHHHCCCCCEEEEE T ss_conf 76232100268888879999999999999973996699852798688--7000223799999999999976999879999 Q ss_pred CCCCCCEEEEEECCCCCEEEEECCCEEECCCHHHHHHHHCCCCCCCC-------HHHHHHHHCCCCCEEEC-H------- Q ss_conf 67642011112014685255531421102327887876367788720-------21599996898353735-8------- Q gi|254780820|r 201 TNPTTGGVTASYAMLGDIHLAEPGAEIGFAGRRVIEQTVREKLPDGF-------QRSEYLVEHGMIDRIVH-R------- 265 (284) Q Consensus 201 ~~pt~GGv~AS~a~lgDiiiaep~a~igFaG~rVi~~t~~~~lp~~f-------qtae~l~~~G~iD~iv~-r------- 265 (284) ++-.+||-+... ..+|.+++-+.|.+...+|.=-...+-.+-...- .||.-|++.|.||.||+ + T Consensus 220 igeg~sGGAlam-~~~D~vlmle~A~ySVisPEg~AsILwrd~~~a~~AAe~lkita~dl~~~giID~II~EP~ggAhrd 298 (339) T 2f9y_A 220 IGEGGSGGALAI-GVGDKVNMLQYSTYSVISPEGCASILWKSADKAPLAAEAMGIIRPRLKELKLIDSIIPEPLGGAHRN 298 (339) T ss_dssp EEEEEHHHHHTT-CCCSEEEECTTCEEESSCHHHHHHHHSSCSTTHHHHHHHHTCSHHHHHTTTSCSCCCCCSTTCGGGC T ss_pred ECCCCCCCCEEE-CCCCHHHCCHHHHHEEECHHHCHHHCCCCHHHHHHHHHHHHHCHHHHHHCCCCEEEECCCCCCCCCC T ss_conf 776445432111-3521431230225036243321000047712459999998737999997799718705899856469 Q ss_pred -----HHHHHHHHHHHHHHHC Q ss_conf -----9999999999999723 Q gi|254780820|r 266 -----HDIPEVVSSLCKILTK 281 (284) Q Consensus 266 -----~~l~~~i~~ll~il~~ 281 (284) ..+|..|.+-|+-|.+ T Consensus 299 ~~~~~~~l~~~i~~~L~~L~~ 319 (339) T 2f9y_A 299 PEAMAASLKAQLLADLADLDV 319 (339) T ss_dssp HHHHHHHHHHHHHHHTTTTTT T ss_pred HHHHHHHHHHHHHHHHHHHHC T ss_conf 999999999999999999967 No 24 >3k8x_A Acetyl-COA carboxylase; transferase, carboxyltransferase, AC tepraloxydim, ATP-binding, biotin, cytoplasm, fatty acid biosynthesis; HET: B89; 2.30A {Saccharomyces cerevisiae} PDB: 1w2x_A* 3h0s_A* 3h0j_A* 3h0q_A* 1od2_A* 1od4_A* 1uyr_A* 1uys_A* 1uyt_A 1uyv_A Probab=99.36 E-value=9.1e-11 Score=99.20 Aligned_cols=191 Identities=16% Similarity=0.176 Sum_probs=130.4 Q ss_pred ECCHHHHHH----------HHCCCCCCCCCCCCCCCCHHCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEEEECEEEEEE Q ss_conf 437999999----------8455654201334568702018676420356677666421667716999878704149999 Q gi|254780820|r 56 KIPAKERLK----------FLFDNAKYCLLDQPQVCQDPLKFRDNKKYIDRLKENRSKTGLIDSIVSAVGNVRDFKLVAV 125 (284) Q Consensus 56 rl~areRi~----------~l~D~gsf~Ei~~~~~~~DPL~F~d~k~Y~drl~~a~~kTg~~davv~G~G~I~G~~vvv~ 125 (284) ...+|+-|+ -++|.++|.|+-. +...++|||.++|+|+||.+. T Consensus 365 pyD~r~vI~~~~~~~~~~~~i~D~~sF~E~~~---------------------------~~a~~vVtG~ARLgG~pVGVI 417 (758) T 3k8x_A 365 TYDVRWMIEGRETESGFEYGLFDKGSFFETLS---------------------------GWAKGVVVGRARLGGIPLGVI 417 (758) T ss_dssp CCCHHHHHHCEEETTEEECCSSCTTCCEEEST---------------------------TSCTTEEEEEEEETTEEEEEE T ss_pred CCCCEEEECCCCCCCCCCEEEEECCCEEECCC---------------------------CCCCCEEEEEEEECCEEEEEE T ss_conf 98640564056776544405772664242246---------------------------665754899999999789999 Q ss_pred EEECHHHCCC---------------------CCHHHHHHHHHHH-HHHHHHCCCEEEEECCCCCC-----CCCCHHHHHH Q ss_conf 9833031853---------------------5778999999999-99986289689997688877-----6521246777 Q gi|254780820|r 126 VHEFSFIGGS---------------------IGIAAGEAIVKSC-ERAIAEKCPLVMFTASGGAR-----MQEGILSLMQ 178 (284) Q Consensus 126 ~~df~F~GGS---------------------mG~~~geki~~a~-e~A~~~~~PlI~~~~SGGaR-----MqEG~~sL~q 178 (284) +.|.++++|. +-+-.+.|.++.+ +.+-..++|||.|.+.-|.- |+.|++- . T Consensus 418 An~~~~~~g~~~aDpa~~~s~~~~~~~aGgv~~p~sa~K~ArfI~~lcd~~~LPLv~LvDtpGF~~G~~aE~~Giik--~ 495 (758) T 3k8x_A 418 GVETRTVENLIPADPANPNSAETLIQEPGQVWHPNSAFKTAQAINDFNNGEQLPMMILANWRGFSGGQRDMFNEVLK--Y 495 (758) T ss_dssp EECCSCEEEEECCCTTSTTCCCEEEEECTTEECHHHHHHHHHHHHHHHHTSCCCEEECCCCCEECCSHHHHHTTHHH--H T ss_pred EECCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHH--H T ss_conf 75665233545687445420334443057856706899999999999861288669997188877678999833999--9 Q ss_pred HHHHHHHHHHHHHCCCCEEEEE--CCCCCCEEEEEE--CCCCC-E-EEEECCCEEECCCHHHHHHHH-C----------- Q ss_conf 7889999999986299889985--676420111120--14685-2-555314211023278878763-6----------- Q gi|254780820|r 179 LPRTTIAINMLKDAGLPYIVVL--TNPTTGGVTASY--AMLGD-I-HLAEPGAEIGFAGRRVIEQTV-R----------- 240 (284) Q Consensus 179 Makt~~a~~~l~~~~lP~I~vl--~~pt~GGv~AS~--a~lgD-i-iiaep~a~igFaG~rVi~~t~-~----------- 240 (284) .++.. ..+.++.+|.|+|+ +.-..||.++.. ...++ + .+|-|.|.+|.-||.-.-... + T Consensus 496 GA~iv---~Ala~a~vP~itvI~~~g~~~GGayvv~~~~~~~~~~~vyAwp~A~~gVm~pEgav~I~fR~e~~~~~~~r~ 572 (758) T 3k8x_A 496 GSFIV---DALVDYKQPIIIYIPPTGELRGGSWVVVDPTINADQMEMYADVNARAGVLEPQGMVGIKFRREKLLDTMNRL 572 (758) T ss_dssp HHHHH---HHHHTCCSCEEEEECTTCEEETHHHHTTCGGGSTTTEEEEEETTCEEESSCHHHHHHHHSCHHHHHHHHHHH T ss_pred HHHHH---HHHHCCCCCEEEEEECCCEECCHHHHHCCCCCCCCCCEEEECCCCEEEECCHHHHHHHHHCCCCCCCCHHHH T ss_conf 99999---999758998799994774451212542376547765537786720388178999989781641100352216 Q ss_pred ----CCCCCC-----------------------------------C---H-HHHHHHHCCCCCEEECHHHHHHHHHHHHH Q ss_conf ----778872-----------------------------------0---2-15999968983537358999999999999 Q gi|254780820|r 241 ----EKLPDG-----------------------------------F---Q-RSEYLVEHGMIDRIVHRHDIPEVVSSLCK 277 (284) Q Consensus 241 ----~~lp~~-----------------------------------f---q-tae~l~~~G~iD~iv~r~~l~~~i~~ll~ 277 (284) .+|-+. | | |+....++|.||.||+.++.|.++...|+ T Consensus 573 d~~~~el~~~l~~~~~aae~~~~~~~~~~~re~~l~~~y~~va~~fa~lhd~~~rm~a~G~I~~vi~~~~tR~~~~~~l~ 652 (758) T 3k8x_A 573 DDKYRELRSQLSNKSLAPEVHQQISKQLADRERELLPIYGQISLQFADLHDRSSRMVAKGVISKELEWTEARRFFFWRLR 652 (758) T ss_dssp CSCCCCC----------------------------HHHHHHHHHHHHHTTSBHHHHHHHTCSSEEECGGGHHHHHHHHHH T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHH T ss_conf 99999999986394326566888999999999987788999999999830858778752837733287887999999999 Q ss_pred H Q ss_conf 9 Q gi|254780820|r 278 I 278 (284) Q Consensus 278 i 278 (284) - T Consensus 653 r 653 (758) T 3k8x_A 653 R 653 (758) T ss_dssp H T ss_pred H T ss_conf 9 No 25 >3isa_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2, protein structure initiative; 1.76A {Bordetella parapertussis} Probab=98.11 E-value=0.00033 Score=50.67 Aligned_cols=158 Identities=11% Similarity=0.147 Sum_probs=105.4 Q ss_pred EEEEEECHHHCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECC-----CCCCCCCCH-----HHHHHHHHHHHHHHHHHHC Q ss_conf 999983303185357789999999999998628968999768-----887765212-----4677778899999999862 Q gi|254780820|r 123 VAVVHEFSFIGGSIGIAAGEAIVKSCERAIAEKCPLVMFTAS-----GGARMQEGI-----LSLMQLPRTTIAINMLKDA 192 (284) Q Consensus 123 vv~~~df~F~GGSmG~~~geki~~a~e~A~~~~~PlI~~~~S-----GGaRMqEG~-----~sL~qMakt~~a~~~l~~~ 192 (284) ...-+|--=-.-+++...-+.+..+++.+.+..+-+|++..+ .|+.+.|-. .....+.+....+.++.+. T Consensus 18 ~tiTlnrP~~~Nal~~~m~~el~~al~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i~~~ 97 (254) T 3isa_A 18 WTFTLSRPEKRNALSAELVEALIDGVDAAHREQVPLLVFAGAGRNFSAGFDFTDYETQSEGDLLLRMVRIEMLLQRVAGS 97 (254) T ss_dssp EEEEECCGGGTTCBCHHHHHHHHHHHHHHHHTTCSEEEEEESTTCSCCCBCCTTCTTSCHHHHHHHHHHHHHHHHHHHTC T ss_pred EEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHC T ss_conf 99995575657899999999999999997579954999978899711698704310110012456678999999999858 Q ss_pred CCCEEEEECCCCCCEEEEEECCCCCEEEEECCCEEECCCHHH--------HHHHHCCC------C-CCCCHHHHHHHHCC Q ss_conf 998899856764201111201468525553142110232788--------78763677------8-87202159999689 Q gi|254780820|r 193 GLPYIVVLTNPTTGGVTASYAMLGDIHLAEPGAEIGFAGRRV--------IEQTVREK------L-PDGFQRSEYLVEHG 257 (284) Q Consensus 193 ~lP~I~vl~~pt~GGv~AS~a~lgDiiiaep~a~igFaG~rV--------i~~t~~~~------l-p~~fqtae~l~~~G 257 (284) ..|+|+.+.+++.||= +.++...|+.|+.+++.+++..-++ ..+.+|.. + .+- =+++..++.| T Consensus 98 ~kPvIaav~G~a~GgG-~~lal~~D~ria~~~a~f~~pe~~~Gl~pg~~~l~r~iG~~~A~~llltg~~-~~a~eA~~~G 175 (254) T 3isa_A 98 PSLTLALAHGRNFGAG-VDLFAACKWRYCTPEAGFRMPGLKFGLVLGTRRFRDIVGADQALSILGSARA-FDADEARRIG 175 (254) T ss_dssp SSEEEEEECSEEETHH-HHHHHHSSEEEECTTCEEECCGGGGTCCCSHHHHHHHHCHHHHHHHHTTTCE-EEHHHHHHTT T ss_pred CCCEEEECCCCEEECC-CCCCCCCCEEEECCCCCCCCCCEEEEECCCCCCCHHHCCHHHHHHHHHHCCC-CCHHHHHHCC T ss_conf 9989996797187647-6235557768976543555751025005776543444169999999860677-6778999769 Q ss_pred CCCEEECHHHHHHHHHHHHHHHHCC Q ss_conf 8353735899999999999997237 Q gi|254780820|r 258 MIDRIVHRHDIPEVVSSLCKILTKS 282 (284) Q Consensus 258 ~iD~iv~r~~l~~~i~~ll~il~~~ 282 (284) +||.||+..++.+.+..+.+-+.++ T Consensus 176 Lv~~vv~~~~l~~~~~~~a~~l~~~ 200 (254) T 3isa_A 176 FVRDCAAQAQWPALIDAAAEAATAL 200 (254) T ss_dssp SSSEECCGGGHHHHHHHHHHHHTTS T ss_pred CHHEECCHHHHHHHHHHHHHHHHCC T ss_conf 7315628879999999999999839 No 26 >1ef8_A Methylmalonyl COA decarboxylase; lyase; 1.85A {Escherichia coli} SCOP: c.14.1.3 PDB: 1ef9_A* Probab=98.04 E-value=0.00028 Score=51.22 Aligned_cols=161 Identities=9% Similarity=0.161 Sum_probs=100.3 Q ss_pred EEEEEEECHHHCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCC-------CCCC---CHHHHHHHH-HHHHHHHHHH Q ss_conf 9999983303185357789999999999998628968999768887-------7652---124677778-8999999998 Q gi|254780820|r 122 LVAVVHEFSFIGGSIGIAAGEAIVKSCERAIAEKCPLVMFTASGGA-------RMQE---GILSLMQLP-RTTIAINMLK 190 (284) Q Consensus 122 vvv~~~df~F~GGSmG~~~geki~~a~e~A~~~~~PlI~~~~SGGa-------RMqE---G~~sL~qMa-kt~~a~~~l~ 190 (284) |++..+|--=-.-+++...-..+..+++.+.+...-+|++..++|- .+.| +...-..+. .....+..+. T Consensus 14 i~~Itlnrp~~~Nal~~~~~~~L~~al~~~~~~~~~~vVl~g~~~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~i~ 93 (261) T 1ef8_A 14 VAVIEFNYGRKLNALSKVFIDDLMQALSDLNRPEIRCIILRAPSGSKVFSAGHDIHELPSGGRDPLSYDDPLRQITRMIQ 93 (261) T ss_dssp EEEEEECCGGGTTCCCHHHHHHHHHHHHHTCSTTCCEEEEECCTTCSEEECCSCSTTC-----CTTCTTSHHHHHHHHHH T ss_pred EEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHH T ss_conf 99999738777799999999999999999737998799997148997476687711343467430246699999999999 Q ss_pred HCCCCEEEEECCCCCCEEEEEECCCCCEEEEECCCEEECCCHHH-------HHHHHCCCCC----------CCCHHHHHH Q ss_conf 62998899856764201111201468525553142110232788-------7876367788----------720215999 Q gi|254780820|r 191 DAGLPYIVVLTNPTTGGVTASYAMLGDIHLAEPGAEIGFAGRRV-------IEQTVREKLP----------DGFQRSEYL 253 (284) Q Consensus 191 ~~~lP~I~vl~~pt~GGv~AS~a~lgDiiiaep~a~igFaG~rV-------i~~t~~~~lp----------~~fqtae~l 253 (284) +...|+|+.+.++|.||- ...++..|++|+.++|.+++.-.++ .-..+...++ -.--+|+-. T Consensus 94 ~~~kPvIaav~G~a~GgG-~~lala~D~ria~~~a~f~~pe~~~G~~~~~g~~~~l~~~~G~~~a~~~~l~g~~~~a~eA 172 (261) T 1ef8_A 94 KFPKPIISMVEGSVWGGA-FEMIMSSDLIIAASTSTFSMTPVNLGVPYNLVGIHNLTRDAGFHIVKELIFTASPITAQRA 172 (261) T ss_dssp HCSSCEEEEECSEEETHH-HHHHHHSSEEEEETTCEEECCHHHHTCCCCHHHHHTTSSSSCHHHHHHHHHHCCCEEHHHH T ss_pred HCCCCEEEEECCEEEEEE-EHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHCCCEECHHHH T ss_conf 779988999774886401-0244534440000001235840001235564203244677173678999980984459999 Q ss_pred HHCCCCCEEECHHHHHHHHHHHHHHHHCCC Q ss_conf 968983537358999999999999972378 Q gi|254780820|r 254 VEHGMIDRIVHRHDIPEVVSSLCKILTKSV 283 (284) Q Consensus 254 ~~~G~iD~iv~r~~l~~~i~~ll~il~~~~ 283 (284) ++.|++|.|++..++.+....+.+-+.+++ T Consensus 173 ~~~Glv~~v~~~~~~~~~a~~~a~~l~~~~ 202 (261) T 1ef8_A 173 LAVGILNHVVEVEELEDFTLQMAHHISEKA 202 (261) T ss_dssp HHTTSCSEEECHHHHHHHHHHHHHHHTTSC T ss_pred HHCCCCCEECCCHHHHHHHHHHHHHHHCCC T ss_conf 975992275680457999999999998379 No 27 >2vx2_A Enoyl-COA hydratase domain-containing protein 3; isomerase, alternative splicing, fatty acid metabolism, enoyl coenzyme A hydratase; 2.3A {Homo sapiens} Probab=98.03 E-value=0.00038 Score=50.22 Aligned_cols=161 Identities=11% Similarity=0.177 Sum_probs=104.7 Q ss_pred EEEEECEEEEEEEEECHHHCCCCCHHHHHHHHHHHHHHHHH-CCCEEEEECCCC-----CCCCCCHH-----HHH-HHHH Q ss_conf 87870414999998330318535778999999999999862-896899976888-----77652124-----677-7788 Q gi|254780820|r 114 VGNVRDFKLVAVVHEFSFIGGSIGIAAGEAIVKSCERAIAE-KCPLVMFTASGG-----ARMQEGIL-----SLM-QLPR 181 (284) Q Consensus 114 ~G~I~G~~vvv~~~df~F~GGSmG~~~geki~~a~e~A~~~-~~PlI~~~~SGG-----aRMqEG~~-----sL~-qMak 181 (284) .-++|| |+...+|--=-.-+++...-+-+..+++.+.++ .+-+|++..+|. +.+.+-.. ... .+.. T Consensus 37 ~~~~DG--Va~ItlnrP~~~Nals~~~~~~l~~~l~~~~~d~~v~vvvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 114 (287) T 2vx2_A 37 ARQLDG--IRNIVLSNPKKRNTLSLAMLKSLQSDILHDADSNDLKVIIISAEGPVFSSGHDLKELTEEQGRDYHAEVFQT 114 (287) T ss_dssp EEEETT--EEEEEECCGGGTTCCCHHHHHHHHHHHHTTTTCTTCCEEEEEESSSEEECCSCCC-CCGGGCHHHHHHHHHH T ss_pred EEEECC--EEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHCCCHHHHHHHHHHH T ss_conf 773088--899997488877999999999999999998508996699997889986477541222000012466777767 Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCCEEEEECCCEEECCCHHH-------------------HHHH--HC Q ss_conf 99999999862998899856764201111201468525553142110232788-------------------7876--36 Q gi|254780820|r 182 TTIAINMLKDAGLPYIVVLTNPTTGGVTASYAMLGDIHLAEPGAEIGFAGRRV-------------------IEQT--VR 240 (284) Q Consensus 182 t~~a~~~l~~~~lP~I~vl~~pt~GGv~AS~a~lgDiiiaep~a~igFaG~rV-------------------i~~t--~~ 240 (284) ....+.++.....|+|+.+.++|.||- ..+++..|+.|+.+++.+++..-++ ..+- ++ T Consensus 115 ~~~~~~~l~~~~kPvIAav~G~a~GgG-~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~l~r~lg~~~a~~llltg 193 (287) T 2vx2_A 115 CSKVMMHIRNHPVPVIAMVNGLATAAG-CQLVASCDIAVASDKSSFATPGVNVGLFCSTPGVALARAVPRKVALEMLFTG 193 (287) T ss_dssp HHHHHHHHHTCSSCEEEEECSEEETHH-HHHHHHSSEEEEETTCEEECCGGGGTCCCHHHHHHHHTTSCHHHHHHHHHHC T ss_pred HHHHHHHHHCCCCCEEEEECCEEEHHH-HHHHHHCCCCEECCCCEEECHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCC T ss_conf 999999997289877999688661667-8887605645377886898711152707872278899999999999999839 Q ss_pred CCCCCCCHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHCC Q ss_conf 778872021599996898353735899999999999997237 Q gi|254780820|r 241 EKLPDGFQRSEYLVEHGMIDRIVHRHDIPEVVSSLCKILTKS 282 (284) Q Consensus 241 ~~lp~~fqtae~l~~~G~iD~iv~r~~l~~~i~~ll~il~~~ 282 (284) +.+ +|+..++.|+||.||+..++.+....+..-+.++ T Consensus 194 ~~~-----~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~l~~~ 230 (287) T 2vx2_A 194 EPI-----SAQEALLHGLLSKVVPEAELQEETMRIARKIASL 230 (287) T ss_dssp CCE-----EHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHTS T ss_pred CCC-----CHHHHHHCCCEEEECCHHHHHHHHHHHHHHHHHC T ss_conf 947-----8899987877026178677567899999999835 No 28 >2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein; 2.24A {Pectobacterium carotovorum} SCOP: c.14.1.3 PDB: 2a81_A* Probab=97.99 E-value=0.0015 Score=45.90 Aligned_cols=162 Identities=10% Similarity=0.075 Sum_probs=99.7 Q ss_pred EEEEEEEECHHHCCCCCHHHHHHHHHHHHHHHHHC-CCEEEEECCCC------CCCCC---C--HHHHHHHH-HHHHHHH Q ss_conf 49999983303185357789999999999998628-96899976888------77652---1--24677778-8999999 Q gi|254780820|r 121 KLVAVVHEFSFIGGSIGIAAGEAIVKSCERAIAEK-CPLVMFTASGG------ARMQE---G--ILSLMQLP-RTTIAIN 187 (284) Q Consensus 121 ~vvv~~~df~F~GGSmG~~~geki~~a~e~A~~~~-~PlI~~~~SGG------aRMqE---G--~~sL~qMa-kt~~a~~ 187 (284) .|.+..+|--=-.-++....-..+..+++.+.++. +-+|++..+|+ +.+.+ . .-...++. .....+. T Consensus 9 ~I~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~dl~~~~~~~~~~~~~~~~~~~~~~~~ 88 (250) T 2a7k_A 9 EVRVITLDHPNKHNPFSRTLETSVKDALARANADDSVRAVVVYGGAERSFSAGGDFNEVKQLSRSEDIEEWIDRVIDLYQ 88 (250) T ss_dssp TEEEEEECCSSTTCBCCHHHHHHHHHHHHHHHHCTTCCEEEEECCTTSCSBCBSCHHHHHTC-CHHHHHHHHHHHHHHHH T ss_pred CEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHH T ss_conf 89999974888679999999999999999996399964999982899966588763333322330568999988999999 Q ss_pred HHHHCCCCEEEEECCCCCCEEEEEECCCCCEEEEECCCEEECCCHHH----------HHHHHCCC------CCCCCHHHH Q ss_conf 99862998899856764201111201468525553142110232788----------78763677------887202159 Q gi|254780820|r 188 MLKDAGLPYIVVLTNPTTGGVTASYAMLGDIHLAEPGAEIGFAGRRV----------IEQTVREK------LPDGFQRSE 251 (284) Q Consensus 188 ~l~~~~lP~I~vl~~pt~GGv~AS~a~lgDiiiaep~a~igFaG~rV----------i~~t~~~~------lp~~fqtae 251 (284) ++.....|+|+.+.++|.||- ..+++..|+.|+.+++.+++.--++ ....+|.. +--.--+|+ T Consensus 89 ~i~~~~kpvIaai~G~a~GgG-~~lal~~D~ria~~~a~f~~pe~~~Gl~p~~g~~~l~~~iG~~~a~~lll~g~~~~a~ 167 (250) T 2a7k_A 89 AVLNVNKPTIAAVDGYAIGMG-FQFALMFDQRLMASTANFVMPELKHGIGCSVGAAILGFTHGFSTMQEIIYQCQSLDAP 167 (250) T ss_dssp HHHTCCSCEEEEECSEEETHH-HHHHTTSSEEEEETTCEEECCGGGGTCCCHHHHHHHHHHHCHHHHHHHHHHCCCBCHH T ss_pred HHHHCCCCEEEEECCEEECCC-CHHHHCCCCCCCCCCCEEEEECCCEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCHH T ss_conf 999679874886676274264-4323224545234142776403555255761687898873399999999839900689 Q ss_pred HHHHCCCCCEEECHHHHHHHHHHHHHHHHCCC Q ss_conf 99968983537358999999999999972378 Q gi|254780820|r 252 YLVEHGMIDRIVHRHDIPEVVSSLCKILTKSV 283 (284) Q Consensus 252 ~l~~~G~iD~iv~r~~l~~~i~~ll~il~~~~ 283 (284) ..++.|+||.|++..++.+....+..-+.+++ T Consensus 168 eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~ 199 (250) T 2a7k_A 168 RCVDYRLVNQVVESSALLDAAITQAHVMASYP 199 (250) T ss_dssp HHHHHTCCSEEECHHHHHHHHHHHHHHHHTSC T ss_pred HHHHCCCCCEEECHHHHHHHHHHHHHHHHCCC T ss_conf 99980997777684799999999999998589 No 29 >3lke_A Enoyl-COA hydratase; nysgrc, target 11251J, structural genomics, PSI-2, protein structure initiative; 1.70A {Bacillus halodurans} Probab=97.98 E-value=0.0013 Score=46.19 Aligned_cols=156 Identities=12% Similarity=0.164 Sum_probs=97.2 Q ss_pred EEEECHHHCCCCCHHHHHHHHHHHHHHHHH-CCCEEEEECCC------CCCCCCCH--------HHHHHHH-HHHHHHHH Q ss_conf 998330318535778999999999999862-89689997688------87765212--------4677778-89999999 Q gi|254780820|r 125 VVHEFSFIGGSIGIAAGEAIVKSCERAIAE-KCPLVMFTASG------GARMQEGI--------LSLMQLP-RTTIAINM 188 (284) Q Consensus 125 ~~~df~F~GGSmG~~~geki~~a~e~A~~~-~~PlI~~~~SG------GaRMqEG~--------~sL~qMa-kt~~a~~~ 188 (284) ..+|--=-.-++....-+.+..+++.+.++ .+-+|++..+| |+.+.|-. ..+..+. .....+.+ T Consensus 17 itlnrP~~~Nals~~~~~el~~~l~~~~~d~~v~~vVl~g~g~~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (263) T 3lke_A 17 ITLDYPEKKNGLDAELGTSLLEAIRAGNNETSIHSIILQSKHRAYFSSGPRLEDLLICASDQSDVRLREVLHVLNHCVLE 96 (263) T ss_dssp EEECCGGGTTBCCHHHHHHHHHHHHHHHHCSSCCEEEEEESCTTEEECBSCHHHHHHHHHCSSSHHHHHHHHHHHHHHHH T ss_pred EEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHH T ss_conf 99758886689899999999999999850999579999638986416886210232001111157788889999999999 Q ss_pred HHHCCCCEEEEECCCCCCEEEEEECCCCCEEEEECCCEEECCCHH-----------HHHHHHCCCC-------CCCCHHH Q ss_conf 986299889985676420111120146852555314211023278-----------8787636778-------8720215 Q gi|254780820|r 189 LKDAGLPYIVVLTNPTTGGVTASYAMLGDIHLAEPGAEIGFAGRR-----------VIEQTVREKL-------PDGFQRS 250 (284) Q Consensus 189 l~~~~lP~I~vl~~pt~GGv~AS~a~lgDiiiaep~a~igFaG~r-----------Vi~~t~~~~l-------p~~fqta 250 (284) +.....|+|+.+.++|.||- ..++..+|+.|+.+.+.+++.-.+ ...+.+|... .+. -+| T Consensus 97 l~~~pkPvIaav~G~a~GgG-~~lal~~D~ria~~~a~f~~pe~~~G~~~~~g~~~~l~r~~G~~~a~~l~l~g~~-~~a 174 (263) T 3lke_A 97 IFTSPKVTVALINGYAYGGG-FNMMLACDRRIALRRAKFLENFHKMGISPDLGASYFLPRIIGYEQTMNLLLEGKL-FTS 174 (263) T ss_dssp HHTCSSEEEEEECSEEETHH-HHGGGGSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHCHHHHHHHHHHCCC-EEH T ss_pred HHHCCCCEEEEECCCCCCCC-HHHHHHCCEEEECCCCEECCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCC-CCC T ss_conf 98399989999768356065-4887402010224666142631146537782078999999768999999965997-433 Q ss_pred HHHHHCCCCCEEEC-HHHHHHHHHHHHHHHHCC Q ss_conf 99996898353735-899999999999997237 Q gi|254780820|r 251 EYLVEHGMIDRIVH-RHDIPEVVSSLCKILTKS 282 (284) Q Consensus 251 e~l~~~G~iD~iv~-r~~l~~~i~~ll~il~~~ 282 (284) +..++.|+||.|++ ++++.+.+..++.-+.++ T Consensus 175 ~eA~~~Glv~~vv~~~~~l~~~~~~~a~~i~~~ 207 (263) T 3lke_A 175 EEALRLGLIQEICENKQELQERVKNYLKAVSEG 207 (263) T ss_dssp HHHHHHTSSSEEESSHHHHHHHHHHHHHHHHTS T ss_pred HHHHHCCCCEEEECCHHHHHHHHHHHHHHHHCC T ss_conf 148877972487399899999999999999809 No 30 >3myb_A Enoyl-COA hydratase; ssgcid, struct genomics, seattle structural genomics center for infectious lyase; 1.55A {Mycobacterium smegmatis} Probab=97.96 E-value=0.00091 Score=47.43 Aligned_cols=160 Identities=14% Similarity=0.164 Sum_probs=100.9 Q ss_pred EEEEEEECHHHCCCCCHHHHHHHHHHHHHHHHHC-CCEEEEECCCC-----CCCCC-----CHHHHHHHH-HHHHHHHHH Q ss_conf 9999983303185357789999999999998628-96899976888-----77652-----124677778-899999999 Q gi|254780820|r 122 LVAVVHEFSFIGGSIGIAAGEAIVKSCERAIAEK-CPLVMFTASGG-----ARMQE-----GILSLMQLP-RTTIAINML 189 (284) Q Consensus 122 vvv~~~df~F~GGSmG~~~geki~~a~e~A~~~~-~PlI~~~~SGG-----aRMqE-----G~~sL~qMa-kt~~a~~~l 189 (284) |+...+|--=-.-++....-+.+..+++.+.++. +-+|++..+|+ +.+.| +--...++. .....+.++ T Consensus 36 Va~ItlnrP~~~Nals~~~~~eL~~al~~~~~d~~vrvvvl~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l 115 (286) T 3myb_A 36 VVTLTLNRPQAFNALSEAMLAALGEAFGTLAEDESVRAVVLAASGKAFCAGHDLKEMRAEPSREYYEKLFARCTDVMLAI 115 (286) T ss_dssp EEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEECSSCSBCCBCHHHHHSSCCHHHHHHHHHHHHHHHHHH T ss_pred EEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHH T ss_conf 89999758887789899999999999999974899569999569997137878899834676778888887778999999 Q ss_pred HHCCCCEEEEECCCCCCEEEEEECCCCCEEEEECCCEEECCC------HHHHHHHHCCCCCC----------CCHHHHHH Q ss_conf 862998899856764201111201468525553142110232------78878763677887----------20215999 Q gi|254780820|r 190 KDAGLPYIVVLTNPTTGGVTASYAMLGDIHLAEPGAEIGFAG------RRVIEQTVREKLPD----------GFQRSEYL 253 (284) Q Consensus 190 ~~~~lP~I~vl~~pt~GGv~AS~a~lgDiiiaep~a~igFaG------~rVi~~t~~~~lp~----------~fqtae~l 253 (284) .....|+|+.+.++|.||-. .+++..|+.|+.+++.+++.. |...-...-.-++. .--+++.. T Consensus 116 ~~~~kPvIaav~G~a~GgG~-~lalacD~ria~~~a~f~~pe~~lGl~p~~g~~~l~~~vG~~~a~~llltg~~~~a~eA 194 (286) T 3myb_A 116 QRLPAPVIARVHGIATAAGC-QLVAMCDLAVATRDARFAVSGINVGLFCSTPGVALSRNVGRKAAFEMLVTGEFVSADDA 194 (286) T ss_dssp HHSSSCEEEEECSCEETHHH-HHHHHSSEEEEETTCEEECGGGGGTCCCHHHHHHHTTTSCHHHHHHHHHHCCCEEHHHH T ss_pred HHCCCCEEEEECCEEEHHHH-HHHHHCCEEEECCCCEEECCCEEECCCCCCCCCCHHHHHCHHHHHHHHHCCCEECHHHH T ss_conf 84999889998898752668-89871666897699889886301550678765414767189999999556975577899 Q ss_pred HHCCCCCEEECHHHHHHHHHHHHHHHHCC Q ss_conf 96898353735899999999999997237 Q gi|254780820|r 254 VEHGMIDRIVHRHDIPEVVSSLCKILTKS 282 (284) Q Consensus 254 ~~~G~iD~iv~r~~l~~~i~~ll~il~~~ 282 (284) ++-|+||.|++..++.+....++.-+.++ T Consensus 195 ~~~Glv~~vv~~~~~~~~a~~~a~~l~~~ 223 (286) T 3myb_A 195 KGLGLVNRVVAPKALDDEIEAMVSKIVAK 223 (286) T ss_dssp HHHTSCSEEECGGGHHHHHHHHHHHHHHS T ss_pred HHCCCCEECCCHHHHHHHHHHHHHHHHCC T ss_conf 87799745178678999999999999738 No 31 >3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium smegmatis} PDB: 3njb_A Probab=97.94 E-value=0.00076 Score=48.04 Aligned_cols=159 Identities=17% Similarity=0.188 Sum_probs=105.7 Q ss_pred EECEEEEEEEEECHHHCCCCCHHHHHHHHHHHHHHHH-HCCCEEEEECCC-----CCCCCCC---HH------------- Q ss_conf 7041499999833031853577899999999999986-289689997688-----8776521---24------------- Q gi|254780820|r 117 VRDFKLVAVVHEFSFIGGSIGIAAGEAIVKSCERAIA-EKCPLVMFTASG-----GARMQEG---IL------------- 174 (284) Q Consensus 117 I~G~~vvv~~~df~F~GGSmG~~~geki~~a~e~A~~-~~~PlI~~~~SG-----GaRMqEG---~~------------- 174 (284) |.|. |....+|--=-.-+|+...-+.+..+++.+.+ ..+-+|++..+| |+.+.+- .. T Consensus 41 ~~~~-Va~ItLnrP~~~Nals~~m~~el~~~l~~~~~d~~vrviVltG~G~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~ 119 (333) T 3njd_A 41 VTDR-VARITFNRPEKGNAIVADTPLELSALVERADLDPDVHVILVSGRGEGFCAGFDLSAYAEGSSSAGGGSPYEGTVL 119 (333) T ss_dssp EETT-EEEEEECCGGGTTCBCTHHHHHHHHHHHHHHHCTTCCEEEEEESTTSSBCCBC---------------CCTTSTT T ss_pred EECC-EEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHCCCCCCCCCCCHHHHH T ss_conf 9999-999997675647899999999999999999729994599997899985588876887612323345542000111 Q ss_pred ------------------HHHH-HHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCCEEEEECCCEEECCCHHH- Q ss_conf ------------------6777-78899999999862998899856764201111201468525553142110232788- Q gi|254780820|r 175 ------------------SLMQ-LPRTTIAINMLKDAGLPYIVVLTNPTTGGVTASYAMLGDIHLAEPGAEIGFAGRRV- 234 (284) Q Consensus 175 ------------------sL~q-Makt~~a~~~l~~~~lP~I~vl~~pt~GGv~AS~a~lgDiiiaep~a~igFaG~rV- 234 (284) ...+ +.+....+..+.....|+|+.+-++|.||= ..+++..|+.||.+++.+++.--++ T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG-~~lal~~D~ria~~~a~f~~pe~~~G 198 (333) T 3njd_A 120 SGKTQALNHLPDEPWDPMVDYQMMSRFVRGFASLMHCDKPTVVKIHGYCVAGG-TDIALHADQVIAAADAKIGYPPMRVW 198 (333) T ss_dssp CHHHHHHTTCSSSCCCHHHHHHHHHHHHHHHTHHHHSSSCEEEEECSEEETHH-HHHHTTSSEEEECTTCEEECGGGGTT T ss_pred HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCEEEECC-CEECCCCCEEEECCCCEEECCCEEEC T ss_conf 01455420354223452678999999999999999589988999788786243-31103577799879988988704412 Q ss_pred ----------------HHHH--HCCCCCCCCHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHCC Q ss_conf ----------------7876--36778872021599996898353735899999999999997237 Q gi|254780820|r 235 ----------------IEQT--VREKLPDGFQRSEYLVEHGMIDRIVHRHDIPEVVSSLCKILTKS 282 (284) Q Consensus 235 ----------------i~~t--~~~~lp~~fqtae~l~~~G~iD~iv~r~~l~~~i~~ll~il~~~ 282 (284) .... +++.+ +|+..++.|+||.||+..++.+....+.+-+.++ T Consensus 199 ~~p~~~~l~r~iG~~~A~~llltg~~i-----~A~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~ 259 (333) T 3njd_A 199 GVPAAGLWAHRLGDQRAKRLLFTGDCI-----TGAQAAEWGLAVEAPDPADLDARTERLVERIAAM 259 (333) T ss_dssp CCCTTCCHHHHHCHHHHHHHHTTCCEE-----EHHHHHHTTSSSBCCCGGGHHHHHHHHHHHHHTS T ss_pred CCCCCCHHHHHHCHHHHHHHHHHCCCC-----HHHHHHHCCCEEEECCHHHHHHHHHHHHHHHHCC T ss_conf 677520565651579899998608830-----2999998799019628778999999999999868 No 32 >3ome_A Enoyl-COA hydratase; ssgcid, structural genomics, structural genomics center for infectious disease, lyase; 2.05A {Mycobacterium smegmatis str} Probab=97.89 E-value=0.00084 Score=47.69 Aligned_cols=160 Identities=14% Similarity=0.130 Sum_probs=103.5 Q ss_pred EECEEEEEEEEECHHHCCCCCHHHHHHHHHHHHHHHH-HCCCEEEEECCC-----CCCCCCCHH---------HHHHHH- Q ss_conf 7041499999833031853577899999999999986-289689997688-----877652124---------677778- Q gi|254780820|r 117 VRDFKLVAVVHEFSFIGGSIGIAAGEAIVKSCERAIA-EKCPLVMFTASG-----GARMQEGIL---------SLMQLP- 180 (284) Q Consensus 117 I~G~~vvv~~~df~F~GGSmG~~~geki~~a~e~A~~-~~~PlI~~~~SG-----GaRMqEG~~---------sL~qMa- 180 (284) +++. |++..+|--=-.-+|....-+-+..+++.+.+ ..+.+|++...| |+-..++.. .+..+. T Consensus 29 ~~~~-Va~ItlnrP~~~Nals~~~~~eL~~al~~~~~d~~v~~vVltg~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~ 107 (282) T 3ome_A 29 VADS-IATITLNRPEAANAQNPELLDELDAAWTRAAEDNEVKVIILRANGKHFSAGHDLRGGGEVPEKISLEFIIQHEAR 107 (282) T ss_dssp EETT-EEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCBCCC-------CCCHHHHHHHHHH T ss_pred EECC-EEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCEECCCHHHHCCCCCCCCCHHHHHHHHHH T ss_conf 9999-999997584646899999999999999999868891799982687740135224312444433202455788999 Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCCEEEEECCCEEECCCHHH----------HHH----------HHC Q ss_conf 899999999862998899856764201111201468525553142110232788----------787----------636 Q gi|254780820|r 181 RTTIAINMLKDAGLPYIVVLTNPTTGGVTASYAMLGDIHLAEPGAEIGFAGRRV----------IEQ----------TVR 240 (284) Q Consensus 181 kt~~a~~~l~~~~lP~I~vl~~pt~GGv~AS~a~lgDiiiaep~a~igFaG~rV----------i~~----------t~~ 240 (284) .....+.++.....|+|+.+.++|.||= ..+++.+|+.|+.+++.+++.-.++ ... .+| T Consensus 108 ~~~~~~~~l~~~~kPvIaav~G~a~GgG-~~lal~~D~ria~~~a~~~~~e~~~g~~~~~~~~l~~~~g~~~A~~llltG 186 (282) T 3ome_A 108 RYLDYTLRWRNVPKPSIAAVQGRCISGG-LLLCWPCDLILASDDALFSDPVALMGIGGVEYHGHTWELGPRKAKEILFTG 186 (282) T ss_dssp HTTHHHHHHHHCSSCEEEEECSEEEGGG-HHHHTTSSEEEEETTCEEECCGGGGTCSSCSSCCHHHHHCHHHHHHHHHHC T ss_pred HHHHHHHHHHHCCCCEEEEECCCCCHHH-HHHHHHCCHHHHCCCCEEECCCCEEECCCCHHHHHHHHHHHHHHHHHHHHC T ss_conf 9999999998199989999658313268-999760041553557676345235610643025788886178999999728 Q ss_pred CCCCCCCHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHCCC Q ss_conf 7788720215999968983537358999999999999972378 Q gi|254780820|r 241 EKLPDGFQRSEYLVEHGMIDRIVHRHDIPEVVSSLCKILTKSV 283 (284) Q Consensus 241 ~~lp~~fqtae~l~~~G~iD~iv~r~~l~~~i~~ll~il~~~~ 283 (284) +. -+|+..++.|+||.||+..++.+....++.-+.+++ T Consensus 187 ~~-----~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia~~~ 224 (282) T 3ome_A 187 RA-----LTAEEAERTGMVNRVVARDELDAQTRELAEQIATMP 224 (282) T ss_dssp CE-----EEHHHHHHHTSCSEEECGGGHHHHHHHHHHHHTTSC T ss_pred CC-----CCHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHCCC T ss_conf 85-----679998654996674176899999999999998679 No 33 >3he2_A Enoyl-COA hydratase ECHA6; fatty acid metabolism, lipid metabolism, lyase, structural genomics; HET: PGE; 2.30A {Mycobacterium tuberculosis} Probab=97.89 E-value=0.00069 Score=48.32 Aligned_cols=148 Identities=16% Similarity=0.221 Sum_probs=95.1 Q ss_pred EEEEEEECHHHCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCC-----CCCCCHHHHHHHHHHHHHHHHHHHCCCCE Q ss_conf 9999983303185357789999999999998628968999768887-----76521246777788999999998629988 Q gi|254780820|r 122 LVAVVHEFSFIGGSIGIAAGEAIVKSCERAIAEKCPLVMFTASGGA-----RMQEGILSLMQLPRTTIAINMLKDAGLPY 196 (284) Q Consensus 122 vvv~~~df~F~GGSmG~~~geki~~a~e~A~~~~~PlI~~~~SGGa-----RMqEG~~sL~qMakt~~a~~~l~~~~lP~ 196 (284) |...-+|--=-.-++....-+.+..+++.+.+..+-+|++..+|+. .+.+-...............++.....|+ T Consensus 31 V~~ItlnrP~~~Nal~~~m~~eL~~~l~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~i~~~~kpv 110 (264) T 3he2_A 31 VLTIELQRPERRNALNSQLVEELTQAIRKAGDGSARAIVLTGQGTAFCAGADLSGDAFAADYPDRLIELHKAMDASPMPV 110 (264) T ss_dssp EEEEEECCGGGTTCBCHHHHHHHHHHHHCC---CCSEEEEEESSSCSBCCBCCTTCTTGGGHHHHHHHHHHHHHHCSSCE T ss_pred EEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHCCCCE T ss_conf 99999748464689899999999999997018995599996899851345454344430103589999999998589989 Q ss_pred EEEECCCCCCEEEEEECCCCCEEEEECCCEEECCCHHH-----------HHHH-----------HCCCCCCCCHHHHHHH Q ss_conf 99856764201111201468525553142110232788-----------7876-----------3677887202159999 Q gi|254780820|r 197 IVVLTNPTTGGVTASYAMLGDIHLAEPGAEIGFAGRRV-----------IEQT-----------VREKLPDGFQRSEYLV 254 (284) Q Consensus 197 I~vl~~pt~GGv~AS~a~lgDiiiaep~a~igFaG~rV-----------i~~t-----------~~~~lp~~fqtae~l~ 254 (284) |+.+.++|.||-. .++...|++|+.+++.+++...++ ..+. +++.+ +|+..+ T Consensus 111 Iaav~G~a~GgG~-~lal~~D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~iG~~~a~~lll~g~~~-----~a~eA~ 184 (264) T 3he2_A 111 VGAINGPAIGAGL-QLAMQCDLRVVAPDAFFQFPTSKYGLALDNWSIRRLSSLVGHGRARAMLLSAEKL-----TAEIAL 184 (264) T ss_dssp EEEECSCEETHHH-HHHHHSSEEEECTTCEEECTHHHHTCCCCHHHHHHHHHHHCHHHHHHHHHHCCCE-----EHHHHH T ss_pred EEEECCEEEHHHH-HHHHHCCEEEEECCCCCCCCCCCEEECCCHHHHHHHHHHCCCHHHHHHHHCCCCC-----CHHHHH T ss_conf 9997785644889-9998446665203444547401230067716888999981916778999838978-----889997 Q ss_pred HCCCCCEEECHHHHHHHHHHH Q ss_conf 689835373589999999999 Q gi|254780820|r 255 EHGMIDRIVHRHDIPEVVSSL 275 (284) Q Consensus 255 ~~G~iD~iv~r~~l~~~i~~l 275 (284) +.|+||.|++..+..+...+| T Consensus 185 ~~GLv~~v~~~~e~~~~a~~l 205 (264) T 3he2_A 185 HTGMANRIGTLADAQAWAAEI 205 (264) T ss_dssp HHTSCSEECCHHHHHHHHHHH T ss_pred HCCCCCEECCHHHHHHHHHHH T ss_conf 689463854679999999999 No 34 >2gtr_A CDY-like, chromodomain Y-like protein; structural genomics, structural genomics consortium, SGC, unknown function; 1.90A {Homo sapiens} PDB: 2fw2_A Probab=97.88 E-value=0.0013 Score=46.23 Aligned_cols=146 Identities=17% Similarity=0.145 Sum_probs=95.4 Q ss_pred HCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHH-H------------HHHHH-HHHHHHHHHHCCCCEE Q ss_conf 18535778999999999999862896899976888776521246-7------------77788-9999999986299889 Q gi|254780820|r 132 IGGSIGIAAGEAIVKSCERAIAEKCPLVMFTASGGARMQEGILS-L------------MQLPR-TTIAINMLKDAGLPYI 197 (284) Q Consensus 132 ~GGSmG~~~geki~~a~e~A~~~~~PlI~~~~SGGaRMqEG~~s-L------------~qMak-t~~a~~~l~~~~lP~I 197 (284) -.-++....-+-+..+++.+.....-+|++..+|..=--.+-+. + ..+.+ ....+..+.....|+| T Consensus 26 ~~Nal~~~~~~el~~al~~~~~d~~~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvI 105 (261) T 2gtr_A 26 ENNSLNPEVMREVQSALSTAAADDSKLVLLSAVGSVFCCGLDFIYFIRRLTDDRKRESTKMAEAIRNFVNTFIQFKKPII 105 (261) T ss_dssp STTEECHHHHHHHHHHHHHHHHSSCSCEEEEESSSCSBCEECHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCEE T ss_pred HCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEE T ss_conf 03588999999999999998629976999978998646688873542211233202478999999887678750999899 Q ss_pred EEECCCCCCEEEEEECCCCCEEEEECCCEEECCCHH-----------HHHHH-----------HCCCCCCCCHHHHHHHH Q ss_conf 985676420111120146852555314211023278-----------87876-----------36778872021599996 Q gi|254780820|r 198 VVLTNPTTGGVTASYAMLGDIHLAEPGAEIGFAGRR-----------VIEQT-----------VREKLPDGFQRSEYLVE 255 (284) Q Consensus 198 ~vl~~pt~GGv~AS~a~lgDiiiaep~a~igFaG~r-----------Vi~~t-----------~~~~lp~~fqtae~l~~ 255 (284) +.+.++|.||= +.++...|+.|+.+++.+++.-.+ ...+. +++.+ +|+..++ T Consensus 106 aav~G~a~GgG-~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~G~~~a~~l~l~g~~~-----~a~eA~~ 179 (261) T 2gtr_A 106 VAVNGPAIGLG-ASILPLCDVVWANEKAWFQTPYTTFGQSPDGCSTVMFPKIMGGASANEMLLSGRKL-----TAQEACG 179 (261) T ss_dssp EEECSCEETHH-HHTGGGSSEEEEETTCEEECCTTTTTCCCCTTHHHHHHHHHCHHHHHHHHHHCCCE-----EHHHHHH T ss_pred EEECCEEEECC-CHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCC-----CHHHHHH T ss_conf 99878146621-17530001412335456553210147778843477899981952224542356767-----7889976 Q ss_pred CCCCCEEECHHHHHHHHHHHHHHHHCCC Q ss_conf 8983537358999999999999972378 Q gi|254780820|r 256 HGMIDRIVHRHDIPEVVSSLCKILTKSV 283 (284) Q Consensus 256 ~G~iD~iv~r~~l~~~i~~ll~il~~~~ 283 (284) .|+||.||+..++.+....+..-|.+++ T Consensus 180 ~Glv~~vv~~~~l~~~a~~~a~~la~~~ 207 (261) T 2gtr_A 180 KGLVSQVFWPGTFTQEVMVRIKELASCN 207 (261) T ss_dssp TTSCSEEECGGGHHHHHHHHHHHHHTSC T ss_pred CCCEEEEECHHHHHHHHHHHHHHHHCCC T ss_conf 7973687081889999999999998089 No 35 >2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038, NPPSFA, national project on protein structural and functional analyses; 2.00A {Geobacillus kaustophilus} Probab=97.87 E-value=0.0019 Score=45.07 Aligned_cols=161 Identities=15% Similarity=0.111 Sum_probs=104.2 Q ss_pred EEEEEEECHHHCCCCCHHHHHHHHHHHHHHHH-HCCCEEEEECCC-----CCCCCC---CHHHHHH-HHHHHHHHHHHHH Q ss_conf 99999833031853577899999999999986-289689997688-----877652---1246777-7889999999986 Q gi|254780820|r 122 LVAVVHEFSFIGGSIGIAAGEAIVKSCERAIA-EKCPLVMFTASG-----GARMQE---GILSLMQ-LPRTTIAINMLKD 191 (284) Q Consensus 122 vvv~~~df~F~GGSmG~~~geki~~a~e~A~~-~~~PlI~~~~SG-----GaRMqE---G~~sL~q-Makt~~a~~~l~~ 191 (284) |.+..+|--=-.-++....-.-+..+++.+.+ ..+-+|++..+| |+.+.| ....... ..+....+.++.+ T Consensus 13 v~~itlnrP~~~Nal~~~~~~~l~~~l~~~~~d~~v~vvvl~g~~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~l~~~l~~ 92 (257) T 2ej5_A 13 VAWLTLNRPDQLNAFTEQMNAEVTKALKQAGADPNVRCVVITGAGRAFCAGEDLSGVTEEMDHGDVLRSRYAPMMKALHH 92 (257) T ss_dssp EEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCBCC-------CHHHHHHHTHHHHHHHHHH T ss_pred EEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHC T ss_conf 99999758987789999999999999999964989089999789988657776798642000135677666789998753 Q ss_pred CCCCEEEEECCCCCCEEEEEECCCCCEEEEECCCEEECCCHH-----------HHHHHHCCC------CCCCCHHHHHHH Q ss_conf 299889985676420111120146852555314211023278-----------878763677------887202159999 Q gi|254780820|r 192 AGLPYIVVLTNPTTGGVTASYAMLGDIHLAEPGAEIGFAGRR-----------VIEQTVREK------LPDGFQRSEYLV 254 (284) Q Consensus 192 ~~lP~I~vl~~pt~GGv~AS~a~lgDiiiaep~a~igFaG~r-----------Vi~~t~~~~------lp~~fqtae~l~ 254 (284) -..|+|+.+.++|.||=. ..++..|+.||.+++.+|+...+ .....++.. +--..-+++..+ T Consensus 93 ~~kP~Iaav~G~a~GgG~-~lal~~D~~ia~~~a~f~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~ 171 (257) T 2ej5_A 93 LEKPVVAAVNGAAAGAGM-SLALACDFRLLSEKASFAPAFIHVGLVPDAGHLYYLPRLVGRAKALELAVLGEKVTAEEAA 171 (257) T ss_dssp CCSCEEEEECSEEETHHH-HHHHHSSEEEEETTCEEECCGGGGTCCCCTTHHHHHHHHHCHHHHHHHHHHCCCEEHHHHH T ss_pred CCCCEEEEECCEEEHHHH-HHHHHCCEEEECCCCEEECHHHCCCCCCCCCHHHHHHHHHCCCHHHHHHHCCCCCCHHHHH T ss_conf 699599997884646889-9998506898368878983432618688603999999995740266786417989888998 Q ss_pred HCCCCCEEECHHHHHHHHHHHHHHHHCCC Q ss_conf 68983537358999999999999972378 Q gi|254780820|r 255 EHGMIDRIVHRHDIPEVVSSLCKILTKSV 283 (284) Q Consensus 255 ~~G~iD~iv~r~~l~~~i~~ll~il~~~~ 283 (284) +.|+||.+++..++.+....+..-+.+++ T Consensus 172 ~~Glv~~v~~~~~l~~~~~~~~~~l~~~~ 200 (257) T 2ej5_A 172 ALGLATKVIPLSDWEEEVKQFAERLSAMP 200 (257) T ss_dssp HHTCCSEEECGGGHHHHHHHHHHHHHTSC T ss_pred HCCCEEEEECHHHHHHHHHHHHHHHHHCC T ss_conf 78963897287899999999999988442 No 36 >2j5g_A ALR4455 protein; enzyme evolution, C-C bond hydrolase, hydrolase, lyase, crotonase, biocatalysis, beta-diketone; 1.46A {Anabaena SP} PDB: 2j5s_A* 2j5g_D Probab=97.85 E-value=0.0032 Score=43.42 Aligned_cols=150 Identities=11% Similarity=0.060 Sum_probs=92.6 Q ss_pred HCCCCCHHHHHHHHHHHHHHHH-HCCCEEEEECCCC-----CCCCCC-----HHHHHHH-HHHHHHHHHHHHCCCCEEEE Q ss_conf 1853577899999999999986-2896899976888-----776521-----2467777-88999999998629988998 Q gi|254780820|r 132 IGGSIGIAAGEAIVKSCERAIA-EKCPLVMFTASGG-----ARMQEG-----ILSLMQL-PRTTIAINMLKDAGLPYIVV 199 (284) Q Consensus 132 ~GGSmG~~~geki~~a~e~A~~-~~~PlI~~~~SGG-----aRMqEG-----~~sL~qM-akt~~a~~~l~~~~lP~I~v 199 (284) -.-++....-+.+..+++.+.+ ..+-+|++...|. +.+.+- .-...+. ......+.++.+-..|.|++ T Consensus 44 ~~Nal~~~~~~eL~~al~~~~~d~~i~vvvl~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~PvIa~ 123 (263) T 2j5g_A 44 SSLVFTGKTHREFPDAFYDISRDRDNRVVILTGSGDAWMAEIDFPSLGDVTNPREWDKTYWEGKKVLQNLLDIEVPVISA 123 (263) T ss_dssp BSCEECHHHHHHHHHHHHHHHHCTTCCEEEEECBTTEEECEECSGGGCCTTSHHHHHHHHHHHHHHHHHHHTCCSCEEEE T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEE T ss_conf 77888999999999999999759998599997889975288723133444553101466789999999999669975876 Q ss_pred ECCCCCCEEEEEECCCCCEEEEECCCEE-EC-------C----CHHHHHHHHCCC------CCCCCHHHHHHHHCCCCCE Q ss_conf 5676420111120146852555314211-02-------3----278878763677------8872021599996898353 Q gi|254780820|r 200 LTNPTTGGVTASYAMLGDIHLAEPGAEI-GF-------A----GRRVIEQTVREK------LPDGFQRSEYLVEHGMIDR 261 (284) Q Consensus 200 l~~pt~GGv~AS~a~lgDiiiaep~a~i-gF-------a----G~rVi~~t~~~~------lp~~fqtae~l~~~G~iD~ 261 (284) +.++|.||. .++..+|++|+.+++.. +| . +.......+|.. +.-..-+|+..++.|+||. T Consensus 124 v~G~a~GGg--~lal~cD~~ia~~~a~f~~~pe~~~G~~p~~g~~~~l~~~iG~~~a~~llltg~~i~a~eA~~~Glv~~ 201 (263) T 2j5g_A 124 VNGAALLHS--EYILTTDIILASENTVFQDMPHLNAGIVPGDGVHILWPLALGLYRGRYFLFTQEKLTAQQAYELNVVHE 201 (263) T ss_dssp ECSEECSCG--GGGGGCSEEEEETTCEECCCHHHHHTCCCCSSHHHHHHHHHHHHHHHHHHHTTCCEEHHHHHHTTSCSE T ss_pred ECCCEEEEE--EECCCCCEEEECCCCEEEECHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCEE T ss_conf 188547887--742556347864786687641111166767560778898846999976561398012999977799309 Q ss_pred EECHHHHHHHHHHHHHHHHCCC Q ss_conf 7358999999999999972378 Q gi|254780820|r 262 IVHRHDIPEVVSSLCKILTKSV 283 (284) Q Consensus 262 iv~r~~l~~~i~~ll~il~~~~ 283 (284) ||+..++.+....+.+-+.+++ T Consensus 202 vv~~~~l~~~a~~~a~~ia~~~ 223 (263) T 2j5g_A 202 VLPQSKLMERAWEIARTLAKQP 223 (263) T ss_dssp EECGGGHHHHHHHHHHHHHTSC T ss_pred EECHHHHHHHHHHHHHHHHCCC T ss_conf 8787899999999999998689 No 37 >2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid metabolism, structural genomics, structural genomics consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3 Probab=97.84 E-value=0.0027 Score=44.01 Aligned_cols=161 Identities=12% Similarity=0.121 Sum_probs=100.8 Q ss_pred EEEEEEECHHHCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCC-----CCCCC-------CHH-HHHHHHH-HHHHHH Q ss_conf 999998330318535778999999999999862896899976888-----77652-------124-6777788-999999 Q gi|254780820|r 122 LVAVVHEFSFIGGSIGIAAGEAIVKSCERAIAEKCPLVMFTASGG-----ARMQE-------GIL-SLMQLPR-TTIAIN 187 (284) Q Consensus 122 vvv~~~df~F~GGSmG~~~geki~~a~e~A~~~~~PlI~~~~SGG-----aRMqE-------G~~-sL~qMak-t~~a~~ 187 (284) |....+|--=-.-++....-+.+..+++.+.++..-+|+++.+|+ +.+.| +.. ...++.. ....+. T Consensus 36 I~~ItlnrP~~~Nals~~~~~el~~~l~~~~~d~~v~vVl~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (280) T 2f6q_A 36 ITKIMFNRPKKKNAINTEMYHEIMRALKAASKDDSIITVLTGNGDYYSSGNDLTNFTDIPPGGVEEKAKNNAVLLREFVG 115 (280) T ss_dssp EEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHSSCSEEEEEESTTCSBCCBCC----CCCTTHHHHHHHHHHHHHHHHHH T ss_pred EEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHH T ss_conf 99999758987789899999999999998744999899996899877689867887413223320145778999999999 Q ss_pred HHHHCCCCEEEEECCCCCCEEEEEECCCCCEEEEECCCEEECC-----------CHHHHHHHHCCC------CCCCCHHH Q ss_conf 9986299889985676420111120146852555314211023-----------278878763677------88720215 Q gi|254780820|r 188 MLKDAGLPYIVVLTNPTTGGVTASYAMLGDIHLAEPGAEIGFA-----------GRRVIEQTVREK------LPDGFQRS 250 (284) Q Consensus 188 ~l~~~~lP~I~vl~~pt~GGv~AS~a~lgDiiiaep~a~igFa-----------G~rVi~~t~~~~------lp~~fqta 250 (284) ++.+-..|+|+.+.++|.||= ..++...|+.|+.+++.++|. |.......+|.. +--..=+| T Consensus 116 ~l~~~~kPvIaav~G~a~GgG-~~lal~~D~~ia~~~a~f~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a 194 (280) T 2f6q_A 116 CFIDFPKPLIAVVNGPAVGIS-VTLLGLFDAVYASDRATFHTPFSHLGQSPEGCSSYTFPKIMSPAKATEMLIFGKKLTA 194 (280) T ss_dssp HHHSCCSCEEEEECSCEETHH-HHGGGGCSEEEEETTCEEECCTGGGTCCCCTTHHHHHHHHHCHHHHHHHHTTCCCEEH T ss_pred HHHHCCCCEEEEECCEEEECC-CCCCCCCCCCCCCCCCEEECHHHCCCCCCCCCHHHHHHHHHCHHHHHHHHHCCCCCCH T ss_conf 999689988999768687555-4100344532205685897614325858451668997776186777999872798989 Q ss_pred HHHHHCCCCCEEECHHHHHHHHHHHHHHHHCCC Q ss_conf 999968983537358999999999999972378 Q gi|254780820|r 251 EYLVEHGMIDRIVHRHDIPEVVSSLCKILTKSV 283 (284) Q Consensus 251 e~l~~~G~iD~iv~r~~l~~~i~~ll~il~~~~ 283 (284) +..++.|+||.||+..++.+....++.-+.+++ T Consensus 195 ~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~ 227 (280) T 2f6q_A 195 GEACAQGLVTEVFPDSTFQKEVWTRLKAFAKLP 227 (280) T ss_dssp HHHHHTTSCSEEECTTTHHHHHHHHHHHHTTSC T ss_pred HHHHHCCCEEEEECHHHHHHHHHHHHHHHHCCC T ss_conf 999877993588085799999999999998689 No 38 >2fbm_A Y chromosome chromodomain protein 1, telomeric isoform B; acetyltransferase, structural genomics, structural genomics consortium, SGC; 2.28A {Homo sapiens} SCOP: c.14.1.3 Probab=97.84 E-value=0.00025 Score=51.57 Aligned_cols=160 Identities=18% Similarity=0.171 Sum_probs=102.7 Q ss_pred EEEEEEEC-HHHCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCC-----CCCCCCCHHHHH--------HHHH-HHHHH Q ss_conf 99999833-031853577899999999999986289689997688-----877652124677--------7788-99999 Q gi|254780820|r 122 LVAVVHEF-SFIGGSIGIAAGEAIVKSCERAIAEKCPLVMFTASG-----GARMQEGILSLM--------QLPR-TTIAI 186 (284) Q Consensus 122 vvv~~~df-~F~GGSmG~~~geki~~a~e~A~~~~~PlI~~~~SG-----GaRMqEG~~sL~--------qMak-t~~a~ 186 (284) |+...+|. -=-.-+++...-+.+..+++.+.+...-+|++...| |+.+.+-...+. .+.. ....+ T Consensus 33 va~itln~rP~~~Nal~~~~~~eL~~al~~~~~d~~~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (291) T 2fbm_A 33 FTQIVLSTRSTEKNALNTEVIKEIVNALNSAAADDSKLVLFSAAGSVFCCGLDFGYFVKHLRNNRNTASLEMVDTIKNFV 112 (291) T ss_dssp EEEEEECCSSSSTTCBCHHHHHHHHHHHHHHHHSSCSEEEEEECSSCSBCCBCHHHHHHHHHHCHHHHHHHHHHHHHHHH T ss_pred EEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH T ss_conf 99999798972357989999999999999987399879999788995674887554532222321023799999999999 Q ss_pred HHHHHCCCCEEEEECCCCCCEEEEEECCCCCEEEEECCCEEECCCHH-----------HHHHHHCCC------CCCCCHH Q ss_conf 99986299889985676420111120146852555314211023278-----------878763677------8872021 Q gi|254780820|r 187 NMLKDAGLPYIVVLTNPTTGGVTASYAMLGDIHLAEPGAEIGFAGRR-----------VIEQTVREK------LPDGFQR 249 (284) Q Consensus 187 ~~l~~~~lP~I~vl~~pt~GGv~AS~a~lgDiiiaep~a~igFaG~r-----------Vi~~t~~~~------lp~~fqt 249 (284) .++.....|.|+.+.++|.||- ..++...|+.|+.+.|.+++.-.+ .....+|.. +--.--+ T Consensus 113 ~~l~~~~kPvIAav~G~a~GgG-~~lal~cD~ria~~~a~f~~pe~~~Gi~p~~~~~~~l~r~iG~~~a~~llltg~~~~ 191 (291) T 2fbm_A 113 NTFIQFKKPIVVSVNGPAIGLG-ASILPLCDLVWANEKAWFQTPYTTFGQSPDGCSSITFPKMMGKASANEMLIAGRKLT 191 (291) T ss_dssp HHHHHCCSCEEEEECSCEETHH-HHTGGGSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHCHHHHHHHHTSCCEEE T ss_pred HHHHHCCCCEEEEECCEECCCC-CCEEECCCEECCCHHHHHHHHHCEECCCCCCCCCCCHHHHCCHHHHHHHHHCCCCCC T ss_conf 9998679989999799103188-730023565301443332311200065346544310045504568879998087245 Q ss_pred HHHHHHCCCCCEEECHHHHHHHHHHHHHHHHCC Q ss_conf 599996898353735899999999999997237 Q gi|254780820|r 250 SEYLVEHGMIDRIVHRHDIPEVVSSLCKILTKS 282 (284) Q Consensus 250 ae~l~~~G~iD~iv~r~~l~~~i~~ll~il~~~ 282 (284) |+..++.|+||.||+..++.+....+.+-+.+. T Consensus 192 a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~ 224 (291) T 2fbm_A 192 AREACAKGLVSQVFLTGTFTQEVMIQIKELASY 224 (291) T ss_dssp HHHHHHTTSCSEEECSTTSHHHHHHHHHHHTTS T ss_pred HHHHHHCCCCCEEECHHHHHHHHHHHHHHHHCC T ss_conf 999998499308708268999999999999867 No 39 >2iex_A Dihydroxynapthoic acid synthetase; crotonase-like family, beta-BETA-alpha, coenzyme biosyntheses, naphthoate synthase; 2.20A {Geobacillus kaustophilus HTA426} PDB: 2uzf_A* Probab=97.83 E-value=0.0024 Score=44.27 Aligned_cols=156 Identities=13% Similarity=0.235 Sum_probs=100.6 Q ss_pred EEEEEEECHHHCCCCCHHHHHHHHHHHHHHHHH-CCCEEEEECCCCC-----CCCC-----CHHHHHH-HH-HHHHHHHH Q ss_conf 999998330318535778999999999999862-8968999768887-----7652-----1246777-78-89999999 Q gi|254780820|r 122 LVAVVHEFSFIGGSIGIAAGEAIVKSCERAIAE-KCPLVMFTASGGA-----RMQE-----GILSLMQ-LP-RTTIAINM 188 (284) Q Consensus 122 vvv~~~df~F~GGSmG~~~geki~~a~e~A~~~-~~PlI~~~~SGGa-----RMqE-----G~~sL~q-Ma-kt~~a~~~ 188 (284) |+...+|--=-.-+++...-+.+..+++.+.++ .+-+|++..+|+. .+.+ +...-.+ +. ....-+.. T Consensus 22 V~~itlnrp~~~Nals~~m~~~l~~al~~~~~d~~v~~vvl~g~g~~f~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (272) T 2iex_A 22 IAKITINRPEVHNAFRPKTVNEMIDAFTKARDDSNIGVIILTGAGGKAFCSGGDQKVRGHGGYVGEDEIPRLNVLDLQRL 101 (272) T ss_dssp EEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSSEEECCBC---------------CCCTHHHHHHH T ss_pred EEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHH T ss_conf 99999757353579899999999999999861999559998437865400377187760356420245677777789999 Q ss_pred HHHCCCCEEEEECCCCCCEEEEEECCCCCEEEEECCCEEECCCHHH-----------HHHH-----------HCCCCCCC Q ss_conf 9862998899856764201111201468525553142110232788-----------7876-----------36778872 Q gi|254780820|r 189 LKDAGLPYIVVLTNPTTGGVTASYAMLGDIHLAEPGAEIGFAGRRV-----------IEQT-----------VREKLPDG 246 (284) Q Consensus 189 l~~~~lP~I~vl~~pt~GGv~AS~a~lgDiiiaep~a~igFaG~rV-----------i~~t-----------~~~~lp~~ 246 (284) +..-..|+|+.+.++|.||= ...+...|+.|+.++|.+++..-++ .... +++.+ T Consensus 102 ~~~~~kPvIAav~G~a~GgG-~~lal~~D~ria~~~a~f~~pe~~lGl~p~~~~~~~l~r~vg~~~a~~lll~g~~i--- 177 (272) T 2iex_A 102 IRVIPKPVIAMVAGYAIGGG-HVLHVVCDLTIAADNAIFGQTGPKVGSFDGGYGAGYLARIVGHKKAREIWYLCRQY--- 177 (272) T ss_dssp HHHSSSCEEEEECSEEETHH-HHHHHHSSEEEEETTCEEECCHHHHTCCCCSTTTHHHHHHHCHHHHHHHHHHCCCE--- T ss_pred HHHCCCCEEEEECCEEEHHH-HHHHHCCCCCEECCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC--- T ss_conf 98399989999889843789-99986036445668878987500134076601578999997299999999708865--- Q ss_pred CHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHCCC Q ss_conf 0215999968983537358999999999999972378 Q gi|254780820|r 247 FQRSEYLVEHGMIDRIVHRHDIPEVVSSLCKILTKSV 283 (284) Q Consensus 247 fqtae~l~~~G~iD~iv~r~~l~~~i~~ll~il~~~~ 283 (284) +++..++.|++|.|++..++.+....+.+-+.+++ T Consensus 178 --~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~l~~~~ 212 (272) T 2iex_A 178 --TAQEALEMGLVNKVVPLEQLEEETVKWAQEILEKS 212 (272) T ss_dssp --EHHHHHHTTSSSEEECGGGHHHHHHHHHHHHTTSC T ss_pred --CHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHHCC T ss_conf --69999767997698077899999999999987269 No 40 >2q35_A CURF; crotonase, lyase; 1.65A {Lyngbya majuscula 19L} PDB: 2q34_A 2q2x_A Probab=97.82 E-value=0.00044 Score=49.81 Aligned_cols=157 Identities=16% Similarity=0.208 Sum_probs=96.2 Q ss_pred EEEEEEECHHHCCCCCHHHHHHHHHHHHHHHHH-CCCEEEEECCC-----CCCCCCCHHHHHHHHH----HHHHHHHHHH Q ss_conf 999998330318535778999999999999862-89689997688-----8776521246777788----9999999986 Q gi|254780820|r 122 LVAVVHEFSFIGGSIGIAAGEAIVKSCERAIAE-KCPLVMFTASG-----GARMQEGILSLMQLPR----TTIAINMLKD 191 (284) Q Consensus 122 vvv~~~df~F~GGSmG~~~geki~~a~e~A~~~-~~PlI~~~~SG-----GaRMqEG~~sL~qMak----t~~a~~~l~~ 191 (284) |+...+|--=-.-++....-+.+..+++.+.++ .+-+|++...| |+.+.+ +.+..+ ....+..+.+ T Consensus 13 v~~itlnrp~~~Nal~~~~~~el~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~----~~~~~~~~~~~~~~~~~l~~ 88 (243) T 2q35_A 13 VVQITMKDESSRNGFSPSIVEGLRHCFSVVAQNQQYKVVILTGYGNYFSSGASKEF----LIRKTRGEVEVLDLSGLILD 88 (243) T ss_dssp EEEEEECCGGGTSBSCHHHHHHHHHHHHHHHHCTTCCEEEEECBTTEEECBSCHHH----HHHHHTTCCCCCCCHHHHHT T ss_pred EEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEECCCCHHH----HHCCCHHHHHHHHHHHHHHH T ss_conf 99999868886789899999999999999976989679999788984479884454----42022113789999999984 Q ss_pred CCCCEEEEECCCCCCEEEEEECCCCCEEEEECCCEEECC-----------CHHHHHHHHCCC------CCCCCHHHHHHH Q ss_conf 299889985676420111120146852555314211023-----------278878763677------887202159999 Q gi|254780820|r 192 AGLPYIVVLTNPTTGGVTASYAMLGDIHLAEPGAEIGFA-----------GRRVIEQTVREK------LPDGFQRSEYLV 254 (284) Q Consensus 192 ~~lP~I~vl~~pt~GGv~AS~a~lgDiiiaep~a~igFa-----------G~rVi~~t~~~~------lp~~fqtae~l~ 254 (284) ...|+|+.+.++|.||- +.++...|+.|+.+++.+++. |.......+|.. +--..-+++..+ T Consensus 89 ~~kPvIaav~G~a~GgG-~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~~~~~~l~~~iG~~~a~~l~ltg~~~~a~eA~ 167 (243) T 2q35_A 89 CEIPIIAAMQGHSFGGG-LLLGLYADFVVFSQESVYATNFMKYGFTPVGATSLILREKLGSELAQEMIYTGENYRGKELA 167 (243) T ss_dssp CCSCEEEEECSEEETHH-HHHHHTSSEEEEESSSEEECCHHHHTSCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHH T ss_pred CCCCEEEEECCEEEECC-CHHCCCCCEEEECCCCEECCCCCCCCCCCCCCCCEECCCCCCHHHHHHHHHCCCCCCHHHHH T ss_conf 89989999688577166-62020466787524343316500314555676411212234538887765038989899999 Q ss_pred HCCCCCEEECHHHHHHHHHHHHHHHHCCC Q ss_conf 68983537358999999999999972378 Q gi|254780820|r 255 EHGMIDRIVHRHDIPEVVSSLCKILTKSV 283 (284) Q Consensus 255 ~~G~iD~iv~r~~l~~~i~~ll~il~~~~ 283 (284) +.|++|.||+..++.+....+.+-+.+++ T Consensus 168 ~~Glv~~vv~~~~l~~~a~~la~~la~~~ 196 (243) T 2q35_A 168 ERGIPFPVVSRQDVLNYAQQLGQKIAKSP 196 (243) T ss_dssp HTTCSSCEECHHHHHHHHHHHHHHHTTSC T ss_pred HCCCCEECCCHHHHHHHHHHHHHHHHCCC T ss_conf 77994070885789999999999998389 No 41 >3hp0_A Putative polyketide biosynthesis enoyl-COA hydratase homolog PKSH; polyketide synthase, enoyl COA hydratase,isomerase; 2.32A {Bacillus subtilis} Probab=97.81 E-value=0.0004 Score=50.11 Aligned_cols=147 Identities=13% Similarity=0.078 Sum_probs=90.6 Q ss_pred EEEEEEECHHHCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCC-----CCCCC-------CHHHHHHHHHHHHHHHHH Q ss_conf 999998330318535778999999999999862896899976888-----77652-------124677778899999999 Q gi|254780820|r 122 LVAVVHEFSFIGGSIGIAAGEAIVKSCERAIAEKCPLVMFTASGG-----ARMQE-------GILSLMQLPRTTIAINML 189 (284) Q Consensus 122 vvv~~~df~F~GGSmG~~~geki~~a~e~A~~~~~PlI~~~~SGG-----aRMqE-------G~~sL~qMakt~~a~~~l 189 (284) |.+..+|--=-.-+++...-+.+..+++.+-+..+-+|+++.+|. +...| +......+-.....+.++ T Consensus 17 va~itlnrP~~~Nal~~~~~~el~~~l~~~~~~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i 96 (267) T 3hp0_A 17 VCYITFHRPEANNTINDTLIEECLQVLNQCETSTVTVVVLEGLPEVFCFGADFQEIYQEMKRGRKQASSQEPLYDLWMKL 96 (267) T ss_dssp EEEEEECCGGGTTCBCSHHHHHHHHHHHHHHHSSCCEEEEECCSSCSBCCBCHHHHHHTTTTTCCSCCCCHHHHHHHHHH T ss_pred EEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH T ss_conf 99999757774579999999999999999746995599997899873479973225200221002223216899999999 Q ss_pred HHCCCCEEEEECCCCCCEEEEEECCCCCEEEEECCCEEECCCHHH----------HHHHHCCCC------CCCCHHHHHH Q ss_conf 862998899856764201111201468525553142110232788----------787636778------8720215999 Q gi|254780820|r 190 KDAGLPYIVVLTNPTTGGVTASYAMLGDIHLAEPGAEIGFAGRRV----------IEQTVREKL------PDGFQRSEYL 253 (284) Q Consensus 190 ~~~~lP~I~vl~~pt~GGv~AS~a~lgDiiiaep~a~igFaG~rV----------i~~t~~~~l------p~~fqtae~l 253 (284) .....|+|+.+.++|.||- +..+...|+.|+.++|.++|..-++ +.+.+|... --.--+|+.. T Consensus 97 ~~~~kpvIaav~G~a~GgG-~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~l~r~iG~~~a~~l~ltg~~i~a~eA 175 (267) T 3hp0_A 97 QTGPYVTISHVRGKVNAGG-LGFVSATDIAIADQTASFSLSELLFGLYPACVLPFLIRRIGRQKAHYMTLMTKPISVQEA 175 (267) T ss_dssp HHSSSEEEEEECSEEETTH-HHHHHHSSEEEECTTCEEECCGGGGTCCCTTTHHHHHHHHCHHHHHHHHHHCCCBCHHHH T ss_pred HHCCCCEEEEEECCEECCH-HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCHHHHHHHHHHCCCCCHHHH T ss_conf 7389888999656323130-687776476666540111474125067887024358777296999999862897889999 Q ss_pred HHCCCCCEEECHHHHH Q ss_conf 9689835373589999 Q gi|254780820|r 254 VEHGMIDRIVHRHDIP 269 (284) Q Consensus 254 ~~~G~iD~iv~r~~l~ 269 (284) ++.|+||.||+..|+. T Consensus 176 ~~~Glv~~vv~~~d~~ 191 (267) T 3hp0_A 176 SEWGLIDAFDAESDVL 191 (267) T ss_dssp HHHTSSSCBCSCTTHH T ss_pred HHCCCCCEECCCHHHH T ss_conf 8889946766955999 No 42 >3pea_A Enoyl-COA hydratase/isomerase family protein; structural genomics, center for structural genomics of infec diseases, csgid; HET: FLC PG4; 1.82A {Bacillus anthracis} Probab=97.80 E-value=0.003 Score=43.64 Aligned_cols=163 Identities=12% Similarity=0.220 Sum_probs=100.6 Q ss_pred EECEEEEEEEEECHHHCCCCCHHHHHHHHHHHHHHHHH-CCCEEEEECCCC-----CCCCCC-----HHHHHHHHHH-HH Q ss_conf 70414999998330318535778999999999999862-896899976888-----776521-----2467777889-99 Q gi|254780820|r 117 VRDFKLVAVVHEFSFIGGSIGIAAGEAIVKSCERAIAE-KCPLVMFTASGG-----ARMQEG-----ILSLMQLPRT-TI 184 (284) Q Consensus 117 I~G~~vvv~~~df~F~GGSmG~~~geki~~a~e~A~~~-~~PlI~~~~SGG-----aRMqEG-----~~sL~qMakt-~~ 184 (284) +++. |.+..+|--=. -++....-+.+..+++.+.++ .+-+|+++.+|+ +.+.|- -.....+.+. .. T Consensus 12 ~~~~-i~~itlnrp~~-Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~ 89 (261) T 3pea_A 12 VEDH-IAVATLNHAPA-NAMSSQVMHDVTELIDQVEKDDNIRVVVIHGEGRFFSAGADIKEFTSVTEAKQATELAQLGQV 89 (261) T ss_dssp EETT-EEEEEECCTTT-TCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCGGGSSTTCCHHHHHHHHHHHHH T ss_pred EECC-EEEEEECCCCC-CCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHH T ss_conf 9999-99999889875-889999999999999999868892899994899973588745554100011100012221246 Q ss_pred HHHHHHHCCCCEEEEECCCCCCEEEEEECCCCCEEEEECCCEEECCCHH-----------HHHHHHCCC------C-CCC Q ss_conf 9999986299889985676420111120146852555314211023278-----------878763677------8-872 Q gi|254780820|r 185 AINMLKDAGLPYIVVLTNPTTGGVTASYAMLGDIHLAEPGAEIGFAGRR-----------VIEQTVREK------L-PDG 246 (284) Q Consensus 185 a~~~l~~~~lP~I~vl~~pt~GGv~AS~a~lgDiiiaep~a~igFaG~r-----------Vi~~t~~~~------l-p~~ 246 (284) .+.++.....|+|+.+.++|.||- +.++...|+.|+.+++.+++..-+ ...+.+|.. + .+- T Consensus 90 ~~~~~~~~~~pvIaav~G~a~GgG-~~lal~~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~iG~~~a~~l~l~g~~ 168 (261) T 3pea_A 90 TFERVEKCSKPVIAAIHGAALGGG-LEFAMSCHMRFATESAKLGLPELTLGLIPGFAGTQRLPRYVGKAKACEMMLTSTP 168 (261) T ss_dssp HHHHHHTCSSCEEEEECSEEETHH-HHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHCCC T ss_pred HHHHHHHCCCCEEEEEEEEEEHHH-HHHHHCCCEEEECCCCEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHCCCC T ss_conf 777766247868999943886288-8877504559987999897873156768661399999999575523331221871 Q ss_pred CHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHCCC Q ss_conf 0215999968983537358999999999999972378 Q gi|254780820|r 247 FQRSEYLVEHGMIDRIVHRHDIPEVVSSLCKILTKSV 283 (284) Q Consensus 247 fqtae~l~~~G~iD~iv~r~~l~~~i~~ll~il~~~~ 283 (284) =+|+..++.|++|.+++..++-+....+..-+.+++ T Consensus 169 -~~a~eA~~~Glv~~vv~~~~~~~~~~~~a~~~~~~~ 204 (261) T 3pea_A 169 -ITGAEALKWGLVNGVFAEETFLDDTLKVAKQIAGKS 204 (261) T ss_dssp -EEHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSC T ss_pred -CCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCC T ss_conf -449999864997767785899999999999997179 No 43 >3h02_A Naphthoate synthase; IDP00995, lyase, structural genomics, center for structural genomics of infectious diseases, csgid; 2.15A {Salmonella typhimurium} Probab=97.80 E-value=0.0012 Score=46.53 Aligned_cols=146 Identities=14% Similarity=0.242 Sum_probs=92.3 Q ss_pred HCCCCCHHHHHHHHHHHHHHHHHCC-CEEEEECCC------CCCCCCCH-------HHHHHHHHHHHHHHHHHHCCCCEE Q ss_conf 1853577899999999999986289-689997688------87765212-------467777889999999986299889 Q gi|254780820|r 132 IGGSIGIAAGEAIVKSCERAIAEKC-PLVMFTASG------GARMQEGI-------LSLMQLPRTTIAINMLKDAGLPYI 197 (284) Q Consensus 132 ~GGSmG~~~geki~~a~e~A~~~~~-PlI~~~~SG------GaRMqEG~-------~sL~qMakt~~a~~~l~~~~lP~I 197 (284) ..-++....-+-+..+++.+.++.- =+|++..+| |.-..+-. ............+..+.....|+| T Consensus 47 ~~Nals~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~d~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvI 126 (288) T 3h02_A 47 VRNAFRPLTVKEMIQALADARYDDNVGVIILTGEGDKAFCAGGDQKVRGDYGGYQDDSGVHHLNVLDFQRQIRTCPKPVV 126 (288) T ss_dssp GTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSSEEECCBCC---------------CCCTHHHHHHHHHHCSSCEE T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCEECCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCEE T ss_conf 36799999999999999999739996689998799974234630776643254420145655323689999970999899 Q ss_pred EEECCCCCCEEEEEECCCCCEEEEECCCEEECCCHHH-----------HHHHH-----------CCCCCCCCHHHHHHHH Q ss_conf 9856764201111201468525553142110232788-----------78763-----------6778872021599996 Q gi|254780820|r 198 VVLTNPTTGGVTASYAMLGDIHLAEPGAEIGFAGRRV-----------IEQTV-----------REKLPDGFQRSEYLVE 255 (284) Q Consensus 198 ~vl~~pt~GGv~AS~a~lgDiiiaep~a~igFaG~rV-----------i~~t~-----------~~~lp~~fqtae~l~~ 255 (284) +.+.++|+||- +..++.+|+.|+.+++.+++...++ ....+ ++.+ +++..++ T Consensus 127 aav~G~a~GgG-~~la~~cD~~ia~~~a~f~~pe~~~Gl~p~~~~~~~l~~~ig~~~a~~l~ltg~~~-----~a~eA~~ 200 (288) T 3h02_A 127 AMVAGYSIGGG-HVLHMMCDLTIAAENAIFGQTGPKVGSFDGGWGASYMARIVGQKKAREIWFLCRQY-----DAQQALD 200 (288) T ss_dssp EEECSEEETHH-HHHHHHSSEEEEETTCEEECCGGGGTCCCCSHHHHHHHHHHCHHHHHHHHHHCCCE-----EHHHHHH T ss_pred EEECCEEEEHH-HHHHHHCCEEECCCCCEEECHHHHHCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCC-----CHHHHHH T ss_conf 99889875063-89987357104169858987244217678665899999984899999999759841-----5999998 Q ss_pred CCCCCEEECHHHHHHHHHHHHHHHHCCC Q ss_conf 8983537358999999999999972378 Q gi|254780820|r 256 HGMIDRIVHRHDIPEVVSSLCKILTKSV 283 (284) Q Consensus 256 ~G~iD~iv~r~~l~~~i~~ll~il~~~~ 283 (284) .|+||.|++..++.+....+..-+.+++ T Consensus 201 ~Glv~~v~~~~~~~~~a~~~a~~~~~~~ 228 (288) T 3h02_A 201 MGLVNTVVPLADLEKETVRWCREMLQNS 228 (288) T ss_dssp TTSSSEEECGGGHHHHHHHHHHHHHTSC T ss_pred CCCEEEECCHHHHHHHHHHHHHHHHHCC T ss_conf 8998785463666999999999998469 No 44 >1uiy_A Enoyl-COA hydratase; lyase, beta-oxidation, crotonase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.85A {Thermus thermophilus} SCOP: c.14.1.3 Probab=97.80 E-value=0.002 Score=44.99 Aligned_cols=157 Identities=12% Similarity=0.149 Sum_probs=101.4 Q ss_pred EEEEEEEECHHHCCCCCHHHHHHHHHHHHHHHHH-CCCEEEEECCCCCCCCCCH-------------HHHHHHHHHHHHH Q ss_conf 4999998330318535778999999999999862-8968999768887765212-------------4677778899999 Q gi|254780820|r 121 KLVAVVHEFSFIGGSIGIAAGEAIVKSCERAIAE-KCPLVMFTASGGARMQEGI-------------LSLMQLPRTTIAI 186 (284) Q Consensus 121 ~vvv~~~df~F~GGSmG~~~geki~~a~e~A~~~-~~PlI~~~~SGGaRMqEG~-------------~sL~qMakt~~a~ 186 (284) +|.+..+|--=-.-+++...-..+..+++.+.++ .+-+|++..+|+.---.+- .....+......+ T Consensus 8 ~ia~itlnrP~~~Nal~~~~~~el~~~l~~~~~d~~v~~vvi~g~g~~f~~g~dl~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (253) T 1uiy_A 8 HVAVVFLNDPERRNPLSPEMALSLLQALDDLEADPGVRAVVLTGRGKAFSAGADLAFLERVTELGAEENYRHSLSLMRLF 87 (253) T ss_dssp SEEEEEECCGGGTCCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCCCHHHHHHHTTSCHHHHHHHHHHHHHHH T ss_pred CEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHH T ss_conf 99999985877678989999999999999997399965999978886644564067664123455301223212366899 Q ss_pred HHHHHCCCCEEEEECCCCCCEEEEEECCCCCEEEEECCCEEECCCHHH-------------------HHH--HHCCCCCC Q ss_conf 999862998899856764201111201468525553142110232788-------------------787--63677887 Q gi|254780820|r 187 NMLKDAGLPYIVVLTNPTTGGVTASYAMLGDIHLAEPGAEIGFAGRRV-------------------IEQ--TVREKLPD 245 (284) Q Consensus 187 ~~l~~~~lP~I~vl~~pt~GGv~AS~a~lgDiiiaep~a~igFaG~rV-------------------i~~--t~~~~lp~ 245 (284) ..+.....|+|+++.++|.||-. ..++..|+.|+.+++.+++.-.++ ..+ .+++.+ T Consensus 88 ~~l~~~~kpvIaai~G~a~GgG~-~lal~cD~ria~~~a~~~~pe~~~g~~~~~g~~~l~~~iG~~~a~~l~l~g~~~-- 164 (253) T 1uiy_A 88 HRVYTYPKPTVAAVNGPAVAGGA-GLALACDLVVMDEEARLGYTEVKIGFVAALVSVILVRAVGEKAAKDLLLTGRLV-- 164 (253) T ss_dssp HHHHHCSSCEEEEECSCEETHHH-HHHHTSSEEEEETTCEEECCHHHHTCCCHHHHHHHHHHSCHHHHHHHHHHCCEE-- T ss_pred HHHHHCCCCEEEEECCEEEHHHH-HHHHHCCEEEECCCCCCCCCCCEEEECCCHHHHHHHHHHCHHHHHHHHHCCCCC-- T ss_conf 99996899889999385762889-999734788954555115740006226745999999987899999987329857-- Q ss_pred CCHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHCCC Q ss_conf 20215999968983537358999999999999972378 Q gi|254780820|r 246 GFQRSEYLVEHGMIDRIVHRHDIPEVVSSLCKILTKSV 283 (284) Q Consensus 246 ~fqtae~l~~~G~iD~iv~r~~l~~~i~~ll~il~~~~ 283 (284) +|+..++.|+||.|++..++.+....+.+.+.+.+ T Consensus 165 ---~a~eA~~~Glv~~v~~~~~~~~~a~~~a~~~~~~~ 199 (253) T 1uiy_A 165 ---EAREAKALGLVNRIAPPGKALEEAKALAEEVAKNA 199 (253) T ss_dssp ---EHHHHHHHTSCSEEECTTCHHHHHHHHHHHHHHSC T ss_pred ---CHHHHHHCCCCCEECCHHHHHHHHHHHHHHHHHCC T ss_conf ---79999867996386576889999999999998279 No 45 >3gow_A PAAG, probable enoyl-COA hydratase; the spiral fold, the crotonase superfamily, lyase; 1.85A {Thermus thermophilus HB8} PDB: 3hrx_A Probab=97.79 E-value=0.0012 Score=46.47 Aligned_cols=159 Identities=19% Similarity=0.203 Sum_probs=101.6 Q ss_pred EEEEEEECHHHCCCCCHHHHHHHHHHHHHHHH-HCCCEEEEECCCCCCCCCCHH--------HHH-HHHHHHHHHHHHHH Q ss_conf 99999833031853577899999999999986-289689997688877652124--------677-77889999999986 Q gi|254780820|r 122 LVAVVHEFSFIGGSIGIAAGEAIVKSCERAIA-EKCPLVMFTASGGARMQEGIL--------SLM-QLPRTTIAINMLKD 191 (284) Q Consensus 122 vvv~~~df~F~GGSmG~~~geki~~a~e~A~~-~~~PlI~~~~SGGaRMqEG~~--------sL~-qMakt~~a~~~l~~ 191 (284) |....+|--=-.-++....-+.+..+++.+.+ ..+-+|++..+|+.=-..+.+ ... .+......+..+.. T Consensus 10 i~~ItlnrP~~~Nals~~~~~~l~~al~~~~~d~~v~~vvl~~~g~~f~~g~dl~~~~~~~~~~~~~~~~~~~~~~~l~~ 89 (254) T 3gow_A 10 VLVLTLNRPEKLNAITGELLDALYAALKEGEEDREVRALLLTGAGRAFSAGQDLTEFGDRKPDYEAHLRRYNRVVEALSG 89 (254) T ss_dssp EEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCGGGTTTSCCCHHHHTHHHHHHHHHHHT T ss_pred EEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHH T ss_conf 99999768876789999999999999999976889389999678987565630565214523578999999999999971 Q ss_pred CCCCEEEEECCCCCCEEEEEECCCCCEEEEECCCEEECCC-----------HHHHHHHHCCCC-------CCCCHHHHHH Q ss_conf 2998899856764201111201468525553142110232-----------788787636778-------8720215999 Q gi|254780820|r 192 AGLPYIVVLTNPTTGGVTASYAMLGDIHLAEPGAEIGFAG-----------RRVIEQTVREKL-------PDGFQRSEYL 253 (284) Q Consensus 192 ~~lP~I~vl~~pt~GGv~AS~a~lgDiiiaep~a~igFaG-----------~rVi~~t~~~~l-------p~~fqtae~l 253 (284) ...|+|+.+.+.|.||- +..++..|+.|+.++|.+++.. .....+.+|... .+-| +++.. T Consensus 90 ~~kPvIa~v~G~a~GgG-~~la~~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~~~ltg~~~-~a~eA 167 (254) T 3gow_A 90 LEKPLVVAVNGVAAGAG-MSLALWGDLRLAAVGASFTTAFVRIGLVPDSGLSFLLPRLVGLAKAQELLLLSPRL-SAEEA 167 (254) T ss_dssp CSSCEEEEECSEEETHH-HHHHTTCSEEEEETTCEEECCGGGGTCCCCTTHHHHHHHHHCHHHHHHHHHHCCCE-EHHHH T ss_pred CCCCEEEEECCEEEHHH-HHHHHCCCEEEECCCCEEECHHCCCCCCCCCCHHHHHHHHHCHHHHHHHHHCCCEE-CHHHH T ss_conf 99989999878421254-88775255158738878986110757687524999999986766799998639532-59999 Q ss_pred HHCCCCCEEECHHHHHHHHHHHHHHHHCC Q ss_conf 96898353735899999999999997237 Q gi|254780820|r 254 VEHGMIDRIVHRHDIPEVVSSLCKILTKS 282 (284) Q Consensus 254 ~~~G~iD~iv~r~~l~~~i~~ll~il~~~ 282 (284) ++.|+||.||+..++.+....+..-+.+. T Consensus 168 ~~~Glv~~vv~~~~l~~~~~~~a~~i~~~ 196 (254) T 3gow_A 168 LALGLVHRVVPAEKLMEEALSLAKELAQG 196 (254) T ss_dssp HHHTSCSEEECGGGHHHHHHHHHHHHHTS T ss_pred HHCCCEEEEECCHHHHHHHHHHHHHHHHC T ss_conf 98799799827365688889999999730 No 46 >3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural genomics, center for structural genomics of infectious diseases, csgid; HET: MSE; 1.80A {Bacillus anthracis} Probab=97.78 E-value=0.0009 Score=47.47 Aligned_cols=160 Identities=15% Similarity=0.215 Sum_probs=102.2 Q ss_pred EEEEEEECHHHCCCCCHHHHHHHHHHHHHHHHH-CCCEEEEECCCC------CCCCC----CHHHH-HHHHHHHHHHHHH Q ss_conf 999998330318535778999999999999862-896899976888------77652----12467-7778899999999 Q gi|254780820|r 122 LVAVVHEFSFIGGSIGIAAGEAIVKSCERAIAE-KCPLVMFTASGG------ARMQE----GILSL-MQLPRTTIAINML 189 (284) Q Consensus 122 vvv~~~df~F~GGSmG~~~geki~~a~e~A~~~-~~PlI~~~~SGG------aRMqE----G~~sL-~qMakt~~a~~~l 189 (284) |+..-+|--=-.-+++...-+.+..+++.+.++ .+-+|++..+|+ ....+ ..... .........+..+ T Consensus 19 i~~Itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~~f~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l 98 (265) T 3kqf_A 19 VVKISLNRERQANSLSLALLEELQNILTQINEEANTRVVILTGAGEKAFCAGADLKERAGMNEEQVRHAVSMIRTTMEMV 98 (265) T ss_dssp EEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESSSSEEECCBCHHHHTTCCHHHHHHHHHHHHHHHHHH T ss_pred EEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCEECCCHHHHHHHCCCCCCCCCHHHHHHHHHHH T ss_conf 89999768987899999999999999999864899569999658996132431255542000011000013565799999 Q ss_pred HHCCCCEEEEECCCCCCEEEEEECCCCCEEEEECCCEEECCC-----------HHHHHHHHCCCC-------CCCCHHHH Q ss_conf 862998899856764201111201468525553142110232-----------788787636778-------87202159 Q gi|254780820|r 190 KDAGLPYIVVLTNPTTGGVTASYAMLGDIHLAEPGAEIGFAG-----------RRVIEQTVREKL-------PDGFQRSE 251 (284) Q Consensus 190 ~~~~lP~I~vl~~pt~GGv~AS~a~lgDiiiaep~a~igFaG-----------~rVi~~t~~~~l-------p~~fqtae 251 (284) .....|.|+.+.++|.||- +..+...|+.|+.+++.+++.. .......+|... -+- =+|+ T Consensus 99 ~~~~kpvIaaV~G~a~GgG-~~lal~~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~llltg~~-~~a~ 176 (265) T 3kqf_A 99 EQLPQPVIAAINGIALGGG-TELSLACDFRIAAESASLGLTETTLAIIPGAGGTQRLPRLIGVGRAKELIYTGRR-ISAQ 176 (265) T ss_dssp HTCSSCEEEEECSEEETHH-HHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHCCC-EEHH T ss_pred HHCCCCEEEEEEEEEEEHH-HHHHHHCCEEEECCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC-CCHH T ss_conf 9689888999966895178-8998737889976998898864487208884288870887329999999984886-7889 Q ss_pred HHHHCCCCCEEECHHHHHHHHHHHHHHHHCCC Q ss_conf 99968983537358999999999999972378 Q gi|254780820|r 252 YLVEHGMIDRIVHRHDIPEVVSSLCKILTKSV 283 (284) Q Consensus 252 ~l~~~G~iD~iv~r~~l~~~i~~ll~il~~~~ 283 (284) ..++.|++|.|++..++.+....+.+-+.+.+ T Consensus 177 ea~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~ 208 (265) T 3kqf_A 177 EAKEYGLVEFVVPVHLLEEKAIEIAEKIASNG 208 (265) T ss_dssp HHHHHTSCSEEECGGGHHHHHHHHHHHHHTSC T ss_pred HHHHCCCCCEECCHHHHHHHHHHHHHHHHHCC T ss_conf 99974997676687899999999999865179 No 47 >2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase, crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens} PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E* 2vsu_F* 2vsu_E* 2vsu_C* Probab=97.76 E-value=0.0019 Score=45.04 Aligned_cols=165 Identities=16% Similarity=0.213 Sum_probs=102.4 Q ss_pred EEECEEEEEEEEECHHHCCCCCHHHHHHHHHHHHHHHHH-CCCEEEEECCCCCCCCCCH-H-HHHHHH---------HHH Q ss_conf 870414999998330318535778999999999999862-8968999768887765212-4-677778---------899 Q gi|254780820|r 116 NVRDFKLVAVVHEFSFIGGSIGIAAGEAIVKSCERAIAE-KCPLVMFTASGGARMQEGI-L-SLMQLP---------RTT 183 (284) Q Consensus 116 ~I~G~~vvv~~~df~F~GGSmG~~~geki~~a~e~A~~~-~~PlI~~~~SGGaRMqEG~-~-sL~qMa---------kt~ 183 (284) .+++ .|....+|--=-.-++....-+.+..+++.+.++ .+-+|++..+|++ ---|. + .+++.. +.. T Consensus 14 ~~~~-gi~~i~lnrP~~~Nal~~~~~~~l~~al~~~~~d~~v~vvvl~g~g~~-F~aG~Dl~~~~~~~~~~~~~~~~~~~ 91 (276) T 2j5i_A 14 EIED-GIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAGEA-WTAGMDLKEYFREVDAGPEILQEKIR 91 (276) T ss_dssp EEET-EEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTEEEEEEEESTTC-SBCCBCHHHHHHHHHHSCTTHHHHHH T ss_pred EEEC-CEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCC-CCCCCCHHHHHHHHCCCCHHHHHHHH T ss_conf 9999-999999788886778899999999999999973999179999789886-41788789986410022103566666 Q ss_pred -----HHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCCEEEEECCCEEECCCHHH-----------HHHHHCCC----- Q ss_conf -----999999862998899856764201111201468525553142110232788-----------78763677----- Q gi|254780820|r 184 -----IAINMLKDAGLPYIVVLTNPTTGGVTASYAMLGDIHLAEPGAEIGFAGRRV-----------IEQTVREK----- 242 (284) Q Consensus 184 -----~a~~~l~~~~lP~I~vl~~pt~GGv~AS~a~lgDiiiaep~a~igFaG~rV-----------i~~t~~~~----- 242 (284) ..+..+.....|+|+.+.++|.||= +.+++..|+.||.+++.+++.-.++ ..+.+|.. T Consensus 92 ~~~~~~~~~~i~~~~kPvIaav~G~a~GgG-~~lal~cD~ria~~~a~f~~pe~~~G~~p~~~~~~~l~~~~g~~~a~~l 170 (276) T 2j5i_A 92 REASQWQWKLLRMYAKPTIAMVNGWCFGGG-FSPLVACDLAICADEATFGLSEINWGIPPGNLVSKAMADTVGHRQSLMY 170 (276) T ss_dssp HHHHHHHTTTTTTCSSCEEEEECSCEEGGG-HHHHHHSSEEEEETTCEEECGGGGGTCCCCTTHHHHHHHHSCHHHHHHH T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCEEHHH-HHHHHCCCHHEECCCCCEECCCCCCCCCCCCCHHHHHHHHHCHHHHHHH T ss_conf 777888999999789989994699450043-4877534410067888400332323248861179999998281455455 Q ss_pred -CCCCCHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHCCC Q ss_conf -88720215999968983537358999999999999972378 Q gi|254780820|r 243 -LPDGFQRSEYLVEHGMIDRIVHRHDIPEVVSSLCKILTKSV 283 (284) Q Consensus 243 -lp~~fqtae~l~~~G~iD~iv~r~~l~~~i~~ll~il~~~~ 283 (284) +.-..=+|+..++.|+||.||+..++.+....+..-+.+++ T Consensus 171 ll~g~~~~a~eA~~~Glv~~vv~~~el~~~a~~~a~~l~~~~ 212 (276) T 2j5i_A 171 IMTGKTFGGQKAAEMGLVNESVPLAQLREVTIELARNLLEKN 212 (276) T ss_dssp HHHCCEEEHHHHHHHTSSSEEECHHHHHHHHHHHHHHHHTSC T ss_pred HCCCCCCCHHHHHHCCCCCEECCCHHHHHHHHHHHHHHHCCC T ss_conf 305887874689972993476381265999999999998589 No 48 >3bpp_A 1510-N membrane protease; specific for A stomatin homolog, archaea, thermostable, catalytic DYAD, hydrolase; 2.30A {Pyrococcus horikoshii} PDB: 2deo_A Probab=97.72 E-value=0.0017 Score=45.52 Aligned_cols=126 Identities=16% Similarity=0.207 Sum_probs=82.4 Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCC-EEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEE- Q ss_conf 535778999999999999862896-899976888776521246777788999999998629988998567642011112- Q gi|254780820|r 134 GSIGIAAGEAIVKSCERAIAEKCP-LVMFTASGGARMQEGILSLMQLPRTTIAINMLKDAGLPYIVVLTNPTTGGVTAS- 211 (284) Q Consensus 134 GSmG~~~geki~~a~e~A~~~~~P-lI~~~~SGGaRMqEG~~sL~qMakt~~a~~~l~~~~lP~I~vl~~pt~GGv~AS- 211 (284) |.+++...+.+.++++.|.+.+.. +|+...|.|... .+...+..+ ++..+.|.+.+... .||.+|| T Consensus 17 G~I~~~~~~~i~~~l~~a~~~~~kaivL~IdSPGG~v-------~~~~~I~~~---i~~~~~~v~~~v~~--~~~~AaS~ 84 (230) T 3bpp_A 17 GQITSYTYDQFDRYITIAEQDNAEAIIIELDTPGGRA-------DAMMNIVQR---IQQSKIPVIIYVYP--PGASAASA 84 (230) T ss_dssp SSBCHHHHHHHHHHHHHHHHTTCSEEEEEEEBSCBCH-------HHHHHHHHH---HHTCSSCEEEEECS--TTCEEETH T ss_pred EEECHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCH-------HHHHHHHHH---HHHCCCCCCEEEEE--CCHHHHHH T ss_conf 6888699999999999997689986999985988189-------999999999---86046788579997--34467777 Q ss_pred ---ECCCCCEEEEECCCEEECCCHHHH-------------------------HHHHCCC-------C-CCCCHHHHHHHH Q ss_conf ---014685255531421102327887-------------------------8763677-------8-872021599996 Q gi|254780820|r 212 ---YAMLGDIHLAEPGAEIGFAGRRVI-------------------------EQTVREK-------L-PDGFQRSEYLVE 255 (284) Q Consensus 212 ---~a~lgDiiiaep~a~igFaG~rVi-------------------------~~t~~~~-------l-p~~fqtae~l~~ 255 (284) .|+-+|.+++.|++.+|..|+..- .+..+.. + ..-+.+++-.++ T Consensus 85 g~~ia~a~d~i~~~p~s~iGs~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~v~~~~~~~~~eA~~ 164 (230) T 3bpp_A 85 GTYIALGSHLIAMAPGTSIGACRPILGYSQNGSIIEAPPAITNYFIAYIKSLAQESGRNATIAEEFITKDLSLTPEEALK 164 (230) T ss_dssp HHHHHHTSSEEEECTTCEEECCCCEEECCSSSCCEECCHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHTCCEECHHHHHH T ss_pred HHHHHHCCCEEEECCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHH T ss_conf 89988508989978998175645423578850267778888999999999999993949999998876687864999998 Q ss_pred CCCCCEEEC-HHHHHHH Q ss_conf 898353735-8999999 Q gi|254780820|r 256 HGMIDRIVH-RHDIPEV 271 (284) Q Consensus 256 ~G~iD~iv~-r~~l~~~ 271 (284) .|++|.|.. +.++-+. T Consensus 165 ~GlvD~i~~~~~~ll~~ 181 (230) T 3bpp_A 165 YGVIEVVARDINELLKK 181 (230) T ss_dssp TTSCSEECSSHHHHHHH T ss_pred CCCCCEECCCHHHHHHH T ss_conf 19730023899999987 No 49 >3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase superfamily, dimer of trimers, PSI-2, NYSGXRC, structural genomics; 2.32A {Ruegeria pomeroyi} Probab=97.72 E-value=0.0045 Score=42.30 Aligned_cols=155 Identities=15% Similarity=0.193 Sum_probs=102.5 Q ss_pred EEEEEEECHHHCCCCCHHHHHHHHHHHHHHHH-HCCCEEEEECCC-----CCCCCCCH----------HHHHHHH-HHHH Q ss_conf 99999833031853577899999999999986-289689997688-----87765212----------4677778-8999 Q gi|254780820|r 122 LVAVVHEFSFIGGSIGIAAGEAIVKSCERAIA-EKCPLVMFTASG-----GARMQEGI----------LSLMQLP-RTTI 184 (284) Q Consensus 122 vvv~~~df~F~GGSmG~~~geki~~a~e~A~~-~~~PlI~~~~SG-----GaRMqEG~----------~sL~qMa-kt~~ 184 (284) |+...+|-.=. -+++...-+.+..+++.+.+ ..+-+|++..+| |+-+.+-. ..+.++. .... T Consensus 17 Va~itlnrp~~-Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (263) T 3l3s_A 17 VLTLTLGRAPA-HPLSRAMIAALHDALRRAMGDDHVHVLVIHGPGRIFCAGHDLKEIGRHRADPDEGRAFVTDLFEACSA 95 (263) T ss_dssp EEEEEECSTTT-CCCCHHHHHHHHHHHHHHHTCTTCCEEEEECCSSEEECCSCSCCCCC-----CCSHHHHHHHHHHHHH T ss_pred EEEEEECCCCC-CCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEECCCCHHCCCCCCCCCCHHHHHHHHHHHHHH T ss_conf 99999678665-89999999999999999975889569999789998586752021334444542002467899999999 Q ss_pred HHHHHHHCCCCEEEEECCCCCCEEEEEECCCCCEEEEECCCEEECCCHHH------HHH---------------HHCCCC Q ss_conf 99999862998899856764201111201468525553142110232788------787---------------636778 Q gi|254780820|r 185 AINMLKDAGLPYIVVLTNPTTGGVTASYAMLGDIHLAEPGAEIGFAGRRV------IEQ---------------TVREKL 243 (284) Q Consensus 185 a~~~l~~~~lP~I~vl~~pt~GGv~AS~a~lgDiiiaep~a~igFaG~rV------i~~---------------t~~~~l 243 (284) .+.++.....|.|+.+.++|.||- ..+++..|+.|+.+++.+++...+. .-. .+++.+ T Consensus 96 ~~~~~~~~~kpvIaav~G~a~GgG-~~lal~~D~ria~~~a~~~~p~~~~g~~~~~~~~~l~r~ig~~~a~~l~ltg~~i 174 (263) T 3l3s_A 96 LMLDLAHCPKPTIALVEGIATAAG-LQLMAACDLAYASPAARFCLPGVQNGGFCTTPAVAVSRVIGRRAVTEMALTGATY 174 (263) T ss_dssp HHHHHHTCSSCEEEEESSEEETHH-HHHHHHSSEEEECTTCEEECCTTTTTSCCHHHHHHHHTTSCHHHHHHHHHHCCEE T ss_pred HHHHHHHCCCCEEEEECCCEECCC-HHHHHCCCCCEECCCCEECCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCC T ss_conf 999998679988998458076141-6345422332221024121642206115101331023345466665422658866 Q ss_pred CCCCHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHCCC Q ss_conf 8720215999968983537358999999999999972378 Q gi|254780820|r 244 PDGFQRSEYLVEHGMIDRIVHRHDIPEVVSSLCKILTKSV 283 (284) Q Consensus 244 p~~fqtae~l~~~G~iD~iv~r~~l~~~i~~ll~il~~~~ 283 (284) +++..++.|+||.||+..++.+....+..-+.+++ T Consensus 175 -----~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~ 209 (263) T 3l3s_A 175 -----DADWALAAGLINRILPEAALATHVADLAGALAARN 209 (263) T ss_dssp -----EHHHHHHHTSSSEECCHHHHHHHHHHHHHHHHSSC T ss_pred -----CHHHHHHCCCCCEECCHHHHHHHHHHHHHHHHCCC T ss_conf -----89999986996386288899999999999998689 No 50 >3ot6_A Enoyl-COA hydratase/isomerase family protein; structural genomics, PSI-2, protein structure initiative; 2.50A {Pseudomonas syringae PV} Probab=97.67 E-value=0.001 Score=47.01 Aligned_cols=159 Identities=14% Similarity=0.195 Sum_probs=97.6 Q ss_pred EEEEEEECHHHCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCC-----CCCCC---CCHHHHHHH-HHHHHHHHHHHHC Q ss_conf 99999833031853577899999999999986289689997688-----87765---212467777-8899999999862 Q gi|254780820|r 122 LVAVVHEFSFIGGSIGIAAGEAIVKSCERAIAEKCPLVMFTASG-----GARMQ---EGILSLMQL-PRTTIAINMLKDA 192 (284) Q Consensus 122 vvv~~~df~F~GGSmG~~~geki~~a~e~A~~~~~PlI~~~~SG-----GaRMq---EG~~sL~qM-akt~~a~~~l~~~ 192 (284) |.+..+|-.= ..+++...-+.+..+++.+.+.+ .+|+++.+| |+... ....+-.++ ......+..+..- T Consensus 16 i~~itln~pk-~Nal~~~~~~~l~~~l~~~~~d~-~Vvi~s~~~~~Fs~G~dl~~~~~~~~~~~~~~~~~~~l~~~l~~~ 93 (232) T 3ot6_A 16 VATLTLNNGK-VNAISPDVIIAFNAALDQAEKDR-AIVIVTGQPGILSGGYDLKVMTSSAEAAINLVAQGSTLARRMLSH 93 (232) T ss_dssp EEEEEECCTT-TTCBCHHHHHHHHHHHHHHHHTT-CEEEEECBTEEEECCBCHHHHHHCHHHHHHHHHHHHHHHHHHHTC T ss_pred EEEEEECCCC-CCCCCHHHHHHHHHHHHHHCCCC-EEEEEECCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC T ss_conf 9999988998-89899999999999999855498-299997799967643224311111124667767899999999708 Q ss_pred CCCEEEEECCCCCCEEEEEECCCCCEEEEECC-C-------EEECCCHH----HHHHHHCCC------CCCCCHHHHHHH Q ss_conf 99889985676420111120146852555314-2-------11023278----878763677------887202159999 Q gi|254780820|r 193 GLPYIVVLTNPTTGGVTASYAMLGDIHLAEPG-A-------EIGFAGRR----VIEQTVREK------LPDGFQRSEYLV 254 (284) Q Consensus 193 ~lP~I~vl~~pt~GGv~AS~a~lgDiiiaep~-a-------~igFaG~r----Vi~~t~~~~------lp~~fqtae~l~ 254 (284) ..|+|+.+.+.|.||- .-+++.+|+.++.++ + .+|+..+. ...+.+|.. +--..=+++..+ T Consensus 94 ~~p~Ia~v~G~~~GgG-~~lal~~D~ria~~~~~~~~~pe~~~Gi~p~~~~~~~l~~~ig~~~a~~l~ltg~~~~a~eA~ 172 (232) T 3ot6_A 94 PFPIIVACPGHAVAKG-AFLLLSADYRIGVAGPFSIGLNEVQIGMTMHHAGIELARDRLRKSAFNRSVINAEMFDPEGAM 172 (232) T ss_dssp SSCEEEECCEEEETHH-HHHHTTSSEEEEECSSCCEECCTTTTTCCCCHHHHHHHHHHSCHHHHHHHHTSCCEECHHHHH T ss_pred CCCEEEEEECCEECCC-CHHHHHCCCHHHHHCCCCCCCCCEEECCCCCCCHHHHHHHHCCHHHHHHHHHCCCCCCHHHHH T ss_conf 9977999806350662-144551461345305543323001566656763445777772725777898708989899999 Q ss_pred HCCCCCEEECHHHHHHHHHHHHHHHHCCC Q ss_conf 68983537358999999999999972378 Q gi|254780820|r 255 EHGMIDRIVHRHDIPEVVSSLCKILTKSV 283 (284) Q Consensus 255 ~~G~iD~iv~r~~l~~~i~~ll~il~~~~ 283 (284) +.|+||.|++..++.+....+.+-+.+.+ T Consensus 173 ~~Glv~~v~~~~~l~~~a~~~a~~ia~~~ 201 (232) T 3ot6_A 173 AAGFLDKVVSVEELQGAALAVAAQLKKIN 201 (232) T ss_dssp HHTSCSEEECTTTHHHHHHHHHHHHTTSC T ss_pred HCCCCCEEECHHHHHHHHHHHHHHHHCCC T ss_conf 77997587087899999999999998689 No 51 >3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics, protein structure initiative; 1.58A {Legionella pneumophila subsp} Probab=97.65 E-value=0.0017 Score=45.47 Aligned_cols=160 Identities=13% Similarity=0.151 Sum_probs=99.2 Q ss_pred EEEEEEE-CHHHCCCCCHHHHHHHHHHHHHHHHH-CCCEEEEECCC-----CCCCCCC-------HHHHHHHHHH-HHHH Q ss_conf 9999983-30318535778999999999999862-89689997688-----8776521-------2467777889-9999 Q gi|254780820|r 122 LVAVVHE-FSFIGGSIGIAAGEAIVKSCERAIAE-KCPLVMFTASG-----GARMQEG-------ILSLMQLPRT-TIAI 186 (284) Q Consensus 122 vvv~~~d-f~F~GGSmG~~~geki~~a~e~A~~~-~~PlI~~~~SG-----GaRMqEG-------~~sL~qMakt-~~a~ 186 (284) |.+..+| ..- .-++....-+.+..+++.+.++ .+=+|++..+| |+.+.+- .....+..+. ...+ T Consensus 14 v~~itlnrp~~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~~~~F~aG~dl~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (268) T 3i47_A 14 VGLLTMNRISK-HNAFDNQLLTEMRIRLDSAINDTNVRVIVLKANGKHFSAGADLTWMQSMANFTEEENLEDSLVLGNLM 92 (268) T ss_dssp EEEEEECCTTT-TTCBCHHHHHHHHHHHHHHHHCTTCSEEEEEECSSCSBCSBCHHHHHHHHTCCHHHHHHHHHHHHHHH T ss_pred EEEEEECCCCC-CCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHH T ss_conf 99999768886-79999999999999999997499906999916777633564155431112221000024678899999 Q ss_pred HHHHHCCCCEEEEECCCCCCEEEEEECCCCCEEEEECCCEEECCCHH----------HHHHHHCCCC------CCCCHHH Q ss_conf 99986299889985676420111120146852555314211023278----------8787636778------8720215 Q gi|254780820|r 187 NMLKDAGLPYIVVLTNPTTGGVTASYAMLGDIHLAEPGAEIGFAGRR----------VIEQTVREKL------PDGFQRS 250 (284) Q Consensus 187 ~~l~~~~lP~I~vl~~pt~GGv~AS~a~lgDiiiaep~a~igFaG~r----------Vi~~t~~~~l------p~~fqta 250 (284) ..+.....|+|+.+.++|.||- ...+...|+.||.++|.+++..-+ .....++... --.--+| T Consensus 93 ~~~~~~~kPvIaav~G~a~GgG-~~lal~cD~ria~~~a~f~~pe~~~G~~p~~~~~~~~~~ig~~~a~~l~ltg~~~~a 171 (268) T 3i47_A 93 YSISQSPKPTIAMVQGAAFGGG-AGLAAACDIAIASTSARFCFSEVKLGLIPAVISPYVVRAIGERAAKMLFMSAEVFDA 171 (268) T ss_dssp HHHHHCSSCEEEEECSEEETHH-HHHHHHSSEEEEETTCEEECCGGGGTCCCTTTHHHHHHHHCHHHHHHHHHHCCEEEH T ss_pred HHHHHCCCCEEEEECCEEEECC-CHHHCCCCEEECCCCCEEECCEEEEEECCCCCHHHHCHHHHHHHHHHHHHCCCCCCH T ss_conf 9998489878999678585055-211104424562799799874245664576421322203456678998760897888 Q ss_pred HHHHHCCCCCEEECHHHHHHHHHHHHHHHHCCC Q ss_conf 999968983537358999999999999972378 Q gi|254780820|r 251 EYLVEHGMIDRIVHRHDIPEVVSSLCKILTKSV 283 (284) Q Consensus 251 e~l~~~G~iD~iv~r~~l~~~i~~ll~il~~~~ 283 (284) +..++.|+||.||+..++.+....+.+-+.+.+ T Consensus 172 ~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~ 204 (268) T 3i47_A 172 TRAYSLNLVQHCVPDDTLLEFTLKYASQISNNA 204 (268) T ss_dssp HHHHHTTSCSEEECGGGHHHHHHHHHHHHHTSC T ss_pred HHHHHCCCEEEEECHHHHHHHHHHHHHHHHCCC T ss_conf 999777981086084799999999999997789 No 52 >3hin_A Putative 3-hydroxybutyryl-COA dehydratase; structural genomics, protein structure initiative; 2.00A {Rhodopseudomonas palustris} Probab=97.64 E-value=0.0011 Score=46.70 Aligned_cols=162 Identities=12% Similarity=0.093 Sum_probs=101.1 Q ss_pred ECEEEEEEEEECHHHCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCC-----CCCCCC----HHHHHHHH-HHHHHHH Q ss_conf 0414999998330318535778999999999999862896899976888-----776521----24677778-8999999 Q gi|254780820|r 118 RDFKLVAVVHEFSFIGGSIGIAAGEAIVKSCERAIAEKCPLVMFTASGG-----ARMQEG----ILSLMQLP-RTTIAIN 187 (284) Q Consensus 118 ~G~~vvv~~~df~F~GGSmG~~~geki~~a~e~A~~~~~PlI~~~~SGG-----aRMqEG----~~sL~qMa-kt~~a~~ 187 (284) .|. |....+|--=-.-+|....-+-+..+++.+ ++.+-+|++..+|+ +.+.|- .....++. .....+. T Consensus 23 ~g~-Va~itlnrP~~~Nal~~~~~~~L~~al~~~-d~~~rvvvl~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~ 100 (275) T 3hin_A 23 VGP-VLTIGLNRPKKRNALNDGLMAALKDCLTDI-PDQIRAVVIHGIGDHFSAGLDLSELRERDATEGLVHSQTWHRVFD 100 (275) T ss_dssp ETT-EEEEEECCGGGTTCBCHHHHHHHHHHTSSC-CTTCCEEEEEESSSCSBCCBCGGGCCCCCHHHHHHHHHHHHHHHH T ss_pred ECC-EEEEEECCCCCCCCCCHHHHHHHHHHHHHC-CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 899-999996587767898999999999999841-668848999678997458883677532001233556678999999 Q ss_pred HHHHCCCCEEEEECCCCCCEEEEEECCCCCEEEEECCCEEECCCHHH-----------HHHHHCCC------CCCCCHHH Q ss_conf 99862998899856764201111201468525553142110232788-----------78763677------88720215 Q gi|254780820|r 188 MLKDAGLPYIVVLTNPTTGGVTASYAMLGDIHLAEPGAEIGFAGRRV-----------IEQTVREK------LPDGFQRS 250 (284) Q Consensus 188 ~l~~~~lP~I~vl~~pt~GGv~AS~a~lgDiiiaep~a~igFaG~rV-----------i~~t~~~~------lp~~fqta 250 (284) ++.....|+|+.+.++|.||- ...+...|++|+.+++.++|.-.++ ....+|.. |--.--+| T Consensus 101 ~i~~~~kPvIaav~G~a~GgG-~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~~~~~~l~~~iG~~~a~~l~ltg~~~~A 179 (275) T 3hin_A 101 KIQYCRVPVIAALKGAVIGGG-LELACAAHIRVAEASAYYALPEGSRGIFVGGGGSVRLPRLIGVARMADMMLTGRVYSA 179 (275) T ss_dssp HHHTCSSCEEEEECSEEETHH-HHHHHHSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEH T ss_pred HHHHCCCCEEEEECCEEEHHH-HHHHHHCCCCHHHHHCHHHHHHCEEEECCCHHHHHHHHHHHCHHHHHHHHHHCCCCCH T ss_conf 997189988999868774288-9999822613375523324221106225654888889987054677667640896869 Q ss_pred HHHHHCCCCCEEECHHHHHHHHHHHHHHHHCC Q ss_conf 99996898353735899999999999997237 Q gi|254780820|r 251 EYLVEHGMIDRIVHRHDIPEVVSSLCKILTKS 282 (284) Q Consensus 251 e~l~~~G~iD~iv~r~~l~~~i~~ll~il~~~ 282 (284) +..++.|+||.||+..++.+....+.+-+.++ T Consensus 180 ~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~ 211 (275) T 3hin_A 180 AEGVVHGFSQYLIENGSAYDKALELGNRVAQN 211 (275) T ss_dssp HHHHHHTSCSEEESSSCHHHHHHHHHHHHTTS T ss_pred HHHHHCCCCCEECCHHHHHHHHHHHHHHHHCC T ss_conf 99998399687668258999999999999866 No 53 >2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics, NPPSFA; 1.80A {Geobacillus kaustophilus HTA426} PDB: 2qq3_A Probab=97.62 E-value=0.0026 Score=44.04 Aligned_cols=161 Identities=16% Similarity=0.169 Sum_probs=96.3 Q ss_pred EEEEEEEECHHHCCCCCHHHHHHHHHHHHHHHHH-CCCEEEEECCCCCCCCCCHHH-HH-------HHHHHHHHHHHHHH Q ss_conf 4999998330318535778999999999999862-896899976888776521246-77-------77889999999986 Q gi|254780820|r 121 KLVAVVHEFSFIGGSIGIAAGEAIVKSCERAIAE-KCPLVMFTASGGARMQEGILS-LM-------QLPRTTIAINMLKD 191 (284) Q Consensus 121 ~vvv~~~df~F~GGSmG~~~geki~~a~e~A~~~-~~PlI~~~~SGGaRMqEG~~s-L~-------qMakt~~a~~~l~~ 191 (284) +|.+..+|--=-.-+++...-+.+..+++.+.++ .+=+|+++.+|+.=-..+-+. +. ...+......++.. T Consensus 14 ~va~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~~~~vvl~~~~~~f~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (258) T 2pbp_A 14 AVGIIELARPDVLNALSRQMVAEIVAAVEAFDRNEKVRVIVLTGRGRAFAAGADIQEMAKDDPIRLEWLNQFADWDRLSI 93 (258) T ss_dssp TEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTEEECCCCHHHHHTCCHHHHHHHCTTHHHHHHHT T ss_pred CEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCEECCCCHHHHHCCCCHHHHHHHHHHHHHHHHC T ss_conf 99999983878679999999999999999986099858999907986401275388773132114677777678899851 Q ss_pred CCCCEEEEECCCCCCEEEEEECCCCCEEEEECCCEEECCC-----------HHHHHHHHCCC------CCCCCHHHHHHH Q ss_conf 2998899856764201111201468525553142110232-----------78878763677------887202159999 Q gi|254780820|r 192 AGLPYIVVLTNPTTGGVTASYAMLGDIHLAEPGAEIGFAG-----------RRVIEQTVREK------LPDGFQRSEYLV 254 (284) Q Consensus 192 ~~lP~I~vl~~pt~GGv~AS~a~lgDiiiaep~a~igFaG-----------~rVi~~t~~~~------lp~~fqtae~l~ 254 (284) ...|+|+.+.++|.||= ..+++..|+.|+.+++.+++.- .......+|.. +--.-=+++..+ T Consensus 94 ~~~p~Iaai~G~a~GgG-~~lal~~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~l~l~g~~~~a~eA~ 172 (258) T 2pbp_A 94 VKTPMIAAVNGLALGGG-FELALSCDLIVASSAAEFGFPEVNLGVMPGAGGTQRLTKLIGPKRALEWLWTGARMSAKEAE 172 (258) T ss_dssp CCSCEEEEECSEEETHH-HHHHHTSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHH T ss_pred CCCCEEEEECCEEEEHH-HHHHHHCCEEEECCCCEEECCCCCCCCCCCCCHHHHHHHHHCHHHHHHHHHCCCCCCHHHHH T ss_conf 89988999806576166-89986278799879978987311568798722999999986899999999829978799999 Q ss_pred HCCCCCEEECHHHHHHHHHHHHHHHHCC Q ss_conf 6898353735899999999999997237 Q gi|254780820|r 255 EHGMIDRIVHRHDIPEVVSSLCKILTKS 282 (284) Q Consensus 255 ~~G~iD~iv~r~~l~~~i~~ll~il~~~ 282 (284) +.|+||.||+..++.+....+..-+.+. T Consensus 173 ~~Glv~~vv~~~~l~~~a~~~a~~la~~ 200 (258) T 2pbp_A 173 QLGIVNRVVSPELLMEETMRLAGRLAEQ 200 (258) T ss_dssp HTTSCSEEECGGGHHHHHHHHHHHHHTS T ss_pred HCCCEEEEECHHHHHHHHHHHHHHHHHC T ss_conf 8899018725788888999999999857 No 54 >3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease, MPCS, fatty acid metabolism, lipid metabolism, lyase; 1.80A {Mycobacterium tuberculosis} Probab=97.60 E-value=0.00096 Score=47.28 Aligned_cols=160 Identities=13% Similarity=0.162 Sum_probs=96.7 Q ss_pred EEEEEEECHHHCCCCCHHHHHHHHHHHHHHHHHC-CCEEEEECCC-----CCCCCCCH---HHHHHHHHHHHHHHHHHHC Q ss_conf 9999983303185357789999999999998628-9689997688-----87765212---4677778899999999862 Q gi|254780820|r 122 LVAVVHEFSFIGGSIGIAAGEAIVKSCERAIAEK-CPLVMFTASG-----GARMQEGI---LSLMQLPRTTIAINMLKDA 192 (284) Q Consensus 122 vvv~~~df~F~GGSmG~~~geki~~a~e~A~~~~-~PlI~~~~SG-----GaRMqEG~---~sL~qMakt~~a~~~l~~~ 192 (284) |++..+|--=-.-+++...-+.+..+++.+.++. +-+|++...| |+.+.|.. .+-.........+.++... T Consensus 35 i~~itlnrP~~~Nal~~~~~~~l~~al~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (278) T 3h81_A 35 VGIITLNRPQALNALNSQVMNEVTSAATELDDDPDIGAIIITGSAKAFAAGADIKEMADLTFADAFTADFFATWGKLAAV 114 (278) T ss_dssp EEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEECCSSEEECCBCSHHHHTCCHHHHHHHTTTGGGHHHHTC T ss_pred EEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHCC T ss_conf 99999768886789999999999999999975888489999479874003675787652111121367888887775348 Q ss_pred CCCEEEEECCCCCCEEEEEECCCCCEEEEECCCEEECCC-----------HHHHHHHHCCC------CCCCCHHHHHHHH Q ss_conf 998899856764201111201468525553142110232-----------78878763677------8872021599996 Q gi|254780820|r 193 GLPYIVVLTNPTTGGVTASYAMLGDIHLAEPGAEIGFAG-----------RRVIEQTVREK------LPDGFQRSEYLVE 255 (284) Q Consensus 193 ~lP~I~vl~~pt~GGv~AS~a~lgDiiiaep~a~igFaG-----------~rVi~~t~~~~------lp~~fqtae~l~~ 255 (284) ..|+|+.+.+.|.||= +.++...|+.|+.++|.+++.. ..-....+|.. +--..-+++..++ T Consensus 115 ~~PvIa~v~G~a~GgG-~~lal~~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~ig~~~a~~l~l~g~~~~a~eA~~ 193 (278) T 3h81_A 115 RTPTIAAVAGYALGGG-CELAMMCDVLIAADTAKFGQPEIKLGVLPGMGGSQRLTRAIGKAKAMDLILTGRTMDAAEAER 193 (278) T ss_dssp CSCEEEEECBEEETHH-HHHHHHSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHH T ss_pred CCCEEEEECCEECHHH-HHHHHHCCEEEEECCCEEECCCCCCCCCCCCCHHHHHHHHHCHHHHHHHHHHCCCCCHHHHHH T ss_conf 9989999807271798-999997899998399889785118166864139999999848999999998299678999998 Q ss_pred CCCCCEEECHHHHHHHHHHHHHHHHCC Q ss_conf 898353735899999999999997237 Q gi|254780820|r 256 HGMIDRIVHRHDIPEVVSSLCKILTKS 282 (284) Q Consensus 256 ~G~iD~iv~r~~l~~~i~~ll~il~~~ 282 (284) .|++|.|++..++.+....+..-+.+. T Consensus 194 ~GLv~~vv~~~~~~~~a~~~a~~~a~~ 220 (278) T 3h81_A 194 SGLVSRVVPADDLLTEARATATTISQM 220 (278) T ss_dssp HTSCSEEECGGGHHHHHHHHHHHHHTS T ss_pred CCCCCEECCHHHHHHHHHHHHHHHHCC T ss_conf 699725000677899999999999818 No 55 >3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; 2.05A {Streptomyces coelicolor A3} Probab=97.59 E-value=0.0067 Score=41.03 Aligned_cols=161 Identities=16% Similarity=0.222 Sum_probs=101.5 Q ss_pred EEECEEEEEEEEECHHHCCCCCHHHHHHHHHHHHHHHHH-CCCEEEEECCCC-----CCCCCCH--------HHHHH-HH Q ss_conf 870414999998330318535778999999999999862-896899976888-----7765212--------46777-78 Q gi|254780820|r 116 NVRDFKLVAVVHEFSFIGGSIGIAAGEAIVKSCERAIAE-KCPLVMFTASGG-----ARMQEGI--------LSLMQ-LP 180 (284) Q Consensus 116 ~I~G~~vvv~~~df~F~GGSmG~~~geki~~a~e~A~~~-~~PlI~~~~SGG-----aRMqEG~--------~sL~q-Ma 180 (284) .+++ .|+..-+|--=-.-+++...-.-+..+++.+.++ .+-+|++..+|. +.+.+=. ....+ +. T Consensus 22 e~~~-~V~~ItlnrP~~~Nals~~~~~el~~al~~~~~d~~v~~vVitg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~ 100 (279) T 3g64_A 22 EITD-GVATVTLARPDKLNALTFEAYADLRDLLAELSRRRAVRALVLAGEGRGFCSGGDVDEIIGATLSMDTARLLDFNR 100 (279) T ss_dssp EEET-TEEEEEESCGGGTTCBCHHHHHHHHHHHHHHHHTTCCSEEEEEECSSCSBCCBCTTTTHHHHTTCCHHHHHHHHH T ss_pred EEEC-CEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEECCCHHHHHHCCCCCHHHHHHHHHH T ss_conf 9989-999999748876789899999999999999960999579999479873681250575431121000245555555 Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCCEEEEECCCEEECCCH------------HHHHHHH--------- Q ss_conf 8999999998629988998567642011112014685255531421102327------------8878763--------- Q gi|254780820|r 181 RTTIAINMLKDAGLPYIVVLTNPTTGGVTASYAMLGDIHLAEPGAEIGFAGR------------RVIEQTV--------- 239 (284) Q Consensus 181 kt~~a~~~l~~~~lP~I~vl~~pt~GGv~AS~a~lgDiiiaep~a~igFaG~------------rVi~~t~--------- 239 (284) .....+..+.....|+|+.+.+++.||- ..+++..|+.|+.+++.+++..- ......+ T Consensus 101 ~~~~~~~~i~~~~kPvIaav~G~a~GgG-~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~~g~~~~l~r~iG~~~a~~l~ 179 (279) T 3g64_A 101 MTGQVVRAVRECPFPVIAALHGVAAGAG-AVLALAADFRVADPSTRFAFLFTRVGLSGGDMGAAYLLPRVVGLGHATRLL 179 (279) T ss_dssp HHHHHHHHHHHSSSCEEEEECSEEETHH-HHHHHHSSEEEECTTCEEECCGGGGTCCSCCTTHHHHHHHHHCHHHHHHHH T ss_pred HHHHHHHHHHHCCCCEEEEECCEEEHHH-HHHHHHCCEEECCCCCEEECCHHHCCCCCCCCHHHHHHHHHHCHHHHHHHH T ss_conf 5666667887199989999789653032-899873467641645655362110284765223999999984857999999 Q ss_pred --CCCCCCCCHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHCCC Q ss_conf --67788720215999968983537358999999999999972378 Q gi|254780820|r 240 --REKLPDGFQRSEYLVEHGMIDRIVHRHDIPEVVSSLCKILTKSV 283 (284) Q Consensus 240 --~~~lp~~fqtae~l~~~G~iD~iv~r~~l~~~i~~ll~il~~~~ 283 (284) ++.+ +|+..++.|+||.||+..++.+....+..-+.+++ T Consensus 180 l~g~~i-----~a~eA~~~Glv~~vv~~~~l~~~~~~~a~~i~~~~ 220 (279) T 3g64_A 180 MLGDTV-----RAPEAERIGLISELTEEGRADEAARTLARRLADGP 220 (279) T ss_dssp HHCCCE-----EHHHHHHHTCCSEECCTTCHHHHHHHHHHHHHTSC T ss_pred HCCCCC-----CHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCC T ss_conf 818999-----89999974995403587899999999999987467 No 56 >1sg4_A 3,2-trans-enoyl-COA isomerase, mitochondrial; crotonase fold; HET: CO8; 1.30A {Homo sapiens} SCOP: c.14.1.3 PDB: 1xx4_A Probab=97.57 E-value=0.0022 Score=44.61 Aligned_cols=149 Identities=13% Similarity=0.126 Sum_probs=93.5 Q ss_pred CCCCHHHHHHHHHHHHHHHH-HCCCEEEEECCCC------CCCCC----CHHHHHHH-HHHHHHHHHHHHCCCCEEEEEC Q ss_conf 53577899999999999986-2896899976888------77652----12467777-8899999999862998899856 Q gi|254780820|r 134 GSIGIAAGEAIVKSCERAIA-EKCPLVMFTASGG------ARMQE----GILSLMQL-PRTTIAINMLKDAGLPYIVVLT 201 (284) Q Consensus 134 GSmG~~~geki~~a~e~A~~-~~~PlI~~~~SGG------aRMqE----G~~sL~qM-akt~~a~~~l~~~~lP~I~vl~ 201 (284) -+++...-+.+..+++.+.+ ..+-+|++..+|+ +.+.| .-....++ ......+.++.....|+|+.+. T Consensus 26 Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kpvIa~v~ 105 (260) T 1sg4_A 26 NSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGVFSAGLDLTEMCGRSPAHYAGYWKAVQELWLRLYQSNLVLVSAIN 105 (260) T ss_dssp TEECHHHHHHHHHHHHHHHHCTTCCEEEEEESSTEESCCEECGGGGSSCCHHHHHHHHHHHHHHHHHHHTCSSEEEEEEC T ss_pred CCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEC T ss_conf 88999999999999999985899559999828999452899765542101001222125678999997558997899856 Q ss_pred CCCCCEEEEEECCCCCEEEEECCCE--E-------ECCCH----HHHHHHHCCC------CCCCCHHHHHHHHCCCCCEE Q ss_conf 7642011112014685255531421--1-------02327----8878763677------88720215999968983537 Q gi|254780820|r 202 NPTTGGVTASYAMLGDIHLAEPGAE--I-------GFAGR----RVIEQTVREK------LPDGFQRSEYLVEHGMIDRI 262 (284) Q Consensus 202 ~pt~GGv~AS~a~lgDiiiaep~a~--i-------gFaG~----rVi~~t~~~~------lp~~fqtae~l~~~G~iD~i 262 (284) ++|.||- ..+++..|+.|+.++|. + |+..+ ....+.+|.. +.-..-+++..++.|+||.| T Consensus 106 G~a~GgG-~~la~~~D~ria~~~ak~~~~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~l~ltg~~~~a~eA~~~Glv~~v 184 (260) T 1sg4_A 106 GACPAGG-CLVALTCDYRILADNPRYCIGLNETQLGIIAPFWLKDTLENTIGHRAAERALQLGLLFPPAEALQVGIVDQV 184 (260) T ss_dssp EEBCHHH-HHHHTTSSEEEEECCTTCCBSCCGGGGTCCCCHHHHHHHHHHHCHHHHHHHHHHTCCBCHHHHHHHTSSSEE T ss_pred CCEECCC-CHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHCCCCEEE T ss_conf 7310563-111102332342222322111322344867881045557776089999999982898870677547840464 Q ss_pred ECHHHHHHHHHHHHHHHHCCC Q ss_conf 358999999999999972378 Q gi|254780820|r 263 VHRHDIPEVVSSLCKILTKSV 283 (284) Q Consensus 263 v~r~~l~~~i~~ll~il~~~~ 283 (284) |+..++.+....++.-+.+++ T Consensus 185 v~~~~l~~~a~~~a~~l~~~~ 205 (260) T 1sg4_A 185 VPEEQVQSTALSAIAQWMAIP 205 (260) T ss_dssp ECGGGHHHHHHHHHHHHHTSC T ss_pred CCHHHHHHHHHHHHHHHHCCC T ss_conf 886789999999999997599 No 57 >1wz8_A Enoyl-COA hydratase; lyase, crotonase, hexamer, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus HB8} SCOP: c.14.1.3 Probab=97.51 E-value=0.0041 Score=42.61 Aligned_cols=155 Identities=13% Similarity=0.115 Sum_probs=99.8 Q ss_pred EEEEEEECHHHCCCCCHHHHHHHHHHHHHHHHHC-CCEEEEECCC-----CCCCCC------CHHHHHH-HHHHHHHHHH Q ss_conf 9999983303185357789999999999998628-9689997688-----877652------1246777-7889999999 Q gi|254780820|r 122 LVAVVHEFSFIGGSIGIAAGEAIVKSCERAIAEK-CPLVMFTASG-----GARMQE------GILSLMQ-LPRTTIAINM 188 (284) Q Consensus 122 vvv~~~df~F~GGSmG~~~geki~~a~e~A~~~~-~PlI~~~~SG-----GaRMqE------G~~sL~q-Makt~~a~~~ 188 (284) |....++..- .-++....-+-+..+++.+..+. +-+|++...| |+.+.+ .--+..+ +......+.. T Consensus 21 V~~itlrp~~-~Nal~~~~~~el~~~l~~~~~d~~vr~vvl~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (264) T 1wz8_A 21 VLEITFRGEK-LNAMPPALHRGLARVWRDLEAVEGVRAVLLRGEGGVFSAGGSFGLIEEMRASHEALLRVFWEARDLVLG 99 (264) T ss_dssp EEEEEECCSG-GGCBCHHHHHHHHHHHHHHTTCTTCSEEEEEEGGGCCBCCBCHHHHHHHHHCHHHHHHHHHHHHHHHHH T ss_pred EEEEEECCCC-CCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 8999989998-788899999999999999866899869999789998438997520255433477888889999999999 Q ss_pred HHHCCCCEEEEECCCCCCEEEEEECCCCCEEEEECCCEEECCCHH--------------------HHHHH--HCCCCCCC Q ss_conf 986299889985676420111120146852555314211023278--------------------87876--36778872 Q gi|254780820|r 189 LKDAGLPYIVVLTNPTTGGVTASYAMLGDIHLAEPGAEIGFAGRR--------------------VIEQT--VREKLPDG 246 (284) Q Consensus 189 l~~~~lP~I~vl~~pt~GGv~AS~a~lgDiiiaep~a~igFaG~r--------------------Vi~~t--~~~~lp~~ 246 (284) +.....|+|+.+.++|.||= ..++...|+.|+.+++.+++..-+ ....- +++.+ T Consensus 100 i~~~~kPvIaav~G~a~GgG-~~lal~~D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l~ltg~~i--- 175 (264) T 1wz8_A 100 PLNFPRPVVAAVEKVAVGAG-LALALAADIAVVGKGTRLLDGHLRLGVAAGDHAVLLWPLLVGMAKAKYHLLLNEPL--- 175 (264) T ss_dssp HHHSSSCEEEEECSEEETHH-HHHHHHSSEEEEETTCEEECCHHHHTSCCTTTHHHHTHHHHCHHHHHHHHHHTCCE--- T ss_pred HHHCCCCEEEEECCCCCHHH-HHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC--- T ss_conf 99789989999748405288-89998644030115554325321117788842789999999888999999809962--- Q ss_pred CHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHCCC Q ss_conf 0215999968983537358999999999999972378 Q gi|254780820|r 247 FQRSEYLVEHGMIDRIVHRHDIPEVVSSLCKILTKSV 283 (284) Q Consensus 247 fqtae~l~~~G~iD~iv~r~~l~~~i~~ll~il~~~~ 283 (284) +++..++.|+||.|++..++.+....+.+-+.+++ T Consensus 176 --~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~ 210 (264) T 1wz8_A 176 --TGEEAERLGLVALAVEDEKVYEKALEVAERLAQGP 210 (264) T ss_dssp --EHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSC T ss_pred --CHHHHHHCCCCCEECCHHHHHHHHHHHHHHHHHCC T ss_conf --69999984996475287899899999999987228 No 58 >3moy_A Probable enoyl-COA hydratase; ssgcid, seattle structural genomics center for infectious DI enoyl COA, actinobacteria, lyase; 1.50A {Mycobacterium smegmatis} Probab=97.49 E-value=0.0016 Score=45.65 Aligned_cols=160 Identities=14% Similarity=0.136 Sum_probs=93.6 Q ss_pred EEEEEEECHHHCCCCCHHHHHHHHHHHHHHHHH-CCCEEEEECCCCCCCCCCHHH--------HHHHHHHHHHHHHHHHC Q ss_conf 999998330318535778999999999999862-896899976888776521246--------77778899999999862 Q gi|254780820|r 122 LVAVVHEFSFIGGSIGIAAGEAIVKSCERAIAE-KCPLVMFTASGGARMQEGILS--------LMQLPRTTIAINMLKDA 192 (284) Q Consensus 122 vvv~~~df~F~GGSmG~~~geki~~a~e~A~~~-~~PlI~~~~SGGaRMqEG~~s--------L~qMakt~~a~~~l~~~ 192 (284) |...-+|--=---+++...-+-+..+++.+.++ .+-+|++...|..=--.+-.. -.........+..+..- T Consensus 20 i~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~f~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (263) T 3moy_A 20 VGLIRLDRPDALNALNQTLEAEVLDAARDFDADLEIGAIVVTGSERAFAAGADIAEMVTLTPHQARERNLLSGWDSLTQV 99 (263) T ss_dssp EEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECCSSEEEESBCHHHHTTCCHHHHHHTTTTHHHHHHTTC T ss_pred EEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCHHHHCCCCCCHHHHHCCCCCHHHHHCC T ss_conf 89999848987789899999999999998732898169998678545416763354203563102220121002343049 Q ss_pred CCCEEEEECCCCCCEEEEEECCCCCEEEEECCCEEECCCH-----------HHHHHHHCCCC------CCCCHHHHHHHH Q ss_conf 9988998567642011112014685255531421102327-----------88787636778------872021599996 Q gi|254780820|r 193 GLPYIVVLTNPTTGGVTASYAMLGDIHLAEPGAEIGFAGR-----------RVIEQTVREKL------PDGFQRSEYLVE 255 (284) Q Consensus 193 ~lP~I~vl~~pt~GGv~AS~a~lgDiiiaep~a~igFaG~-----------rVi~~t~~~~l------p~~fqtae~l~~ 255 (284) ..|.|+.+.++|.||- +.+++..|+.|+.+++.++|.-- ....+.+|... --.--+++..++ T Consensus 100 ~kPvIa~i~G~a~GgG-~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~l~g~~~~a~eA~~ 178 (263) T 3moy_A 100 RKPIVAAVAGYALGGG-CELAMLCDLVIAADTARFGQPEITLGILPGLGGTQRLTRAVGKAKAMDLCLTGRSLTAEEAER 178 (263) T ss_dssp CSCEEEEECBEEETHH-HHHHHHSSEEEEETTCEEECGGGGGTCCCSSSTTTHHHHHHCHHHHHHHHHHCCEEEHHHHHH T ss_pred CCCEEEEECCCCHHHH-HHHHHHCCEEEEECCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH T ss_conf 9979999886153999-999997899998299899896418065855028999999852999999998299788999998 Q ss_pred CCCCCEEECHHHHHHHHHHHHHHHHCC Q ss_conf 898353735899999999999997237 Q gi|254780820|r 256 HGMIDRIVHRHDIPEVVSSLCKILTKS 282 (284) Q Consensus 256 ~G~iD~iv~r~~l~~~i~~ll~il~~~ 282 (284) .|+||.||+..++.+....+..-+.++ T Consensus 179 ~Glv~~vv~~~el~~~a~~~a~~l~~~ 205 (263) T 3moy_A 179 VGLVSRIVPAADLLDEALAVAQRIARM 205 (263) T ss_dssp TTSCSEEECGGGHHHHHHHHHHHHHHS T ss_pred CCCCEEEECCCHHHHHHHHHHHHHHHC T ss_conf 799679504200058999999999846 No 59 >3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center for infectious disease, S coenzyme A, tuberculosis; 2.05A {Mycobacterium avium} Probab=97.49 E-value=0.0034 Score=43.23 Aligned_cols=159 Identities=14% Similarity=0.152 Sum_probs=98.9 Q ss_pred EEEEEEECHHHCCCCCHHHHHHHHHHHHHHHHH-CCCEEEEECCCCCCCCCCHH-----HHHHHHHHHHHHHHHHHCCCC Q ss_conf 999998330318535778999999999999862-89689997688877652124-----677778899999999862998 Q gi|254780820|r 122 LVAVVHEFSFIGGSIGIAAGEAIVKSCERAIAE-KCPLVMFTASGGARMQEGIL-----SLMQLPRTTIAINMLKDAGLP 195 (284) Q Consensus 122 vvv~~~df~F~GGSmG~~~geki~~a~e~A~~~-~~PlI~~~~SGGaRMqEG~~-----sL~qMakt~~a~~~l~~~~lP 195 (284) |....+|-.=-.-++....-+.+..+++.+.++ .+.+|++...|. .---|.. .............++..-..| T Consensus 16 v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~-~f~~g~~~~~~~~~~~~~~~~~~~~~l~~~~kP 94 (255) T 3p5m_A 16 VLRIRLDRPEKLNAVDTPMLEELSVHIRDAEADESVRAVLLTGAGR-AFCSGGDLTGGDTAGAADAANRVVRAITSLPKP 94 (255) T ss_dssp EEEEEECCGGGTTEECHHHHHHHHHHHHHHHHCTTCCEEEEEESSS-CSBCEECC---CHHHHHHHHHHHHHHHHHCSSC T ss_pred EEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCC-CCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCC T ss_conf 9999975888678989999999999999997499927999966676-533577430122234312577999999819998 Q ss_pred EEEEECCCCCCEEEEEECCCCCEEEEECCCEEECC-----------CHHHHHHHHCCC------CCCCCHHHHHHHHCCC Q ss_conf 89985676420111120146852555314211023-----------278878763677------8872021599996898 Q gi|254780820|r 196 YIVVLTNPTTGGVTASYAMLGDIHLAEPGAEIGFA-----------GRRVIEQTVREK------LPDGFQRSEYLVEHGM 258 (284) Q Consensus 196 ~I~vl~~pt~GGv~AS~a~lgDiiiaep~a~igFa-----------G~rVi~~t~~~~------lp~~fqtae~l~~~G~ 258 (284) +|+.+.++|.||- +.+++..|+.|+.+.|.++|. |.....+.++.. +.-.--+++..++.|+ T Consensus 95 vIaav~G~a~GgG-~~lal~~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a~~~~l~g~~~~a~ea~~~Gl 173 (255) T 3p5m_A 95 VIAGVHGAAVGFG-CSLALACDLVVAAPASYFQLAFTRVGLMPDGGASALLPLLIGRARTSRMAMTAEKISAATAFEWGM 173 (255) T ss_dssp EEEEECSEEETHH-HHHHHHSSEEEECTTCEEECGGGGGTCCCCTTHHHHTHHHHCHHHHHHHHHHCCCEEHHHHHHTTS T ss_pred EEEEECCEEEEHH-HHHHHHCCEEEECCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCHHHHHHCCC T ss_conf 9999789887377-899873788997899889677204064655576324554454310021111378788999987699 Q ss_pred CCEEECHHHHHHHHHHHHHHHHCC Q ss_conf 353735899999999999997237 Q gi|254780820|r 259 IDRIVHRHDIPEVVSSLCKILTKS 282 (284) Q Consensus 259 iD~iv~r~~l~~~i~~ll~il~~~ 282 (284) +|.||+..++.+....+.+-+.++ T Consensus 174 v~~vv~~~~l~~~a~~~a~~ia~~ 197 (255) T 3p5m_A 174 ISHITSADEYESVLTDVLRSVSGG 197 (255) T ss_dssp CSEECCTTCHHHHHHHHHHHHHTS T ss_pred CCEEECHHHHHHHHHHHHHHHHCC T ss_conf 348818279999999999999669 No 60 >1szo_A 6-oxocamphor hydrolase; enzyme-product complex; HET: CAX; 1.90A {Rhodococcus SP} SCOP: c.14.1.3 PDB: 1o8u_A Probab=97.47 E-value=0.01 Score=39.63 Aligned_cols=161 Identities=12% Similarity=0.122 Sum_probs=102.0 Q ss_pred EEEEEEEECHHHCCCCCHHHHHHHHHHHHHHHH-HCCCEEEEECCCC-----CCCCCC----HHHHHHH-HHHHHHHHHH Q ss_conf 499999833031853577899999999999986-2896899976888-----776521----2467777-8899999999 Q gi|254780820|r 121 KLVAVVHEFSFIGGSIGIAAGEAIVKSCERAIA-EKCPLVMFTASGG-----ARMQEG----ILSLMQL-PRTTIAINML 189 (284) Q Consensus 121 ~vvv~~~df~F~GGSmG~~~geki~~a~e~A~~-~~~PlI~~~~SGG-----aRMqEG----~~sL~qM-akt~~a~~~l 189 (284) .|.+..+|--=-.-++....-+.+..+++.+.. ..+-+|++...|+ +.+.|- ......+ ......+.++ T Consensus 25 ~v~~i~ln~p~~~Nal~~~~~~el~~~l~~~~~d~~v~~vvltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l 104 (257) T 1szo_A 25 GVLLVTVHTEGKSLVWTSTAHDELAYCFHDIACDRENKVVILTGTGPSFCNEIDFTSFNLGTPHDWDEIIFEGQRLLNNL 104 (257) T ss_dssp TEEEEEECBTTBSCEECHHHHHHHHHHHHHHHHCTTCCEEEEECBTTBSBCEECGGGSCCSSHHHHHHHHHHHHHHHHHH T ss_pred CEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH T ss_conf 99999978987567999999999999999997499954999966887621576443323444114778899999999998 Q ss_pred HHCCCCEEEEECCCCCCEEEEEECCCCCEEEEECCCEE-EC-------C----CHHHHHHHHCCC------CCCCCHHHH Q ss_conf 86299889985676420111120146852555314211-02-------3----278878763677------887202159 Q gi|254780820|r 190 KDAGLPYIVVLTNPTTGGVTASYAMLGDIHLAEPGAEI-GF-------A----GRRVIEQTVREK------LPDGFQRSE 251 (284) Q Consensus 190 ~~~~lP~I~vl~~pt~GGv~AS~a~lgDiiiaep~a~i-gF-------a----G~rVi~~t~~~~------lp~~fqtae 251 (284) ..-..|+|+++.+.+.||. ..+...|+.|+.+++.. ++ . |.....+.+|.. +--.--+++ T Consensus 105 ~~~~kpvIa~v~g~~~GG~--~lal~~D~ria~~~a~f~~~pe~~~g~~p~~g~~~~l~r~ig~~~a~~l~l~g~~~~a~ 182 (257) T 1szo_A 105 LSIEVPVIAAVNGPVTNAP--EIPVMSDIVLAAESATFQDGPHFPSGIVPGDGAHVVWPHVLGSNRGRYFLLTGQELDAR 182 (257) T ss_dssp HHCCSCEEEEECSCBCSST--HHHHTSSEEEEETTCEEECTTSGGGTCCCTTTHHHHHHHHHCHHHHHHHHHTTCEEEHH T ss_pred HCCCCCEEEEEECCCCEEE--EEECCCCEEEECCCCEEECCCCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHCCCCCCHH T ss_conf 7089718999713555057--75057764898588867537732446477654211107760899999898639816399 Q ss_pred HHHHCCCCCEEECHHHHHHHHHHHHHHHHCCC Q ss_conf 99968983537358999999999999972378 Q gi|254780820|r 252 YLVEHGMIDRIVHRHDIPEVVSSLCKILTKSV 283 (284) Q Consensus 252 ~l~~~G~iD~iv~r~~l~~~i~~ll~il~~~~ 283 (284) ..++.|+||.||+..++.+..-.+..-+.+++ T Consensus 183 eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~ 214 (257) T 1szo_A 183 TALDYGAVNEVLSEQELLPRAWELARGIAEKP 214 (257) T ss_dssp HHHHHTSCSEEECHHHHHHHHHHHHHHHHTSC T ss_pred HHHHCCCCCEEECHHHHHHHHHHHHHHHHCCC T ss_conf 99856998877676899999999999998489 No 61 >3bpt_A 3-hydroxyisobutyryl-COA hydrolase; coenzyme A, beta-hydroxyisobutyryl acid, quercetin, structural genomics consortium, SGC, alternative splicing; HET: QUE; 1.50A {Homo sapiens} Probab=97.44 E-value=0.011 Score=39.35 Aligned_cols=153 Identities=12% Similarity=0.155 Sum_probs=95.4 Q ss_pred ECEEEEEEEEECHHHCCCCCHHHHHHHHHHHHHHHHH-CCCEEEEECCC------CCCCCCC-------HHHHHHHHH-H Q ss_conf 0414999998330318535778999999999999862-89689997688------8776521-------246777788-9 Q gi|254780820|r 118 RDFKLVAVVHEFSFIGGSIGIAAGEAIVKSCERAIAE-KCPLVMFTASG------GARMQEG-------ILSLMQLPR-T 182 (284) Q Consensus 118 ~G~~vvv~~~df~F~GGSmG~~~geki~~a~e~A~~~-~~PlI~~~~SG------GaRMqEG-------~~sL~qMak-t 182 (284) .| .|.+.-+|--=-.-++....-+.+..+++.+... .+-+|++..+| |+.+.+- .-...++.+ . T Consensus 13 ~g-~v~~itlnrP~~~Nal~~~m~~eL~~~l~~~~~d~~v~~vvltga~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~ 91 (363) T 3bpt_A 13 KG-CTGVITLNRPKFLNALTLNMIRQIYPQLKKWEQDPETFLIIIKGAGGKAFCAGGDIRVISEAEKAKQKIAPVFFREE 91 (363) T ss_dssp ET-TEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEETTSSEEECCBCHHHHHHHHTSSCCCHHHHHHHH T ss_pred EC-CEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCEECCCCHHHHHHCCCCCCHHHHHHHHHH T ss_conf 89-99999976888668999999999999999998499976999966899821178167877412233210036777677 Q ss_pred HHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCCEEEEECCCEEECCC---------------HHHHHH------HHCC Q ss_conf 9999999862998899856764201111201468525553142110232---------------788787------6367 Q gi|254780820|r 183 TIAINMLKDAGLPYIVVLTNPTTGGVTASYAMLGDIHLAEPGAEIGFAG---------------RRVIEQ------TVRE 241 (284) Q Consensus 183 ~~a~~~l~~~~lP~I~vl~~pt~GGv~AS~a~lgDiiiaep~a~igFaG---------------~rVi~~------t~~~ 241 (284) ...+..+..-..|+|+.+.++|.||- ..++..+|+.||.+.+.+++.- ||++.+ .+|+ T Consensus 92 ~~~~~~i~~~~kPvIaav~G~a~GgG-~~la~~~D~~ia~~~a~f~~pe~~~Gl~P~~g~~~~l~rl~g~~a~~l~ltg~ 170 (363) T 3bpt_A 92 YMLNNAVGSCQKPYVALIHGITMGGG-VGLSVHGQFRVATEKCLFAMPETAIGLFPDVGGGYFLPRLQGKLGYFLALTGF 170 (363) T ss_dssp HHHHHHHHTCSSCEEEEECSEEETHH-HHTTTTSSEEEECTTCEEECCGGGTTSCCCTTHHHHHHHSSTTHHHHHHHHCC T ss_pred HHHHHHHHHCCCCEEEECCCCEEECC-HHHHCCCEEEECCCCCEEECCHHCCCCCCCCCCEEEECCHHHHHHHHHHHHCC T ss_conf 68999999689989980699473512-55520331310389748924132214688876023421033699999998489 Q ss_pred CCCCCCHHHHHHHHCCCCCEEECHHHHHHHHHHHHH Q ss_conf 788720215999968983537358999999999999 Q gi|254780820|r 242 KLPDGFQRSEYLVEHGMIDRIVHRHDIPEVVSSLCK 277 (284) Q Consensus 242 ~lp~~fqtae~l~~~G~iD~iv~r~~l~~~i~~ll~ 277 (284) .+ +|+-.++.|++|.+|+..++......++. T Consensus 171 ~~-----~a~eA~~~Glv~~vv~~e~l~~~~~~l~a 201 (363) T 3bpt_A 171 RL-----KGRDVYRAGIATHFVDSEKLAMLEEDLLA 201 (363) T ss_dssp CE-----ETHHHHHTTSCSEECCGGGHHHHHHHHHH T ss_pred CC-----HHHHHHHCCCCEEECCHHHHHHHHHHHHH T ss_conf 74-----39999985997086385389999999986 No 62 >1hzd_A AUH, AU-binding protein/enoyl-COA hydratase; RNA-binding protein,enoyl-COA hydratase, riken structural genomics/proteomics initiative, RSGI; 2.20A {Homo sapiens} SCOP: c.14.1.3 PDB: 2zqq_A 2zqr_A Probab=97.39 E-value=0.0064 Score=41.21 Aligned_cols=146 Identities=15% Similarity=0.218 Sum_probs=88.5 Q ss_pred EEEEEEECHHHCCCCCHHHHHHHHHHHHHHHHH-CCCEEEEECCC------CCCCCCC-----HHHHHHHHHHHHHHHHH Q ss_conf 999998330318535778999999999999862-89689997688------8776521-----24677778899999999 Q gi|254780820|r 122 LVAVVHEFSFIGGSIGIAAGEAIVKSCERAIAE-KCPLVMFTASG------GARMQEG-----ILSLMQLPRTTIAINML 189 (284) Q Consensus 122 vvv~~~df~F~GGSmG~~~geki~~a~e~A~~~-~~PlI~~~~SG------GaRMqEG-----~~sL~qMakt~~a~~~l 189 (284) |+...+|--=-.-+|+...-+-+..+++.+.++ .+-+|++...| |.-+.+- .-....+.+....+..+ T Consensus 22 v~~itlnrP~~~Nal~~~~~~el~~~l~~~~~d~~~~~vVl~g~g~~~F~~G~d~~~~~~~~~~~~~~~~~~~~~~~~~i 101 (272) T 1hzd_A 22 IVVLGINRAYGKNSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERAKMSSSEVGPFVSKIRAVINDI 101 (272) T ss_dssp EEEEEECCGGGTTCBCTTHHHHHHHHHHHHHHCSSCSEEEEEESBTEEEECCBCHHHHTTSCHHHHHHHHHHHHHHHHHH T ss_pred EEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHH T ss_conf 89999779987799999999999999999985999649999627887113551000110012034456677899999999 Q ss_pred HHCCCCEEEEECCCCCCEEEEEECCCCCEEEEECCCEEECCC-----------HHHHHHHHCCCC------CCCCHHHHH Q ss_conf 862998899856764201111201468525553142110232-----------788787636778------872021599 Q gi|254780820|r 190 KDAGLPYIVVLTNPTTGGVTASYAMLGDIHLAEPGAEIGFAG-----------RRVIEQTVREKL------PDGFQRSEY 252 (284) Q Consensus 190 ~~~~lP~I~vl~~pt~GGv~AS~a~lgDiiiaep~a~igFaG-----------~rVi~~t~~~~l------p~~fqtae~ 252 (284) .+...|.|+.+.+.|.||- ..++...|+.|+.+++.++|.- .......+|... --.--+|+. T Consensus 102 ~~~~kpvIaav~G~a~GgG-~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a~~lll~g~~i~a~e 180 (272) T 1hzd_A 102 ANLPVPTIAAIDGLALGGG-LELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSARVLDGKE 180 (272) T ss_dssp HTCSSCEEEEESEEEETHH-HHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHTCEEEHHH T ss_pred HHCCCCEEEEECCEECCCC-CEEECCCCHHHHCCCCEEECCCCCEEECCCCCCCEEECHHHHHHHHHHHHHCCCCCCHHH T ss_conf 9789989999788033577-511003032230689889775426513675244104303443999987861288468999 Q ss_pred HHHCCCCCEEECHHHH Q ss_conf 9968983537358999 Q gi|254780820|r 253 LVEHGMIDRIVHRHDI 268 (284) Q Consensus 253 l~~~G~iD~iv~r~~l 268 (284) .++.|+||.||+..++ T Consensus 181 A~~~Glv~~vv~~~~~ 196 (272) T 1hzd_A 181 AKAVGLISHVLEQNQE 196 (272) T ss_dssp HHHHTSCSEEECCCTT T ss_pred HHHCCCEEEEECCCHH T ss_conf 9757972698486333 No 63 >3gkb_A Putative enoyl-COA hydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.80A {Streptomyces avermitilis} Probab=97.39 E-value=0.011 Score=39.56 Aligned_cols=154 Identities=16% Similarity=0.236 Sum_probs=94.3 Q ss_pred EECHHHCCCCCHHHHHHHHHHHHHHHHH-CCCEEEEECC------CCCCCCCCH--HHHHHHH--------HHHHHHHHH Q ss_conf 8330318535778999999999999862-8968999768------887765212--4677778--------899999999 Q gi|254780820|r 127 HEFSFIGGSIGIAAGEAIVKSCERAIAE-KCPLVMFTAS------GGARMQEGI--LSLMQLP--------RTTIAINML 189 (284) Q Consensus 127 ~df~F~GGSmG~~~geki~~a~e~A~~~-~~PlI~~~~S------GGaRMqEG~--~sL~qMa--------kt~~a~~~l 189 (284) .... . -+++...-+-+..+++.+.++ .+-+|++..+ ||+-+.+.. .+..... .....+..+ T Consensus 25 nrP~-~-Nal~~~~~~~L~~al~~~~~d~~vr~vVl~g~g~~ffs~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 102 (287) T 3gkb_A 25 DNPP-V-NVIGATMMRELRTVLTTLADDSSVRVIVFSSADPEFFLAHVDMRIGEKMDALQELAASAPADVNVFQAVGELI 102 (287) T ss_dssp CCTT-T-TCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESSSSEEECCBCTTGGGSHHHHHHHHHTSCTTCCTTHHHHHHH T ss_pred CCCC-C-CCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH T ss_conf 8898-5-8899999999999999998689945999967898855003278876520010333321077889999999999 Q ss_pred HHCCCCEEEEECCCCCCEEEEEECCCCCEEEEE-CCCEEECC-----------CHHHHHHHHCCCC------CCCCHHHH Q ss_conf 862998899856764201111201468525553-14211023-----------2788787636778------87202159 Q gi|254780820|r 190 KDAGLPYIVVLTNPTTGGVTASYAMLGDIHLAE-PGAEIGFA-----------GRRVIEQTVREKL------PDGFQRSE 251 (284) Q Consensus 190 ~~~~lP~I~vl~~pt~GGv~AS~a~lgDiiiae-p~a~igFa-----------G~rVi~~t~~~~l------p~~fqtae 251 (284) .....|+|+.+.++|.||- ..++...|++|+. ..|.+++. |.....+.+|... --.--+|+ T Consensus 103 ~~~pkPvIaav~G~a~GgG-~~lalacD~ria~~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~llltg~~~~a~ 181 (287) T 3gkb_A 103 RHQPQVTIVKLAGKARGGG-AEFVAAADMAFAAAETAGLGQIEALMGIIPGGGGTQYLRGRVGRNRALEVVLTADLFDAE 181 (287) T ss_dssp HHCSSEEEEEECSEEETHH-HHHHHHSSEEEEETTTCEEECGGGGGTSCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHH T ss_pred HHCCCCEEEEECCCEEEEC-CHHCCCCCCCCCCHHHHCCCCCEEEECCCCCHHHHHHHHHHCCHHHHHHHHHCCCCCCHH T ss_conf 8399988999579478605-112104663432101001357411346588646899999971888899998658844689 Q ss_pred HHHHCCCCCEEECHHHHHHHHHHHHHHHHCCC Q ss_conf 99968983537358999999999999972378 Q gi|254780820|r 252 YLVEHGMIDRIVHRHDIPEVVSSLCKILTKSV 283 (284) Q Consensus 252 ~l~~~G~iD~iv~r~~l~~~i~~ll~il~~~~ 283 (284) ..++.|+||.||+..++.+....+..-+.+++ T Consensus 182 eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~ 213 (287) T 3gkb_A 182 TAASYGWINRALPADELDEYVDRVARNIAALP 213 (287) T ss_dssp HHHHHTSSSEEECHHHHHHHHHHHHHHHHTSC T ss_pred HHHHCCCCEEEECHHHHHHHHHHHHHHHHCCC T ss_conf 99985990498387899999999999998599 No 64 >3p85_A Enoyl-COA hydratase; ssgcid, mycobacerium avium, structural seattle structural genomics center for infectious disease,; HET: 1PE; 1.90A {Mycobacterium avium} Probab=97.38 E-value=0.00095 Score=47.32 Aligned_cols=160 Identities=13% Similarity=0.114 Sum_probs=94.8 Q ss_pred EEEEEEECHHHCCCCCHHHHHHHHHHHHHHHH-HCCCEEEEECCCCCCCCCCHHH-HHHHHHHHHHHHHHHHCCCCEEEE Q ss_conf 99999833031853577899999999999986-2896899976888776521246-777788999999998629988998 Q gi|254780820|r 122 LVAVVHEFSFIGGSIGIAAGEAIVKSCERAIA-EKCPLVMFTASGGARMQEGILS-LMQLPRTTIAINMLKDAGLPYIVV 199 (284) Q Consensus 122 vvv~~~df~F~GGSmG~~~geki~~a~e~A~~-~~~PlI~~~~SGGaRMqEG~~s-L~qMakt~~a~~~l~~~~lP~I~v 199 (284) |+...+|--=-.-+++...-+.+..+++.+.. ..+-+|++...|+.=-..+-+. +.+.........++..-..|+|+. T Consensus 35 Va~ItlnrP~~~Nal~~~~~~el~~al~~~~~d~~vr~vvltg~g~~F~aG~dl~~~~~~~~~~~~~~~~~~~~kPvIaa 114 (270) T 3p85_A 35 VRTLTLNRPQARNALSAALRDRFFGALADAETDDDVDVVIITGADPVFCAGLDLKELGGSSALPDISPRWPALTKPVIGA 114 (270) T ss_dssp EEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCSEEEEEESTTCSBCCBCTTTC------CCCCCCCCCCSSCEEEE T ss_pred EEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCHHHHCCCHHHHHHHHHHHHCCCCEEEE T ss_conf 99999658887799899999999999999975989169999799867246751454122113456899998689999999 Q ss_pred ECCCCCCEEEEEECCCCCEEEEECCCEEECCCHHH-----------HHHHHCCC------CCCCCHHHHHHHHCCCCCEE Q ss_conf 56764201111201468525553142110232788-----------78763677------88720215999968983537 Q gi|254780820|r 200 LTNPTTGGVTASYAMLGDIHLAEPGAEIGFAGRRV-----------IEQTVREK------LPDGFQRSEYLVEHGMIDRI 262 (284) Q Consensus 200 l~~pt~GGv~AS~a~lgDiiiaep~a~igFaG~rV-----------i~~t~~~~------lp~~fqtae~l~~~G~iD~i 262 (284) +.++|.||-. ..++..|+.|+.+++.+++..-++ ....++.. |--..-+++..++.|+||.| T Consensus 115 v~G~a~GgG~-~lal~~D~ria~~~a~f~~pe~~lGl~p~~g~~~~l~~~ig~~~a~~llltg~~~~a~eA~~~Glv~~v 193 (270) T 3p85_A 115 INGAAVTGGL-ELALYCDILIASENARFADTHARVGLLPTWGLSVRLPQKVGIGLARRMSLTGDYLSAADALRAGLVTEV 193 (270) T ss_dssp ECSEEETHHH-HHHHHSSEEEEETTCEEECCTTTTTCCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSCSEE T ss_pred ECCEEEHHHH-HHHHHCCEEEECCCCEEECHHHHHCCCCCCCCCEEEEECCCCCHHHCCCCCCCCCCHHHHHHCCCEEEE T ss_conf 8897550779-998626758966887798856751877665753232001232021111003785878999877991297 Q ss_pred ECHHHHHHHHHHHHHHHHCC Q ss_conf 35899999999999997237 Q gi|254780820|r 263 VHRHDIPEVVSSLCKILTKS 282 (284) Q Consensus 263 v~r~~l~~~i~~ll~il~~~ 282 (284) |+..++.+....+..-|.++ T Consensus 194 v~~~~l~~~a~~~a~~la~~ 213 (270) T 3p85_A 194 VPHDQLLGAARAVAASIVGN 213 (270) T ss_dssp ECGGGHHHHHHHHHHHHHTS T ss_pred ECHHHHHHHHHHHHHHHHCC T ss_conf 18789999999999999857 No 65 >3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase, PSI-2, protein structure initiative; 1.50A {Streptomyces avermitilis} Probab=97.37 E-value=0.0063 Score=41.21 Aligned_cols=164 Identities=12% Similarity=0.117 Sum_probs=99.6 Q ss_pred EECEEEEEEEEECHHHCCCCCHHHHHHHHHHHHHHHHHC-CCEEEEECCC------CCCCCCCHH---H-----HHHHHH Q ss_conf 704149999983303185357789999999999998628-9689997688------877652124---6-----777788 Q gi|254780820|r 117 VRDFKLVAVVHEFSFIGGSIGIAAGEAIVKSCERAIAEK-CPLVMFTASG------GARMQEGIL---S-----LMQLPR 181 (284) Q Consensus 117 I~G~~vvv~~~df~F~GGSmG~~~geki~~a~e~A~~~~-~PlI~~~~SG------GaRMqEG~~---s-----L~qMak 181 (284) ++| .|....+|--=+ -+++...-+.+..+++.+.++. +-+|++..+| |+.+.|-.- . ...... T Consensus 14 ~~~-~Va~itlnrp~~-Nal~~~m~~eL~~al~~~~~d~~v~vvVl~g~g~~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~ 91 (289) T 3h0u_A 14 LDG-TVLSATFNAPPM-NLIGPEVVRDLVALLEELAHPTAPRVVIFDSADADFFFPHVDMTKVPEYTAEAAKAGGPGDAS 91 (289) T ss_dssp EET-TEEEEEECCTTT-CCBCHHHHHHHHHHHHHTTSTTSCSEEEEEECSSSEEECSBCTTCHHHHHHHHHTTSSTTCCS T ss_pred EEC-CEEEEEECCCCC-CCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHH T ss_conf 989-999999578986-889999999999999998539895699992789980114015454443201013433456789 Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCCEEEEE-CCCEEECC-----------CHHHHHHHHCCCC------ Q ss_conf 99999999862998899856764201111201468525553-14211023-----------2788787636778------ Q gi|254780820|r 182 TTIAINMLKDAGLPYIVVLTNPTTGGVTASYAMLGDIHLAE-PGAEIGFA-----------GRRVIEQTVREKL------ 243 (284) Q Consensus 182 t~~a~~~l~~~~lP~I~vl~~pt~GGv~AS~a~lgDiiiae-p~a~igFa-----------G~rVi~~t~~~~l------ 243 (284) ....+.++..-..|+|+.+.++|.||-. .++...|+.|+. .++.+++. |-......+|... T Consensus 92 ~~~l~~~l~~~~kPvIaav~G~a~GgG~-~lal~cD~~iaa~e~a~f~~pe~~~Gl~p~~g~~~~l~r~iG~~~a~~lll 170 (289) T 3h0u_A 92 LGMLFRKLSQLPAVTIAKLRGRARGAGS-EFLLACDMRFASRENAILGQPEVGIGAPPGAGAIQHLTRLLGRGRALEAVL 170 (289) T ss_dssp HHHHHHHHHTCSSEEEEEECSEEETHHH-HHHHHSSEEEEETTTCEEECTHHHHTSCCCSSHHHHHHHHHCHHHHHHHHH T ss_pred HHHHHHHHHHCCCCEEEECCCCCCCCHH-HHHHHCCEEEECCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH T ss_conf 9999999996899899805995246303-787717713563588615366446525888642577776510999999998 Q ss_pred CCCCHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHCCC Q ss_conf 8720215999968983537358999999999999972378 Q gi|254780820|r 244 PDGFQRSEYLVEHGMIDRIVHRHDIPEVVSSLCKILTKSV 283 (284) Q Consensus 244 p~~fqtae~l~~~G~iD~iv~r~~l~~~i~~ll~il~~~~ 283 (284) --.--+|+..++.|+||.||+..++.+....+.+-|.+.+ T Consensus 171 tg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~ 210 (289) T 3h0u_A 171 TSSDFDADLAERYGWVNRAVPDAELDEFVAGIAARMSGFP 210 (289) T ss_dssp HCCCEEHHHHHHHTSSSEEECHHHHHHHHHHHHHHHHTSC T ss_pred CCCCCCHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHCCC T ss_conf 3994769999987997187188799999999999998679 No 66 >1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET: BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB: 1jxz_A* 1nzy_B* Probab=97.34 E-value=0.015 Score=38.54 Aligned_cols=161 Identities=14% Similarity=0.202 Sum_probs=99.0 Q ss_pred EEEEEEECHHHCCCCCHHHHHHHHHHHHHHHHH-CCCEEEEECCC-----CCCCCCCH---HH---HHHHHHH----HHH Q ss_conf 999998330318535778999999999999862-89689997688-----87765212---46---7777889----999 Q gi|254780820|r 122 LVAVVHEFSFIGGSIGIAAGEAIVKSCERAIAE-KCPLVMFTASG-----GARMQEGI---LS---LMQLPRT----TIA 185 (284) Q Consensus 122 vvv~~~df~F~GGSmG~~~geki~~a~e~A~~~-~~PlI~~~~SG-----GaRMqEG~---~s---L~qMakt----~~a 185 (284) |+...+|--=-.-+++...-+.+..+++.+.++ .+-+|+++..| |+.+.|-. .. ....... ... T Consensus 13 Va~itlnrp~~~Nal~~~~~~el~~~l~~~~~d~~v~vvvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (269) T 1nzy_A 13 VAEITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAEDAFCAGFYLREIPLDKGVAGVRDHFRIAALWWHQM 92 (269) T ss_dssp EEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCGGGSCSSSHHHHHHHHHHHHHHHHHHH T ss_pred EEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHH T ss_conf 99999748987789899999999999999985889169999799986357864887641345431156788888889999 Q ss_pred HHHHHHCCCCEEEEECCCCCCEEEEEECCCCCEEEEECCCEEECCCHHH-----------HHHHHCCC------CCCCCH Q ss_conf 9999862998899856764201111201468525553142110232788-----------78763677------887202 Q gi|254780820|r 186 INMLKDAGLPYIVVLTNPTTGGVTASYAMLGDIHLAEPGAEIGFAGRRV-----------IEQTVREK------LPDGFQ 248 (284) Q Consensus 186 ~~~l~~~~lP~I~vl~~pt~GGv~AS~a~lgDiiiaep~a~igFaG~rV-----------i~~t~~~~------lp~~fq 248 (284) +.++.....|.|+.+.++|.||= ..+++..|+.|+.+++.+++.-.++ ..+.+|.. |--.-- T Consensus 93 ~~~i~~~~kp~Iaav~G~a~GgG-~~lal~~D~ria~~~a~f~~~~~~~g~~p~~g~~~~l~~~iG~~~a~~l~ltg~~~ 171 (269) T 1nzy_A 93 IHKIIRVKRPVLAAINGVAAGGG-LGISLASDMAICADSAKFVCAWHTIGIGNDTATSYSLARIVGMRRAMELMLTNRTL 171 (269) T ss_dssp HHHHHHCSSCEEEEECSEEETHH-HHHHHHSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHHHHHHHHHHHHCCCB T ss_pred HHHHHHCCCCEEEEEHHHHCCCC-HHHHHCCCHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHCCHHHHHCCCCCCCCC T ss_conf 99999689999997330205640-56554121445645301147654262157823899999980946531202348988 Q ss_pred HHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHCCC Q ss_conf 15999968983537358999999999999972378 Q gi|254780820|r 249 RSEYLVEHGMIDRIVHRHDIPEVVSSLCKILTKSV 283 (284) Q Consensus 249 tae~l~~~G~iD~iv~r~~l~~~i~~ll~il~~~~ 283 (284) +|+..++.|+||.||+..++.+....+.+-+.+++ T Consensus 172 ~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~ 206 (269) T 1nzy_A 172 YPEEAKDWGLVSRVYPKDEFREVAWKVARELAAAP 206 (269) T ss_dssp CHHHHHHHTSCSCEECHHHHHHHHHHHHHHHHHSC T ss_pred CHHHHHHHCCCCEECCHHHHHHHHHHHHHHHHCCC T ss_conf 79999980998875486899999999999998589 No 67 >1mj3_A Enoyl-COA hydratase, mitochondrial; homohexamer, lyase; HET: HXC; 2.10A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2dub_A* 1dub_A* 1ey3_A* 2hw5_A* Probab=97.33 E-value=0.0023 Score=44.43 Aligned_cols=155 Identities=12% Similarity=0.110 Sum_probs=92.6 Q ss_pred EEEEEEECHHHCCCCCHHHHHHHHHHHHHHHHH-CCCEEEEECCCCC-----CCCCCH---HHHHHHHHHHHHHHHHHHC Q ss_conf 999998330318535778999999999999862-8968999768887-----765212---4677778899999999862 Q gi|254780820|r 122 LVAVVHEFSFIGGSIGIAAGEAIVKSCERAIAE-KCPLVMFTASGGA-----RMQEGI---LSLMQLPRTTIAINMLKDA 192 (284) Q Consensus 122 vvv~~~df~F~GGSmG~~~geki~~a~e~A~~~-~~PlI~~~~SGGa-----RMqEG~---~sL~qMakt~~a~~~l~~~ 192 (284) |.+.-+|--=-.-+++...-+.+..+++.+.+. .+-+|+++.+|+. .+.+-. ..-....+....+..+... T Consensus 17 Va~ItlnrP~~~Nals~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (260) T 1mj3_A 17 VGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEKAFAAGADIKEMQNRTFQDCYSGKFLSHWDHITRI 96 (260) T ss_dssp EEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECCSSEEECCBCHHHHTTCCHHHHHHC--CCGGGGGGGC T ss_pred EEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCEECCCCHHHHCCCCHHHHHHHHHHHHHHHHHCC T ss_conf 89999808886789999999999999999985899079999779995327876565323531456788999999885259 Q ss_pred CCCEEEEECCCCCCEEEEEECCCCCEEEEECCCEEECCCHH-----------HHHHH-----------HCCCCCCCCHHH Q ss_conf 99889985676420111120146852555314211023278-----------87876-----------367788720215 Q gi|254780820|r 193 GLPYIVVLTNPTTGGVTASYAMLGDIHLAEPGAEIGFAGRR-----------VIEQT-----------VREKLPDGFQRS 250 (284) Q Consensus 193 ~lP~I~vl~~pt~GGv~AS~a~lgDiiiaep~a~igFaG~r-----------Vi~~t-----------~~~~lp~~fqta 250 (284) ..|+|+.+.++|.||- ..+++..|+.||.+++.+++..-+ ..... +++.+ ++ T Consensus 97 ~kPvIaai~G~a~GgG-~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~l~l~g~~~-----~a 170 (260) T 1mj3_A 97 KKPVIAAVNGYALGGG-CELAMMCDIIYAGEKAQFGQPEILLGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRI-----SA 170 (260) T ss_dssp SSCEEEEECSEEETHH-HHHHHHSSEEEEETTCEEECGGGGGTCCCCSSTTTHHHHHHCHHHHHHHHHHCCCE-----EH T ss_pred CCCEEEEECCEEEHHH-HHHHHHCCEEEECCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC-----CH T ss_conf 9829999887561999-99999789999769988989501506586413999999984289999996538714-----77 Q ss_pred HHHHHCCCCCEEECHHHHHHHHHHHHHHHHCC Q ss_conf 99996898353735899999999999997237 Q gi|254780820|r 251 EYLVEHGMIDRIVHRHDIPEVVSSLCKILTKS 282 (284) Q Consensus 251 e~l~~~G~iD~iv~r~~l~~~i~~ll~il~~~ 282 (284) +-.++-|++|.|++..++......+..-+.++ T Consensus 171 ~eA~~~Glv~~v~~~~~~~~~~~~~~~~~~~~ 202 (260) T 1mj3_A 171 QDAKQAGLVSKIFPVETLVEEAIQCAEKIANN 202 (260) T ss_dssp HHHHHHTSCSEEECTTTHHHHHHHHHHHHHHS T ss_pred HHHHHCCCCEEEECHHHHHHHHHHHHHHHHCC T ss_conf 88987898178723255579999999999727 No 68 >3ju1_A Enoyl-COA hydratase/isomerase family protein; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.30A {Shewanella oneidensis mr-1} Probab=97.14 E-value=0.022 Score=37.20 Aligned_cols=162 Identities=12% Similarity=0.096 Sum_probs=96.1 Q ss_pred EEEEECEEEEEEEEECHHHCCCCCHHHHHHHHHHHHHHHHHCC-CEEEEECCC------CCCCCC---------CH--HH Q ss_conf 8787041499999833031853577899999999999986289-689997688------877652---------12--46 Q gi|254780820|r 114 VGNVRDFKLVAVVHEFSFIGGSIGIAAGEAIVKSCERAIAEKC-PLVMFTASG------GARMQE---------GI--LS 175 (284) Q Consensus 114 ~G~I~G~~vvv~~~df~F~GGSmG~~~geki~~a~e~A~~~~~-PlI~~~~SG------GaRMqE---------G~--~s 175 (284) .+.-+|..|.+.-+|--=-.-++....-+.+..+++.+.+..- -+|++..+| |+.+.+ +- -. T Consensus 44 ~~~~~~~~Vg~ItLNRP~~lNAl~~~m~~~l~~~l~~~~~d~~v~~vVl~g~G~kaFcAG~Dl~~l~~~~~~~~~~~~~~ 123 (407) T 3ju1_A 44 LATASGKLVGVVTLNVEKALNALDLDMVRAMTVQLNLWKKDPLIACVVLDGSGEKAFCAGGDVRALYHASVAAKGQVTEV 123 (407) T ss_dssp EECTTSCEEEEEEECCGGGTSCBCHHHHHHHHHHHHHHHHCTTEEEEEEEESSSSEEECCBCCHHHHHHHHHHTSSCCHH T ss_pred EEECCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCEECCCCHHHHHHCCCCCCCCCHHH T ss_conf 72037984899998178867898999999999999999749895799998079997107818898851333333430158 Q ss_pred HHHHH-HHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCCEEEEECCCEEECCC------HHHHHHHHCCCCCCC-- Q ss_conf 77778-899999999862998899856764201111201468525553142110232------788787636778872-- Q gi|254780820|r 176 LMQLP-RTTIAINMLKDAGLPYIVVLTNPTTGGVTASYAMLGDIHLAEPGAEIGFAG------RRVIEQTVREKLPDG-- 246 (284) Q Consensus 176 L~qMa-kt~~a~~~l~~~~lP~I~vl~~pt~GGv~AS~a~lgDiiiaep~a~igFaG------~rVi~~t~~~~lp~~-- 246 (284) ..... ........+..-..|+|+.+.+.|+||=. .+++.+|+.|+.+.+.+++.- |.|--...-..+|.. T Consensus 124 ~~~~~~~~~~~~~~i~~~~kPvIa~v~G~a~GgG~-~lal~~D~riate~a~f~~pe~~iGl~P~~G~s~~~~~~~~~~~ 202 (407) T 3ju1_A 124 AKVFFEEEYRLDYLLHTYGKPVLVWGDGIVMGGGL-GLMAGASHKVVTETSRIAMPEVTIGLYPDVGGSYFLNRMPGKMG 202 (407) T ss_dssp HHHHHHHHHHHHHHHHTCSSCEEEECCSEEETHHH-HHHHHCSEEEECTTCEEECGGGGGTCCSCTTHHHHTTTSSTTHH T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEECCEEECCCC-CCCCCCCCCCCCCCCEEECHHHCEEECCCCHHHHHHHHCCHHHH T ss_conf 99999988899999985599389997670204552-00024564655898798323414542798115467462352888 Q ss_pred --------CHHHHHHHHCCCCCEEECHHHHHHHHHHHH Q ss_conf --------021599996898353735899999999999 Q gi|254780820|r 247 --------FQRSEYLVEHGMIDRIVHRHDIPEVVSSLC 276 (284) Q Consensus 247 --------fqtae~l~~~G~iD~iv~r~~l~~~i~~ll 276 (284) .-+|+-.++.|++|.+|++.++......|. T Consensus 203 ~~l~ltG~~i~a~eA~~~Glv~~vv~~~~l~~~~~~La 240 (407) T 3ju1_A 203 LFLGLTAYHMNAADACYVGLADHYLNRDDKELMFDAMA 240 (407) T ss_dssp HHHHHHCCCBCHHHHHHHTSCSEECCGGGHHHHHHHHH T ss_pred HHHHHHCCCCCHHHHHHCCCCEEECCHHHHHHHHHHHH T ss_conf 89886589776578987497417538668999999999 No 69 >1dci_A Dienoyl-COA isomerase; lyase; 1.50A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2vre_A Probab=97.08 E-value=0.026 Score=36.62 Aligned_cols=160 Identities=13% Similarity=0.201 Sum_probs=96.3 Q ss_pred EEEEEEECHHHCCCCCHHHHHHHHHHHHHHHH-HCCCEEEEECCC-----CCCCCCCHH-----------HH----HHHH Q ss_conf 99999833031853577899999999999986-289689997688-----877652124-----------67----7778 Q gi|254780820|r 122 LVAVVHEFSFIGGSIGIAAGEAIVKSCERAIA-EKCPLVMFTASG-----GARMQEGIL-----------SL----MQLP 180 (284) Q Consensus 122 vvv~~~df~F~GGSmG~~~geki~~a~e~A~~-~~~PlI~~~~SG-----GaRMqEG~~-----------sL----~qMa 180 (284) |+...+|--=-.-+|+...-+.+..+++.+.+ ..+-+|+++.+| |+.+.+-.. .. .++- T Consensus 14 V~~ItlnrP~~~Nals~~~~~~l~~~l~~~~~d~~v~~vVltg~g~~F~aG~dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (275) T 1dci_A 14 VLHVQLNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSGAGKMFTSGIDLMDMASDILQPPGDDVARIAWYLRDLI 93 (275) T ss_dssp EEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESTTCSBCCBCHHHHHHHHTSCCCSSHHHHHHHHHHHH T ss_pred EEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHH T ss_conf 89999838987899999999999999999975899679999678987416643888740113454210002567788889 Q ss_pred -HHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCCEEEEECCCEEECCCH-----------HHHHHHHC-CC----C Q ss_conf -8999999998629988998567642011112014685255531421102327-----------88787636-77----8 Q gi|254780820|r 181 -RTTIAINMLKDAGLPYIVVLTNPTTGGVTASYAMLGDIHLAEPGAEIGFAGR-----------RVIEQTVR-EK----L 243 (284) Q Consensus 181 -kt~~a~~~l~~~~lP~I~vl~~pt~GGv~AS~a~lgDiiiaep~a~igFaG~-----------rVi~~t~~-~~----l 243 (284) .....+..+..-..|.|+.+.+.|.||-. .++...|+.|+.+++.+++.-- ......++ .. + T Consensus 94 ~~~~~~~~~i~~~~kPvIaav~G~a~GGG~-~lal~~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~~~~~l 172 (275) T 1dci_A 94 SRYQKTFTVIEKCPKPVIAAIHGGCIGGGV-DLISACDIRYCTQDAFFQVKEVDVGLAADVGTLQRLPKVIGNRSLVNEL 172 (275) T ss_dssp HHHHHHHHHHHHSSSCEEEEECSEEETHHH-HHHTTSSEEEEETTCEEECCGGGGTSCCCSSHHHHGGGTCSCHHHHHHH T ss_pred HHHHHHHHHHHHCCCCEEEEECCEEEHHHH-HHHHCCCEEEECCCCCEECCCEEECCCCCCCCHHHHHHHHCCHHHHHHH T ss_conf 999999999973899899998896230648-9875446511047872236321464564656277899985206665666 Q ss_pred --CCCCHHHHHHHHCCCCCEEECHHHH-HHHHHHHHHHHHCC Q ss_conf --8720215999968983537358999-99999999997237 Q gi|254780820|r 244 --PDGFQRSEYLVEHGMIDRIVHRHDI-PEVVSSLCKILTKS 282 (284) Q Consensus 244 --p~~fqtae~l~~~G~iD~iv~r~~l-~~~i~~ll~il~~~ 282 (284) --+--+|+..++.|+||.|++..++ ......+..-+.+. T Consensus 173 l~~g~~~~a~eA~~~Glv~~vv~~~~~~~~~~~~~~~~l~~~ 214 (275) T 1dci_A 173 TFTARKMMADEALDSGLVSRVFPDKDVMLNAAFALAADISSK 214 (275) T ss_dssp HHHCCEEEHHHHHHHTSSSEEESSHHHHHHHHHHHHHHHHHS T ss_pred HHCCCCCCHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHC T ss_conf 621566687788768953697185788779999999998706 No 70 >3oc7_A Enoyl-COA hydratase; seattle structural genomics center for infectious disease, S non-pathogenic mycobacterium species, ortholog; 1.50A {Mycobacterium avium 104} Probab=97.03 E-value=0.029 Score=36.31 Aligned_cols=167 Identities=16% Similarity=0.229 Sum_probs=99.4 Q ss_pred CCEEEEEEEE-ECEEEEEEEEECHHHCCCCCHHHHHHHHHHHHHHHHHC-CCEEEEECCC-----CCCCCCC-------H Q ss_conf 7169998787-04149999983303185357789999999999998628-9689997688-----8776521-------2 Q gi|254780820|r 108 DSIVSAVGNV-RDFKLVAVVHEFSFIGGSIGIAAGEAIVKSCERAIAEK-CPLVMFTASG-----GARMQEG-------I 173 (284) Q Consensus 108 davv~G~G~I-~G~~vvv~~~df~F~GGSmG~~~geki~~a~e~A~~~~-~PlI~~~~SG-----GaRMqEG-------~ 173 (284) |.++.-.+.. .|-+|++..+|--=-.-+++...-+.+..+++.+.++. +-+|++..+| |+.+.|- . T Consensus 6 ~~~~~~~~~~~~~G~Va~itlnrP~~~Nal~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~ 85 (267) T 3oc7_A 6 DALVDYAGPAATGGPVARLTLNSPHNRNALSTALVSQLHQGLRDASSDPAVRVVVLAHTGGTFCAGADLSEAGSGGSPSS 85 (267) T ss_dssp CSSEEEECHHHHSSSEEEEEECCGGGTSCBCHHHHHHHHHHHHHHHHCTTCCEEEEEECSSEEECCBC-----------C T ss_pred CEEEEECCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHCCCCCH T ss_conf 44344057788998789999738886799899999999999999965999559999788997748987798753244302 Q ss_pred --HHHH-HHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCCEEEEECCCEEECCCHH-----------HH---- Q ss_conf --4677-77889999999986299889985676420111120146852555314211023278-----------87---- Q gi|254780820|r 174 --LSLM-QLPRTTIAINMLKDAGLPYIVVLTNPTTGGVTASYAMLGDIHLAEPGAEIGFAGRR-----------VI---- 235 (284) Q Consensus 174 --~sL~-qMakt~~a~~~l~~~~lP~I~vl~~pt~GGv~AS~a~lgDiiiaep~a~igFaG~r-----------Vi---- 235 (284) .... ........+.++.+-..|+|+.+.++|.||- +..++..|+.|+.+++.+++.-.+ .. T Consensus 86 ~~~~~~~~~~~~~~~~~~l~~~~kPvIa~v~G~a~GgG-~~la~~~D~ria~~~a~f~~~~~~~Gl~p~~g~~~~~~~~~ 164 (267) T 3oc7_A 86 AYDMAVERAREMAALMRAIVESRLPVIAAIDGHVRAGG-FGLVGACDIAVAGPRSSFALTEARIGVAPAIISLTLLPKLS 164 (267) T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSSCEEEEECSEEETTH-HHHHHHSSEEEECTTCEEECCGGGGTCCCTTTHHHHTTTSC T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECEECCCC-HHHHHHCCCCEECCCCCEEHHHHCCCCCCCCHHHHHHHHHH T ss_conf 46778999999999999999779988999827661153-37765123011177543112530207787301889999988 Q ss_pred -----HH-HHCCCCCCCCHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHCC Q ss_conf -----87-636778872021599996898353735899999999999997237 Q gi|254780820|r 236 -----EQ-TVREKLPDGFQRSEYLVEHGMIDRIVHRHDIPEVVSSLCKILTKS 282 (284) Q Consensus 236 -----~~-t~~~~lp~~fqtae~l~~~G~iD~iv~r~~l~~~i~~ll~il~~~ 282 (284) +- .+++.+ +++..++.|+||.+++ ++......+++-+.++ T Consensus 165 ~~~~~~llltg~~~-----~a~eA~~~Glv~~v~e--~~~~~a~~~a~~l~~~ 210 (267) T 3oc7_A 165 ARAAARYYLTGEKF-----DARRAEEIGLITMAAE--DLDAAIDQLVTDVGRG 210 (267) T ss_dssp HHHHHHHHHHCCCB-----CHHHHHHHTSSSEECS--SHHHHHHHHHHHHHTS T ss_pred HHHHHHHHHCCCCC-----CHHHHHHCCCEEEECH--HHHHHHHHHHHHHCCC T ss_conf 99999999858977-----8799998898588760--4433468888640247 No 71 >1q52_A MENB; lyase, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.80A {Mycobacterium tuberculosis H37RV} SCOP: c.14.1.3 PDB: 1q51_A 1rjm_A* 1rjn_A* Probab=97.01 E-value=0.03 Score=36.17 Aligned_cols=169 Identities=14% Similarity=0.164 Sum_probs=97.7 Q ss_pred EEEEEEEECEEEEEEEEECHHHCCCCCHHHHHHHHHHHHHHHHH-CCCEEEEECCC------------CCCCCCCHH--- Q ss_conf 99987870414999998330318535778999999999999862-89689997688------------877652124--- Q gi|254780820|r 111 VSAVGNVRDFKLVAVVHEFSFIGGSIGIAAGEAIVKSCERAIAE-KCPLVMFTASG------------GARMQEGIL--- 174 (284) Q Consensus 111 v~G~G~I~G~~vvv~~~df~F~GGSmG~~~geki~~a~e~A~~~-~~PlI~~~~SG------------GaRMqEG~~--- 174 (284) ++.+=.|++- |+...+|--=-.-+|....-+.+..+++.+.++ .+-+|++..++ |+.+.+-.. T Consensus 37 i~~~~~~ddg-Va~ItLNrP~~~NAl~~~m~~eL~~al~~~~~d~~vrvvVltG~~~~~~sgG~~FcaG~Dl~~~~~~~~ 115 (314) T 1q52_A 37 ITYHRHVDDA-TVRVAFNRPEVRNAFRPHTVDELYRVLDHARMSPDVGVVLLTGNGPSPKDGGWAFCSGGDQRIRGRSGY 115 (314) T ss_dssp EEEEEESSSS-EEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEECCCCTTTCCCEEECCC---------- T ss_pred EEEEEEEECC-EEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHCCC T ss_conf 6999973399-899995587756898999999999999999749997589995788766552102334767566531244 Q ss_pred ---H-----HHHHHH-----HHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCCEEEEECCC-EEECC---------- Q ss_conf ---6-----777788-----99999999862998899856764201111201468525553142-11023---------- Q gi|254780820|r 175 ---S-----LMQLPR-----TTIAINMLKDAGLPYIVVLTNPTTGGVTASYAMLGDIHLAEPGA-EIGFA---------- 230 (284) Q Consensus 175 ---s-----L~qMak-----t~~a~~~l~~~~lP~I~vl~~pt~GGv~AS~a~lgDiiiaep~a-~igFa---------- 230 (284) + .....+ .......+..-..|+|+.+-+++.||-. ..+...|++|+.+.+ .+++. T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~GgG~-~lalacD~~ias~~a~~f~~pe~~lGl~p~~ 194 (314) T 1q52_A 116 QYASGDTADTVDVARAGRLHILEVQRLIRFMPKVVICLVNGWAAGGGH-SLHVVCDLTLASREYARFKQTDADVGSFDGG 194 (314) T ss_dssp -------------------CHHHHHHHHHHSSSEEEEEECSEEETHHH-HHHHHSSEEEEETTTCEEECCGGGGTCCCCS T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCEEEECHH-HHHHHCCCHHHHHHHHHHHHHHCCCCCCCCC T ss_conf 433334201266788888999999999985899889998376610213-8876123112100377766444045878885 Q ss_pred -C-HHHHHHHHCCC------CCCCCHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHCC Q ss_conf -2-78878763677------8872021599996898353735899999999999997237 Q gi|254780820|r 231 -G-RRVIEQTVREK------LPDGFQRSEYLVEHGMIDRIVHRHDIPEVVSSLCKILTKS 282 (284) Q Consensus 231 -G-~rVi~~t~~~~------lp~~fqtae~l~~~G~iD~iv~r~~l~~~i~~ll~il~~~ 282 (284) | .+.. ..+|.. +--.--+|+..++.|+||.||+..++.+....+..-+.++ T Consensus 195 g~~~~L~-~~vG~~~A~~llltg~~i~a~eA~~~Glv~~vv~~~el~~~a~~~a~~i~~~ 253 (314) T 1q52_A 195 YGSAYLA-RQVGQKFAREIFFLGRTYTAEQMHQMGAVNAVAEHAELETVGLQWAAEINAK 253 (314) T ss_dssp TTTHHHH-HHHCHHHHHHHHHHCCEECHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHTS T ss_pred CHHHHHH-HHHHHHHHHHHHHHCCCCCHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHC T ss_conf 0699999-9856999999998589888889730783279638789999999999999808 No 72 >1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* Probab=96.93 E-value=0.035 Score=35.72 Aligned_cols=159 Identities=13% Similarity=0.150 Sum_probs=99.3 Q ss_pred EEEEEEE-CHHHCCCCCHHHHHHHHHHHHHHHHH-CCCEEEEECCCC-----CCCCCC-------HHHH-HHHHHHHHHH Q ss_conf 9999983-30318535778999999999999862-896899976888-----776521-------2467-7778899999 Q gi|254780820|r 122 LVAVVHE-FSFIGGSIGIAAGEAIVKSCERAIAE-KCPLVMFTASGG-----ARMQEG-------ILSL-MQLPRTTIAI 186 (284) Q Consensus 122 vvv~~~d-f~F~GGSmG~~~geki~~a~e~A~~~-~~PlI~~~~SGG-----aRMqEG-------~~sL-~qMakt~~a~ 186 (284) |++..+| -.=-.-+++...-+.+..+++.+..+ .+-+|++...|+ +.+.|- ...+ .........+ T Consensus 17 Ia~itln~~p~~~Nal~~~~~~el~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (715) T 1wdk_A 17 IVELKFDLKGESVNKFNRLTLNELRQAVDAIKADASVKGVIVSSGKDVFIVGADITEFVENFKLPDAELIAGNLEANKIF 96 (715) T ss_dssp EEEEEECCTTSSSCBCCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSSSBBCCCHHHHHHHTTSCHHHHHHHHHHHHHHH T ss_pred EEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEECCCHHHHHHCCCCCHHHHHHHHHHHHHHH T ss_conf 89999898996677989999999999999997488976999988899716580989896355788678887678999999 Q ss_pred HHHHHCCCCEEEEECCCCCCEEEEEECCCCCEEEEECCCEEECCCHHH-----------HHHHHCCC------CCCCCHH Q ss_conf 999862998899856764201111201468525553142110232788-----------78763677------8872021 Q gi|254780820|r 187 NMLKDAGLPYIVVLTNPTTGGVTASYAMLGDIHLAEPGAEIGFAGRRV-----------IEQTVREK------LPDGFQR 249 (284) Q Consensus 187 ~~l~~~~lP~I~vl~~pt~GGv~AS~a~lgDiiiaep~a~igFaG~rV-----------i~~t~~~~------lp~~fqt 249 (284) .++.+...|.|+.+.++|.||= ...++..|+.|+.+++.+||.--++ ....+|.. +--..-+ T Consensus 97 ~~i~~~~~PvIAai~G~a~GgG-~elalacD~ria~~~a~f~~pev~lGl~p~~gg~~~l~r~iG~~~a~~l~ltg~~~~ 175 (715) T 1wdk_A 97 SDFEDLNVPTVAAINGIALGGG-LEMCLAADFRVMADSAKIGLPEVKLGIYPGFGGTVRLPRLIGVDNAVEWIASGKENR 175 (715) T ss_dssp HHHHTCSSCEEEEECSCEETHH-HHHHHTSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHCCCEE T ss_pred HHHHHCCCCEEEEECCHHHHHH-HHHHHHCCEEEEECCCEEECHHHHHCCCCCCCCCEECHHHCCHHHHHHHHCCCCCCH T ss_conf 9998499989999786332999-999997899998299899886776388888774455101024367888630233404 Q ss_pred HHHHHHCCCCCEEECHHHHHHHHHHHHHHHHC Q ss_conf 59999689835373589999999999999723 Q gi|254780820|r 250 SEYLVEHGMIDRIVHRHDIPEVVSSLCKILTK 281 (284) Q Consensus 250 ae~l~~~G~iD~iv~r~~l~~~i~~ll~il~~ 281 (284) ++..++.|+||.||+..+|.+....++.-+.+ T Consensus 176 a~eA~~~Glvd~vv~~~~l~~~a~~~a~~~~~ 207 (715) T 1wdk_A 176 AEDALKVSAVDAVVTADKLGAAALDLIKRAIS 207 (715) T ss_dssp HHHHHHTTSSSEEECGGGHHHHHHHHHHHHHT T ss_pred HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHC T ss_conf 99999859974248888999999999998702 No 73 >2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans} Probab=96.93 E-value=0.03 Score=36.25 Aligned_cols=164 Identities=13% Similarity=0.181 Sum_probs=93.9 Q ss_pred EECEEEEEEEEECHHHC----------CCCCHHHHHHHHHHHHHHH-HH-CCCEEEEECCCC------CCCCC------- Q ss_conf 70414999998330318----------5357789999999999998-62-896899976888------77652------- Q gi|254780820|r 117 VRDFKLVAVVHEFSFIG----------GSIGIAAGEAIVKSCERAI-AE-KCPLVMFTASGG------ARMQE------- 171 (284) Q Consensus 117 I~G~~vvv~~~df~F~G----------GSmG~~~geki~~a~e~A~-~~-~~PlI~~~~SGG------aRMqE------- 171 (284) ++|. |+...+|--=-+ -++....-+.+..+++... ++ .+=+|++...|+ +.+.| T Consensus 27 ~~g~-VA~ItLnrPe~~g~~~~~~~KLNAls~~m~~EL~dAl~~l~~d~pdVrvVVLtGag~raFcAGaDL~e~~~~~~~ 105 (556) T 2w3p_A 27 FNGP-VATLGIDIAEDGGIRDGYKLKLNSYDLGVDIELHDAIQRIRFEHPEVRTVVLTSLKDRVFCSGANIFMLGLSTHA 105 (556) T ss_dssp EETT-EEEEEECCCTTCCSSSSCCCCTTEECHHHHHHHHHHHHHHHHHCTTCCEEEEEESSSSEEECEECHHHHHHSCHH T ss_pred EECC-EEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCEEECCCCHHHHHCCCCC T ss_conf 8899-999998178755555567878588999999999999999982799848999980899916568488867425740 Q ss_pred CHHHHHHHH-HHHHHH-HHHHHCCCCEEEEECCCCCCEEEEEECCCCCEEEEE--CCCEEECCC-------------HHH Q ss_conf 124677778-899999-999862998899856764201111201468525553--142110232-------------788 Q gi|254780820|r 172 GILSLMQLP-RTTIAI-NMLKDAGLPYIVVLTNPTTGGVTASYAMLGDIHLAE--PGAEIGFAG-------------RRV 234 (284) Q Consensus 172 G~~sL~qMa-kt~~a~-~~l~~~~lP~I~vl~~pt~GGv~AS~a~lgDiiiae--p~a~igFaG-------------~rV 234 (284) ......+.. .+...+ ...+....|+|+.+.++|.||= ..++...|++|+- +++.+++.- +|+ T Consensus 106 ~~~~~~~~~~e~~~~~~~~~~~~~kPvIAAVnG~A~GGG-~eLALaCD~rIavad~~a~~~lPEv~~lGl~PG~ggt~R~ 184 (556) T 2w3p_A 106 WKVNFCKFTNETRNGLEDSSRHSGLKFLAAVNGACAGGG-YELALACDEIYLVDDRSSSVSLPEVPLLGVLPGTGGLTRV 184 (556) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSCEEEEEECSEEETHH-HHHHHHSSEEEEECSSSCEEECCHHHHHSSCCTTTHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCEEEECC-CHHHCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCHHHHH T ss_conf 156689999999999999998389989999758586612-0644065720304344420026421136778974342566 Q ss_pred HHH-HHCCC------CCCCCHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHCC Q ss_conf 787-63677------8872021599996898353735899999999999997237 Q gi|254780820|r 235 IEQ-TVREK------LPDGFQRSEYLVEHGMIDRIVHRHDIPEVVSSLCKILTKS 282 (284) Q Consensus 235 i~~-t~~~~------lp~~fqtae~l~~~G~iD~iv~r~~l~~~i~~ll~il~~~ 282 (284) +.. .+|.. +-..--+|+-.++-|+||.||+..++-+....+..-+.++ T Consensus 185 ~l~r~VG~a~A~ellltGe~i~AeeA~~~GLVd~VVp~eeL~e~A~elA~~lA~~ 239 (556) T 2w3p_A 185 TDKRKVRHDRADIFCTVVEGVRGERAKAWRLVDEVVKPNQFDQAIQARALELAAQ 239 (556) T ss_dssp HHTSCCCHHHHHHHTTCSSCEEHHHHHHTTSCSEEECHHHHHHHHHHHHHHHHTT T ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCEECCHHHHHHHHHHHHHHHHCC T ss_conf 6664512999999998299747999997697117728469999999999999769 No 74 >3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A Probab=96.87 E-value=0.0095 Score=39.91 Aligned_cols=82 Identities=21% Similarity=0.322 Sum_probs=57.6 Q ss_pred CCCHHHHHHHHHHHHHHHHHCC--CEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEE- Q ss_conf 3577899999999999986289--6899976888776521246777788999999998629988998567642011112- Q gi|254780820|r 135 SIGIAAGEAIVKSCERAIAEKC--PLVMFTASGGARMQEGILSLMQLPRTTIAINMLKDAGLPYIVVLTNPTTGGVTAS- 211 (284) Q Consensus 135 SmG~~~geki~~a~e~A~~~~~--PlI~~~~SGGaRMqEG~~sL~qMakt~~a~~~l~~~~lP~I~vl~~pt~GGv~AS- 211 (284) +-|.+.++.+++.++.|.++.- -+|+-..|+|. ++.+--. +..++.++++++.|.++.+ |++.|| T Consensus 318 ~~~~~~~~~~~~~l~~a~~d~~vkavvLrInSpGG----s~~as~~---i~~~i~~~k~~~KPVv~~~-----~~~aASg 385 (593) T 3bf0_A 318 TQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGG----SVTASEV---IRAELAAARAAGKPVVVSM-----GGMAASG 385 (593) T ss_dssp CTTSEEHHHHHHHHHHHHHCTTEEEEEEEEEEEEE----CHHHHHH---HHHHHHHHHHTTCCEEEEE-----EEEEETH T ss_pred CCCCCCCHHHHHHHHHHHCCCCCEEEEEEEECCCC----CHHHHHH---HHHHHHHHHHCCCCEEEEE-----CCCCCHH T ss_conf 67876617889999866507542179999979898----5778999---9999999985499789998-----7866415 Q ss_pred ---ECCCCCEEEEECCCEEE Q ss_conf ---01468525553142110 Q gi|254780820|r 212 ---YAMLGDIHLAEPGAEIG 228 (284) Q Consensus 212 ---~a~lgDiiiaep~a~ig 228 (284) .|+-+|-|+|.|.+.+| T Consensus 386 gY~ia~~ad~I~A~p~titG 405 (593) T 3bf0_A 386 GYWISTPANYIVANPSTLTG 405 (593) T ss_dssp HHHTTTTCSEEEECTTCEEE T ss_pred HHHHHHCCCEEEECCCCEEE T ss_conf 55765336747866865144 No 75 >1pjh_A Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral fold, inter-trimer contacts; 2.10A {Saccharomyces cerevisiae} SCOP: c.14.1.3 PDB: 1hno_A 1k39_A* 1hnu_A Probab=96.81 E-value=0.043 Score=35.05 Aligned_cols=143 Identities=12% Similarity=0.090 Sum_probs=87.4 Q ss_pred EEECEEEEEEEEECHHHCCCCCHHHHHHHHHHHHHHHH-HCCCEEEEECC-----CCCCCCCCHH--------------- Q ss_conf 87041499999833031853577899999999999986-28968999768-----8877652124--------------- Q gi|254780820|r 116 NVRDFKLVAVVHEFSFIGGSIGIAAGEAIVKSCERAIA-EKCPLVMFTAS-----GGARMQEGIL--------------- 174 (284) Q Consensus 116 ~I~G~~vvv~~~df~F~GGSmG~~~geki~~a~e~A~~-~~~PlI~~~~S-----GGaRMqEG~~--------------- 174 (284) .++| .|.+..+|--=-.-++....-..+..+++.+.+ ..+=+|++..+ .|+.+.+-.. T Consensus 14 ~~~~-~v~~ItlnrP~~~Nal~~~~~~~l~~al~~~~~d~~v~~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~ 92 (280) T 1pjh_A 14 RIEG-PFFIIHLINPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSSGRFFSSGADFKGIAKAQGDDTNKYPSETSK 92 (280) T ss_dssp EEET-TEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECBTTBSBCCBCHHHHHC-------CCSSHHHH T ss_pred EEEC-CEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEECCCCHHHHHHCCCCCCCCCCHHHHH T ss_conf 9989-999999768887789899999999999999974999769999669987438872688872234542111013478 Q ss_pred HHH-HHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCCEEEE-ECCCEEECC----------C-----HHHH-- Q ss_conf 677-77889999999986299889985676420111120146852555-314211023----------2-----7887-- Q gi|254780820|r 175 SLM-QLPRTTIAINMLKDAGLPYIVVLTNPTTGGVTASYAMLGDIHLA-EPGAEIGFA----------G-----RRVI-- 235 (284) Q Consensus 175 sL~-qMakt~~a~~~l~~~~lP~I~vl~~pt~GGv~AS~a~lgDiiia-ep~a~igFa----------G-----~rVi-- 235 (284) ... .+.+....+..+.+-..|+|+.+.++|.||=. -.|+..|+.|| ++.+.+++. | ||.+ T Consensus 93 ~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~GgG~-~lal~~D~ria~~d~~~~~~pe~~~Gl~p~~g~~~~l~~~vG~ 171 (280) T 1pjh_A 93 WVSNFVARNVYVTDAFIKHSKVLICCLNGPAIGLSA-ALVALCDIVYSINDKVYLLYPFANLGLITEGGTTVSLPLKFGT 171 (280) T ss_dssp HHHHTHHHHHHHHHHHHHCCSEEEEEECSCEEHHHH-HHHHHSSEEEESSTTCEEECCHHHHTCCCCTTHHHHHHHHHCH T ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEEECCEECCCCC-CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHH T ss_conf 999999999999999996899989997781014664-2332210577644423423620167838873232114777359 Q ss_pred ---HHH--HCCCCCCCCHHHHHHHHCCCCCEEECH Q ss_conf ---876--367788720215999968983537358 Q gi|254780820|r 236 ---EQT--VREKLPDGFQRSEYLVEHGMIDRIVHR 265 (284) Q Consensus 236 ---~~t--~~~~lp~~fqtae~l~~~G~iD~iv~r 265 (284) .+- +++.+ +|+..++.|+||.||+. T Consensus 172 ~~a~~llltg~~~-----~a~eA~~~Glv~~vv~~ 201 (280) T 1pjh_A 172 NTTYECLMFNKPF-----KYDIMCENGFISKNFNM 201 (280) T ss_dssp HHHHHHHHTTCCE-----EHHHHHHTTCCSEECCC T ss_pred HHHHHHHHCCCCC-----CHHHHHHCCCEEEEECC T ss_conf 9999999839957-----79999987994487487 No 76 >2np9_A DPGC; protein inhibitor complex, oxidoreductase; HET: YE1; 2.45A {Streptomyces toyocaensis} PDB: 2pg8_A* Probab=96.81 E-value=0.044 Score=35.02 Aligned_cols=152 Identities=13% Similarity=0.144 Sum_probs=92.7 Q ss_pred EEEEEEECHHHCCCCCHHHHHHHHHHHHHHHH-HCCCEEEEECC--------------CCCCCC---CCHHHHH--HHHH Q ss_conf 99999833031853577899999999999986-28968999768--------------887765---2124677--7788 Q gi|254780820|r 122 LVAVVHEFSFIGGSIGIAAGEAIVKSCERAIA-EKCPLVMFTAS--------------GGARMQ---EGILSLM--QLPR 181 (284) Q Consensus 122 vvv~~~df~F~GGSmG~~~geki~~a~e~A~~-~~~PlI~~~~S--------------GGaRMq---EG~~sL~--qMak 181 (284) |+...+|--=-.-+++...-+-+..+++.+.. ..+-+|++... .|+.+. ++..+.. .+.+ T Consensus 177 Va~ITLNRPek~NAls~~m~~eL~~al~~~~~D~~VrvVVLtGa~~~~~~~~gGr~FcAG~DL~el~~~~~~~~~~~~~~ 256 (440) T 2np9_A 177 VARLTMCRDDRLNAEDGQQVDDMETAVDLALLDPGVRVGLLRGGVMSHPRYRGKRVFSAGINLKYLSQGGISLVDFLMRR 256 (440) T ss_dssp EEEEEECCTTTTTCBCHHHHHHHHHHHHHHHHCTTCSEEEEEECBCCSTTTTTCBCCBCCBCHHHHHTTCCCTTTTHHHH T ss_pred EEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCEEECCCCHHHHHHCCCCCCHHHHHH T ss_conf 99999758887789999999999999999962999649999688866665788887754819998861677642156665 Q ss_pred HHHHHHHH----------------HHCCCCEEEEECCCCCCEEEEEECCCCCEEEEECCCEEECCCHHH----------- Q ss_conf 99999999----------------862998899856764201111201468525553142110232788----------- Q gi|254780820|r 182 TTIAINML----------------KDAGLPYIVVLTNPTTGGVTASYAMLGDIHLAEPGAEIGFAGRRV----------- 234 (284) Q Consensus 182 t~~a~~~l----------------~~~~lP~I~vl~~pt~GGv~AS~a~lgDiiiaep~a~igFaG~rV----------- 234 (284) ....+.++ .+...|+|+.+.++|.||= ..+++..|+.|+.+++.+++.-.++ T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~KPvIAaVnG~A~GGG-~eLalacD~rIAae~A~F~lPe~~lGi~Pg~gs~~L 335 (440) T 2np9_A 257 ELGYIHKLVRGVLTNDDRPGWWHSPRIEKPWVAAVDGFAIGGG-AQLLLVFDRVLASSDAYFSLPAAKEGIIPGAANLRL 335 (440) T ss_dssp HHTHHHHHHHCEECCSCSTTTTTCCEECCCEEEEECSEEETHH-HHHGGGCSEEEEETTCEEECCCTTTCCCCTTHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCEEECCC-CEEECCCCCCCCCCCCCCCCCCCCEECCCCCHHHHH T ss_conf 4567889998876554679999998489988999668456176-501237550200301302586544512887028799 Q ss_pred --------HHHH--HCCCCCCCCHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHH Q ss_conf --------7876--36778872021599996898353735899999999999997 Q gi|254780820|r 235 --------IEQT--VREKLPDGFQRSEYLVEHGMIDRIVHRHDIPEVVSSLCKIL 279 (284) Q Consensus 235 --------i~~t--~~~~lp~~fqtae~l~~~G~iD~iv~r~~l~~~i~~ll~il 279 (284) ..+. +|+.+ +|+..++.|+||.||+..++...+..++.-+ T Consensus 336 ~r~vG~~~A~ellLtG~~i-----sA~EA~~~GLV~eVVp~deL~~~a~~~a~~l 385 (440) T 2np9_A 336 GRFAGPRVSRQVILEGRRI-----WAKEPEARLLVDEVVEPDELDAAIERSLTRL 385 (440) T ss_dssp HHHHHHHHHHHHHHHCCCE-----ETTSGGGGGTCSEEECHHHHHHHHHHHHHTT T ss_pred HHHHCHHHHHHHHHCCCCC-----CHHHHHHCCCCEEECCHHHHHHHHHHHHHHC T ss_conf 9985999999999749917-----7999997698507768589999999999862 No 77 >3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A Probab=96.79 E-value=0.018 Score=37.82 Aligned_cols=159 Identities=16% Similarity=0.228 Sum_probs=96.9 Q ss_pred EEEEEEEEECEEEEEE---EEECHHHCCCCC---HHHHHHHHHHHHHHHHH-CCCEEEEE-CC-CCCCCCCCHHHHHHHH Q ss_conf 6999878704149999---983303185357---78999999999999862-89689997-68-8877652124677778 Q gi|254780820|r 110 IVSAVGNVRDFKLVAV---VHEFSFIGGSIG---IAAGEAIVKSCERAIAE-KCPLVMFT-AS-GGARMQEGILSLMQLP 180 (284) Q Consensus 110 vv~G~G~I~G~~vvv~---~~df~F~GGSmG---~~~geki~~a~e~A~~~-~~PlI~~~-~S-GGaRMqEG~~sL~qMa 180 (284) ++--.|.|-..+...- .....++|++-. ...=.-++++++.|.+. ++--|.+- .| +| .++.++. T Consensus 35 ~l~l~G~ive~~~~~~p~~~~~~~~~g~~~~~~~~~~l~div~~i~~Aa~D~~IkgIvL~~~~~~g-------g~~a~~~ 107 (593) T 3bf0_A 35 LLDISGVIVDKPDSSQRFSKLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAG-------GDQPSMQ 107 (593) T ss_dssp EECCEEEEESCC--------------------CCEEEHHHHHHHHHHHHHCTTCCCEEEECTEEEE-------CCHHHHH T ss_pred EEECCEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCC-------CCHHHHH T ss_conf 994771685368888828888787516887754444499999999998349995089998069888-------7389999 Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCCEEEEECCCEEECCCHHHH------------------------- Q ss_conf 8999999998629988998567642011112014685255531421102327887------------------------- Q gi|254780820|r 181 RTTIAINMLKDAGLPYIVVLTNPTTGGVTASYAMLGDIHLAEPGAEIGFAGRRVI------------------------- 235 (284) Q Consensus 181 kt~~a~~~l~~~~lP~I~vl~~pt~GGv~AS~a~lgDiiiaep~a~igFaG~rVi------------------------- 235 (284) .+..|+.+++++|-|.++...+.+.++- -.|+.+|-|++.|.+.+++-|...- T Consensus 108 ei~~al~~fk~sgKpVvA~~~~~~~~~Y--~LAS~AD~I~~~p~g~v~~~G~~~~~~~~k~~LdKlGI~~~v~~~G~yKs 185 (593) T 3bf0_A 108 YIGKALKEFRDSGKPVYAVGENYSQGQY--YLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKVSTHVFRVGTYKS 185 (593) T ss_dssp HHHHHHHHHHHTTCCEEEEESCEEHHHH--HHHTTSSEEEECTTCCEECCCCBCCEEECHHHHHHTTCEEEEEEECTTCG T ss_pred HHHHHHHHHHHHCCCEEEEECCCCHHHH--HHHHHCCEEEECCCCEEEEEEEEEECCCHHHHHHHCCCCEEEEEECCCCC T ss_conf 9999999999709929999615521323--74643898998899668887038862567789997598069996156456 Q ss_pred --HHHHC-----------------------------CCCC-C----------------CCHHHHHHHHCCCCCEEECHHH Q ss_conf --87636-----------------------------7788-7----------------2021599996898353735899 Q gi|254780820|r 236 --EQTVR-----------------------------EKLP-D----------------GFQRSEYLVEHGMIDRIVHRHD 267 (284) Q Consensus 236 --~~t~~-----------------------------~~lp-~----------------~fqtae~l~~~G~iD~iv~r~~ 267 (284) |.-++ -.++ + +..+++..++.|+||.+..+.| T Consensus 186 a~epf~~~~mS~e~re~~~~ll~~l~~~f~~~Va~~R~l~~~~v~~~~~~~~~~l~~~~~~~a~~Al~~gLVD~l~~~de 265 (593) T 3bf0_A 186 AVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQIPAEQVFPGAQGLLEGLTKTGGDTAKYALENKLVDALASSAE 265 (593) T ss_dssp GGHHHHCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHCCHHHHHHHHHHTTTTCHHHHHHHTTSSSEECCHHH T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHH T ss_conf 67866667899999999999999999999999988627883112234556888877607614999998655420012566 Q ss_pred HHHHHHHHHH Q ss_conf 9999999999 Q gi|254780820|r 268 IPEVVSSLCK 277 (284) Q Consensus 268 l~~~i~~ll~ 277 (284) +++.+...+. T Consensus 266 ~~~~l~~~~g 275 (593) T 3bf0_A 266 IEKALTKEFG 275 (593) T ss_dssp HHHHHHHHHC T ss_pred HHHHHHHHHC T ss_conf 7777787508 No 78 >3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Pseudomonas aeruginosa} Probab=96.73 E-value=0.01 Score=39.62 Aligned_cols=158 Identities=11% Similarity=0.027 Sum_probs=94.1 Q ss_pred EEEEEEECHHHCCCCCHHHHHHHHHHHHHHHHH-CCCEEEEECCCCCCCCCCHHHHHHHHHH------------H-HHHH Q ss_conf 999998330318535778999999999999862-8968999768887765212467777889------------9-9999 Q gi|254780820|r 122 LVAVVHEFSFIGGSIGIAAGEAIVKSCERAIAE-KCPLVMFTASGGARMQEGILSLMQLPRT------------T-IAIN 187 (284) Q Consensus 122 vvv~~~df~F~GGSmG~~~geki~~a~e~A~~~-~~PlI~~~~SGGaRMqEG~~sL~qMakt------------~-~a~~ 187 (284) |.+.-+|--=-.-+++...-+-+..+++.+.+. .+-+|++..+|+.=-..+- |-.|..- . .... T Consensus 22 v~~ItlnrP~~~Nals~~~~~~l~~~l~~~~~d~~~~~vvl~g~g~~FsaG~D--l~~~~~~~~~~~~~~~~~~~~~~~~ 99 (258) T 3lao_A 22 LFLIGLDRAGKRNAFDSAMLADLALAMGEYERSEESRCAVLFAHGEHFTAGLD--LMELAPKLAASGFRYPDGGVDPWGV 99 (258) T ss_dssp EEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCBC--HHHHGGGCBTTBCCCCTTCCCTTSC T ss_pred EEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCC--HHHHCCCCCHHHHHHHHHHHHHHHH T ss_conf 99999768987789899999999999999973999659999779986615874--6652533303567766533348999 Q ss_pred HHHHCCCCEEEEECCCCCCEEEEEECCCCCEEEEECCCEEECCC---------------HHHHHHHHCCC--CCCCCHHH Q ss_conf 99862998899856764201111201468525553142110232---------------78878763677--88720215 Q gi|254780820|r 188 MLKDAGLPYIVVLTNPTTGGVTASYAMLGDIHLAEPGAEIGFAG---------------RRVIEQTVREK--LPDGFQRS 250 (284) Q Consensus 188 ~l~~~~lP~I~vl~~pt~GGv~AS~a~lgDiiiaep~a~igFaG---------------~rVi~~t~~~~--lp~~fqta 250 (284) .+..-..|.|+.+.+++.||= +.++...|+.|+.+++.++|.. ||.|-...-.+ +.-.--+| T Consensus 100 ~~~~~~kPvIa~v~G~a~GgG-~~lal~~D~~ia~~~a~f~~pe~~~G~~p~~~~~~~l~r~ig~~~a~~l~ltg~~~~a 178 (258) T 3lao_A 100 VQPRRSKPLVVAVQGTCWTAG-IELMLNADIAVAARGTRFAHLEVLRGIPPLGGSTVRFPRAAGWTDAMRYILTGDEFDA 178 (258) T ss_dssp SSSCCCSCEEEEECSEEETHH-HHHHHTSSEEEEETTCEEECGGGGTCCCSSCCCCSHHHHHHCHHHHHHHHTTCCCEEH T ss_pred HHHHCCCCEEEEEECEEECCC-CHHHHCCCHHHHHHCCEEECHHHCCCCCCCCCHHHHHHHHHCHHHHHHHHCCCCCCCH T ss_conf 987389988999818260376-4431033522130136771643300788420068888888467899988412880569 Q ss_pred HHHHHCCCCCEEECHHHHHHHHHHHHHHHHCC Q ss_conf 99996898353735899999999999997237 Q gi|254780820|r 251 EYLVEHGMIDRIVHRHDIPEVVSSLCKILTKS 282 (284) Q Consensus 251 e~l~~~G~iD~iv~r~~l~~~i~~ll~il~~~ 282 (284) +..++.|+||.||+..++.+....+..-+.++ T Consensus 179 ~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~ 210 (258) T 3lao_A 179 DEALRMRLLTEVVEPGEELARALEYAERIARA 210 (258) T ss_dssp HHHHHTTSCSEEECTTCHHHHHHHHHHHHHHS T ss_pred HHHHHCCCEEEEECCCHHHHHHHHHHHHHHHC T ss_conf 99977799208848208999999999987625 No 79 >2x58_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, lyase, isomerase, peroxisome; HET: ADP COA; 2.80A {Rattus norvegicus} Probab=96.60 E-value=0.06 Score=34.01 Aligned_cols=155 Identities=10% Similarity=0.159 Sum_probs=92.7 Q ss_pred EEEECEEEEEEEEECHHHCCCCCHHHHHHHHHHHHHHHHHC-CCEEEEECCC-----CCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 78704149999983303185357789999999999998628-9689997688-----87765212467777889999999 Q gi|254780820|r 115 GNVRDFKLVAVVHEFSFIGGSIGIAAGEAIVKSCERAIAEK-CPLVMFTASG-----GARMQEGILSLMQLPRTTIAINM 188 (284) Q Consensus 115 G~I~G~~vvv~~~df~F~GGSmG~~~geki~~a~e~A~~~~-~PlI~~~~SG-----GaRMqEG~~sL~qMakt~~a~~~ 188 (284) -+|++.=.++-..+.. --+++...-+.+..+++.+.++. +=+|+++.+| |+.+.| ..++..-.....-+++ T Consensus 10 ~~~~~~ia~itln~P~--~Nal~~~~~~~l~~~l~~~~~d~~v~~vvltg~g~~F~aG~Dl~~-~~~~~~~~~~~~~~~~ 86 (727) T 2x58_A 10 LRLPHSLAMIRLCNPP--VNAVSPTVIREVRNGLQKAGSDHTVKAIVICGANGNFCAGADIHG-FSAFTPGLALGSLVDE 86 (727) T ss_dssp EECGGGEEEEEECCTT--TTCBCHHHHHHHHHHHHHHHSCTTCCEEEEEESTTCSBCCBCGGG-CSSSCSCSHHHHHHHH T ss_pred EEEECCEEEEEECCCC--CCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHH-HHCCCCHHHHHHHHHH T ss_conf 9986998999978886--478999999999999999864899769999898997556808575-6535905799999999 Q ss_pred HHHCCCCEEEEECCCCCCEEEEEECCCCCEEEEECCCEEECCCHH-----------HHHHHHCCC------CCCCCHHHH Q ss_conf 986299889985676420111120146852555314211023278-----------878763677------887202159 Q gi|254780820|r 189 LKDAGLPYIVVLTNPTTGGVTASYAMLGDIHLAEPGAEIGFAGRR-----------VIEQTVREK------LPDGFQRSE 251 (284) Q Consensus 189 l~~~~lP~I~vl~~pt~GGv~AS~a~lgDiiiaep~a~igFaG~r-----------Vi~~t~~~~------lp~~fqtae 251 (284) +.+...|+|+.+.+.|.||=. .+|+..|+.|+.+++.+|+.--+ .....+|.. +.-..-+++ T Consensus 87 i~~~~kPvIaav~G~a~GgG~-elalacD~ria~~~a~~g~pev~lGl~p~~ggt~~l~r~iG~~~a~~l~l~g~~~~a~ 165 (727) T 2x58_A 87 IQRYQKPVLAAIQGVALGGGL-ELALGCHYRIANAKARVGLPEVTLGILPGARGTQLLPRVVGVPVALDLITSGKYLSAD 165 (727) T ss_dssp HHTCSSCEEEEECSEEETHHH-HHHHHSSEEEEETTCEEECCGGGGTCCCTTTHHHHHHHHHCHHHHHHHHHHCCEEEHH T ss_pred HHHCCCCEEEEECCHHHHHHH-HHHHHCCEEEECCCCEEECCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHCCCCCCHH T ss_conf 994999899998845329999-9999659899759979988300516188616999998852577899987537878789 Q ss_pred HHHHCCCCCEEECHHHHHHHHH Q ss_conf 9996898353735899999999 Q gi|254780820|r 252 YLVEHGMIDRIVHRHDIPEVVS 273 (284) Q Consensus 252 ~l~~~G~iD~iv~r~~l~~~i~ 273 (284) ..++.|+||.|++..++...+. T Consensus 166 ~A~~~Glvd~v~~~~~~~~a~~ 187 (727) T 2x58_A 166 EALRLGILDAVVKSDPVEEAIK 187 (727) T ss_dssp HHHTTTSCSEEESSCHHHHHHH T ss_pred HHHHCCCCCEECCCHHHHHHHH T ss_conf 9986599717647500799999 No 80 >2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabolism, lyase, structural genomics, NPPSFA; 2.16A {Geobacillus kaustophilus HTA426} Probab=96.51 E-value=0.067 Score=33.62 Aligned_cols=155 Identities=14% Similarity=0.190 Sum_probs=93.8 Q ss_pred EEEEEEECHHHCCCCCHHHHHHHHHHHHHHHHH-CCCEEEEECCC------CCCCCCC---HHH--HHHHHHHHHHHHHH Q ss_conf 999998330318535778999999999999862-89689997688------8776521---246--77778899999999 Q gi|254780820|r 122 LVAVVHEFSFIGGSIGIAAGEAIVKSCERAIAE-KCPLVMFTASG------GARMQEG---ILS--LMQLPRTTIAINML 189 (284) Q Consensus 122 vvv~~~df~F~GGSmG~~~geki~~a~e~A~~~-~~PlI~~~~SG------GaRMqEG---~~s--L~qMakt~~a~~~l 189 (284) |....+|-.= --++....-+.+..+++.+.++ .+-+|++..+| |+.+.|- ..+ ...+......+.++ T Consensus 19 v~~itln~pk-~Nal~~~m~~~l~~~l~~~~~d~~vr~vil~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~i 97 (265) T 2ppy_A 19 IAEIHLHINK-SNSYDLEFYKEFNAAIDDIRFDPDIKVVIVMSDVPKFFSAGADINFLRSADPRFKTQFCLFCNETLDKI 97 (265) T ss_dssp EEEEEECSST-TCCBCHHHHHHHHHHHHHHHTCTTCCEEEEEECSTTEEECCBCHHHHTTSCHHHHHHHHHHHHHHHHHH T ss_pred EEEEEECCCC-CCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH T ss_conf 9999989899-899999999999999999984999659999617896056785210210100567889999888999998 Q ss_pred HHCCCCEEEEECCCCCCEEEEEECCCCCEEEE-ECCC-------EEECCCH--------HHHHHH-------HCCCCCCC Q ss_conf 86299889985676420111120146852555-3142-------1102327--------887876-------36778872 Q gi|254780820|r 190 KDAGLPYIVVLTNPTTGGVTASYAMLGDIHLA-EPGA-------EIGFAGR--------RVIEQT-------VREKLPDG 246 (284) Q Consensus 190 ~~~~lP~I~vl~~pt~GGv~AS~a~lgDiiia-ep~a-------~igFaG~--------rVi~~t-------~~~~lp~~ 246 (284) .....|+|+.+.+++.||= +.++...|++++ ...+ .+|+..+ |.+-.. +++.+ T Consensus 98 ~~~~kpvIaav~G~a~GgG-~~lal~~D~ri~~~~~a~~~~pe~~~Gl~p~~~~~~~l~r~vG~~~a~~l~ltg~~~--- 173 (265) T 2ppy_A 98 ARSPQVYIACLEGHTVGGG-LEMALACDLRFMGDEAGKIGLPEVSLGVLAGTGGTQRLARLIGYSRALDMNITGETI--- 173 (265) T ss_dssp HHSSSEEEEEECSEEETHH-HHHHHTSSEEEEETTCCCEECCGGGGTCCCTTTHHHHHHHHHCHHHHHHHHHHCCCB--- T ss_pred HHCCCCEEEEECCEECCCC-CEEECCCCEEEEECCCCCCCCCCCEECCCCCCCHHHHHHHHHCHHHHHHHHHCCCCC--- T ss_conf 6089878999817233686-344102426899515423447203567788856899999985899999999759977--- Q ss_pred CHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHCCC Q ss_conf 0215999968983537358999999999999972378 Q gi|254780820|r 247 FQRSEYLVEHGMIDRIVHRHDIPEVVSSLCKILTKSV 283 (284) Q Consensus 247 fqtae~l~~~G~iD~iv~r~~l~~~i~~ll~il~~~~ 283 (284) +|+..++-|+||.|++..++.+....+..-+.+++ T Consensus 174 --~a~eA~~~Glv~~v~~~~~~~~~~~~~a~~~~~~~ 208 (265) T 2ppy_A 174 --TPQEALEIGLVNRVFPQAETRERTREYARKLANSA 208 (265) T ss_dssp --CHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSC T ss_pred --CHHHHHHCCCEEEECCHHHHHHHHHHHHHHHHCCC T ss_conf --89999986992463482899999999999997279 No 81 >3m6n_A RPFF protein; enoyl-COA hydratase, lyase; 1.80A {Xanthomonas campestris PV} PDB: 3m6m_A Probab=96.42 E-value=0.0055 Score=41.65 Aligned_cols=92 Identities=21% Similarity=0.248 Sum_probs=63.0 Q ss_pred HHHCCCCEEEEECCCCCCEEEEEECCCCCEEEEECCCEEECCCHHH-----------HHHHHCCC------CCCCCHHHH Q ss_conf 9862998899856764201111201468525553142110232788-----------78763677------887202159 Q gi|254780820|r 189 LKDAGLPYIVVLTNPTTGGVTASYAMLGDIHLAEPGAEIGFAGRRV-----------IEQTVREK------LPDGFQRSE 251 (284) Q Consensus 189 l~~~~lP~I~vl~~pt~GGv~AS~a~lgDiiiaep~a~igFaG~rV-----------i~~t~~~~------lp~~fqtae 251 (284) +.....|+|+.+.+++.||- ...+...|++|+.+++.+++.--++ ..+.+|.. +--..-+|+ T Consensus 136 ~~~~~kP~IAav~G~a~GgG-~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~ltg~~~~a~ 214 (305) T 3m6n_A 136 GLGARAHSIALVQGNALGGG-FEAALSCHTIIAEEGVMMGLPEVLFDLFPGMGAYSFMCQRISAHLAQKIMLEGNLYSAE 214 (305) T ss_dssp GGGTTCEEEEEECSCEETHH-HHHHHHSSEEEEETTCEEECGGGGGTCCCCSSHHHHHTTTSCHHHHHHHHHHCCEEEHH T ss_pred HHCCCCCEEEEECCCEEHHH-HHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCHHHHHHHHCCHHHHHHHHHCCCCCCHH T ss_conf 75699989999887050899-99999854770534431357043058898853589999860699999999658999899 Q ss_pred HHHHCCCCCEEECHHHHHHHHHHHHHHHHC Q ss_conf 999689835373589999999999999723 Q gi|254780820|r 252 YLVEHGMIDRIVHRHDIPEVVSSLCKILTK 281 (284) Q Consensus 252 ~l~~~G~iD~iv~r~~l~~~i~~ll~il~~ 281 (284) ..++.|+||.||+..++.+....+.+++.+ T Consensus 215 eA~~~Glv~~vv~~~~l~~~~~~~a~~~~~ 244 (305) T 3m6n_A 215 QLLGMGLVDRVVPRGQGVAAVEQVIRESKR 244 (305) T ss_dssp HHHHHTSCSEEECTTCHHHHHHHHHHHHTT T ss_pred HHHHCCCCEEEECHHHHHHHHHHHHHHHCC T ss_conf 998779930871856999999999999748 No 82 >2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} Probab=95.89 E-value=0.039 Score=35.40 Aligned_cols=160 Identities=14% Similarity=0.154 Sum_probs=94.6 Q ss_pred CEEEEEEEEECHHHCCCCCHHHHHHHHHHHHHHHHH-CCCEEEEECCC-----CCCCCCCHHHHH--------HHH-HHH Q ss_conf 414999998330318535778999999999999862-89689997688-----877652124677--------778-899 Q gi|254780820|r 119 DFKLVAVVHEFSFIGGSIGIAAGEAIVKSCERAIAE-KCPLVMFTASG-----GARMQEGILSLM--------QLP-RTT 183 (284) Q Consensus 119 G~~vvv~~~df~F~GGSmG~~~geki~~a~e~A~~~-~~PlI~~~~SG-----GaRMqEG~~sL~--------qMa-kt~ 183 (284) +--|++..+|--= --+++...-+.+..+++.+.++ .+-+|+++..| |+.+.|= ..+. +.. ... T Consensus 15 ~DgIa~itlnrP~-~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~-~~~~~~~~~~~~~~~~~~~ 92 (725) T 2wtb_A 15 GDGVAVITLINPP-VNSLSFDVLYNLKSNYEEALSRNDVKAIVITGAKGRFSGGFDISGF-GEMQKGNVKEPKAGYISID 92 (725) T ss_dssp TTSEEEEEEECTT-TTCCCHHHHHHHHHHHHHHTTCTTCCEEEEEESSSCCBCSSCC-------------CCSSSHHHHH T ss_pred CCCEEEEEECCCC-CCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCEECCCHHHH-HHCCCCCHHHHHHHHHHHH T ss_conf 9938999977857-4779999999999999999658997699998889980307374747-5234677667888888999 Q ss_pred HHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCCEEEEECCCEEECCCHHH-----------HHHHHCCC------CCCC Q ss_conf 999999862998899856764201111201468525553142110232788-----------78763677------8872 Q gi|254780820|r 184 IAINMLKDAGLPYIVVLTNPTTGGVTASYAMLGDIHLAEPGAEIGFAGRRV-----------IEQTVREK------LPDG 246 (284) Q Consensus 184 ~a~~~l~~~~lP~I~vl~~pt~GGv~AS~a~lgDiiiaep~a~igFaG~rV-----------i~~t~~~~------lp~~ 246 (284) ..+.++.....|+|+.+.+.|.||= ..+++.+|++|+.++|.+||.--++ ....+|.. +.-. T Consensus 93 ~~~~~i~~~~kPvIAav~G~a~GGG-~elalacD~ria~~~a~fg~PEv~lGl~P~~gg~~~L~r~iG~~~A~~l~ltg~ 171 (725) T 2wtb_A 93 IITDLLEAARKPSVAAIDGLALGGG-LELAMACHARISAPAAQLGLPELQLGVIPGFGGTQRLPRLVGLTKALEMILTSK 171 (725) T ss_dssp CCCCCCCTSSSCEEEEECSEEETHH-HHHHHHSSEEEECTTCEEECCGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHCC T ss_pred HHHHHHHHCCCCEEEEECCEEEHHH-HHHHHHCCEEEEECCCEEECCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC T ss_conf 9999998199989999887350899-999996898997199799880353084787114578888745788999987267 Q ss_pred CHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHC Q ss_conf 02159999689835373589999999999999723 Q gi|254780820|r 247 FQRSEYLVEHGMIDRIVHRHDIPEVVSSLCKILTK 281 (284) Q Consensus 247 fqtae~l~~~G~iD~iv~r~~l~~~i~~ll~il~~ 281 (284) .-+++..++.|++|.||+..++-+.-..+..-+.+ T Consensus 172 ~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~ 206 (725) T 2wtb_A 172 PVKAEEGHSLGLIDAVVPPAELVTTARRWALDIVG 206 (725) T ss_dssp CEEHHHHHHHTSCSEECCTTTHHHHHHHHHHHHHT T ss_pred CCCHHHHHHCCCCEEECCCHHHHHHHHHHHHHHHH T ss_conf 75456653055402432531589999999998764 No 83 >3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2, protein structure initiative; 2.00A {Acinetobacter baumannii atcc 17978} Probab=95.84 E-value=0.14 Score=31.27 Aligned_cols=147 Identities=10% Similarity=0.088 Sum_probs=87.4 Q ss_pred EEEEEEECHHHCCCCCHHHHHHHHHHHHHHHH-HCCCEEEEECCCCCCCCCCHHH-HHH-----------HHHHHHHHHH Q ss_conf 99999833031853577899999999999986-2896899976888776521246-777-----------7889999999 Q gi|254780820|r 122 LVAVVHEFSFIGGSIGIAAGEAIVKSCERAIA-EKCPLVMFTASGGARMQEGILS-LMQ-----------LPRTTIAINM 188 (284) Q Consensus 122 vvv~~~df~F~GGSmG~~~geki~~a~e~A~~-~~~PlI~~~~SGGaRMqEG~~s-L~q-----------Makt~~a~~~ 188 (284) |+..-+|--=-.-+|+...-+.+..+++.+.+ ..+-+|++..+|+.=--.+-+. +.. .......+.+ T Consensus 15 v~~Itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (266) T 3fdu_A 15 VLTLAINRPEAKNALYGELYLWIAKALDEADQNKDVRVVVLRGAEHDFTAGNDMKDFMGFVQNPNAGPAGQVPPFVLLKS 94 (266) T ss_dssp EEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCBCHHHHHHHHHSCCCSCGGGSHHHHHHHH T ss_pred EEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEECCCHHHHHHHHHCCCHHHHHHHHHHHHHHHH T ss_conf 99999758675789999999999999999975899469999789842515731666542001310344443258999999 Q ss_pred HHHCCCCEEEEECCCCCCEEEEEECCCCCEEEEECCCEEECC-----------CHHHHHHHHCCC------CCCCCHHHH Q ss_conf 986299889985676420111120146852555314211023-----------278878763677------887202159 Q gi|254780820|r 189 LKDAGLPYIVVLTNPTTGGVTASYAMLGDIHLAEPGAEIGFA-----------GRRVIEQTVREK------LPDGFQRSE 251 (284) Q Consensus 189 l~~~~lP~I~vl~~pt~GGv~AS~a~lgDiiiaep~a~igFa-----------G~rVi~~t~~~~------lp~~fqtae 251 (284) +.....|.|+.+.++|.||- ..++...|+.||.+.|.+++. |-......+|.. +--.--+|+ T Consensus 95 i~~~~kPvIaav~G~a~GgG-~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~l~ltg~~~~a~ 173 (266) T 3fdu_A 95 AARLSKPLIIAVKGVAIGIG-VTILLQADLVFADNTALFQIPFVSLGLSPEGGASQLLVKQAGYHKAAELLFTAKKFNAE 173 (266) T ss_dssp HHHCCSCEEEEECSEEETHH-HHGGGGCSEEEECTTCEEECCTTTTTCCCCTTHHHHHHHHHCHHHHHHHHHHCCEECHH T ss_pred HHHCCCCEEEEECCEEEECC-CEEECCCCCCEECCCCEEECCHHHCCCCCCHHHHHHHHHHHCCHHHHHHHCCCCEECHH T ss_conf 99779987998638474645-23221523111147978978625328882110789999995502653211058562288 Q ss_pred HHHHCCCCCEEECHHHHH Q ss_conf 999689835373589999 Q gi|254780820|r 252 YLVEHGMIDRIVHRHDIP 269 (284) Q Consensus 252 ~l~~~G~iD~iv~r~~l~ 269 (284) ..++.|+||.||+..+.. T Consensus 174 eA~~~Glv~~vv~~~~~~ 191 (266) T 3fdu_A 174 TALQAGLVNEIVEDAYAT 191 (266) T ss_dssp HHHHTTSCSEECSCHHHH T ss_pred HHHHCCCEEEECCCHHHH T ss_conf 897789722777848999 No 84 >1yg6_A ATP-dependent CLP protease proteolytic subunit; endopeptidase CLP, caseinolytic protease, protease TI, heat shock protein F21.5, hydrolase; 1.90A {Escherichia coli} SCOP: c.14.1.1 PDB: 1tyf_A 2fzs_A* 1yg8_A 2zl2_A 2zl0_A 2zl4_A 2zl3_A 3ktg_A 3kth_A 3kti_A* 3ktj_A* 3ktk_A* Probab=91.02 E-value=0.81 Score=25.63 Aligned_cols=121 Identities=20% Similarity=0.280 Sum_probs=67.0 Q ss_pred HHCCCCCHHHHHHHHHH-HHHHHH-HCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCEE Q ss_conf 31853577899999999-999986-2896899976888776521246777788999999998629988998567642011 Q gi|254780820|r 131 FIGGSIGIAAGEAIVKS-CERAIA-EKCPLVMFTASGGARMQEGILSLMQLPRTTIAINMLKDAGLPYIVVLTNPTTGGV 208 (284) Q Consensus 131 F~GGSmG~~~geki~~a-~e~A~~-~~~PlI~~~~SGGaRMqEG~~sL~qMakt~~a~~~l~~~~lP~I~vl~~pt~GGv 208 (284) |++|.+....++.++.- .-+..+ ..-|+-++..|-|.- +.+-+ +.++.++..+.|+.++.. |. T Consensus 30 fl~~~I~~~~~~~~i~~l~~l~~~~~~~~I~l~InSpGG~----v~~gl------~i~D~i~~~~~~V~Tv~~-----G~ 94 (193) T 1yg6_A 30 FLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGV----ITAGM------SIYDTMQFIKPDVSTICM-----GQ 94 (193) T ss_dssp EEESSBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECCBC----HHHHH------HHHHHHHHSSSCEEEEEE-----EE T ss_pred EECCEECHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCC----HHHHH------HHHHHHHHCCCCEEEEEE-----HH T ss_conf 8898864688999999999998049999979999789962----75799------999998427999999982-----49 Q ss_pred EEEEC----CCCC--EEEEECCCEE-------ECCCHHH-HH------------------HHHC-------CCCC-CCCH Q ss_conf 11201----4685--2555314211-------0232788-78------------------7636-------7788-7202 Q gi|254780820|r 209 TASYA----MLGD--IHLAEPGAEI-------GFAGRRV-IE------------------QTVR-------EKLP-DGFQ 248 (284) Q Consensus 209 ~AS~a----~lgD--iiiaep~a~i-------gFaG~rV-i~------------------~t~~-------~~lp-~~fq 248 (284) .||-| +.|+ --.+-|.|.+ |+.|+.. ++ +-+| +++. +-|- T Consensus 95 aaS~a~lIl~~G~~g~R~~~pns~iMiHq~s~~~~G~~~di~~~~~el~~~~~~i~~i~a~~tg~~~~~i~~~~~rd~~l 174 (193) T 1yg6_A 95 AASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTERDRFL 174 (193) T ss_dssp EETHHHHHHHTSCTTCEEECTTCEEEECCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHTSSCEEE T ss_pred HHHHHHHHHHCCCCCCEEECCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCC T ss_conf 99899999975999974576653776225664657549999999999999999999999999793999999872478337 Q ss_pred HHHHHHHCCCCCEEECHH Q ss_conf 159999689835373589 Q gi|254780820|r 249 RSEYLVEHGMIDRIVHRH 266 (284) Q Consensus 249 tae~l~~~G~iD~iv~r~ 266 (284) +|+..++.|+||.|++.+ T Consensus 175 ~a~EAl~~GiiD~Ii~~~ 192 (193) T 1yg6_A 175 SAPEAVEYGLVDSILTHR 192 (193) T ss_dssp EHHHHHHHTSSSEECCCC T ss_pred CHHHHHHCCCCCEEECCC T ss_conf 799999809985893569 No 85 >2cby_A ATP-dependent CLP protease proteolytic subunit 1; serine protease, endopeptidase, ATP-dependent protease, hydrolase; 2.6A {Mycobacterium tuberculosis} SCOP: c.14.1.1 PDB: 2c8t_A 2ce3_A Probab=90.99 E-value=0.22 Score=29.87 Aligned_cols=125 Identities=18% Similarity=0.242 Sum_probs=73.7 Q ss_pred HHCCCCCHHHHHHHHHHHHH--HHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCEE Q ss_conf 31853577899999999999--9862896899976888776521246777788999999998629988998567642011 Q gi|254780820|r 131 FIGGSIGIAAGEAIVKSCER--AIAEKCPLVMFTASGGARMQEGILSLMQLPRTTIAINMLKDAGLPYIVVLTNPTTGGV 208 (284) Q Consensus 131 F~GGSmG~~~geki~~a~e~--A~~~~~PlI~~~~SGGaRMqEG~~sL~qMakt~~a~~~l~~~~lP~I~vl~~pt~GGv 208 (284) |++|-+...+++.++.-+-+ +.....|+-++..|.|--+..|. +-++.++..+.|..++.. |. T Consensus 31 fl~~~Id~~~a~~ii~~L~~L~~~~~~k~I~l~InS~GG~v~~gl----------aI~d~i~~~~~~V~ti~~-----G~ 95 (208) T 2cby_A 31 FLGSEVNDEIANRLCAQILLLAAEDASKDISLYINSPGGSISAGM----------AIYDTMVLAPCDIATYAM-----GM 95 (208) T ss_dssp EECSCBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECCBCHHHHH----------HHHHHHHHCSSCEEEEEE-----EE T ss_pred EECCEECHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHH----------HHHHHHHHCCCCEEEEEC-----CC T ss_conf 989836789999999999997451889980788679988787899----------999999865998799963-----63 Q ss_pred EEEEC----CCCC--EEEEECCCEEE-------CCCHH---------------HH----HHHHC-------CCC-CCCCH Q ss_conf 11201----4685--25553142110-------23278---------------87----87636-------778-87202 Q gi|254780820|r 209 TASYA----MLGD--IHLAEPGAEIG-------FAGRR---------------VI----EQTVR-------EKL-PDGFQ 248 (284) Q Consensus 209 ~AS~a----~lgD--iiiaep~a~ig-------FaG~r---------------Vi----~~t~~-------~~l-p~~fq 248 (284) +||-| +-|+ --++-|+|.+. +.|.. .+ .+-+| +++ -+-|- T Consensus 96 aaS~aslIl~aG~kg~R~~~pns~iMiHq~~~~~~G~~~di~~~a~el~~~~~~i~~iya~~Tg~~~e~I~~~~~rd~~l 175 (208) T 2cby_A 96 AASMGEFLLAAGTKGKRYALPHARILMHQPLGGVTGSAADIAIQAEQFAVIKKEMFRLNAEFTGQPIERIEADSDRDRWF 175 (208) T ss_dssp EETHHHHHHHTSCTTCEEECTTCEEECCCC----------CHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHTTCEE T ss_pred CCCHHHHHHHCCCCCCEEECCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCC T ss_conf 54389999867898956887986278888873667777689999999999999999999999795999999860688434 Q ss_pred HHHHHHHCCCCCEEECHHHHHH Q ss_conf 1599996898353735899999 Q gi|254780820|r 249 RSEYLVEHGMIDRIVHRHDIPE 270 (284) Q Consensus 249 tae~l~~~G~iD~iv~r~~l~~ 270 (284) +|+-.++.|+||.|+.+.++.. T Consensus 176 sa~EAl~yGliD~Ii~~~~~~~ 197 (208) T 2cby_A 176 TAAEALEYGFVDHIITRAHVNG 197 (208) T ss_dssp EHHHHHHHTSCSEECSCC---- T ss_pred CHHHHHHCCCCCEEECCCCCCC T ss_conf 5999998499879835798996 No 86 >3p2l_A ATP-dependent CLP protease proteolytic subunit; structural genomics, center for structural genomics of infec diseases, csgid; 2.29A {Francisella tularensis subsp} Probab=90.19 E-value=0.52 Score=27.06 Aligned_cols=123 Identities=18% Similarity=0.304 Sum_probs=71.1 Q ss_pred HHCCCCCHHHHHHHHHHHHHHH-H-HCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCEE Q ss_conf 3185357789999999999998-6-2896899976888776521246777788999999998629988998567642011 Q gi|254780820|r 131 FIGGSIGIAAGEAIVKSCERAI-A-EKCPLVMFTASGGARMQEGILSLMQLPRTTIAINMLKDAGLPYIVVLTNPTTGGV 208 (284) Q Consensus 131 F~GGSmG~~~geki~~a~e~A~-~-~~~PlI~~~~SGGaRMqEG~~sL~qMakt~~a~~~l~~~~lP~I~vl~~pt~GGv 208 (284) |++|-+...+++.++.-+.+.. + ..-|+-++..|-|.-+.+|.. -++.++..+.|+.++.. |. T Consensus 34 ~l~g~I~~~~~~~~i~~l~~l~~~~~~~~I~l~INSpGG~v~~g~a----------i~d~i~~~~~~V~Tv~~-----G~ 98 (201) T 3p2l_A 34 FLNGEVNDHSANLVIAQLLFLESEDPDKDIYFYINSPGGMVTAGMG----------VYDTMQFIKPDVSTICI-----GL 98 (201) T ss_dssp EEESCBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECCBCHHHHHH----------HHHHHHHSSSCEEEEEE-----EE T ss_pred EECCEECHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHH----------HHHHHHHCCCCEEEEEE-----CC T ss_conf 9898686899999999999987336889869998189987889999----------99999847999899994-----52 Q ss_pred EEEEC----CCC--CEEEEECCCEE-------ECCCHHH-H------------------HHHHC-------CCCC-CCCH Q ss_conf 11201----468--52555314211-------0232788-7------------------87636-------7788-7202 Q gi|254780820|r 209 TASYA----MLG--DIHLAEPGAEI-------GFAGRRV-I------------------EQTVR-------EKLP-DGFQ 248 (284) Q Consensus 209 ~AS~a----~lg--Diiiaep~a~i-------gFaG~rV-i------------------~~t~~-------~~lp-~~fq 248 (284) .||-| +-| +--.+-|.|.+ ++.|+.. + .+.+| +++- +-|- T Consensus 99 aaS~a~lil~aG~k~~R~~~pns~iMiHq~~~~~~G~~~di~~~~~el~~~~~~i~~i~a~~tg~~~~~i~~~~~rd~~l 178 (201) T 3p2l_A 99 AASMGSLLLAGGAKGKRYSLPSSQIMIHQPLGGFRGQASDIEIHAKNILRIKDRLNKVLAHHTGQDLETIVKDTDRDNFM 178 (201) T ss_dssp EETHHHHHHHTSSTTCEEECTTCEEEECCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHTSSCEEE T ss_pred HHHHHHHHHHCCCCCEEECCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCC T ss_conf 87679999967998868757470467715677888579999999999999999999999999795999999861478435 Q ss_pred HHHHHHHCCCCCEEEC-HHHH Q ss_conf 1599996898353735-8999 Q gi|254780820|r 249 RSEYLVEHGMIDRIVH-RHDI 268 (284) Q Consensus 249 tae~l~~~G~iD~iv~-r~~l 268 (284) +|+-.++.|+||.|++ |+++ T Consensus 179 ta~EAleyGliD~Ii~~~~~~ 199 (201) T 3p2l_A 179 MADEAKAYGLIDHVIESREAI 199 (201) T ss_dssp EHHHHHHHTSCSEECCCSCC- T ss_pred CHHHHHHCCCCCEEECCCHHH T ss_conf 799999849984970555100 No 87 >2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4 Probab=89.47 E-value=0.09 Score=32.71 Aligned_cols=37 Identities=5% Similarity=0.066 Sum_probs=29.0 Q ss_pred CCCCEECCCCCCEEEHHHHHHHCCCCCCCCCCEECCHH Q ss_conf 46010566768722178898633838899896243799 Q gi|254780820|r 23 ENLWVKCPETGAMVYHKDLKENQWVISSSDFHMKIPAK 60 (284) Q Consensus 23 ~~lW~kCp~C~~~i~~~~l~~n~~VCp~C~~H~rl~ar 60 (284) +..+.-||+|+..+.... ..+..+||.|++.|=..-+ T Consensus 22 ~~~~~~CP~C~~~~~~~~-~~~~~~C~~C~~~fC~~C~ 58 (86) T 2ct7_A 22 DPKFLWCAQCSFGFIYER-EQLEATCPQCHQTFCVRCK 58 (86) T ss_dssp CCCEECCSSSCCCEECCC-SCSCEECTTTCCEECSSSC T ss_pred CCCCCCCCCCCCEEEECC-CCCEEEECCCCCEECCCCC T ss_conf 889749989994488679-9998884999994561409 No 88 >2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5 Probab=89.29 E-value=0.034 Score=35.79 Aligned_cols=29 Identities=10% Similarity=0.139 Sum_probs=21.4 Q ss_pred CEECCCCCCEEEHHHHHHHCCCCCCCCCCEE Q ss_conf 1056676872217889863383889989624 Q gi|254780820|r 26 WVKCPETGAMVYHKDLKENQWVISSSDFHMK 56 (284) Q Consensus 26 W~kCp~C~~~i~~~~l~~n~~VCp~C~~H~r 56 (284) --.||+|++..-.. ...++|||.|+|-.. T Consensus 27 lP~CP~C~seytY~--dg~~~vCPeC~hEW~ 55 (138) T 2akl_A 27 LPPCPQCNSEYTYE--DGALLVCPECAHEWS 55 (138) T ss_dssp SCCCTTTCCCCCEE--CSSSEEETTTTEEEC T ss_pred CCCCCCCCCCCEEC--CCCEEECCCCCCCCC T ss_conf 98898889902373--799888987637378 No 89 >2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 1nwy_Z* 1nwx_Z* 1xbp_Z* 1pnu_Z ... Probab=88.32 E-value=0.27 Score=29.20 Aligned_cols=23 Identities=9% Similarity=0.356 Sum_probs=18.9 Q ss_pred CEECCCCCCEEEHHHHHHHCCCCCCCCCC Q ss_conf 10566768722178898633838899896 Q gi|254780820|r 26 WVKCPETGAMVYHKDLKENQWVISSSDFH 54 (284) Q Consensus 26 W~kCp~C~~~i~~~~l~~n~~VCp~C~~H 54 (284) -+.||+||+... -..|||+|||+ T Consensus 30 l~~C~~cG~~~~------~H~vc~~CG~Y 52 (60) T 2zjr_Z 30 LTECPQCHGKKL------SHHICPNCGYY 52 (60) T ss_dssp CEECTTTCCEEC------TTBCCTTTCBS T ss_pred EEECCCCCCCCC------CCEECCCCCCC T ss_conf 168899998636------72677989809 No 90 >2f6i_A ATP-dependent CLP protease, putative; structural genomics, structural genomics consortium, SGC, hydrolase; 2.45A {Plasmodium falciparum} SCOP: c.14.1.1 Probab=87.80 E-value=0.87 Score=25.41 Aligned_cols=120 Identities=14% Similarity=0.232 Sum_probs=64.2 Q ss_pred HHCCCCCHHHHHHHHHHHH-HHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCEEE Q ss_conf 3185357789999999999-998628968999768887765212467777889999999986299889985676420111 Q gi|254780820|r 131 FIGGSIGIAAGEAIVKSCE-RAIAEKCPLVMFTASGGARMQEGILSLMQLPRTTIAINMLKDAGLPYIVVLTNPTTGGVT 209 (284) Q Consensus 131 F~GGSmG~~~geki~~a~e-~A~~~~~PlI~~~~SGGaRMqEG~~sL~qMakt~~a~~~l~~~~lP~I~vl~~pt~GGv~ 209 (284) |++|-+...++..++.-+- +..++.-|+.++..|.|.-+.+|. +-++.++....|..++.. |.. T Consensus 43 fl~g~Id~~~a~~ii~~Ll~L~~~~~~~I~l~INS~GG~v~~g~----------aIyd~i~~~~~~V~Tv~~-----G~a 107 (215) T 2f6i_A 43 YLTDEINKKTADELISQLLYLDNINHNDIKIYINSPGGSINEGL----------AILDIFNYIKSDIQTISF-----GLV 107 (215) T ss_dssp EECSCBCHHHHHHHHHHHHHHHHHCCSCEEEEEEECCBCHHHHH----------HHHHHHHHSSSCEEEEEE-----EEE T ss_pred EECCEECHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHH----------HHHHHHHHCCCCEEEEEE-----CCC T ss_conf 98981278999999999999755899785999989997688999----------999999866998599997-----885 Q ss_pred EEEC----CCCC--EEEEECCCEEE-------CCCHHH-------------------HHHHHCC-------CCC-CCCHH Q ss_conf 1201----4685--25553142110-------232788-------------------7876367-------788-72021 Q gi|254780820|r 210 ASYA----MLGD--IHLAEPGAEIG-------FAGRRV-------------------IEQTVRE-------KLP-DGFQR 249 (284) Q Consensus 210 AS~a----~lgD--iiiaep~a~ig-------FaG~rV-------------------i~~t~~~-------~lp-~~fqt 249 (284) ||-| +.|+ ..++-|.|.+. +.|+.. ..+-++. .+. +-+-+ T Consensus 108 aS~as~Il~aG~kg~R~~~pns~iMiHq~s~~~~G~~~di~~~~~el~~~~~~i~~~~a~~tg~~~e~I~~~~~~d~~ls 187 (215) T 2f6i_A 108 ASMASVILASGKKGKRKSLPNCRIMIHQPLGNAFGHPQDIEIQTKEILYLKKLLYHYLSSFTNQTVETIEKDSDRDYYMN 187 (215) T ss_dssp CHHHHHHHHTSCTTCEEECTTCEEESSCTTCSCC--------CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHTTCEEC T ss_pred HHHHHHHHHCCCCCCEEECCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCC T ss_conf 04568888607888468347756997368767788757999999999999999999999882999999998715881504 Q ss_pred HHHHHHCCCCCEEECH Q ss_conf 5999968983537358 Q gi|254780820|r 250 SEYLVEHGMIDRIVHR 265 (284) Q Consensus 250 ae~l~~~G~iD~iv~r 265 (284) |+-.++-|+||.|++. T Consensus 188 a~EA~e~GliD~Ii~~ 203 (215) T 2f6i_A 188 ALEAKQYGIIDEVIET 203 (215) T ss_dssp HHHHHHHTSCSEECCC T ss_pred HHHHHHCCCCCEECCC T ss_conf 9999983998698216 No 91 >1y7o_A ATP-dependent CLP protease proteolytic subunit; hydrolase; 2.51A {Streptococcus pneumoniae} SCOP: c.14.1.1 Probab=87.67 E-value=0.49 Score=27.27 Aligned_cols=123 Identities=15% Similarity=0.296 Sum_probs=68.7 Q ss_pred HHCCCCCHHHHHHHHHHHH-HH-HHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCEE Q ss_conf 3185357789999999999-99-862896899976888776521246777788999999998629988998567642011 Q gi|254780820|r 131 FIGGSIGIAAGEAIVKSCE-RA-IAEKCPLVMFTASGGARMQEGILSLMQLPRTTIAINMLKDAGLPYIVVLTNPTTGGV 208 (284) Q Consensus 131 F~GGSmG~~~geki~~a~e-~A-~~~~~PlI~~~~SGGaRMqEG~~sL~qMakt~~a~~~l~~~~lP~I~vl~~pt~GGv 208 (284) |++|-+...+++.++.-+- +. .+...|+.++..|.|.-+.+|.. -++.++..+.|+.++.. |. T Consensus 49 fL~g~Id~~~a~~iia~Ll~l~~~d~~k~I~l~INS~GG~v~~gla----------I~D~m~~~~~~V~Ti~~-----G~ 113 (218) T 1y7o_A 49 MLTGPVEDNMANSVIAQLLFLDAQDSTKDIYLYVNTPGGSVSAGLA----------IVDTMNFIKADVQTIVM-----GM 113 (218) T ss_dssp EEESCBCHHHHHHHHHHHHHHHHHCTTSCEEEEEEECCBCHHHHHH----------HHHHHHHSSSCEEEEEE-----EE T ss_pred EECCEECHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHH----------HHHHHHHCCCCEEEEEE-----EE T ss_conf 9898986899999999999888519998789998289786878999----------99999856998799996-----25 Q ss_pred EEEEC----CCC--CEEEEECCCEE-------ECCCHHH-----------------HH----HHHC-------CCCC-CC Q ss_conf 11201----468--52555314211-------0232788-----------------78----7636-------7788-72 Q gi|254780820|r 209 TASYA----MLG--DIHLAEPGAEI-------GFAGRRV-----------------IE----QTVR-------EKLP-DG 246 (284) Q Consensus 209 ~AS~a----~lg--Diiiaep~a~i-------gFaG~rV-----------------i~----~t~~-------~~lp-~~ 246 (284) .||-| +-| +-.++-|.|++ |+.|... +. +.+| +++. +- T Consensus 114 AaS~aslIl~aG~kg~R~~~pns~iMiHqp~~~~~G~~~~~~~~~~~~el~~~~~~i~~i~a~~Tg~~~~~I~~~~~rd~ 193 (218) T 1y7o_A 114 AASMGTVIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAPEHLLKTRNTLEKILAENSGQSMEKVHADAERDN 193 (218) T ss_dssp EETHHHHHHTTSCTTCEEECTTCEEECCCCC--------------CHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHSCC T ss_pred ECCHHHHHHHCCCCCCEEECHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCE T ss_conf 54435689871688846874558888378855655553177999999999999999999999887979999998621790 Q ss_pred CHHHHHHHHCCCCCEEECHHHH Q ss_conf 0215999968983537358999 Q gi|254780820|r 247 FQRSEYLVEHGMIDRIVHRHDI 268 (284) Q Consensus 247 fqtae~l~~~G~iD~iv~r~~l 268 (284) |-+|+-.++.|+||.|++.+++ T Consensus 194 ~lsa~EAleyGliD~Ii~~~~~ 215 (218) T 1y7o_A 194 WMSAQETLEYGFIDEIMANNSL 215 (218) T ss_dssp CBCHHHHHHHTSCSEECCCC-- T ss_pred EECHHHHHHCCCCCEECCCCCC T ss_conf 6539999985998698246888 No 92 >2j01_5 50S ribosomal protein L32; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} SCOP: g.41.8.5 PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ... Probab=87.41 E-value=0.13 Score=31.58 Aligned_cols=23 Identities=30% Similarity=0.406 Sum_probs=18.8 Q ss_pred CEECCCCCCEEEHHHHHHHCCCCCCCCCC Q ss_conf 10566768722178898633838899896 Q gi|254780820|r 26 WVKCPETGAMVYHKDLKENQWVISSSDFH 54 (284) Q Consensus 26 W~kCp~C~~~i~~~~l~~n~~VCp~C~~H 54 (284) -++||+||+... ...|||+|||+ T Consensus 30 l~~C~~CG~~~~------pHrvC~~CG~Y 52 (60) T 2j01_5 30 LVPCPECKAMKP------PHTVCPECGYY 52 (60) T ss_dssp CBCCSSSSSCBC------TTCBCTTTCCS T ss_pred EEECCCCCCEEC------CCEECCCCCCC T ss_conf 468999997026------73687989819 No 93 >3gtx_A Organophosphorus hydrolase; mutant, amidohydrolase, alpha-beta barrel; HET: KCX; 1.62A {Deinococcus radiodurans} PDB: 2zc1_A* 3gti_A* 3gu9_A* 3gtf_A* 3gth_A* 3gu2_A* 3gu1_A* 3fdk_A* 3htw_A* Probab=84.13 E-value=1.3 Score=24.12 Aligned_cols=106 Identities=16% Similarity=0.224 Sum_probs=62.4 Q ss_pred CCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC-EEEEECCCCCCEEEEEECC Q ss_conf 577899999999999986289689997688877652124677778899999999862998-8998567642011112014 Q gi|254780820|r 136 IGIAAGEAIVKSCERAIAEKCPLVMFTASGGARMQEGILSLMQLPRTTIAINMLKDAGLP-YIVVLTNPTTGGVTASYAM 214 (284) Q Consensus 136 mG~~~geki~~a~e~A~~~~~PlI~~~~SGGaRMqEG~~sL~qMakt~~a~~~l~~~~lP-~I~vl~~pt~GGv~AS~a~ 214 (284) +...+-+-+..+++.|.+.++|+++-+..+ ++ ++ ..+..|.+.|++ --.++.+ |..+....+. T Consensus 167 ~t~~E~kvfra~a~aa~etg~PI~iHt~~~--~~-----a~-------e~l~iL~e~g~~~~rvvi~H-~d~~~d~~~~- 230 (339) T 3gtx_A 167 ITPYEQLFFRAAARVQRETGVPIITHTQEG--QQ-----GP-------QQAELLTSLGADPARIMIGH-MDGNTDPAYH- 230 (339) T ss_dssp CCHHHHHHHHHHHHHHHHHCCCEEEECSTT--CC-----HH-------HHHHHHHHTTCCGGGEEECC-GGGCCCHHHH- T ss_pred CCHHHHHHHHHHHHHHHHHCCCEEEECCCC--CC-----CH-------HHHHHHHHCCCCCCCEEEEE-CCCCCCHHHH- T ss_conf 998999999999999998699679736876--55-----78-------99999987699964369980-4786789999- Q ss_pred CCCEEEEECCCEEECCCHHHHHHHHCCCCCCCCHHHHH---HHHCCCCCEEE Q ss_conf 68525553142110232788787636778872021599---99689835373 Q gi|254780820|r 215 LGDIHLAEPGAEIGFAGRRVIEQTVREKLPDGFQRSEY---LVEHGMIDRIV 263 (284) Q Consensus 215 lgDiiiaep~a~igFaG~rVi~~t~~~~lp~~fqtae~---l~~~G~iD~iv 263 (284) --+++.|+.|+|.|-.- + -.-..|.|+.+++. +.+.|..|.|+ T Consensus 231 ---~~~l~~G~~l~fD~~g~-~--~~~~~p~d~~r~~~l~~lv~~g~~drIL 276 (339) T 3gtx_A 231 ---RETLRHGVSIAFDRIGL-Q--GMVGTPTDAERLSVLTTLLGEGYADRLL 276 (339) T ss_dssp ---HHHHTTTCEEEECCTTC-C--SSTTCCCHHHHHHHHHHHHHTTCGGGEE T ss_pred ---HHHHHCCCEEEECCCCC-C--CCCCCCCHHHHHHHHHHHHHHCCCCEEE T ss_conf ---99997693899755655-4--6667984788899999999857964099 No 94 >1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubredoxin-like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A Probab=83.50 E-value=0.13 Score=31.62 Aligned_cols=27 Identities=11% Similarity=0.234 Sum_probs=19.2 Q ss_pred CCCCEECCCCCCEEEHHHHHHHCCCCCCCCC Q ss_conf 4601056676872217889863383889989 Q gi|254780820|r 23 ENLWVKCPETGAMVYHKDLKENQWVISSSDF 53 (284) Q Consensus 23 ~~lW~kCp~C~~~i~~~~l~~n~~VCp~C~~ 53 (284) +-.|+ |+.||-+...++ .-.+||-|++ T Consensus 153 ~~~~~-C~~CG~i~~g~~---~p~~CP~C~~ 179 (191) T 1lko_A 153 ATKWR-CRNCGYVHEGTG---APELCPACAH 179 (191) T ss_dssp EEEEE-ETTTCCEEEEEE---CCSBCTTTCC T ss_pred CCEEE-CCCCCCCCCCCC---CCCCCCCCCC T ss_conf 84578-999986012899---9885979999 No 95 >1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A Probab=83.41 E-value=0.11 Score=32.16 Aligned_cols=35 Identities=14% Similarity=0.309 Sum_probs=26.3 Q ss_pred CCCCCCCCCEECCCCCCEEEHHHHHHHCCCCCCCCCC Q ss_conf 2247746010566768722178898633838899896 Q gi|254780820|r 18 RRAIPENLWVKCPETGAMVYHKDLKENQWVISSSDFH 54 (284) Q Consensus 18 kk~ip~~lW~kCp~C~~~i~~~~l~~n~~VCp~C~~H 54 (284) +.+..+- ++||.|++.....|-..-..||..||+= T Consensus 5 ~~~~~~~--~~Cp~Cgs~~iv~D~~~Ge~vC~~CG~V 39 (58) T 1dl6_A 5 RLDALPR--VTCPNHPDAILVEDYRAGDMICPECGLV 39 (58) T ss_dssp SCCCCSC--CSBTTBSSSCCEECSSSCCEECTTTCCE T ss_pred CCCCCCC--CCCCCCCCCCEEEECCCCEEECCCCCCE T ss_conf 2325675--5896987987778888991872789989 No 96 >3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Probab=83.17 E-value=0.17 Score=30.71 Aligned_cols=31 Identities=16% Similarity=0.219 Sum_probs=22.4 Q ss_pred EECCCCCCEEEHH---HHHHHCCCCCCCCCCEEC Q ss_conf 0566768722178---898633838899896243 Q gi|254780820|r 27 VKCPETGAMVYHK---DLKENQWVISSSDFHMKI 57 (284) Q Consensus 27 ~kCp~C~~~i~~~---~l~~n~~VCp~C~~H~rl 57 (284) .=||.|+.++|-+ +-....++|+.|+|-... T Consensus 5 ~FCp~C~nmL~~~~~~~~~~l~~~C~~C~y~~~~ 38 (113) T 3h0g_I 5 QYCIECNNMLYPREDKVDRVLRLACRNCDYSEIA 38 (113) T ss_dssp CCCSSSCCCCEECCCTTTCCCCEECSSSCCEECC T ss_pred CCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCC T ss_conf 8774657466364689886888989999831006 No 97 >3k2g_A Resiniferatoxin-binding, phosphotriesterase- related protein; TIM barrel, binuclear zinc, protein structure initiative II (PSI II); 1.80A {Rhodobacter sphaeroides 2} Probab=83.07 E-value=0.34 Score=28.42 Aligned_cols=110 Identities=15% Similarity=0.183 Sum_probs=62.5 Q ss_pred CCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC--EEEEECCCCCCEEEEEEC Q ss_conf 577899999999999986289689997688877652124677778899999999862998--899856764201111201 Q gi|254780820|r 136 IGIAAGEAIVKSCERAIAEKCPLVMFTASGGARMQEGILSLMQLPRTTIAINMLKDAGLP--YIVVLTNPTTGGVTASYA 213 (284) Q Consensus 136 mG~~~geki~~a~e~A~~~~~PlI~~~~SGGaRMqEG~~sL~qMakt~~a~~~l~~~~lP--~I~vl~~pt~GGv~AS~a 213 (284) +....-+-+..+++.|.+.++|+++-+..++ ++ ++ ..+..|++.|++ .+++ .+ |..+. .++. T Consensus 184 ~t~~E~kv~rA~a~aa~etg~PI~iHt~~~~-~~-----~~-------e~l~il~~~Gvd~~~vvi-~H-~d~~~-~d~~ 247 (364) T 3k2g_A 184 FTAEEEKSLRGAARAQVRTGLPLMVHLPGWF-RL-----AH-------RVLDLVEEEGADLRHTVL-CH-MNPSH-MDPV 247 (364) T ss_dssp CCHHHHHHHHHHHHHHHHHCCCEEEECCTTS-CC-----HH-------HHHHHHHHTTCCGGGEEE-CC-CGGGT-TCHH T ss_pred CCHHHHHHHHHHHHHHHHHCCCEEEECCCCC-CH-----HH-------HHHHHHHHCCCCCCCEEE-EE-CCCCC-CCHH T ss_conf 9989999999999999996896573066654-20-----89-------999999981999422589-84-78999-9999 Q ss_pred CCCCEEEEECCCEEECCCHHHHHHH--HCCCCCCCCHHHH---HHHHCCCCCEEE Q ss_conf 4685255531421102327887876--3677887202159---999689835373 Q gi|254780820|r 214 MLGDIHLAEPGAEIGFAGRRVIEQT--VREKLPDGFQRSE---YLVEHGMIDRIV 263 (284) Q Consensus 214 ~lgDiiiaep~a~igFaG~rVi~~t--~~~~lp~~fqtae---~l~~~G~iD~iv 263 (284) .+ --+++.|+.|+|.+-....-. .+-+.|.++++++ .+.++|+.|.|+ T Consensus 248 ~~--~~ll~~G~~l~fD~~G~~~~~~~~~~~~p~d~~r~~~i~~lv~~G~~drIL 300 (364) T 3k2g_A 248 YQ--ATLAQRGAFLEFDMIGMDFFYADQGVQCPSDDEVARAILGLADHGYLDRIL 300 (364) T ss_dssp HH--HHHHHHTCEEEECCTTCCCEETTTTEECCCHHHHHHHHHHHHHTTCGGGEE T ss_pred HH--HHHHHCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEE T ss_conf 99--999976939998415643346653445663678999999999857877599 No 98 >3ofq_0 50S ribosomal protein L32; protein biosynthesis, ribosomes, RNA, tRNA, transfer, antibi EXIT, peptidyl, ribosomal subunit, large; 3.10A {Escherichia coli} PDB: 1p85_Z 1p86_Z 2awb_0 2aw4_0 2i2v_0 2j28_0 2i2t_0* 2qao_0* 2qba_0* 2qbc_0* 2qbe_0 2qbg_0 2qbi_0* 2qbk_0* 2qov_0 2qox_0 2qoz_0* 2qp1_0* 2rdo_0 2vhm_0 ... Probab=81.96 E-value=0.44 Score=27.58 Aligned_cols=22 Identities=5% Similarity=0.081 Sum_probs=18.1 Q ss_pred CEECCCCCCEEEHHHHHHHCCCCCCCCCC Q ss_conf 10566768722178898633838899896 Q gi|254780820|r 26 WVKCPETGAMVYHKDLKENQWVISSSDFH 54 (284) Q Consensus 26 W~kCp~C~~~i~~~~l~~n~~VCp~C~~H 54 (284) -..||+||++.. ...||| |||+ T Consensus 27 l~~C~~CG~~~~------pH~vC~-cG~Y 48 (56) T 3ofq_0 27 LSVDKTSGEKHL------RHHITA-DGYY 48 (56) T ss_dssp CBCCSSSCCCBC------SSSCCT-TSBC T ss_pred CCCCCCCCCCCC------CCEECC-CCCC T ss_conf 226889998605------857889-9889 No 99 >1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ... Probab=80.39 E-value=0.29 Score=28.89 Aligned_cols=32 Identities=9% Similarity=0.229 Sum_probs=23.1 Q ss_pred EECCCCCCEEEHHH---HHHHCCCCCCCCCCEECC Q ss_conf 05667687221788---986338388998962437 Q gi|254780820|r 27 VKCPETGAMVYHKD---LKENQWVISSSDFHMKIP 58 (284) Q Consensus 27 ~kCp~C~~~i~~~~---l~~n~~VCp~C~~H~rl~ 58 (284) .=||.|+.++|-++ -....++|+.|+|-..+. T Consensus 5 ~FCp~C~nlL~~~~~~~~~~l~~~C~~C~y~~~~~ 39 (122) T 1twf_I 5 RFCRDCNNMLYPREDKENNRLLFECRTCSYVEEAG 39 (122) T ss_dssp CBCSSSCCBCEEEEETTTTEEEEECSSSSCEEECS T ss_pred CCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCC T ss_conf 87744373777255788877589889998851257 No 100 >3cwc_A Putative glycerate kinase 2; structural genomics, center for structural genomics of infectious diseases, csgid, IDP122, transferase; 2.23A {Salmonella typhimurium LT2} Probab=79.76 E-value=1.7 Score=23.29 Aligned_cols=23 Identities=13% Similarity=0.167 Sum_probs=10.1 Q ss_pred HHHHHHHHHHHHHHCCCEEEEEC Q ss_conf 99999999999862896899976 Q gi|254780820|r 141 GEAIVKSCERAIAEKCPLVMFTA 163 (284) Q Consensus 141 geki~~a~e~A~~~~~PlI~~~~ 163 (284) |.-.....++|.+.+.|+|.++. T Consensus 305 GK~p~~Va~~A~~~~vPviai~G 327 (383) T 3cwc_A 305 GKVPIGVANIAKRYNKPVIGIAG 327 (383) T ss_dssp CHHHHHHHHHHHHTTCCEEEEEE T ss_pred CCCHHHHHHHHHHHCCCEEEEEC T ss_conf 86299999999981999999966 No 101 >2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus} Probab=79.45 E-value=1.3 Score=24.10 Aligned_cols=43 Identities=21% Similarity=0.308 Sum_probs=26.7 Q ss_pred CEECCCCCCEEEHHHHHH------------------------HCCCCCCCCCCEE---C---CHHHHHHHHCC Q ss_conf 105667687221788986------------------------3383889989624---3---79999998455 Q gi|254780820|r 26 WVKCPETGAMVYHKDLKE------------------------NQWVISSSDFHMK---I---PAKERLKFLFD 68 (284) Q Consensus 26 W~kCp~C~~~i~~~~l~~------------------------n~~VCp~C~~H~r---l---~areRi~~l~D 68 (284) ..|||-||+.+--.||-+ .-+-||.||--|. + .+..-+++|-| T Consensus 8 MakCPlCG~~ldW~eLieqML~~en~~ei~kDre~Fl~~~~~F~FKCP~CGEEFyG~~Lp~~EaeKVFeLLNd 80 (95) T 2k5c_A 8 MAKCPICGSPLKWEELIEEMLIIENFEEIVKDRERFLAQVEEFVFKCPVCGEEFYGKTLPRREAEKVFELLND 80 (95) T ss_dssp CEECSSSCCEECHHHHHHHSTTCSTHHHHTTCHHHHHHHHHHSEEECTTTCCEEETTSSCTTTHHHHHHHHHS T ss_pred HHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCHHHHHHHHHHHHH T ss_conf 4238867882679999999986520999986199999999877000886657887246887789999999997 No 102 >3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* Probab=78.97 E-value=0.23 Score=29.70 Aligned_cols=68 Identities=18% Similarity=0.120 Sum_probs=32.4 Q ss_pred EECCCCCCEEE-----------HH---HHH-HHCCCCCCCCCCEECCHHHHHHHHCCC-CCCCCCCCCCCCCHHCCCCCC Q ss_conf 05667687221-----------78---898-633838899896243799999984556-542013345687020186764 Q gi|254780820|r 27 VKCPETGAMVY-----------HK---DLK-ENQWVISSSDFHMKIPAKERLKFLFDN-AKYCLLDQPQVCQDPLKFRDN 90 (284) Q Consensus 27 ~kCp~C~~~i~-----------~~---~l~-~n~~VCp~C~~H~rl~areRi~~l~D~-gsf~Ei~~~~~~~DPL~F~d~ 90 (284) .+||-|++..+ +- .++ ...+||+.||--+- ++...-...-.- ..+.+.+..+. T Consensus 3 M~C~~Cg~~~~~~~~~~~~~~~kG~~~~i~~~~~~~C~~Cge~~~-~~~~~~~~~~~~~~~~~~~~~~~~---------- 71 (133) T 3o9x_A 3 MKCPVCHQGEMVSGIKDIPYTFRGRKTVLKGIHGLYCVHCEESIM-NKEESDAFMAQVKAFRASVNAETV---------- 71 (133) T ss_dssp CBCTTTSSSBEEEEEEEEEEEETTEEEEEEEEEEEEESSSSCEEC-CHHHHHHHHHHHHHHHHHHHTTTC---------- T ss_pred CCCCCCCCCCEECCCCEEEEEECCEEEEECCEEEEECCCCCCCCC-CHHHHHHHHHHHHHHHHHHCCCCC---------- T ss_conf 899689995403012114799778889983512158988878744-713568999999998864212689---------- Q ss_pred CCHHHHHHHHHHHCCCC Q ss_conf 20356677666421667 Q gi|254780820|r 91 KKYIDRLKENRSKTGLI 107 (284) Q Consensus 91 k~Y~drl~~a~~kTg~~ 107 (284) ..++|++.|++.|+. T Consensus 72 --~~e~ir~~R~~~gls 86 (133) T 3o9x_A 72 --APEFIVKVRKKLSLT 86 (133) T ss_dssp --CHHHHHHHHHHTTCC T ss_pred --CHHHHHHHHHHCCCC T ss_conf --999999999984999 No 103 >2vc7_A Aryldialkylphosphatase; phosphotriesterase, promiscuous activities, enzyme evolution, hyperthermophilic, lactonase, hydrolase; HET: KCX GOL HT5; 2.05A {Sulfolobus solfataricus} PDB: 2vc5_A* Probab=78.76 E-value=2.2 Score=22.39 Aligned_cols=105 Identities=19% Similarity=0.218 Sum_probs=59.4 Q ss_pred CCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCC Q ss_conf 57789999999999998628968999768887765212467777889999999986299889985676420111120146 Q gi|254780820|r 136 IGIAAGEAIVKSCERAIAEKCPLVMFTASGGARMQEGILSLMQLPRTTIAINMLKDAGLPYIVVLTNPTTGGVTASYAML 215 (284) Q Consensus 136 mG~~~geki~~a~e~A~~~~~PlI~~~~SGGaRMqEG~~sL~qMakt~~a~~~l~~~~lP~I~vl~~pt~GGv~AS~a~l 215 (284) .....-+-+.++++.|.+.++|+++-+..++.. .. .-+..+.+.+.|.-.++...|..+....++. T Consensus 145 ~~~~q~~~f~~~~~~A~e~~lPv~iH~r~~~~~----~~---------~~l~~~~~~~~~~~~~~i~H~~~~~~~~~~~- 210 (314) T 2vc7_A 145 ITKDVEKVIRAAAIANKETKVPIITHSNAHNNT----GL---------EQQRILTEEGVDPGKILIGHLGDTDNIDYIK- 210 (314) T ss_dssp SCHHHHHHHHHHHHHHHHHCCCEEEECCTTTTH----HH---------HHHHHHHHTTCCGGGEEETTGGGCCCHHHHH- T ss_pred CCHHHHHHHHHHHHHHHHHCCCEEEEECCCCHH----HH---------HHHHHHHHHCCCCCCCEEEECCCCCCHHHHH- T ss_conf 987999999999999998699379850664141----89---------9999999741687765787449988799999- Q ss_pred CCEEEEECCCEEECCCHHHHHHHHCCCCCCCCHHH---HHHHHCCCCCEEE Q ss_conf 85255531421102327887876367788720215---9999689835373 Q gi|254780820|r 216 GDIHLAEPGAEIGFAGRRVIEQTVREKLPDGFQRS---EYLVEHGMIDRIV 263 (284) Q Consensus 216 gDiiiaep~a~igFaG~rVi~~t~~~~lp~~fqta---e~l~~~G~iD~iv 263 (284) -+++.|..|+|.|-... ...| +-+++ ..+++.|..|.|+ T Consensus 211 ---~~l~~G~~i~fd~~~~~-----~~~~-~~~~~~~~~~li~~g~~drIl 252 (314) T 2vc7_A 211 ---KIADKGSFIGLDRYGLD-----LFLP-VDKRNETTLRLIKDGYSDKIM 252 (314) T ss_dssp ---HHHHTTCEEEECCTTCT-----TTSC-HHHHHHHHHHHHHTTCTTTEE T ss_pred ---HHHHCCCEEEECCCCCC-----CCCC-HHHHHHHHHHHHHHCCCCEEE T ss_conf ---99975987986761211-----3483-489999999999864940099 No 104 >1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12 Probab=78.57 E-value=1.1 Score=24.76 Aligned_cols=88 Identities=17% Similarity=0.327 Sum_probs=55.7 Q ss_pred EEEEECEEEEEEEEECHHHCCCCCHHHHHHHHHHHHHHHH-----HCCCEEEEECCCCCCCCCCHHHHHHHH-------- Q ss_conf 8787041499999833031853577899999999999986-----289689997688877652124677778-------- Q gi|254780820|r 114 VGNVRDFKLVAVVHEFSFIGGSIGIAAGEAIVKSCERAIA-----EKCPLVMFTASGGARMQEGILSLMQLP-------- 180 (284) Q Consensus 114 ~G~I~G~~vvv~~~df~F~GGSmG~~~geki~~a~e~A~~-----~~~PlI~~~~SGGaRMqEG~~sL~qMa-------- 180 (284) ..+|-|.+|.+.- || ..+++--..|+..|-+ ++.-+-.+.-.|..-..|.+.++.-.+ T Consensus 82 l~kIfGkRvIi~g------~g---~qv~qva~gai~Eadrhnirgerisvdtip~~Ge~~l~eAv~av~rl~r~~~lvla 152 (223) T 1y7p_A 82 FERVFGKRVIILG------GG---ALVSQVAIGAISEADRHNLRGERISVDTMPVVGEEEIAEAVKAVSRLHRAEVLVLA 152 (223) T ss_dssp HHHHTCEEEEEEE------CH---HHHHHHHHHHHHHHHHHHHTSCCEEEEEEECCSHHHHHHHHHHGGGSTTEEEEEEE T ss_pred HHHHCCEEEEEEC------CC---CEEEHHHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHHHHHCCCCCCEEEEE T ss_conf 6871531799988------89---57436455357777763165775237778506778999999986135677669980 Q ss_pred ------HHHHHHHHHHHCCCCEEEE-------------ECCCCCCEEEE Q ss_conf ------8999999998629988998-------------56764201111 Q gi|254780820|r 181 ------RTTIAINMLKDAGLPYIVV-------------LTNPTTGGVTA 210 (284) Q Consensus 181 ------kt~~a~~~l~~~~lP~I~v-------------l~~pt~GGv~A 210 (284) +++.|+.++++.|+|.||+ .|||.-.||.| T Consensus 153 gs~mgg~i~~~v~~~~~~~~~vi~l~m~gs~~~~~dlvv~dp~qag~~a 201 (223) T 1y7p_A 153 GGIMGGKITEEVKKLRKSGIRVISLSMFGSVPDVADVVISDPVMAGTLA 201 (223) T ss_dssp SSBCCTHHHHHHHHHGGGTCEEEEESCBSSHHHHSSEEESSHHHHHHHH T ss_pred CCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCCEEECCCHHHHHHH T ss_conf 6531655899999999869859996378886540016755834655667 No 105 >2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A Probab=78.47 E-value=2.1 Score=22.65 Aligned_cols=21 Identities=19% Similarity=0.329 Sum_probs=16.7 Q ss_pred CEECCCCCCEEEHHHHHHHCCCCCCCCC Q ss_conf 1056676872217889863383889989 Q gi|254780820|r 26 WVKCPETGAMVYHKDLKENQWVISSSDF 53 (284) Q Consensus 26 W~kCp~C~~~i~~~~l~~n~~VCp~C~~ 53 (284) -.+|++|+..-.+ .+||.||- T Consensus 6 irkC~~C~~YTL~-------~~Cp~CG~ 26 (60) T 2apo_B 6 MKKCPKCGLYTLK-------EICPKCGE 26 (60) T ss_dssp CEECTTTCCEESS-------SBCSSSCS T ss_pred HHHCCCCCCEECC-------CCCCCCCC T ss_conf 6518746665354-------53767878 No 106 >3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A Probab=77.50 E-value=0.48 Score=27.34 Aligned_cols=26 Identities=8% Similarity=0.081 Sum_probs=12.2 Q ss_pred CCEECCCCCCEEEHHHHHHHCCCCCCCCC Q ss_conf 01056676872217889863383889989 Q gi|254780820|r 25 LWVKCPETGAMVYHKDLKENQWVISSSDF 53 (284) Q Consensus 25 lW~kCp~C~~~i~~~~l~~n~~VCp~C~~ 53 (284) ++.+|+.|+.++... .|...||+|++ T Consensus 139 v~a~c~~c~~~l~~~---~~~~~C~~cg~ 164 (179) T 3m7n_A 139 LRALCSNCKTEMVRE---GDILKCPECGR 164 (179) T ss_dssp EECBCTTTCCBCEEC---SSSEECSSSCC T ss_pred EEEECCCCCCEEEEE---CCEEECCCCCC T ss_conf 999678778607770---99999999998 No 107 >3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A* Probab=77.40 E-value=0.89 Score=25.33 Aligned_cols=28 Identities=14% Similarity=0.117 Sum_probs=20.6 Q ss_pred EECCCCCCEEEHHH------------------HHHHCCCCCCCCCC Q ss_conf 05667687221788------------------98633838899896 Q gi|254780820|r 27 VKCPETGAMVYHKD------------------LKENQWVISSSDFH 54 (284) Q Consensus 27 ~kCp~C~~~i~~~~------------------l~~n~~VCp~C~~H 54 (284) ..|++|+....-.+ +...++.||+||-+ T Consensus 71 ~~C~~Cg~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~CP~Cgs~ 116 (139) T 3a43_A 71 FKCRNCNYEWKLKEVKDKFDERIKEDIHFIPEVVHAFLACPKCGSH 116 (139) T ss_dssp EEETTTCCEEEGGGCTTCCSCCCGGGCCCCGGGCGGGCSCSSSSCC T ss_pred EECCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 8986789841114200011211122223343234655479197698 No 108 >2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori} Probab=76.49 E-value=0.67 Score=26.26 Aligned_cols=29 Identities=14% Similarity=0.234 Sum_probs=19.4 Q ss_pred EECCCCCCEEEHHHHHHHCCCCCCCCC-CEEC Q ss_conf 056676872217889863383889989-6243 Q gi|254780820|r 27 VKCPETGAMVYHKDLKENQWVISSSDF-HMKI 57 (284) Q Consensus 27 ~kCp~C~~~i~~~~l~~n~~VCp~C~~-H~rl 57 (284) ..|++|+......+. .+..||+||- +.++ T Consensus 74 ~~C~~Cg~~~~~~~~--~~~~CP~Cgs~~~~i 103 (119) T 2kdx_A 74 LECKDCSHVFKPNAL--DYGVCEKCHSKNVII 103 (119) T ss_dssp EECSSSSCEECSCCS--TTCCCSSSSSCCCEE T ss_pred EECCCCCCEECCCCC--CCCCCCCCCCCCCEE T ss_conf 898789988334775--477290978999797 No 109 >2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 Probab=75.85 E-value=0.6 Score=26.59 Aligned_cols=10 Identities=0% Similarity=-0.134 Sum_probs=3.6 Q ss_pred EEEECEEEEE Q ss_conf 7870414999 Q gi|254780820|r 115 GNVRDFKLVA 124 (284) Q Consensus 115 G~I~G~~vvv 124 (284) -.|+...+.+ T Consensus 90 ~~v~~~~a~V 99 (209) T 2nn6_I 90 SSINSRFAKV 99 (209) T ss_dssp EEECSSEEEE T ss_pred EEECCCEEEE T ss_conf 9984787999 No 110 >2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase/structural protein complex; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B Probab=74.92 E-value=2.4 Score=22.21 Aligned_cols=22 Identities=18% Similarity=0.210 Sum_probs=17.0 Q ss_pred CCEECCCCCCEEEHHHHHHHCCCCCCCCC Q ss_conf 01056676872217889863383889989 Q gi|254780820|r 25 LWVKCPETGAMVYHKDLKENQWVISSSDF 53 (284) Q Consensus 25 lW~kCp~C~~~i~~~~l~~n~~VCp~C~~ 53 (284) +-.+|++|+..-.+ .+||.||- T Consensus 4 ~irkC~~C~~YTLk-------~~CP~CG~ 25 (60) T 2aus_D 4 RIRKCPKCGRYTLK-------ETCPVCGE 25 (60) T ss_dssp CCEECTTTCCEESS-------SBCTTTCS T ss_pred HHHCCCCCCCEECC-------CCCCCCCC T ss_conf 41148746666355-------63767878 No 111 >3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae} Probab=74.81 E-value=0.39 Score=27.97 Aligned_cols=31 Identities=16% Similarity=0.306 Sum_probs=22.2 Q ss_pred CCEECCCCCCE--EEHHHHHHHCCCCCCCCCCE Q ss_conf 01056676872--21788986338388998962 Q gi|254780820|r 25 LWVKCPETGAM--VYHKDLKENQWVISSSDFHM 55 (284) Q Consensus 25 lW~kCp~C~~~--i~~~~l~~n~~VCp~C~~H~ 55 (284) .=..||.|++. ....|-.....||..||+=. T Consensus 20 ~~~~C~~C~~~~~~iv~D~~~G~~vC~~CG~Vl 52 (345) T 3k7a_M 20 IVLTCPECKVYPPKIVERFSEGDVVCALCGLVL 52 (345) T ss_dssp CCCCCSTTCCSCCCCCCCSSSCSCCCSSSCCCC T ss_pred CCEECCCCCCCCCCEEEECCCCCEECCCCCCCC T ss_conf 031895999999864678788988314688780 No 112 >1tg6_A Putative ATP-dependent CLP protease proteolytic subunit; mitochondrial CLPP, CLP/HSP 100, X-RAY crystallography, ATP- dependent protease; HET: FME; 2.10A {Homo sapiens} SCOP: c.14.1.1 Probab=74.07 E-value=4.8 Score=19.92 Aligned_cols=120 Identities=18% Similarity=0.298 Sum_probs=63.7 Q ss_pred HHCCCCCHHHHHHHHHHHH--HHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCEE Q ss_conf 3185357789999999999--99862896899976888776521246777788999999998629988998567642011 Q gi|254780820|r 131 FIGGSIGIAAGEAIVKSCE--RAIAEKCPLVMFTASGGARMQEGILSLMQLPRTTIAINMLKDAGLPYIVVLTNPTTGGV 208 (284) Q Consensus 131 F~GGSmG~~~geki~~a~e--~A~~~~~PlI~~~~SGGaRMqEG~~sL~qMakt~~a~~~l~~~~lP~I~vl~~pt~GGv 208 (284) |++|-+...++..|+.-+- .+....-|+-++..|-|--+.+|. . -++.++.-+.|..++.. |. T Consensus 86 fl~g~Idd~~a~~iiaqLl~Le~ed~~k~I~lyINSpGGsv~~Gl----a------IyD~m~~i~~~V~Tv~~-----G~ 150 (277) T 1tg6_A 86 CVMGPIDDSVASLVIAQLLFLQSESNKKPIHMYINSPGGVVTAGL----A------IYDTMQYILNPICTWCV-----GQ 150 (277) T ss_dssp EEESSBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECCBCHHHHH----H------HHHHHHHSCSCEEEEEE-----EE T ss_pred EECCEECHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHH----H------HHHHHHHCCCCCEEEEE-----EE T ss_conf 989877589999999999998665999878999979995687899----9------99999854888569986-----32 Q ss_pred EEEEC----CCCC--EEEEECCCEEE-------CCCHHH-HH------------------HHHCC-------CC-CCCCH Q ss_conf 11201----4685--25553142110-------232788-78------------------76367-------78-87202 Q gi|254780820|r 209 TASYA----MLGD--IHLAEPGAEIG-------FAGRRV-IE------------------QTVRE-------KL-PDGFQ 248 (284) Q Consensus 209 ~AS~a----~lgD--iiiaep~a~ig-------FaG~rV-i~------------------~t~~~-------~l-p~~fq 248 (284) .||-| +-|+ --++-|+|.|. +-|..- |+ +-+|+ ++ -+-|- T Consensus 151 AaSmaslIlaaG~kgkR~a~pns~iMIHqp~~~~~G~a~di~~~a~el~~~~~~l~~iya~~TG~~~e~I~~~m~rD~~m 230 (277) T 1tg6_A 151 AASMGSLLLAAGTPGMRHSLPNSRIMIHQPSGGARGQATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIESAMERDRYM 230 (277) T ss_dssp EETHHHHHHHTSCTTCEEECTTCEEEECCCCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHSSCEEE T ss_pred ECCHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCC T ss_conf 23056789872677710338998788725865777589999999999999999999999998793999999875068406 Q ss_pred HHHHHHHCCCCCEEECH Q ss_conf 15999968983537358 Q gi|254780820|r 249 RSEYLVEHGMIDRIVHR 265 (284) Q Consensus 249 tae~l~~~G~iD~iv~r 265 (284) +|+-.++-|+||.|+.. T Consensus 231 sa~EA~eyGliD~Ii~~ 247 (277) T 1tg6_A 231 SPMEAQEFGILDKVLVH 247 (277) T ss_dssp CHHHHHHHTSCSEECSS T ss_pred CHHHHHHCCCCCEEECC T ss_conf 59999983998789337 No 113 >3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae} Probab=73.33 E-value=0.54 Score=26.95 Aligned_cols=32 Identities=19% Similarity=0.336 Sum_probs=23.4 Q ss_pred CCCEECCCCCCE--EEHHHHHHHCCCCCCCCCCE Q ss_conf 601056676872--21788986338388998962 Q gi|254780820|r 24 NLWVKCPETGAM--VYHKDLKENQWVISSSDFHM 55 (284) Q Consensus 24 ~lW~kCp~C~~~--i~~~~l~~n~~VCp~C~~H~ 55 (284) +.=..||.|++. ....|-+....||..||+=. T Consensus 19 Nitl~CPeCGS~~t~IVeD~s~GEiVCsdCGLVI 52 (197) T 3k1f_M 19 NIVLTCPECKVYPPKIVERFSEGDVVCALCGLVL 52 (197) T ss_dssp CCCCCCTTTCCSSCCEEEEGGGTEEEETTTCBBC T ss_pred EEEEECCCCCCCCCEEEEECCCCCEECCCCCEEE T ss_conf 6546899999989989897998968971489292 No 114 >3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protein structure initiative, midwest center for structural genomics; 2.00A {Nitrosomonas europaea atcc 19718} Probab=70.98 E-value=0.35 Score=28.38 Aligned_cols=34 Identities=9% Similarity=0.055 Sum_probs=21.3 Q ss_pred CEECCCCCCEEEHHHHH---HHCCCCCCCCCCEECCH Q ss_conf 10566768722178898---63383889989624379 Q gi|254780820|r 26 WVKCPETGAMVYHKDLK---ENQWVISSSDFHMKIPA 59 (284) Q Consensus 26 W~kCp~C~~~i~~~~l~---~n~~VCp~C~~H~rl~a 59 (284) |.=||+||+.+..+..+ ..-++||+|++.+.-.| T Consensus 3 ~~yCp~CG~~~~~~~~~g~~~~~~~C~~C~~~~y~~p 39 (189) T 3cng_A 3 MKFCSQCGGEVILRIPEGDTLPRYICPKCHTIHYQNP 39 (189) T ss_dssp CCBCTTTCCBCEEECCTTCSSCEEEETTTTEEECCCC T ss_pred CEECCCCCCCCEECCCCCCCCEEEECCCCCCCCCCCC T ss_conf 6058467875640346889724753799997608999 No 115 >1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1 Probab=70.45 E-value=0.47 Score=27.41 Aligned_cols=28 Identities=14% Similarity=0.236 Sum_probs=22.2 Q ss_pred EECCCCCCEEEHHHHHHHCCCCCCCCCC Q ss_conf 0566768722178898633838899896 Q gi|254780820|r 27 VKCPETGAMVYHKDLKENQWVISSSDFH 54 (284) Q Consensus 27 ~kCp~C~~~i~~~~l~~n~~VCp~C~~H 54 (284) ..||.|++.....|-.....||..||.= T Consensus 6 ~~Cp~Cgs~~iv~D~~~Ge~vC~~CG~V 33 (50) T 1pft_A 6 KVCPACESAELIYDPERGEIVCAKCGYV 33 (50) T ss_dssp CSCTTTSCCCEEEETTTTEEEESSSCCB T ss_pred CCCCCCCCCCEEEECCCCEEECCCCCCE T ss_conf 5385988983788688892862789859 No 116 >1l1o_C Replication protein A 70 kDa DNA-binding subunit; eukaryotic SSB, ssDNA binding protein, OB-fold; 2.80A {Homo sapiens} SCOP: b.40.4.3 Probab=69.57 E-value=0.68 Score=26.18 Aligned_cols=48 Identities=15% Similarity=0.191 Sum_probs=29.0 Q ss_pred CCCCC-EECCC--CCCEEEHHHHHHHCCCCCCCCCCEE-CCHHHHHHHHCCCCC Q ss_conf 74601-05667--6872217889863383889989624-379999998455654 Q gi|254780820|r 22 PENLW-VKCPE--TGAMVYHKDLKENQWVISSSDFHMK-IPAKERLKFLFDNAK 71 (284) Q Consensus 22 p~~lW-~kCp~--C~~~i~~~~l~~n~~VCp~C~~H~r-l~areRi~~l~D~gs 71 (284) ++++| ..||. |+..+.. -..+.|.|+.|+.... ...|=++.+.++++| T Consensus 38 ~~~~~Y~aCp~~~C~kKv~~--~~~~~~~C~~C~~~~~~~~~ry~l~~~i~D~T 89 (181) T 1l1o_C 38 KENCMYQACPTQDCNKKVID--QQNGLYRCEKCDTEFPNFKYRMILSVNIADFQ 89 (181) T ss_dssp CSTTEEEBCCSTTCCCBCEE--ETTTEEEETTTTEEESSCCEEEEEEEEEECSS T ss_pred CCCEEECCCCCHHCCCCCCC--CCCCEEECCCCCCCCCCEEEEEEEEEEEECCC T ss_conf 79889825890435983555--89982888878982776069999999998289 No 117 >1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; HET: MSE; 2.20A {Escherichia coli K12} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A Probab=69.16 E-value=0.68 Score=26.20 Aligned_cols=23 Identities=17% Similarity=0.471 Sum_probs=9.6 Q ss_pred CHHHCCCCCHHHHHHHHHHHHHHHH Q ss_conf 3031853577899999999999986 Q gi|254780820|r 129 FSFIGGSIGIAAGEAIVKSCERAIA 153 (284) Q Consensus 129 f~F~GGSmG~~~geki~~a~e~A~~ 153 (284) +++.||-+- .||-...|+.+-+. T Consensus 166 WslPgGfVE--~GEt~eeAa~REv~ 188 (269) T 1vk6_A 166 HTVLAGFVE--VGETLEQAVAREVM 188 (269) T ss_dssp CBCEEEECC--TTCCHHHHHHHHHH T ss_pred EEECCCCCC--CCCCHHHHHHHHHH T ss_conf 760166543--89989999889876 No 118 >1nnq_A Rubrerythrin; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 2.35A {Pyrococcus furiosus} SCOP: a.25.1.1 g.41.5.1 PDB: 2hr5_A Probab=68.89 E-value=1.6 Score=23.40 Aligned_cols=38 Identities=13% Similarity=0.010 Sum_probs=24.3 Q ss_pred CCCCCCCCCCCCCCEECCCCCCEEEHHHHHHHCCCCCCCCCC Q ss_conf 445422247746010566768722178898633838899896 Q gi|254780820|r 13 NSVFGRRAIPENLWVKCPETGAMVYHKDLKENQWVISSSDFH 54 (284) Q Consensus 13 ~~~~~kk~ip~~lW~kCp~C~~~i~~~~l~~n~~VCp~C~~H 54 (284) ..+.+.++.+..-.-.||.||-+... +.--+||-|++. T Consensus 126 ~~l~~~~~~~~~~~~vC~~CG~i~~g----~~P~~CPvC~~p 163 (171) T 1nnq_A 126 EKAEKGEDIEIKKVYICPICGYTAVD----EAPEYCPVCGAP 163 (171) T ss_dssp HHHHTTCCCCCSCEEECTTTCCEEES----CCCSBCTTTCCB T ss_pred HHHHHCCCCCCCCEEECCCCCCCCCC----CCCCCCCCCCCC T ss_conf 87551245677873589989393899----999979799996 No 119 >1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5'-triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A* Probab=67.61 E-value=6.2 Score=19.08 Aligned_cols=58 Identities=19% Similarity=0.314 Sum_probs=41.1 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHH--H---------HCCCCEEEEEC Q ss_conf 853577899999999999986289689997688877652124677778899999999--8---------62998899856 Q gi|254780820|r 133 GGSIGIAAGEAIVKSCERAIAEKCPLVMFTASGGARMQEGILSLMQLPRTTIAINML--K---------DAGLPYIVVLT 201 (284) Q Consensus 133 GGSmG~~~geki~~a~e~A~~~~~PlI~~~~SGGaRMqEG~~sL~qMakt~~a~~~l--~---------~~~lP~I~vl~ 201 (284) -|-+|...=|--..|+++|.++++|+..+|-+ ||++-+-.|-+-+ + +..-|.|.++. T Consensus 350 PGGFG~RGiEGKI~Ai~yARen~IPfLGICLG------------mQ~aVIEfARNVlgl~dAnStEf~~~t~~pVI~lm~ 417 (545) T 1s1m_A 350 PGGFGYRGVEGMITTARFARENNIPYLGICLG------------MQVALIDYARHVANMENANSTEFVPDCKYPVVALIT 417 (545) T ss_dssp CCCCSSTTHHHHHHHHHHHHHTTCCEEEETHH------------HHHHHHHHHHHHHCCTTCEETTTCSSCSCEEEECTT T ss_pred CCCCCCCCCCHHHHHHHHHHHCCCCEEEHHHH------------HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECH T ss_conf 78888777031999999997679985324676------------799999999973599998720479999997899542 Q ss_pred C Q ss_conf 7 Q gi|254780820|r 202 N 202 (284) Q Consensus 202 ~ 202 (284) . T Consensus 418 e 418 (545) T 1s1m_A 418 E 418 (545) T ss_dssp T T ss_pred H T ss_conf 2 No 120 >3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} Probab=67.49 E-value=0.91 Score=25.27 Aligned_cols=29 Identities=28% Similarity=0.593 Sum_probs=19.2 Q ss_pred CCCCCCCCCCEECCCCCCEEEHHHHHHHCCCCCCCCC Q ss_conf 2224774601056676872217889863383889989 Q gi|254780820|r 17 GRRAIPENLWVKCPETGAMVYHKDLKENQWVISSSDF 53 (284) Q Consensus 17 ~kk~ip~~lW~kCp~C~~~i~~~~l~~n~~VCp~C~~ 53 (284) ..+.+|...| +|..|.. ..|+|+|=.||| T Consensus 207 ~~~~~~~~~~-~C~~c~~-------~~nlw~CL~CG~ 235 (854) T 3ihp_A 207 NPARIPPCGW-KCSKCDM-------RENLWLNLTDGS 235 (854) T ss_dssp SCCCCCSSCC-CCSSSCC-------CSSEEEETTTCC T ss_pred CCCCCCCCCC-CCCCCCC-------CCCEEEEEECCC T ss_conf 7764799898-1345899-------886489975896 No 121 >1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1 Probab=67.19 E-value=0.48 Score=27.34 Aligned_cols=35 Identities=11% Similarity=0.352 Sum_probs=23.4 Q ss_pred CCCCCCEECCCCCCE---EEH------HHHHHHCCCCCCCCCCEE Q ss_conf 774601056676872---217------889863383889989624 Q gi|254780820|r 21 IPENLWVKCPETGAM---VYH------KDLKENQWVISSSDFHMK 56 (284) Q Consensus 21 ip~~lW~kCp~C~~~---i~~------~~l~~n~~VCp~C~~H~r 56 (284) .|... .+||.|+.. .+. +|=.--+|+|.+|+|++| T Consensus 11 ~p~~~-~~Cp~C~~~~~~~~~~QtRsaDE~~T~fy~C~~C~~~wr 54 (57) T 1qyp_A 11 LPTTK-ITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHTWR 54 (57) T ss_dssp SCEEE-CCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCCEEE T ss_pred CCCCC-CCCCCCCCCCEEEEEEECCCCCCCCEEEEEECCCCCCCE T ss_conf 79333-899899698269999640346778759999489898741 No 122 >1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Probab=66.60 E-value=6.7 Score=18.83 Aligned_cols=46 Identities=22% Similarity=0.392 Sum_probs=30.1 Q ss_pred HCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCE Q ss_conf 289689997688877652124677778899999999862998899856764201 Q gi|254780820|r 154 EKCPLVMFTASGGARMQEGILSLMQLPRTTIAINMLKDAGLPYIVVLTNPTTGG 207 (284) Q Consensus 154 ~~~PlI~~~~SGGaRMqEG~~sL~qMakt~~a~~~l~~~~lP~I~vl~~pt~GG 207 (284) ..+|+|.+..||| |.-|+..++-...| +.+.||..-+-+..-..|| T Consensus 185 ~~vP~Iai~~SGG-----G~RAml~g~G~l~a---ld~~GLLq~~tYlaGlSGg 230 (749) T 1cjy_A 185 RDVPVVAILGSGG-----GFRAMVGFSGVMKA---LYESGILDCATYVAGLSGS 230 (749) T ss_dssp SSCCCEEEEECCC-----HHHHHHHHHHHHHH---HHHTSCGGGEEEEEECHHH T ss_pred CCCCEEEEECCCC-----CHHHHHCCCHHHHH---HHHCCCCCCHHHHHCCCCC T ss_conf 6686688751676-----07677603367999---8755851001023115665 No 123 >2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus} Probab=65.40 E-value=0.51 Score=27.14 Aligned_cols=70 Identities=10% Similarity=0.236 Sum_probs=34.9 Q ss_pred EECHHHCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCC Q ss_conf 83303185357789999999999998628968999768887765212467777889999999986299889985676420 Q gi|254780820|r 127 HEFSFIGGSIGIAAGEAIVKSCERAIAEKCPLVMFTASGGARMQEGILSLMQLPRTTIAINMLKDAGLPYIVVLTNPTTG 206 (284) Q Consensus 127 ~df~F~GGSmG~~~geki~~a~e~A~~~~~PlI~~~~SGGaRMqEG~~sL~qMakt~~a~~~l~~~~lP~I~vl~~pt~G 206 (284) +...-+||.+..++| -+.+.. -+++.. |+. .-+| +.+... -.+-.....++.+.+...|+--++.||..- T Consensus 306 v~pG~~~G~~TTVEG-lL~~i~-d~l~~~-~~~-~gDs----~~~~~~--~k~~~~l~~L~~~~~g~~~fTlIldDP~Gn 375 (404) T 2qkd_A 306 LGMAVLGGKFTTLEG-LLKDIR-ELVTKN-PFT-LGDS----SNPDQS--EKLQEFSQKLGQIIEGKMKAHFIMNDPAGN 375 (404) T ss_dssp ECTTTTCSEEEEHHH-HHHHHH-HHHHSS-CCC-SSSC----CCGGGC--HHHHHHHHHHHHHHTTSSCEEEEEEETTCC T ss_pred ECCCCCCCEEEEHHH-HHHHHH-HHHHHC-HHH-CCCC----CCHHHH--HHHHHHHHHHHHHHCCCCCEEEEEECCCCC T ss_conf 758766670774899-999999-999744-021-0477----898999--999999999999972898559999889878 No 124 >3flo_B DNA polymerase alpha catalytic subunit A; protein-protein complex, phosphoesterase fold, OB fold, zinc-binding motif, DNA replication; HET: DNA; 2.50A {Saccharomyces cerevisiae} Probab=64.93 E-value=0.59 Score=26.67 Aligned_cols=49 Identities=8% Similarity=0.098 Sum_probs=30.0 Q ss_pred CCCCCCCEECCCCCCEEEHHHH--------HHHCCCCCCCCCCEE-CCHHHHHHHHCC Q ss_conf 4774601056676872217889--------863383889989624-379999998455 Q gi|254780820|r 20 AIPENLWVKCPETGAMVYHKDL--------KENQWVISSSDFHMK-IPAKERLKFLFD 68 (284) Q Consensus 20 ~ip~~lW~kCp~C~~~i~~~~l--------~~n~~VCp~C~~H~r-l~areRi~~l~D 68 (284) .--+-|..+||+|+....-+-+ .-+...||+|+..+. ..-..++++.+. T Consensus 16 k~c~~l~l~C~~C~~~~~f~gv~~~~~~~~~~~g~~C~~c~~~~~~~~i~Nql~l~iR 73 (206) T 3flo_B 16 KDTVTLELSCPSCDKRFPFGGIVSSNYYRVSYNGLQCKHCEQLFTPLQLTSQIEHSIR 73 (206) T ss_dssp TTCCCEEEECTTTCCEEEECSSSCCSSEEEETTEEEETTTCCBCCHHHHHHHHHHHHH T ss_pred CCCCEEEEECCCCCCCEECCCCCCCCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHH T ss_conf 6783478689999985037873036776200476788898995899999999999999 No 125 >2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus} Probab=64.63 E-value=0.71 Score=26.08 Aligned_cols=30 Identities=3% Similarity=0.045 Sum_probs=19.8 Q ss_pred EECCCCCCEEEHH----------HHHHHCCCCCCCCCCEE Q ss_conf 0566768722178----------89863383889989624 Q gi|254780820|r 27 VKCPETGAMVYHK----------DLKENQWVISSSDFHMK 56 (284) Q Consensus 27 ~kCp~C~~~i~~~----------~l~~n~~VCp~C~~H~r 56 (284) .-||+|++.-..+ +.----+.||+|||+.. T Consensus 13 SlCp~C~~~g~tr~l~t~IPyF~evii~sf~C~~CG~kn~ 52 (404) T 2qkd_A 13 SLCMNCYRNGTTRLLLTKIPFFREIIVSSFSCEHCGWNNT 52 (404) T ss_dssp EECTTTSSEEEEEEEEEEETTTEEEEEEEEECTTTCCEEE T ss_pred EECCCCCCCCEEEEEEECCCCCCCEEEEEEECCCCCCCCC T ss_conf 3175678787799998438876638999998998899243 No 126 >2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens} Probab=64.62 E-value=1.9 Score=22.84 Aligned_cols=32 Identities=16% Similarity=0.149 Sum_probs=19.5 Q ss_pred CCCEECC--CCCCEEEHHHHHHH----CCCCCCCCCCEEC Q ss_conf 6010566--76872217889863----3838899896243 Q gi|254780820|r 24 NLWVKCP--ETGAMVYHKDLKEN----QWVISSSDFHMKI 57 (284) Q Consensus 24 ~lW~kCp--~C~~~i~~~~l~~n----~~VCp~C~~H~rl 57 (284) ++| || +|+..+...+-... ..+|+.|++-|=. T Consensus 25 ~~w--CP~p~C~~~i~~~~~~~~~~c~~~~c~~C~~~fC~ 62 (80) T 2jmo_A 25 GVL--CPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCR 62 (80) T ss_dssp SCC--CCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEET T ss_pred CEE--CCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEECC T ss_conf 968--97999974278789877545578613999596673 No 127 >1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein, C2H2 type zinc-finger, structural genomics; NMR {Mus musculus} SCOP: g.37.1.2 g.37.1.2 Probab=63.40 E-value=2.1 Score=22.63 Aligned_cols=29 Identities=10% Similarity=0.250 Sum_probs=25.7 Q ss_pred CCEECCCCCCEEEHHHHHHHCCCCCCCCC Q ss_conf 01056676872217889863383889989 Q gi|254780820|r 25 LWVKCPETGAMVYHKDLKENQWVISSSDF 53 (284) Q Consensus 25 lW~kCp~C~~~i~~~~l~~n~~VCp~C~~ 53 (284) .|-.|..||+.+-++.+++.++.|..|.+ T Consensus 9 V~F~C~~CgdtlKK~kv~~H~~~Cr~~~~ 37 (79) T 1wjv_A 9 VFFTCNACGESVKKIQVEKHVSNCRNCEC 37 (79) T ss_dssp CEEEESSSCCEEETTHHHHHHHHCTTCCE T ss_pred EEEECCCCCCEECCCCCHHHHHHCCCCCE T ss_conf 58888878787122014889986789990 No 128 >3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone, THDP, metal, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A* Probab=62.99 E-value=0.43 Score=27.65 Aligned_cols=132 Identities=19% Similarity=0.225 Sum_probs=67.1 Q ss_pred EEEEEECHHHCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECC Q ss_conf 99998330318535778999999999999862896899976888776521246777788999999998629988998567 Q gi|254780820|r 123 VAVVHEFSFIGGSIGIAAGEAIVKSCERAIAEKCPLVMFTASGGARMQEGILSLMQLPRTTIAINMLKDAGLPYIVVLTN 202 (284) Q Consensus 123 vv~~~df~F~GGSmG~~~geki~~a~e~A~~~~~PlI~~~~SGGaRMqEG~~sL~qMakt~~a~~~l~~~~lP~I~vl~~ 202 (284) .....-+.-||++++.+.|-+ .| ..-|+|+++.=||.-|.- ..+......++|.+.|+.| T Consensus 409 ~~~~~~~g~~G~~~~~aiGaa------~a--~~~~vv~i~GDGsf~~~~------------~eL~Ta~r~~lpi~vvV~N 468 (556) T 3hww_A 409 VYSNRGASGIDGLLSTAAGVQ------RA--SGKPTLAIVGDLSALYDL------------NALALLRQVSAPLVLIVVN 468 (556) T ss_dssp EEECCSSCCSSSHHHHHHHHH------HH--HCCCEEEEEEHHHHHHTG------------GGHHHHTTCSSCEEEEEEE T ss_pred ECCCCCCCCCCCCCHHHHHHH------HC--CCCCCEEEECCHHHHCCH------------HHHHHHHHHCCCCEEEEEE T ss_conf 403786667777437689998------54--699751485663664267------------9999999849695899997 Q ss_pred CCCCEEEEEECC---CCCEEEEEC-C-------CEEECCCHHHHHHHHCCCCCCCCHHHHHHHHC---CCCCEEECHHHH Q ss_conf 642011112014---685255531-4-------21102327887876367788720215999968---983537358999 Q gi|254780820|r 203 PTTGGVTASYAM---LGDIHLAEP-G-------AEIGFAGRRVIEQTVREKLPDGFQRSEYLVEH---GMIDRIVHRHDI 268 (284) Q Consensus 203 pt~GGv~AS~a~---lgDiiiaep-~-------a~igFaG~rVi~~t~~~~lp~~fqtae~l~~~---G~iD~iv~r~~l 268 (284) .-.+|+...... -.+-.+..| + .-.|+-|.|| ..-++|.+-++.+ +++ -.||.++++++- T Consensus 469 N~g~~i~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v---~~~~el~~al~~a---~~~~~p~lIeV~id~~~~ 542 (556) T 3hww_A 469 NNGGQIFSLLPTPQSERERFYLMPQNVHFEHAAAMFELKYHRP---QNWQELETAFADA---WRTPTTTVIEMVVNDTDG 542 (556) T ss_dssp SCC-----------------CCCCCCCCSHHHHHHTTCEEECC---SSHHHHHHHHHHH---TTSSSEEEEEEECCSSHH T ss_pred CCCCHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCCEEEEE---CCHHHHHHHHHHH---HHCCCEEEEEEEECCHHH T ss_conf 9976776102013432342047899999999999679969996---8999999999999---868981999998082777 Q ss_pred HHHHHHHHHHHH Q ss_conf 999999999972 Q gi|254780820|r 269 PEVVSSLCKILT 280 (284) Q Consensus 269 ~~~i~~ll~il~ 280 (284) .+++.+|++-+. T Consensus 543 ~~~~~~~~~~~~ 554 (556) T 3hww_A 543 AQTLQQLLAQVS 554 (556) T ss_dssp HHHHHHHHHHHH T ss_pred HHHHHHHHHHHH T ss_conf 999999999985 No 129 >2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} Probab=62.79 E-value=0.5 Score=27.19 Aligned_cols=42 Identities=17% Similarity=0.254 Sum_probs=28.1 Q ss_pred CCEECCCCCCEE--EHHHHHHH--CCCCCCCCCCEECCHHHHHHHH Q ss_conf 010566768722--17889863--3838899896243799999984 Q gi|254780820|r 25 LWVKCPETGAMV--YHKDLKEN--QWVISSSDFHMKIPAKERLKFL 66 (284) Q Consensus 25 lW~kCp~C~~~i--~~~~l~~n--~~VCp~C~~H~rl~areRi~~l 66 (284) .++.||.|+..- +.++-+.. +..|..||+...+.+++.+.-+ T Consensus 102 ~YVlC~~C~sPdT~l~k~~k~~~~~l~C~aCGa~~~v~~~~Kl~~~ 147 (157) T 2e9h_A 102 KFVLCPECENPETDLHVNPKKQTIGNSCKACGYRGMLDTHHKLCTF 147 (157) T ss_dssp HTTSCTTTCCSCCEEEEETTTTEEEEECSSSCCEEECCCCSSHHHH T ss_pred HEEECCCCCCCCEEEEEECCCCEEEEEHHHCCCCCCCCCHHHHHHE T ss_conf 5899899989864999914787998481126998861837755200 No 130 >1yop_A KTI11P; zinc finger, metal binding protein; NMR {Saccharomyces cerevisiae} SCOP: g.41.17.1 PDB: 1yws_A Probab=62.71 E-value=3.2 Score=21.24 Aligned_cols=45 Identities=22% Similarity=0.426 Sum_probs=33.9 Q ss_pred CCCEECCCCCCE--EEHHHHHHHCCC--CCCCCCCEECCHHHHHHHHCCCCCCCCCCC Q ss_conf 601056676872--217889863383--889989624379999998455654201334 Q gi|254780820|r 24 NLWVKCPETGAM--VYHKDLKENQWV--ISSSDFHMKIPAKERLKFLFDNAKYCLLDQ 77 (284) Q Consensus 24 ~lW~kCp~C~~~--i~~~~l~~n~~V--Cp~C~~H~rl~areRi~~l~D~gsf~Ei~~ 77 (284) .....|| ||.. +...+|++..-| ||.|.-..|+ +||.+.+++... T Consensus 21 ~~~ypCr-CGd~F~ite~dLe~ge~vv~C~sCSL~IrV--------if~~ed~~~~~~ 69 (83) T 1yop_A 21 MFTYPCP-CGDRFQIYLDDMFEGEKVAVCPSCSLMIDV--------VFDKEDLAEYYE 69 (83) T ss_dssp EEEEEET-TTEEEEEEHHHHHTTCCEEECSSSCCEEEC--------BCCSSHHHHHHH T ss_pred EEEECCC-CCCEEEECHHHHHCCCEEEECCCCCCEEEE--------EECHHHHHHHHH T ss_conf 8986268-899689999998289969979999618999--------946478444555 No 131 >2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens} Probab=62.57 E-value=0.42 Score=27.74 Aligned_cols=43 Identities=16% Similarity=0.278 Sum_probs=29.0 Q ss_pred CCEECCCCCCEE--EHHHHHHHCC--CCCCCCCCEECCHHHHHHHHC Q ss_conf 010566768722--1788986338--388998962437999999845 Q gi|254780820|r 25 LWVKCPETGAMV--YHKDLKENQW--VISSSDFHMKIPAKERLKFLF 67 (284) Q Consensus 25 lW~kCp~C~~~i--~~~~l~~n~~--VCp~C~~H~rl~areRi~~l~ 67 (284) .++.||.|+..- +.++=+..++ .|..||+...+.++.++..++ T Consensus 95 ~YVlC~~C~sPeT~l~k~~k~~~~~l~C~aCGa~~~v~~~~k~~~~i 141 (170) T 2g2k_A 95 KFVLCPECENPETDLHVNPKKQTIGNSCKACGYRGMLDTHHKLCTFI 141 (170) T ss_dssp HHHSCTTTSSSCEEEEEETTTTEEEEEETTTCCCCCSCSSSSHHHHH T ss_pred HEEECCCCCCCCEEEEEECCCCEEECCCCCCCCCCCCCCHHHHHHHH T ss_conf 75898999998728999058878866511068988648378775777 No 132 >1h7b_A Anaerobic ribonucleotide-triphosphate reductase large chain; oxidoreductase, allosteric regulation, substrate specificity; 2.45A {Bacteriophage T4} SCOP: c.7.1.3 PDB: 1h79_A* 1h7a_A* 1h78_A 1hk8_A* Probab=61.42 E-value=1.4 Score=23.79 Aligned_cols=56 Identities=14% Similarity=0.161 Sum_probs=24.7 Q ss_pred HHHHHHHHHHHHHHHHHC---------CCEEEEECCCCCCCCCC--HHHHHHHHHHHHHHHHHHHCCCCEEE Q ss_conf 789999999999998628---------96899976888776521--24677778899999999862998899 Q gi|254780820|r 138 IAAGEAIVKSCERAIAEK---------CPLVMFTASGGARMQEG--ILSLMQLPRTTIAINMLKDAGLPYIV 198 (284) Q Consensus 138 ~~~geki~~a~e~A~~~~---------~PlI~~~~SGGaRMqEG--~~sL~qMakt~~a~~~l~~~~lP~I~ 198 (284) +..++.|.+++-.+..++ -|.+++.---|....++ ..-|.+++ +.--.+.+.|++. T Consensus 204 ~~~~~~i~~a~l~~~~~G~~~~g~~~~FP~~~~~i~~~~~~~~~~p~~dl~~~~-----~e~~ak~g~p~f~ 270 (605) T 1h7b_A 204 DWTERMIQKAILKNRIKGLGRDGITPIFPKLVMFVEEGVNLYKDDPNYDIKQLA-----LECASKRMYPDII 270 (605) T ss_dssp SHHHHHHHHHHHHHHHHCBTTTTBCCSCSEEEEEECTTTTSSTTSTTHHHHHHH-----HHHHHHHSCCEEE T ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCHHHHHH-----HHHHHHHCCCHHH T ss_conf 878899799999999717776888765531144541566678999860599999-----9998876670065 No 133 >3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Probab=61.27 E-value=1.3 Score=24.08 Aligned_cols=42 Identities=12% Similarity=0.143 Sum_probs=29.7 Q ss_pred EECCCCCCEEEH---HHH--HHHCCCCCCCCCCEECCHHHHHHHHCCCCCCCCCCCCC Q ss_conf 056676872217---889--86338388998962437999999845565420133456 Q gi|254780820|r 27 VKCPETGAMVYH---KDL--KENQWVISSSDFHMKIPAKERLKFLFDNAKYCLLDQPQ 79 (284) Q Consensus 27 ~kCp~C~~~i~~---~~l--~~n~~VCp~C~~H~rl~areRi~~l~D~gsf~Ei~~~~ 79 (284) -.|..|+-.+-. .++ ......||+||. +||.++.|++...+. T Consensus 199 ~~C~gC~~~l~~~~~~~~~~~~~i~~C~~CgR-----------iL~~~~~~~~~~~~~ 245 (256) T 3na7_A 199 QACGGCFIRLNDKIYTEVLTSGDMITCPYCGR-----------ILYAEGAYESNAQPP 245 (256) T ss_dssp TBCTTTCCBCCHHHHHHHHHSSSCEECTTTCC-----------EEECSCC-------- T ss_pred CCCCCCCCCCCHHHHHHHHCCCCEEECCCCCC-----------EEEECCCCCCCCCCC T ss_conf 91688782438999999885999048989997-----------785066343345993 No 134 >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 Probab=60.91 E-value=2 Score=22.79 Aligned_cols=35 Identities=9% Similarity=0.327 Sum_probs=23.3 Q ss_pred EECCCCCCEEEHHHHHHHCCCCCCCCCCEECCHHHHHHH Q ss_conf 056676872217889863383889989624379999998 Q gi|254780820|r 27 VKCPETGAMVYHKDLKENQWVISSSDFHMKIPAKERLKF 65 (284) Q Consensus 27 ~kCp~C~~~i~~~~l~~n~~VCp~C~~H~rl~areRi~~ 65 (284) ..||.|++.+... .+-.+|++| |+|.+...-++++ T Consensus 3 ~~CP~C~~~L~~~---~~~l~C~~~-h~fd~~k~Gyv~l 37 (269) T 1p91_A 3 FSCPLCHQPLSRE---KNSYICPQR-HQFDMAKEGYVNL 37 (269) T ss_dssp BBCTTTCCBCEEE---TTEEECTTC-CEEEBCTTSCEEC T ss_pred EECCCCCCCCCCC---CCEEECCCC-CCCCCCCCCEEEC T ss_conf 7488999210168---987983899-5216566845732 No 135 >3ojg_A Phosphotriesterase; (beta/alpha)8 barrel, lactonase, hydrolase; HET: KCX HL4; 1.60A {Geobacillus kaustophilus} PDB: 3f4c_A* 3f4d_A* Probab=59.75 E-value=9.1 Score=17.88 Aligned_cols=106 Identities=15% Similarity=0.114 Sum_probs=62.4 Q ss_pred CCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC-EEEEECCC-CCCEEEEEEC Q ss_conf 577899999999999986289689997688877652124677778899999999862998-89985676-4201111201 Q gi|254780820|r 136 IGIAAGEAIVKSCERAIAEKCPLVMFTASGGARMQEGILSLMQLPRTTIAINMLKDAGLP-YIVVLTNP-TTGGVTASYA 213 (284) Q Consensus 136 mG~~~geki~~a~e~A~~~~~PlI~~~~SGGaRMqEG~~sL~qMakt~~a~~~l~~~~lP-~I~vl~~p-t~GGv~AS~a 213 (284) +....-+-+..+++.|.+.++|+++-+.. +++ + +- .+..+.+.+++ --+++.+- .++... ++ T Consensus 157 ~t~~e~~~f~a~~~~a~~tg~Pv~iH~~~--~~~--~---~e-------~~~~l~~~g~d~~~v~i~H~~~~~~~~--~~ 220 (330) T 3ojg_A 157 ITEYEKMFFRAAARAQKETGAVIITHTQE--GTM--G---PE-------QAAYLLEHGADPKKIVIGHMCGNTDPD--YH 220 (330) T ss_dssp CCHHHHHHHHHHHHHHHHHCCEEEEECST--TCC--H---HH-------HHHHHHHTTCCGGGEEECCGGGCCCHH--HH T ss_pred CCHHHHHHHHHHHHHHHHHCCCEEEECCC--CCC--C---HH-------HHHHHHHCCCCCCCEEEEECCCCCCHH--HH T ss_conf 99899999999999999829957997577--633--1---77-------899999738996676998079999899--99 Q ss_pred CCCCEEEEECCCEEECCCHHHHHHHHCCCCCCCCHHHH---HHHHCCCCCEEEC Q ss_conf 46852555314211023278878763677887202159---9996898353735 Q gi|254780820|r 214 MLGDIHLAEPGAEIGFAGRRVIEQTVREKLPDGFQRSE---YLVEHGMIDRIVH 264 (284) Q Consensus 214 ~lgDiiiaep~a~igFaG~rVi~~t~~~~lp~~fqtae---~l~~~G~iD~iv~ 264 (284) --+++.|+.|+|.|--- ...-..|.|+.+++ .+.+.|..|.|+= T Consensus 221 ----~~~l~~G~~i~~d~~g~---~~~~~~~~d~~r~~~i~~lv~~g~~drILl 267 (330) T 3ojg_A 221 ----RKTLAYGVYIAFDRFGI---QGMVGAPTDEERVRTLLALLRDGYEKQIML 267 (330) T ss_dssp ----HHHHTTTCEEEECCTTC---CSSTTCCCHHHHHHHHHHHHHTTCGGGEEE T ss_pred ----HHHHHCCCEEEECCCCC---CCCCCCCCHHHHHHHHHHHHHHCCCCCEEE T ss_conf ----99997497899666545---366779967899999999998578532998 No 136 >1lgy_A Lipase, triacylglycerol lipase; hydrolase (carboxylic ester); 2.20A {Rhizopus niveus} SCOP: c.69.1.17 PDB: 1tic_A Probab=58.62 E-value=1.7 Score=23.31 Aligned_cols=86 Identities=22% Similarity=0.226 Sum_probs=49.7 Q ss_pred HHHHHHCCCEEEEECCCCCCCCCCHHHHHHH--HHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCCEEEEEC--- Q ss_conf 9998628968999768887765212467777--88999999998629988998567642011112014685255531--- Q gi|254780820|r 149 ERAIAEKCPLVMFTASGGARMQEGILSLMQL--PRTTIAINMLKDAGLPYIVVLTNPTTGGVTASYAMLGDIHLAEP--- 223 (284) Q Consensus 149 e~A~~~~~PlI~~~~SGGaRMqEG~~sL~qM--akt~~a~~~l~~~~lP~I~vl~~pt~GGv~AS~a~lgDiiiaep--- 223 (284) +...+-..-.+-+....|.++|.|.....+. .....++.++.+..--+=.++|+-..||..|+.+.+ ++.--.| T Consensus 88 d~~~dl~~~~~~~~~~~~~~VH~GF~~~~~~~~~~i~~~v~~~~~~~~~~~i~vtGHSLGGAlA~L~a~-~l~~~~~~~~ 166 (269) T 1lgy_A 88 SAITDIVFNFSDYKPVKGAKVHAGFLSSYEQVVNDYFPVVQEQLTAHPTYKVIVTGHSLGGAQALLAGM-DLYQREPRLS 166 (269) T ss_dssp HHHHTCCCCEEECTTSTTCEEEHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEETHHHHHHHHHHH-HHHHHCTTCS T ss_pred HHHHHCCCCEECCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHH-HHHHHCCCCC T ss_conf 999849561001247898088526899999999999999999998789965999535750888999999-9997285557 Q ss_pred ---CCEEECCCHHHH Q ss_conf ---421102327887 Q gi|254780820|r 224 ---GAEIGFAGRRVI 235 (284) Q Consensus 224 ---~a~igFaG~rVi 235 (284) -..+.|+.|||= T Consensus 167 ~~~i~v~tFG~PrvG 181 (269) T 1lgy_A 167 PKNLSIFTVGGPRVG 181 (269) T ss_dssp TTTEEEEEESCCCCB T ss_pred CCCCEEEEECCCCCC T ss_conf 887439985899757 No 137 >2jr7_A DPH3 homolog; DESR1, CSL zinc finger, metal binding protein; NMR {Homo sapiens} Probab=58.13 E-value=7.9 Score=18.31 Aligned_cols=44 Identities=20% Similarity=0.499 Sum_probs=32.6 Q ss_pred CCCEECCCCCCE--EEHHHHHHHCCC--CCCCCCCEECCHHHHHHHHCCCCCCCCCC Q ss_conf 601056676872--217889863383--88998962437999999845565420133 Q gi|254780820|r 24 NLWVKCPETGAM--VYHKDLKENQWV--ISSSDFHMKIPAKERLKFLFDNAKYCLLD 76 (284) Q Consensus 24 ~lW~kCp~C~~~--i~~~~l~~n~~V--Cp~C~~H~rl~areRi~~l~D~gsf~Ei~ 76 (284) -...-|| ||.. +...+|++..-| ||.|.-..|+ +||...|.+-. T Consensus 21 ~~~ypCr-CGd~F~It~~dL~~ge~v~~C~sCSL~IrV--------ifd~e~~~~~~ 68 (89) T 2jr7_A 21 TYFYPCP-CGDNFSITKEDLENGEDVATCPSCSLIIKV--------IYDKDQFVSGE 68 (89) T ss_dssp EEEEECT-TSSEEEEEHHHHHHTCCEEECTTTCCEEEE--------ECCHHHHCCSS T ss_pred EEEECCC-CCCEEEECHHHHHCCCEEEECCCCCCEEEE--------EECHHHCCCCC T ss_conf 8985378-899889879998589949968999628999--------97577855555 No 138 >2axo_A Hypothetical protein ATU2684; alpha beta protein., structural genomics, PSI, protein structure initiative; 1.80A {Agrobacterium tumefaciens str} SCOP: c.47.1.19 Probab=57.43 E-value=9.9 Score=17.61 Aligned_cols=91 Identities=16% Similarity=0.107 Sum_probs=56.9 Q ss_pred CCCCCCCEECCHHHHHHHHCCCCCCCCCCCCCCCCHHCCCCCC---CCHHHHHHHHHHHCCCCCCEEEEEEEEECEEEEE Q ss_conf 8899896243799999984556542013345687020186764---2035667766642166771699987870414999 Q gi|254780820|r 48 ISSSDFHMKIPAKERLKFLFDNAKYCLLDQPQVCQDPLKFRDN---KKYIDRLKENRSKTGLIDSIVSAVGNVRDFKLVA 124 (284) Q Consensus 48 Cp~C~~H~rl~areRi~~l~D~gsf~Ei~~~~~~~DPL~F~d~---k~Y~drl~~a~~kTg~~davv~G~G~I~G~~vvv 124 (284) |+.| -+|.+-++-|.++....-+..+.--=|.|.|+|. +.|.+|-+.+.+.-|. ..+-|-.--|||+.-+ T Consensus 54 CSSC-----PpAD~~L~~L~~~~dVi~La~HVdYWDylGWkD~Fa~~~~t~RQr~Ya~~~~~-~~vYTPq~VVnG~~~~- 126 (270) T 2axo_A 54 CASC-----PPADEALRKMIQKGDVVGLSYHVDYWNYLGWTDSLASKENTERQYGYMRALGR-NGVYTPQAILNGRDHV- 126 (270) T ss_dssp CTTC-----HHHHHHHHHHHHHTSSEEEEEECSTTCSSSSCCTTCCHHHHHHHHHHHHHTTC-SCCCSSEEEETTTEEE- T ss_pred CCCC-----HHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC-CCCCCCEEEEECEECC- T ss_conf 9997-----88999999974489989999636631236987877696789999999986189-9884997999381356- Q ss_pred EEEECHHHCCCCCHHHHHHHHHHHHHHHHHCCC Q ss_conf 998330318535778999999999999862896 Q gi|254780820|r 125 VVHEFSFIGGSIGIAAGEAIVKSCERAIAEKCP 157 (284) Q Consensus 125 ~~~df~F~GGSmG~~~geki~~a~e~A~~~~~P 157 (284) .||= .+.+..+++.+....-| T Consensus 127 --------~gs~----~~~~~~~i~~~~~~~~~ 147 (270) T 2axo_A 127 --------KGAD----VRGIYDRLDAFKREGQG 147 (270) T ss_dssp --------ETTC----HHHHHHHHHHHHHTTCS T ss_pred --------CCCC----HHHHHHHHHHHHHCCCC T ss_conf --------6578----78999999987721777 No 139 >2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Probab=57.04 E-value=5.2 Score=19.65 Aligned_cols=40 Identities=18% Similarity=0.311 Sum_probs=25.1 Q ss_pred EECCCCCCEEEH--HHHHH-------HCCCCCCCCCCEECCHHHHHHHH Q ss_conf 056676872217--88986-------33838899896243799999984 Q gi|254780820|r 27 VKCPETGAMVYH--KDLKE-------NQWVISSSDFHMKIPAKERLKFL 66 (284) Q Consensus 27 ~kCp~C~~~i~~--~~l~~-------n~~VCp~C~~H~rl~areRi~~l 66 (284) .+||.|+...|. ..|.. .-|.|+.|+.-|+-...-+.-+. T Consensus 35 ~~C~~C~k~~f~~~~~l~~H~~~h~~~~~~C~~C~k~F~~~~~L~~H~~ 83 (96) T 2ctd_A 35 VSCPTCQAVGRKTIEGLKKHMENCKQEMFTCHHCGKQLRSLAGMKYHVM 83 (96) T ss_dssp EECTTTCSCEESSHHHHHHHHHHHCCCCCCCSSSCCCCSSHHHHHHHHH T ss_pred EECCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEECCHHHHHHHCC T ss_conf 7999999354639999999998858979979985996676277998705 No 140 >2yre_A F-box only protein 30; zinc binding, E3 ubiquitin ligase, SCF, structural genomics, NPPSFA; NMR {Homo sapiens} Probab=57.04 E-value=5.5 Score=19.48 Aligned_cols=37 Identities=14% Similarity=0.183 Sum_probs=27.8 Q ss_pred CCEECCC-CCCEEEHHHHHHHCCCCCC----CCC-----CEECCHHH Q ss_conf 0105667-6872217889863383889----989-----62437999 Q gi|254780820|r 25 LWVKCPE-TGAMVYHKDLKENQWVISS----SDF-----HMKIPAKE 61 (284) Q Consensus 25 lW~kCp~-C~~~i~~~~l~~n~~VCp~----C~~-----H~rl~are 61 (284) .-+.||. |+..+...+|++-..+||+ |-| .+++.-.+ T Consensus 36 ~~i~C~~~Cg~~~~r~~l~~H~~~Cp~~~v~C~~~~~GC~~~~~r~~ 82 (100) T 2yre_A 36 DLIGCPLVCGAVFHSCKADEHRLLCPFERVPCLNSDFGCPFTMARNK 82 (100) T ss_dssp CEEECTTCCSCEEEHHHHHHHHHHCSSSEEECTTTTTTCCCEEESST T ss_pred EECCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCEECHHH T ss_conf 23568886557202769999999848985228777899987413999 No 141 >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase- inhibitor complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Probab=56.92 E-value=2.7 Score=21.78 Aligned_cols=117 Identities=15% Similarity=0.072 Sum_probs=55.7 Q ss_pred CCCCCCCCEECCCCCCEEEHHHHHH---HCCCCCCCCCCEECCHHHH----------HHHHCCCCCCCCCCC--CCC-CC Q ss_conf 2477460105667687221788986---3383889989624379999----------998455654201334--568-70 Q gi|254780820|r 19 RAIPENLWVKCPETGAMVYHKDLKE---NQWVISSSDFHMKIPAKER----------LKFLFDNAKYCLLDQ--PQV-CQ 82 (284) Q Consensus 19 k~ip~~lW~kCp~C~~~i~~~~l~~---n~~VCp~C~~H~rl~areR----------i~~l~D~gsf~Ei~~--~~~-~~ 82 (284) -.+|++- .-|++|++.+-..+... ....||+||..+...++-+ |.-.+..|.|-.+.. +.. .. T Consensus 28 p~~p~~~-r~c~~Cg~~~~~~~~~~~~~~~~~c~~cg~~~~~~p~l~~G~~i~grY~i~~~lG~Gg~G~Vy~a~d~~~~~ 106 (681) T 2pzi_A 28 PVVPESK-RFCWNCGRPVGRSDSETKGASEGWCPYCGSPYSFLPQLNPGDIVAGQYEVKGCIAHGGLGWIYLALDRNVNG 106 (681) T ss_dssp CCCCGGG-CBCTTTCCBCSCC-----CCSEEECTTTCCEEECSCSSCTTCEETTTEEEEEEEEEETTEEEEEEEEGGGTT T ss_pred CCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCEEEEEEEEECCCEEEEEEEEECCCC T ss_conf 9998767-665224895777778888766776888999677899999999889726997898417892899999837999 Q ss_pred HH-----CCCCCCCCHHHHH-HHHHHHCCC-CCCEEEEEEEE-----ECEEEEEEEEECHHHCCCCC Q ss_conf 20-----1867642035667-766642166-77169998787-----04149999983303185357 Q gi|254780820|r 83 DP-----LKFRDNKKYIDRL-KENRSKTGL-IDSIVSAVGNV-----RDFKLVAVVHEFSFIGGSIG 137 (284) Q Consensus 83 DP-----L~F~d~k~Y~drl-~~a~~kTg~-~davv~G~G~I-----~G~~vvv~~~df~F~GGSmG 137 (284) .+ |.........+++ .+++--..+ +..|+.-++.. .+.+....+|+| .-|+|+- T Consensus 107 ~~valK~l~~~~~~~~~~~~~~E~~~l~~l~HpnIv~~~~~~~~~~~~~~~~~ylVmEy-v~G~~L~ 172 (681) T 2pzi_A 107 RPVVLKGLVHSGDAEAQAMAMAERQFLAEVVHPSIVQIFNFVEHTDRHGDPVGYIVMEY-VGGQSLK 172 (681) T ss_dssp EEEEEEESCSSCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEEECTTSCEEEEEEEEC-CCCEECC T ss_pred EEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCEEEEEEC-CCCCCHH T ss_conf 39999998812486899999999999985799698948899986787778505999958-8997299 No 142 >1wge_A Hypothetical protein 2610018L09RIK; diphthamide,CSL zinc finger, ADP-ribosylating toxin, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.17.1 Probab=56.87 E-value=6.7 Score=18.83 Aligned_cols=44 Identities=20% Similarity=0.493 Sum_probs=32.0 Q ss_pred CCEECCCCCCE--EEHHHHHHHCCC--CCCCCCCEECCHHHHHHHHCCCCCCCCCCC Q ss_conf 01056676872--217889863383--889989624379999998455654201334 Q gi|254780820|r 25 LWVKCPETGAM--VYHKDLKENQWV--ISSSDFHMKIPAKERLKFLFDNAKYCLLDQ 77 (284) Q Consensus 25 lW~kCp~C~~~--i~~~~l~~n~~V--Cp~C~~H~rl~areRi~~l~D~gsf~Ei~~ 77 (284) ...-|| ||.. +...+|++..-| ||.|.-+.|+ +||...|...+. T Consensus 29 ~~ypCr-CGd~F~it~~dL~~ge~V~~C~sCSL~IrV--------iy~~e~~~~~~~ 76 (83) T 1wge_A 29 YFYPCP-CGDNFAITKEDLENGEDVATCPSCSLIIKV--------IYDKDQFMCGET 76 (83) T ss_dssp EEECCS-SSSCEEEEHHHHHTTCCEEECTTTCCEEEE--------ECCHHHHHTTTC T ss_pred EEECCC-CCCEEEECHHHHHCCCCEEECCCCCCEEEE--------EECHHHHCCCCC T ss_conf 985789-899898879998689919819998638999--------986478323552 No 143 >2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor} Probab=56.76 E-value=2.1 Score=22.58 Aligned_cols=32 Identities=16% Similarity=0.210 Sum_probs=23.6 Q ss_pred CEECCCCCCEEEHHHHHHHCCCCCCCCCCEECC Q ss_conf 105667687221788986338388998962437 Q gi|254780820|r 26 WVKCPETGAMVYHKDLKENQWVISSSDFHMKIP 58 (284) Q Consensus 26 W~kCp~C~~~i~~~~l~~n~~VCp~C~~H~rl~ 58 (284) +.-||.|+..+...+ +++.-+|+.|+.-|++. T Consensus 10 iL~CP~ck~~L~~~~-~~~~L~c~~~~laYPI~ 41 (56) T 2kpi_A 10 ILACPACHAPLEERD-AELICTGQDCGLAYPVR 41 (56) T ss_dssp SCCCSSSCSCEEEET-TEEEECSSSCCCEEEEE T ss_pred HHCCCCCCCCCEECC-CCCEEECCCCCEEEECC T ss_conf 733889999451828-76889738888354450 No 144 >2gnr_A Conserved hypothetical protein; 13815350, structural genomics, PSI, protein structure initiative; 1.80A {Sulfolobus solfataricus P2} SCOP: b.40.4.15 PDB: 3irb_A Probab=56.75 E-value=3.2 Score=21.22 Aligned_cols=25 Identities=12% Similarity=0.137 Sum_probs=19.9 Q ss_pred CCEECCCCCCEEEHHHHHHHCCCCCCCCCC Q ss_conf 010566768722178898633838899896 Q gi|254780820|r 25 LWVKCPETGAMVYHKDLKENQWVISSSDFH 54 (284) Q Consensus 25 lW~kCp~C~~~i~~~~l~~n~~VCp~C~~H 54 (284) +=.+|++|+...+-+. .+||+|+-. T Consensus 46 ~~~rC~~Cg~~~~Ppr-----~~Cp~C~s~ 70 (145) T 2gnr_A 46 IGSKCSKCGRIFVPAR-----SYCEHCFVK 70 (145) T ss_dssp EEEECTTTCCEEESCC-----SEETTTTEE T ss_pred EEEECCCCCCEEECCC-----CCCCCCCCC T ss_conf 9998799995883960-----117799998 No 145 >1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1 Probab=55.90 E-value=1.3 Score=24.15 Aligned_cols=31 Identities=13% Similarity=0.110 Sum_probs=24.3 Q ss_pred CEECCCCCCEEEHHHHHHHCCCC--CCCCCCEEC Q ss_conf 10566768722178898633838--899896243 Q gi|254780820|r 26 WVKCPETGAMVYHKDLKENQWVI--SSSDFHMKI 57 (284) Q Consensus 26 W~kCp~C~~~i~~~~l~~n~~VC--p~C~~H~rl 57 (284) +..||+|+..+.+. -.=|...| +.|++||=- T Consensus 6 tK~CP~C~~~IeK~-~GCnhm~C~~~~C~~~FCw 38 (60) T 1wd2_A 6 TKECPKCHVTIEKD-GGCNHMVCRNQNCKAEFCW 38 (60) T ss_dssp CCCCTTTCCCCSSC-CSCCSSSCCSSGGGSCCSS T ss_pred CCCCCCCCCEEEEC-CCCCCEEECCCCCCCEEEC T ss_conf 85996999988868-8988659789999980977 No 146 >2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium; NMR {Neisseria meningitidis Z2491} Probab=54.67 E-value=1.7 Score=23.18 Aligned_cols=30 Identities=13% Similarity=0.234 Sum_probs=22.8 Q ss_pred EECCCCCCEEEHHHHHHHCCCCCCCCCCEEC Q ss_conf 0566768722178898633838899896243 Q gi|254780820|r 27 VKCPETGAMVYHKDLKENQWVISSSDFHMKI 57 (284) Q Consensus 27 ~kCp~C~~~i~~~~l~~n~~VCp~C~~H~rl 57 (284) .-||.|+..+...+ +++--||+.|+.-|++ T Consensus 9 L~CP~ck~~L~~~~-~~~eLvc~~~~~~YPI 38 (68) T 2jr6_A 9 LVCPVTKGRLEYHQ-DKQELWSRQAKLAYPI 38 (68) T ss_dssp CBCSSSCCBCEEET-TTTEEEETTTTEEEEE T ss_pred HCCCCCCCEEEEEC-CCCEEECCCCCCCCCC T ss_conf 07879898728968-8998971876965634 No 147 >1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIRON center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A Probab=54.48 E-value=2.8 Score=21.62 Aligned_cols=11 Identities=18% Similarity=0.003 Sum_probs=5.1 Q ss_pred HHHHHHHHHCC Q ss_conf 99999986289 Q gi|254780820|r 146 KSCERAIAEKC 156 (284) Q Consensus 146 ~a~e~A~~~~~ 156 (284) ..++.|.+.+- T Consensus 125 ~~a~~A~~eGd 135 (202) T 1yuz_A 125 AFIRKAQEEGN 135 (202) T ss_dssp HHHHHHHHHTC T ss_pred HHHHHHHHCCC T ss_conf 99999998698 No 148 >3kuu_A Phosphoribosylaminoimidazole carboxylase catalytic subunit PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structural genomics; 1.41A {Yersinia pestis} PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A* Probab=54.43 E-value=6.3 Score=19.04 Aligned_cols=41 Identities=17% Similarity=0.314 Sum_probs=30.1 Q ss_pred HHHHCCCEEEEECCCC-CCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECC Q ss_conf 9862896899976888-776521246777788999999998629988998567 Q gi|254780820|r 151 AIAEKCPLVMFTASGG-ARMQEGILSLMQLPRTTIAINMLKDAGLPYIVVLTN 202 (284) Q Consensus 151 A~~~~~PlI~~~~SGG-aRMqEG~~sL~qMakt~~a~~~l~~~~lP~I~vl~~ 202 (284) |....+|+|.+.-++| .-+..+.+|..||| .|+|.-++..+ T Consensus 86 Aa~T~~PVIgvP~~~~~l~G~d~llS~vqMP-----------~GvPVatv~i~ 127 (174) T 3kuu_A 86 AAKTLVPVLGVPVQSAALSGVDSLYSIVQMP-----------RGIPVGTLAIG 127 (174) T ss_dssp HHTCSSCEEEEEECCTTTTTHHHHHHHHTCC-----------TTSCCEECCSS T ss_pred HHHCCCCEEECCCCCCCCCCCCHHHHHHHCC-----------CCCCCEEEECC T ss_conf 6616543561134445667610388997187-----------88985688648 No 149 >1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1 Probab=53.38 E-value=2.3 Score=22.27 Aligned_cols=25 Identities=16% Similarity=0.511 Sum_probs=17.5 Q ss_pred EECCCCCCEEEHHH----------------HHHHCCCCCCCCC Q ss_conf 05667687221788----------------9863383889989 Q gi|254780820|r 27 VKCPETGAMVYHKD----------------LKENQWVISSSDF 53 (284) Q Consensus 27 ~kCp~C~~~i~~~~----------------l~~n~~VCp~C~~ 53 (284) ..|..|+ .+|..+ |- ..|+||.|+- T Consensus 36 y~C~~Cg-yiYDp~~Gd~~~gi~pGT~FedLP-~dw~CP~Cg~ 76 (87) T 1s24_A 36 WICITCG-HIYDEALGDEAEGFTPGTRFEDIP-DDWCCPDCGA 76 (87) T ss_dssp EEETTTT-EEEETTSCCTTTTCCSCCCGGGCC-TTCCCSSSCC T ss_pred EECCCCC-CEECCCCCCCCCCCCCCCCHHHCC-CCCCCCCCCC T ss_conf 8899999-187666588455869999877889-9886849988 No 150 >1tia_A Lipase; hydrolase(carboxylic esterase); 2.10A {Penicillium camemberti} SCOP: c.69.1.17 Probab=53.02 E-value=3.7 Score=20.79 Aligned_cols=71 Identities=18% Similarity=0.208 Sum_probs=39.5 Q ss_pred CCCCCCCCCHHHHHHH--HHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCCEEE-E-ECCCEEECCCHHHH Q ss_conf 8887765212467777--88999999998629988998567642011112014685255-5-31421102327887 Q gi|254780820|r 164 SGGARMQEGILSLMQL--PRTTIAINMLKDAGLPYIVVLTNPTTGGVTASYAMLGDIHL-A-EPGAEIGFAGRRVI 235 (284) Q Consensus 164 SGGaRMqEG~~sL~qM--akt~~a~~~l~~~~lP~I~vl~~pt~GGv~AS~a~lgDiii-a-ep~a~igFaG~rVi 235 (284) ..|.+.|.|.....+. .++...+.++.+..--+=.++|+-..||..|+.+.+ ++.- . .+-..+.|+.|||- T Consensus 103 ~~~~~vH~GF~~~~~~~~~~i~~~i~~~~~~~~~~~i~iTGHSLGGAlA~L~a~-~l~~~~~~~i~~~tFG~PrvG 177 (279) T 1tia_A 103 CDGCLAELGFWSSWKLVRDDIIKELKEVVAQNPNYELVVVGHSLGAAVATLAAT-DLRGKGYPSAKLYAYASPRVG 177 (279) T ss_pred CCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHH-HHHHCCCCCEEEEEECCCCCC T ss_conf 999497188999999999999999999986489955998456358999999999-998559984479984899747 No 151 >2g45_A Ubiquitin carboxyl-terminal hydrolase 5; zinc finger, hydrolase; 1.99A {Homo sapiens} SCOP: g.44.1.5 PDB: 2g43_A Probab=53.01 E-value=3.2 Score=21.26 Aligned_cols=26 Identities=31% Similarity=0.618 Sum_probs=19.5 Q ss_pred CCCCCCCEECCCCCCEEEHHHHHHHCCCCCCCCC Q ss_conf 4774601056676872217889863383889989 Q gi|254780820|r 20 AIPENLWVKCPETGAMVYHKDLKENQWVISSSDF 53 (284) Q Consensus 20 ~ip~~lW~kCp~C~~~i~~~~l~~n~~VCp~C~~ 53 (284) .+|...| +|..|+.. .|+|+|-.||| T Consensus 29 ~~~~~~~-~C~~C~~~-------~~lW~CL~CG~ 54 (129) T 2g45_A 29 RIPPCGW-KCSKCDMR-------ENLWLNLTDGS 54 (129) T ss_dssp CCCCCBC-CCSSSSCC-------SSEEEETTTCC T ss_pred CCCCCCC-CCCCCCCC-------CCEEEEEECCC T ss_conf 3799888-45564886-------86489874787 No 152 >2c46_A MRNA capping enzyme; guanylyltransferase, phosphatase, transferase, alternative splicing, hydrolase, mRNA processing, multifunctional enzyme; 1.6A {Homo sapiens} PDB: 1i9s_A 1i9t_A Probab=52.67 E-value=4.2 Score=20.38 Aligned_cols=22 Identities=32% Similarity=0.816 Sum_probs=17.0 Q ss_pred CCCCCCCCCCCEECCCCCCEEEH Q ss_conf 42224774601056676872217 Q gi|254780820|r 16 FGRRAIPENLWVKCPETGAMVYH 38 (284) Q Consensus 16 ~~kk~ip~~lW~kCp~C~~~i~~ 38 (284) .....+|++ |.+||.||+.|-. T Consensus 23 ~~~n~iP~r-W~~~p~~g~~I~~ 44 (241) T 2c46_A 23 MAHNKIPPR-WLNCPRRGQPVAG 44 (241) T ss_dssp CTTCCCCTT-CTTSCSBCCCBTT T ss_pred CCCCCCCCH-HHCCCCCCCCCCC T ss_conf 103789814-2129987777689 No 153 >2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Probab=52.55 E-value=5.5 Score=19.50 Aligned_cols=21 Identities=5% Similarity=0.132 Sum_probs=15.2 Q ss_pred CCCCCCCCCCEECCHHHHHHH Q ss_conf 383889989624379999998 Q gi|254780820|r 45 QWVISSSDFHMKIPAKERLKF 65 (284) Q Consensus 45 ~~VCp~C~~H~rl~areRi~~ 65 (284) -..||+|+-||++.---|-.+ T Consensus 12 ~raCPkCn~~Fnl~dpLk~HM 32 (49) T 2e72_A 12 RKICPRCNAQFRVTEALRGHM 32 (49) T ss_dssp CCCCTTTCCCCSSHHHHHHHH T ss_pred CCCCCCCCCEEECCHHHHHHH T ss_conf 754874454245507776045 No 154 >2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A* Probab=52.31 E-value=0.71 Score=26.04 Aligned_cols=134 Identities=18% Similarity=0.280 Sum_probs=57.2 Q ss_pred HCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCEEE-- Q ss_conf 185357789999999999998628968999768887765212467777889999999986299889985676420111-- Q gi|254780820|r 132 IGGSIGIAAGEAIVKSCERAIAEKCPLVMFTASGGARMQEGILSLMQLPRTTIAINMLKDAGLPYIVVLTNPTTGGVT-- 209 (284) Q Consensus 132 ~GGSmG~~~geki~~a~e~A~~~~~PlI~~~~SGGaRMqEG~~sL~qMakt~~a~~~l~~~~lP~I~vl~~pt~GGv~-- 209 (284) .+|+||...+-.+-.+. |. ..-|+|+++.=|+.-|. + .++....+.++|.+.|+.|.-.+|.. T Consensus 423 ~~g~mG~~l~~Aigaa~--a~-p~~~vv~i~GDgsf~~~--~----------~~L~ta~~~~~~i~iiv~NN~g~g~~~~ 487 (570) T 2vbf_A 423 LWGSIGYTFPAALGSQI--AD-KESRHLLFIGDGSLQLT--V----------QELGLSIREKLNPICFIINNDGYTVERE 487 (570) T ss_dssp TTCCTTTHHHHHHHHHH--HC-TTSEEEEEEEHHHHHHH--G----------GGHHHHHHTTCCCEEEEEESSSCHHHHH T ss_pred CCCCCCCCCCHHHHHHH--HC-CCCCEEEEECHHHHHHH--H----------HHHHHHHHCCCCEEEEEEECCCCCEEEE T ss_conf 65777766507888887--28-99978999891686332--9----------9999999809891999996898853460 Q ss_pred -----EEECCCCCEEEEECCCEEECCCHHHHHHHHCCCCCCCCHHH--HHHHHC-C--CCCEEECHHHHHHHHHHHHHHH Q ss_conf -----12014685255531421102327887876367788720215--999968-9--8353735899999999999997 Q gi|254780820|r 210 -----ASYAMLGDIHLAEPGAEIGFAGRRVIEQTVREKLPDGFQRS--EYLVEH-G--MIDRIVHRHDIPEVVSSLCKIL 279 (284) Q Consensus 210 -----AS~a~lgDiiiaep~a~igFaG~rVi~~t~~~~lp~~fqta--e~l~~~-G--~iD~iv~r~~l~~~i~~ll~il 279 (284) .+|..+.++-++.=-.-.|..|-||.-.++ +-+++++.+ +.+.++ | +||..|+|.|.-..+.++-+.+ T Consensus 488 ~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~~~~v--~~~~el~~al~~a~~~~~~p~liev~vd~~~~~~~l~~~~~~~ 565 (570) T 2vbf_A 488 IHGPTQSYNDIPMWNYSKLPETFGATEDRVVSKIV--RTENEFVSVMKEAQADVNRMYWIELVLEKEDAPKLLKKMGKLF 565 (570) T ss_dssp HSCTTCGGGCCCCCCGGGHHHHTTCCTTTEEEEEE--CBHHHHHHHHHHHHHCTTSEEEEEEECCTTCCCHHHHHHHHHH T ss_pred ECCCCCCCCCCCCCCHHHHHHHCCCCEEEECEEEC--CCHHHHHHHHHHHHHCCCCEEEEEEEECHHHCCHHHHHHHHHH T ss_conf 01686676879999999999987996065310210--8999999999999867998499999988065479999999999 Q ss_pred HCC Q ss_conf 237 Q gi|254780820|r 280 TKS 282 (284) Q Consensus 280 ~~~ 282 (284) .+. T Consensus 566 ~~~ 568 (570) T 2vbf_A 566 AEQ 568 (570) T ss_dssp HHH T ss_pred HHH T ss_conf 974 No 155 >2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50} Probab=52.13 E-value=2.1 Score=22.57 Aligned_cols=39 Identities=8% Similarity=0.310 Sum_probs=25.7 Q ss_pred CEECCCCCCEEEHHHHHHHCCCCCCCCCCEECCHHHHHHHHC Q ss_conf 105667687221788986338388998962437999999845 Q gi|254780820|r 26 WVKCPETGAMVYHKDLKENQWVISSSDFHMKIPAKERLKFLF 67 (284) Q Consensus 26 W~kCp~C~~~i~~~~l~~n~~VCp~C~~H~rl~areRi~~l~ 67 (284) ..-||.|+..+...+ +++.-||+.|+.-|++ ++=|-.|+ T Consensus 8 iL~CP~ck~~L~~~~-~~~eLvc~~~~~aYPI--~dGIPvLL 46 (70) T 2js4_A 8 ILVCPVCKGRLEFQR-AQAELVCNADRLAFPV--RDGVPIML 46 (70) T ss_dssp CCBCTTTCCBEEEET-TTTEEEETTTTEEEEE--ETTEECCC T ss_pred HHCCCCCCCEEEEEC-CCCEEECCCCCCCCCC--CCCCCCCC T ss_conf 706879998726938-8998954864865634--38930308 No 156 >1tgl_A Triacyl-glycerol acylhydrolase; hydrolase(carboxylic esterase); 1.90A {Rhizomucor miehei} SCOP: c.69.1.17 PDB: 4tgl_A 5tgl_A* 3tgl_A Probab=52.06 E-value=5.9 Score=19.26 Aligned_cols=71 Identities=21% Similarity=0.198 Sum_probs=37.9 Q ss_pred CCCCCCCCCCHHHHHHH--HHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCCEEEEE---CC---CEEECCCHHH Q ss_conf 68887765212467777--8899999999862998899856764201111201468525553---14---2110232788 Q gi|254780820|r 163 ASGGARMQEGILSLMQL--PRTTIAINMLKDAGLPYIVVLTNPTTGGVTASYAMLGDIHLAE---PG---AEIGFAGRRV 234 (284) Q Consensus 163 ~SGGaRMqEG~~sL~qM--akt~~a~~~l~~~~lP~I~vl~~pt~GGv~AS~a~lgDiiiae---p~---a~igFaG~rV 234 (284) ...|.++|.|.....+. ..+..++.++.+..--+=.++|+-..||..|+.+.+ ++.-.. +. ..+.|+.||| T Consensus 101 ~~~~~~VH~GF~~~~~~~~~~i~~~i~~~~~~~~~~~i~~tGHSLGGAlA~l~a~-~l~~~~~~~~~~~i~~~TFG~Prv 179 (269) T 1tgl_A 101 PVSGTKVHKGFLDSYGEVQNELVATVLDQFKQYPSYKVAVTGHSLGGATALLCAL-DLYQREEGLSSSNLFLYTQGQPRV 179 (269) T ss_pred CCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHH-HHHHHCCCCCCCCCCEEECCCCCC T ss_conf 8999788299999999888899999999998689955787135678999999999-999734367766655355179975 No 157 >2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1 Probab=51.06 E-value=2.1 Score=22.60 Aligned_cols=30 Identities=17% Similarity=0.308 Sum_probs=22.7 Q ss_pred EECCCCCCEEEHHHHHHHCCCCCCCCCCEEC Q ss_conf 0566768722178898633838899896243 Q gi|254780820|r 27 VKCPETGAMVYHKDLKENQWVISSSDFHMKI 57 (284) Q Consensus 27 ~kCp~C~~~i~~~~l~~n~~VCp~C~~H~rl 57 (284) .-||.|+..+...+ +++--||+.|+.-|++ T Consensus 11 L~CP~~k~~L~~~~-~~~~Lvc~~~~~~YPI 40 (67) T 2jny_A 11 LACPKDKGPLRYLE-SEQLLVNERLNLAYRI 40 (67) T ss_dssp CBCTTTCCBCEEET-TTTEEEETTTTEEEEE T ss_pred HCCCCCCCCCEEEC-CCCEEECCCCCCCCCC T ss_conf 45879898406968-8998976876844735 No 158 >2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Probab=50.34 E-value=6.8 Score=18.83 Aligned_cols=25 Identities=8% Similarity=0.093 Sum_probs=21.0 Q ss_pred CCEECCCCCCEEEHHHHHHHCCCCC Q ss_conf 0105667687221788986338388 Q gi|254780820|r 25 LWVKCPETGAMVYHKDLKENQWVIS 49 (284) Q Consensus 25 lW~kCp~C~~~i~~~~l~~n~~VCp 49 (284) -+++|+-|++.+..++++.....|| T Consensus 9 R~v~C~~C~~~~~~~~~~~H~~~C~ 33 (66) T 2eod_A 9 RTQPCTYCTKEFVFDTIQSHQYQCP 33 (66) T ss_dssp CEEECSSSCCEEEHHHHHHHHHHCS T ss_pred CCCCCCCCCCCCCHHHHHHHHHHCC T ss_conf 2665999988115889999987589 No 159 >2waq_P DNA-directed RNA polymerase RPO12 subunit; multi-subunit, transcription; 3.35A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 3hkz_P Probab=50.11 E-value=2.2 Score=22.46 Aligned_cols=29 Identities=10% Similarity=0.115 Sum_probs=21.6 Q ss_pred EECCCCCCEEEHHHHHHHCC-CCCCCCCCE Q ss_conf 05667687221788986338-388998962 Q gi|254780820|r 27 VKCPETGAMVYHKDLKENQW-VISSSDFHM 55 (284) Q Consensus 27 ~kCp~C~~~i~~~~l~~n~~-VCp~C~~H~ 55 (284) .+|-.|+......||+.--- -||.|||-. T Consensus 4 Y~C~rCg~~~~~~eL~~LP~IrCPyCGfri 33 (48) T 2waq_P 4 YRCGKCWKTFTDEQLKVLPGVRCPYCGYKI 33 (48) T ss_dssp --CCCCSSSCCCCCSCCCSSSSCTTTCCCC T ss_pred EEECCCCCCCCHHHHHHCCCCCCCCCCCEE T ss_conf 884136778068788457886446357189 No 160 >1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2 Probab=50.04 E-value=10 Score=17.57 Aligned_cols=34 Identities=3% Similarity=0.063 Sum_probs=22.2 Q ss_pred CCCCCCCEECCCCCCEEEHH-------HHHH-HCCCCCCCCC Q ss_conf 47746010566768722178-------8986-3383889989 Q gi|254780820|r 20 AIPENLWVKCPETGAMVYHK-------DLKE-NQWVISSSDF 53 (284) Q Consensus 20 ~ip~~lW~kCp~C~~~i~~~-------~l~~-n~~VCp~C~~ 53 (284) .-++.+|+.|..|..=.+.+ +... ..|+||.|-- T Consensus 21 ~~~~~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~~C~~C~~ 62 (79) T 1wep_A 21 YNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEA 62 (79) T ss_dssp CCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTT T ss_pred CCCCCCEEECCCCCCEEEEEEECCCHHHCCCCCEEECCCCCC T ss_conf 599975878899998504453154634368898389968808 No 161 >2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious disease, electron transport; NMR {Mycobacterium tuberculosis} Probab=49.69 E-value=3 Score=21.44 Aligned_cols=26 Identities=15% Similarity=0.562 Sum_probs=17.4 Q ss_pred CEECCCCCCEEEHHH----------------HHHHCCCCCCCCC Q ss_conf 105667687221788----------------9863383889989 Q gi|254780820|r 26 WVKCPETGAMVYHKD----------------LKENQWVISSSDF 53 (284) Q Consensus 26 W~kCp~C~~~i~~~~----------------l~~n~~VCp~C~~ 53 (284) =..|+.|+ .+|.++ |- ..|+||.|+- T Consensus 27 ~y~C~~Cg-yiYDp~~GD~~~gippGT~F~dLP-~dw~CP~Cga 68 (81) T 2kn9_A 27 LFRCIQCG-FEYDEALGWPEDGIAAGTRWDDIP-DDWSCPDCGA 68 (81) T ss_dssp EEEETTTC-CEEETTTCBTTTTBCTTCCTTTSC-TTCCCTTTCC T ss_pred EEECCCCC-EEECCCCCCCCCCCCCCCCHHHCC-CCCCCCCCCC T ss_conf 59829999-387666588456879889765789-8886929998 No 162 >2w7t_A CTP synthetase, putative cytidine triphosphate synthase; glutaminase domain, trypsanosoma brucei, ligase, acivicin; HET: 5CS; 2.10A {Trypanosoma brucei} Probab=49.64 E-value=10 Score=17.44 Aligned_cols=30 Identities=13% Similarity=0.151 Sum_probs=25.2 Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCEEEEEC Q ss_conf 535778999999999999862896899976 Q gi|254780820|r 134 GSIGIAAGEAIVKSCERAIAEKCPLVMFTA 163 (284) Q Consensus 134 GSmG~~~geki~~a~e~A~~~~~PlI~~~~ 163 (284) |-+|...-|-...|+++|.++++|++.+|- T Consensus 75 gGFG~RG~eGkI~Ai~yARen~iPfLGICl 104 (273) T 2w7t_A 75 GGFGNRGVDGKCAAAQVARMNNIPYFGVXL 104 (273) T ss_dssp CCCTTTTHHHHHHHHHHHHHHTCCEEEETH T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCHHHHH T ss_conf 857877647899999999974886024556 No 163 >2v4u_A CTP synthase 2; pyrimidine biosynthesis, glutamine amidotransferase, glutaminase domain, 5-OXO-L-norleucine, DON, ligase, phosphoprotein; HET: CYD; 2.3A {Homo sapiens} PDB: 2vkt_A Probab=49.60 E-value=9.9 Score=17.61 Aligned_cols=33 Identities=18% Similarity=0.295 Sum_probs=27.1 Q ss_pred HHCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEC Q ss_conf 318535778999999999999862896899976 Q gi|254780820|r 131 FIGGSIGIAAGEAIVKSCERAIAEKCPLVMFTA 163 (284) Q Consensus 131 F~GGSmG~~~geki~~a~e~A~~~~~PlI~~~~ 163 (284) ..-|-+|...-|-...|+++|.++++|++.+|- T Consensus 95 lVPGGFG~RGieGkI~Ai~yARen~IPfLGICl 127 (289) T 2v4u_A 95 LVPGGFGIRGTLGKLQAISWARTKKIPFLGVXL 127 (289) T ss_dssp EECSCCSSTTHHHHHHHHHHHHHTTCCEEEETH T ss_pred EECCCCCCCCHHHHHHHHHHHHHCCCCCHHHHH T ss_conf 968978877615899999999984997023567 No 164 >2fuk_A XC6422 protein; A/B hydrolase, structural genomics, X-RAY diffraction; 1.60A {Xanthomonas campestris} SCOP: c.69.1.36 Probab=49.16 E-value=6.3 Score=19.05 Aligned_cols=84 Identities=13% Similarity=0.075 Sum_probs=44.3 Q ss_pred EEEEEEEECHHHCCCCCHHHHHHHHHHHHHHHHHCCCEEEEE-----CCCCCCCCCCHHHHHHHHHHHHHHHHHHHC-CC Q ss_conf 499999833031853577899999999999986289689997-----688877652124677778899999999862-99 Q gi|254780820|r 121 KLVAVVHEFSFIGGSIGIAAGEAIVKSCERAIAEKCPLVMFT-----ASGGARMQEGILSLMQLPRTTIAINMLKDA-GL 194 (284) Q Consensus 121 ~vvv~~~df~F~GGSmG~~~geki~~a~e~A~~~~~PlI~~~-----~SGGaRMqEG~~sL~qMakt~~a~~~l~~~-~l 194 (284) .++|.+.=...+||||..-. +..+++...+.+..++.|. .|.|.. ........ -..++++.+++. .. T Consensus 38 ~~~v~~Hph~~~Gg~~~~~~---~~~lA~~l~~~G~~vl~fd~rG~G~S~g~~--~~~~~~~~--D~~a~~~~l~~~~~~ 110 (220) T 2fuk_A 38 VTAIVCHPLSTEGGSMHNKV---VTMAARALRELGITVVRFNFRSVGTSAGSF--DHGDGEQD--DLRAVAEWVRAQRPT 110 (220) T ss_dssp EEEEEECSCTTTTCSTTCHH---HHHHHHHHHTTTCEEEEECCTTSTTCCSCC--CTTTHHHH--HHHHHHHHHHHHCTT T ss_pred CEEEEECCCCCCCCCCCCHH---HHHHHHHHHHCCCEEEEEECCCCCCCCCCC--CCCHHHHH--HHHHHHHHHHHCCCC T ss_conf 78999689998788899879---999999999789989996288868878988--87116999--999999999860788 Q ss_pred CEEEEECCCCCCEEEEEE Q ss_conf 889985676420111120 Q gi|254780820|r 195 PYIVVLTNPTTGGVTASY 212 (284) Q Consensus 195 P~I~vl~~pt~GGv~AS~ 212 (284) ..+.+ .+-++||..|.. T Consensus 111 ~~v~l-~G~S~Gg~va~~ 127 (220) T 2fuk_A 111 DTLWL-AGFSFGAYVSLR 127 (220) T ss_dssp SEEEE-EEETHHHHHHHH T ss_pred CCEEE-EEECHHHHHHHH T ss_conf 86699-986618999999 No 165 >1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1 Probab=48.47 E-value=6.9 Score=18.78 Aligned_cols=27 Identities=11% Similarity=0.191 Sum_probs=13.5 Q ss_pred EECCCCCCEEEHHHH------HHHCCCCCCCCC Q ss_conf 056676872217889------863383889989 Q gi|254780820|r 27 VKCPETGAMVYHKDL------KENQWVISSSDF 53 (284) Q Consensus 27 ~kCp~C~~~i~~~~l------~~n~~VCp~C~~ 53 (284) .+||.|+...-.-|. ....++|..|+. T Consensus 15 y~Cp~C~k~ys~Lda~~Lld~~~~~F~C~~C~~ 47 (62) T 1vd4_A 15 FKCPVCSSTFTDLEANQLFDPMTGTFRCTFCHT 47 (62) T ss_dssp EECSSSCCEEEHHHHHHHEETTTTEEBCSSSCC T ss_pred EECCCCCCEECHHHHHHHCCCCCCEEEECCCCC T ss_conf 388898888237559883596789197368899 No 166 >3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus} Probab=48.36 E-value=7.3 Score=18.58 Aligned_cols=57 Identities=21% Similarity=0.259 Sum_probs=37.7 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHH--H---------HCCCCEEEEEC Q ss_conf 853577899999999999986289689997688877652124677778899999999--8---------62998899856 Q gi|254780820|r 133 GGSIGIAAGEAIVKSCERAIAEKCPLVMFTASGGARMQEGILSLMQLPRTTIAINML--K---------DAGLPYIVVLT 201 (284) Q Consensus 133 GGSmG~~~geki~~a~e~A~~~~~PlI~~~~SGGaRMqEG~~sL~qMakt~~a~~~l--~---------~~~lP~I~vl~ 201 (284) -|-+|...-|--..|+++|.++++|+..+|-+ ||+|-+-.|-+-+ + +..-|.|.++. T Consensus 357 PGGFG~RGiEGkI~Ai~yAREn~IPfLGICLG------------mQ~AVIEfARnVlgl~dAnStEf~~~t~~pVI~lm~ 424 (535) T 3nva_A 357 LPGFGSRGAEGKIKAIKYAREHNIPFLGICFG------------FQLSIVEFARDVLGLSEANSTEINPNTKDPVITLLD 424 (535) T ss_dssp CCCCSSTTHHHHHHHHHHHHHHTCCEEEETHH------------HHHHHHHHHHTTTCCTTCEETTTCTTCSCEEEECBC T ss_pred CCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHH------------HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECC T ss_conf 79876565148999999998649980214432------------489999999985599887643357789998899622 No 167 >2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Probab=48.05 E-value=5.7 Score=19.39 Aligned_cols=40 Identities=15% Similarity=0.128 Sum_probs=26.8 Q ss_pred CEECCCCCCEEEH--HHHHHH---------CCCCCCCCCCEECCHHHHHHH Q ss_conf 1056676872217--889863---------383889989624379999998 Q gi|254780820|r 26 WVKCPETGAMVYH--KDLKEN---------QWVISSSDFHMKIPAKERLKF 65 (284) Q Consensus 26 W~kCp~C~~~i~~--~~l~~n---------~~VCp~C~~H~rl~areRi~~ 65 (284) =..||.|+...|+ ..|... -|.|+.|+.-|.-...-+.-+ T Consensus 24 ~~~C~~C~k~~~~~~~~L~~H~~~~h~~~~~~~C~~C~k~F~~~~~L~~H~ 74 (98) T 2gqj_A 24 EAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHT 74 (98) T ss_dssp CCCCTTTCCCCSSCSHHHHHHHHHHHHHHHHHSCSSSCCCCSCHHHHHHHH T ss_pred CEECCCCCEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCEECCHHHHHHHH T ss_conf 989999997305589999999998628988999919798018469999996 No 168 >2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1 Probab=47.78 E-value=2.7 Score=21.75 Aligned_cols=35 Identities=11% Similarity=0.314 Sum_probs=25.4 Q ss_pred CCCC--CCEECCCCCCEEEHHHHHHHCCCCCCCCCCEECC Q ss_conf 7746--0105667687221788986338388998962437 Q gi|254780820|r 21 IPEN--LWVKCPETGAMVYHKDLKENQWVISSSDFHMKIP 58 (284) Q Consensus 21 ip~~--lW~kCp~C~~~i~~~~l~~n~~VCp~C~~H~rl~ 58 (284) +|.+ +=..||.|+..+.- ....+-|..|..+|++- T Consensus 25 ~~~~~~Me~~CP~Cq~~L~~---~~g~~hC~~C~~~f~~~ 61 (101) T 2jne_A 25 VPRGSHMELHCPQCQHVLDQ---DNGHARCRSCGEFIEMK 61 (101) T ss_dssp ------CCCBCSSSCSBEEE---ETTEEEETTTCCEEEEE T ss_pred CCCCCCCCCCCCCCCCCCEE---CCCCEECHHHHHHHHHE T ss_conf 65888410458556881224---79979967776556761 No 169 >1oj7_A Hypothetical oxidoreductase YQHD; structural genomics; HET: NZQ; 2.0A {Escherichia coli} SCOP: e.22.1.2 Probab=47.60 E-value=14 Score=16.53 Aligned_cols=65 Identities=23% Similarity=0.306 Sum_probs=42.6 Q ss_pred HHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHH----------------HHCCCCEEEEECCC Q ss_conf 99999999999986289689997688877652124677778899999999----------------86299889985676 Q gi|254780820|r 140 AGEAIVKSCERAIAEKCPLVMFTASGGARMQEGILSLMQLPRTTIAINML----------------KDAGLPYIVVLTNP 203 (284) Q Consensus 140 ~geki~~a~e~A~~~~~PlI~~~~SGGaRMqEG~~sL~qMakt~~a~~~l----------------~~~~lP~I~vl~~p 203 (284) .-+-+.++++.+.+.++-+|+= =+|| |.|-++|..+++... .+..+|.|+|.|-+ T Consensus 91 ~~~~v~~~~~~~r~~~~D~IIa-vGGG--------S~iD~AK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~Pli~iPTta 161 (408) T 1oj7_A 91 AYETLMNAVKLVREQKVTFLLA-VGGG--------SVLDGTKFIAAAANYPENIDPWHILQTGGKEIKSAIPMGCVLTLP 161 (408) T ss_dssp BHHHHHHHHHHHHHHTCCEEEE-EESH--------HHHHHHHHHHHHTTSCTTSCTTHHHHTTTTTCCCCCCEEEEESSC T ss_pred CHHHHHHHHHHHHHCCCCEEEE-CCCC--------CHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCC T ss_conf 9999999999997559988998-0896--------343334542231148742015665412554456788823455656 Q ss_pred CCCEEEEEEC Q ss_conf 4201111201 Q gi|254780820|r 204 TTGGVTASYA 213 (284) Q Consensus 204 t~GGv~AS~a 213 (284) .||.-..+++ T Consensus 162 gTgSE~t~~a 171 (408) T 1oj7_A 162 ATGSESNAGA 171 (408) T ss_dssp SSCGGGSSEE T ss_pred CCCCCCCCCE T ss_conf 6544514643 No 170 >6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1 Probab=47.47 E-value=5.5 Score=19.50 Aligned_cols=26 Identities=15% Similarity=0.432 Sum_probs=13.6 Q ss_pred EECCCCCCEEEHHHHHH--------HCCCCCCCCC Q ss_conf 05667687221788986--------3383889989 Q gi|254780820|r 27 VKCPETGAMVYHKDLKE--------NQWVISSSDF 53 (284) Q Consensus 27 ~kCp~C~~~i~~~~l~~--------n~~VCp~C~~ 53 (284) ..|..|+ .+|.++..+ .-|+||.|+. T Consensus 5 y~C~~Cg-yiYdp~~GdGt~F~~lp~dw~CP~C~a 38 (46) T 6rxn_A 5 YVCNVCG-YEYDPAEHDNVPFDQLPDDWCCPVCGV 38 (46) T ss_dssp EEETTTC-CEECGGGGTTCCGGGSCTTCBCTTTCC T ss_pred EECCCCC-EEECCCCCCCCCHHHCCCCCCCCCCCC T ss_conf 5969999-287774379988778898876849988 No 171 >1z34_A Purine nucleoside phosphorylase; alpha-beta-alpha sandwich, transferase; HET: 2FD; 2.40A {Trichomonas vaginalis} PDB: 1z33_A* 1z35_A* 1z36_A* 1z37_A* 1z38_A* 1z39_A* 2i4t_A* 2isc_A* Probab=47.44 E-value=14 Score=16.51 Aligned_cols=50 Identities=14% Similarity=0.166 Sum_probs=29.6 Q ss_pred CCEEEEEEEEECEEEEEEEEECHHHCCCCCHHHHHHHHHHHHHHHH-HCCCEEEEE-CCCCC Q ss_conf 7169998787041499999833031853577899999999999986-289689997-68887 Q gi|254780820|r 108 DSIVSAVGNVRDFKLVAVVHEFSFIGGSIGIAAGEAIVKSCERAIA-EKCPLVMFT-ASGGA 167 (284) Q Consensus 108 davv~G~G~I~G~~vvv~~~df~F~GGSmG~~~geki~~a~e~A~~-~~~PlI~~~-~SGGa 167 (284) -...+.+|+.+|.+|+++..- ||.+... .+++..+. .+.-.|+.. .+||- T Consensus 43 r~~~~ytG~~~g~~V~v~~~G-------iG~~~aa---~~~~eLi~~~~~~~iI~~GtaG~l 94 (235) T 1z34_A 43 RGIQGYTGTYKGKPISVMGHG-------MGLPSIC---IYAEELYSTYKVKTIIRVGTCGAI 94 (235) T ss_dssp GGCCEEEEEETTEEEEEEECC-------SSHHHHH---HHHHHHHHTSCCCEEEEEEEEEEC T ss_pred CCEEEEEEEECCEEEEEEECC-------CCHHHHH---HHHHHHHHHCCCCEEEEECCCCCC T ss_conf 784899999999999999889-------7889999---999999984798489993544445 No 172 >2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2} Probab=47.37 E-value=2.6 Score=21.89 Aligned_cols=30 Identities=10% Similarity=0.196 Sum_probs=21.2 Q ss_pred EECCCCCCEEEHHHHHHHCCCCCCCCCCEECCH Q ss_conf 056676872217889863383889989624379 Q gi|254780820|r 27 VKCPETGAMVYHKDLKENQWVISSSDFHMKIPA 59 (284) Q Consensus 27 ~kCp~C~~~i~~~~l~~n~~VCp~C~~H~rl~a 59 (284) ..||.|+..+-- ..+.+-|+.|..+|++-+ T Consensus 3 ~~CP~Cq~~L~~---~~~~~hC~~C~~~~~~~a 32 (81) T 2jrp_A 3 ITCPVCHHALER---NGDTAHCETCAKDFSLQA 32 (81) T ss_dssp CCCSSSCSCCEE---CSSEEECTTTCCEEEEEE T ss_pred CCCCCCCCCCEE---CCCCEECHHHHHHHHHEE T ss_conf 878777894244---699778067664466466 No 173 >2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain associated with ring and TRAF domains protein 1, malignant 62; NMR {Homo sapiens} Probab=46.90 E-value=9.2 Score=17.85 Aligned_cols=19 Identities=21% Similarity=0.487 Sum_probs=9.7 Q ss_pred CEECC-CCCCEEEHHHHHHH Q ss_conf 10566-76872217889863 Q gi|254780820|r 26 WVKCP-ETGAMVYHKDLKEN 44 (284) Q Consensus 26 W~kCp-~C~~~i~~~~l~~n 44 (284) .+.|| .|+..+.++++++- T Consensus 16 ~v~C~~~C~~~i~r~~l~~H 35 (76) T 2yuc_A 16 VIPCPNRCPMKLSRRDLPAH 35 (76) T ss_dssp CCBCTTCCSCBCCSSSSTTT T ss_pred ECCCCCCCCCHHHHHHHHHH T ss_conf 34776120449689899866 No 174 >2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthesis, NESG, structural genomics, PSI-2; 1.90A {Chromobacterium violaceum atcc 12472} SCOP: b.171.1.1 Probab=46.84 E-value=2.7 Score=21.82 Aligned_cols=30 Identities=10% Similarity=0.311 Sum_probs=21.7 Q ss_pred EECCCCCCEEEHHHHHHHCCCCCCCCCCEEC Q ss_conf 0566768722178898633838899896243 Q gi|254780820|r 27 VKCPETGAMVYHKDLKENQWVISSSDFHMKI 57 (284) Q Consensus 27 ~kCp~C~~~i~~~~l~~n~~VCp~C~~H~rl 57 (284) .-||.|+..+...+ +++.-||+.|+.-|++ T Consensus 9 L~CP~ck~~L~~~~-~~~~Lvc~~~~laYPI 38 (68) T 2hf1_A 9 LVCPLCKGPLVFDK-SKDELICKGDRLAFPI 38 (68) T ss_dssp CBCTTTCCBCEEET-TTTEEEETTTTEEEEE T ss_pred HCCCCCCCEEEEEC-CCCEEECCCCCCCCCC T ss_conf 36879898617928-8998964887955545 No 175 >1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A* Probab=46.19 E-value=9 Score=17.89 Aligned_cols=34 Identities=12% Similarity=0.335 Sum_probs=24.3 Q ss_pred EECCCCCCEEE--HH-HHHHHCCCCCCCCCCEECCHH Q ss_conf 05667687221--78-898633838899896243799 Q gi|254780820|r 27 VKCPETGAMVY--HK-DLKENQWVISSSDFHMKIPAK 60 (284) Q Consensus 27 ~kCp~C~~~i~--~~-~l~~n~~VCp~C~~H~rl~ar 60 (284) .+|++|+..+- -+ +...+.|+|+-|++.-.++.. T Consensus 56 ~RC~~C~ayiNpf~~~~~~~~~W~C~~C~~~N~~p~~ 92 (768) T 1m2o_A 56 CSGPHCKSILNPYCVIDPRNSSWSCPICNSRNHLPPQ 92 (768) T ss_dssp CCSTTTCCBCCTTSCEETTTTEECCTTTCCCCBCCGG T ss_pred CCCCCCCCEECCCEEEECCCCEEECCCCCCCCCCCHH T ss_conf 4589871585784499689998984479982899734 No 176 >3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} Probab=46.07 E-value=11 Score=17.20 Aligned_cols=41 Identities=24% Similarity=0.430 Sum_probs=28.3 Q ss_pred HHHHCCCEEEEECCCC-CCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECC Q ss_conf 9862896899976888-776521246777788999999998629988998567 Q gi|254780820|r 151 AIAEKCPLVMFTASGG-ARMQEGILSLMQLPRTTIAINMLKDAGLPYIVVLTN 202 (284) Q Consensus 151 A~~~~~PlI~~~~SGG-aRMqEG~~sL~qMakt~~a~~~l~~~~lP~I~vl~~ 202 (284) |....+|+|.+.-++| .....+.+|+.||| .|+|.-++..+ T Consensus 79 a~~t~~PVIgVP~~~~~l~G~d~llS~vqMP-----------~GvPVatvavg 120 (166) T 3oow_A 79 AAKTTLPVLGVPVKSSTLNGQDSLLSIVQMP-----------AGIPVATFAIG 120 (166) T ss_dssp HHTCSSCEEEEECCCTTTTTHHHHHHHHTCC-----------TTSCCEECCST T ss_pred HHCCCCCEEEECCCCCCCCCCCHHHHHHHCC-----------CCCCCEEEECC T ss_conf 6636888686304545677721289997098-----------78984478627 No 177 >2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4KFT4, structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens pf-5} SCOP: b.171.1.1 Probab=45.71 E-value=2.5 Score=21.98 Aligned_cols=30 Identities=10% Similarity=0.252 Sum_probs=21.7 Q ss_pred EECCCCCCEEEHHHHHHHCCCCCCCCCCEEC Q ss_conf 0566768722178898633838899896243 Q gi|254780820|r 27 VKCPETGAMVYHKDLKENQWVISSSDFHMKI 57 (284) Q Consensus 27 ~kCp~C~~~i~~~~l~~n~~VCp~C~~H~rl 57 (284) .-||.|++.+...+ +++.-||+.|+.-|++ T Consensus 9 L~CP~ck~~L~~~~-~~~~Lvc~~~~~~YPI 38 (69) T 2pk7_A 9 LACPICKGPLKLSA-DKTELISKGAGLAYPI 38 (69) T ss_dssp CCCTTTCCCCEECT-TSSEEEETTTTEEEEE T ss_pred HCCCCCCCEEEEEC-CCCEEECCCCCCEEEC T ss_conf 16879999706968-8997976987835233 No 178 >3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* Probab=45.55 E-value=2.7 Score=21.72 Aligned_cols=35 Identities=14% Similarity=0.263 Sum_probs=22.9 Q ss_pred CCEECCCCCCE--EEHHHHHHHCCCCCCCCCCEECCH Q ss_conf 01056676872--217889863383889989624379 Q gi|254780820|r 25 LWVKCPETGAM--VYHKDLKENQWVISSSDFHMKIPA 59 (284) Q Consensus 25 lW~kCp~C~~~--i~~~~l~~n~~VCp~C~~H~rl~a 59 (284) -++.||.|+.. .+.++=...+-.|..||..-.+.+ T Consensus 102 ~yVlC~~C~spdT~l~k~~r~~~l~C~aCGa~~~V~~ 138 (139) T 3cw2_K 102 AYVECSTCKSLDTILKKEKKSWYIVCLACGAQTPVKP 138 (139) T ss_dssp CCSSCCSSSSSCCCSCSSCSTTTSSCCC--------- T ss_pred HEEECCCCCCCCCEEEEECCEEEEECCCCCCCCCCCC T ss_conf 7789999999730899958838998057999986888 No 179 >1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1 Probab=45.20 E-value=2.1 Score=22.54 Aligned_cols=31 Identities=10% Similarity=0.024 Sum_probs=21.0 Q ss_pred EECCCCCCEE---E------HHHHHHHCCCCCCCCCCEEC Q ss_conf 0566768722---1------78898633838899896243 Q gi|254780820|r 27 VKCPETGAMV---Y------HKDLKENQWVISSSDFHMKI 57 (284) Q Consensus 27 ~kCp~C~~~i---~------~~~l~~n~~VCp~C~~H~rl 57 (284) .+||+|+..- + .+|=.-.++.|.+|||..|. T Consensus 10 ~kC~kC~~~~~~~~~~QtRSADEp~T~F~~C~~Cg~~Wr~ 49 (50) T 1tfi_A 10 FTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWKF 49 (50) T ss_dssp SCCSSSCSSCEEEEEECSSSSSSCCEEEEEESSSCCEEEC T ss_pred EECCCCCCCCCEEEEEECCCCCCCCEEEEEHHHCCCCEEE T ss_conf 7998978995589988730798885499990106871270 No 180 >2ha9_A UPF0210 protein SP0239; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.70A {Streptococcus pneumoniae} SCOP: c.7.1.5 Probab=44.95 E-value=15 Score=16.25 Aligned_cols=95 Identities=21% Similarity=0.391 Sum_probs=46.5 Q ss_pred HHHHHHHHHHHHCCCEEEE----ECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECC-----CCCCEEEEEEC Q ss_conf 9999999998628968999----76888776521246777788999999998629988998567-----64201111201 Q gi|254780820|r 143 AIVKSCERAIAEKCPLVMF----TASGGARMQEGILSLMQLPRTTIAINMLKDAGLPYIVVLTN-----PTTGGVTASYA 213 (284) Q Consensus 143 ki~~a~e~A~~~~~PlI~~----~~SGGaRMqEG~~sL~qMakt~~a~~~l~~~~lP~I~vl~~-----pt~GGv~AS~a 213 (284) .+...+-.|+...--+-.. +.-.|. .+.+.-.|+++.-.+.++..-+---++|+.| |-+-| +|- T Consensus 129 ~lI~siP~aL~~T~~vcssvNv~st~~GI----NmdAv~~~~~iIk~~A~~t~~g~aklvVfaN~~~d~PFmpg---a~H 201 (446) T 2ha9_A 129 ILINSIPRALAETDKVCSSVNIGSTKSGI----NMTAVADMGRIIKETANLSDMGVAKLVVFANAVEDNPFMAG---AFH 201 (446) T ss_dssp HHHHHHHHHHHSCSSEEEEEECEETTTEE----EHHHHHHHHHHHHHHHTTCSSGGGGEEEEESCCTTCCSCC----CCC T ss_pred HHHHHHHHHHHHHCCEEEEEEECCCCCCC----CHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCC---CCC T ss_conf 89999999986307156777642665676----78999999999999973496662458997489989997887---667 Q ss_pred CCCCEEEEECCC--EEECCCHHHHHHHHCCCCCCCCHH Q ss_conf 468525553142--110232788787636778872021 Q gi|254780820|r 214 MLGDIHLAEPGA--EIGFAGRRVIEQTVREKLPDGFQR 249 (284) Q Consensus 214 ~lgDiiiaep~a--~igFaG~rVi~~t~~~~lp~~fqt 249 (284) . ..||.+ ++|++||.|+++.+.+--.++|++ T Consensus 202 g-----~ge~d~~inVGvsgPgvV~~al~~~~~~~~~~ 234 (446) T 2ha9_A 202 G-----VGEADVIINVGVSGPGVVKRALEKVRGQSFDV 234 (446) T ss_dssp C-----TTSCSEEEEEEECCHHHHHHHHHTTTTCCHHH T ss_pred C-----CCCCCEEEEEECCCCHHHHHHHHHHHCCCHHH T ss_conf 7-----88876289995158569999999721698899 No 181 >1q68_B Proto-oncogene tyrosine-protein kinase LCK; peptide-peptide complex, helix-helix interaction, zinc coordination, beta hairpin; NMR {Homo sapiens} SCOP: j.108.1.1 PDB: 1q69_B Probab=44.38 E-value=7.1 Score=18.69 Aligned_cols=17 Identities=24% Similarity=0.218 Sum_probs=13.4 Q ss_pred HHHHHHHCCCCCCCCCC Q ss_conf 78898633838899896 Q gi|254780820|r 38 HKDLKENQWVISSSDFH 54 (284) Q Consensus 38 ~~~l~~n~~VCp~C~~H 54 (284) ..|+-+|..||.+|.|. T Consensus 4 eddw~enidvcenchyp 20 (29) T 1q68_B 4 EDDWLENIDVCENCHYP 20 (29) T ss_dssp SSHHHHTCCCCSSSCSC T ss_pred HHHHHHHHHHHHCCCCC T ss_conf 26666643666327875 No 182 >1q14_A HST2 protein; histone deacetylase, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5 Probab=43.49 E-value=16 Score=16.09 Aligned_cols=80 Identities=14% Similarity=0.067 Sum_probs=40.8 Q ss_pred ECHHHCCCCCHHHHHHHHHHHHHHH--------HHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEE Q ss_conf 3303185357789999999999998--------62896899976888776521246777788999999998629988998 Q gi|254780820|r 128 EFSFIGGSIGIAAGEAIVKSCERAI--------AEKCPLVMFTASGGARMQEGILSLMQLPRTTIAINMLKDAGLPYIVV 199 (284) Q Consensus 128 df~F~GGSmG~~~geki~~a~e~A~--------~~~~PlI~~~~SGGaRMqEG~~sL~qMakt~~a~~~l~~~~lP~I~v 199 (284) |--|+|=++-...-+....+.|.+. ..++.++++..|...= ..+.+|..++ ..+.|.|.| T Consensus 184 ~IV~FGE~lP~~~~~~~~~~~e~~~~~~~~~~~~~~~DlliviGTSL~V--~Pa~~l~~~~----------~~~~~~viI 251 (361) T 1q14_A 184 AIVFFGEDLPDSFSETWLNDSEWLREKITTSGKHPQQPLVIVVGTSLAV--YPFASLPEEI----------PRKVKRVLC 251 (361) T ss_dssp EECCBTSCCCHHHHHHHHHHHHHHHHC--------CCCEEEEESCCCCS--TTGGGHHHHS----------CTTSEEEEE T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEE--CCHHHHHHHH----------HCCCCEEEE T ss_conf 7877689787478999999888889999876530468999997968754--1876779999----------749988999 Q ss_pred ECCCCCCEEEEEECCCCCEEEE Q ss_conf 5676420111120146852555 Q gi|254780820|r 200 LTNPTTGGVTASYAMLGDIHLA 221 (284) Q Consensus 200 l~~pt~GGv~AS~a~lgDiiia 221 (284) -..||.... .+-...|+.|- T Consensus 252 N~e~~~~~~--~~~~~~Dl~i~ 271 (361) T 1q14_A 252 NLETVGDFK--ANKRPTDLIVH 271 (361) T ss_dssp SSSCCHHHH--HTCCTTCEEEC T ss_pred ECCCCCCCC--CCCCCCCEEEE T ss_conf 799788876--67887548995 No 183 >2exu_A Transcription initiation protein SPT4/SPT5; helixs surrounding beta sheet; 2.23A {Saccharomyces cerevisiae} Probab=42.82 E-value=9.7 Score=17.67 Aligned_cols=26 Identities=8% Similarity=0.086 Sum_probs=22.4 Q ss_pred EECCCCCCEEEHHHHHHHCCCCCCCCCC Q ss_conf 0566768722178898633838899896 Q gi|254780820|r 27 VKCPETGAMVYHKDLKENQWVISSSDFH 54 (284) Q Consensus 27 ~kCp~C~~~i~~~~l~~n~~VCp~C~~H 54 (284) .-|-.|+-+.-...+.++ -||+|+.- T Consensus 5 rAC~~C~lI~t~~qf~~~--gCpnC~~~ 30 (200) T 2exu_A 5 RACMLCGIVQTTNEFNRD--GCPNCQGI 30 (200) T ss_dssp EEETTTCBEEEHHHHHHH--CCTTTHHH T ss_pred CHHHHCCCEECHHHHCCC--CCCCCCCH T ss_conf 045519955014241357--99997002 No 184 >1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A* Probab=42.71 E-value=16 Score=16.01 Aligned_cols=92 Identities=22% Similarity=0.277 Sum_probs=52.7 Q ss_pred CHHHHHHHHHHHCCCCCCEEEEEEEEECEEEEEEEEECHHHCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCC Q ss_conf 03566776664216677169998787041499999833031853577899999999999986289689997688877652 Q gi|254780820|r 92 KYIDRLKENRSKTGLIDSIVSAVGNVRDFKLVAVVHEFSFIGGSIGIAAGEAIVKSCERAIAEKCPLVMFTASGGARMQE 171 (284) Q Consensus 92 ~Y~drl~~a~~kTg~~davv~G~G~I~G~~vvv~~~df~F~GGSmG~~~geki~~a~e~A~~~~~PlI~~~~SGGaRMqE 171 (284) ++-+++.+.-++.|..-.+ +..+. +...-+.+.++++.+.+.+..+| +.-+|| T Consensus 56 g~~~~v~~~L~~~~i~~~v---f~~v~------------------~~p~~~~v~~~~~~~~~~~~D~I-vavGGG----- 108 (371) T 1o2d_A 56 GSLDDLKKLLDETEISYEI---FDEVE------------------ENPSFDNVMKAVERYRNDSFDFV-VGLGGG----- 108 (371) T ss_dssp SHHHHHHHHHHHTTCEEEE---EEEEC------------------SSCBHHHHHHHHHHHTTSCCSEE-EEEESH----- T ss_pred HHHHHHHHHHHHCCCEEEE---ECCCC------------------CCCCHHHHHHHHHHHHHCCCCEE-EEECCC----- T ss_conf 5999999999876985999---68866------------------89799999999999985499889-982897----- Q ss_pred CHHHHHHHHHHHHHHHH-------------HHHCCCCEEEEECCCCCCEEEEEEC Q ss_conf 12467777889999999-------------9862998899856764201111201 Q gi|254780820|r 172 GILSLMQLPRTTIAINM-------------LKDAGLPYIVVLTNPTTGGVTASYA 213 (284) Q Consensus 172 G~~sL~qMakt~~a~~~-------------l~~~~lP~I~vl~~pt~GGv~AS~a 213 (284) |.|-.+|..+.+.. .....+|+|+|-|-+.+|.-+..++ T Consensus 109 ---s~iD~aK~va~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTtagtgse~t~~a 160 (371) T 1o2d_A 109 ---SPMDFAKAVAVLLKEKDLSVEDLYDREKVKHWLPVVEIPTTAGTGSEVTPYS 160 (371) T ss_dssp ---HHHHHHHHHHHHTTSTTCCSGGGGCGGGCCCCCCEEEEECSSCCCGGGCCEE T ss_pred ---CCCHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCEEEECCCCCCCCCCCCCC T ss_conf ---6120899999998579971443057655346788688237445664457765 No 185 >1o4v_A Phosphoribosylaminoimidazole mutase PURE; TM0446, structural genomics, JCSG, PSI, protein structure initiative; 1.77A {Thermotoga maritima} SCOP: c.23.8.1 Probab=42.55 E-value=14 Score=16.60 Aligned_cols=41 Identities=22% Similarity=0.415 Sum_probs=26.9 Q ss_pred HHHHCCCEEEEECCCCC-CCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECC Q ss_conf 98628968999768887-76521246777788999999998629988998567 Q gi|254780820|r 151 AIAEKCPLVMFTASGGA-RMQEGILSLMQLPRTTIAINMLKDAGLPYIVVLTN 202 (284) Q Consensus 151 A~~~~~PlI~~~~SGGa-RMqEG~~sL~qMakt~~a~~~l~~~~lP~I~vl~~ 202 (284) |....+|+|.+..++|. ....+.+|.+||+ +|+|.-+|.-| T Consensus 87 A~~t~~PVIgVP~~~~~~~G~daLlS~lqMP-----------~gvpVatV~Id 128 (183) T 1o4v_A 87 ASITHLPVIGVPVKTSTLNGLDSLFSIVQMP-----------GGVPVATVAIN 128 (183) T ss_dssp HHHCSSCEEEEEECCTTTTTHHHHHHHHTCC-----------TTCCCEECCTT T ss_pred EEECCCEEEEECCCCCCCCCHHHHHHHHHCC-----------CCCCEEEEECC T ss_conf 8732611786115777887677788760188-----------88876777547 No 186 >1s1i_9 L37A, YL35, 60S ribosomal protein L43; 80S ribosome, 60S ribosomal subunit, EEF2, tRNA translocation, sordarin, cryo-EM; 11.70A {Saccharomyces cerevisiae} SCOP: i.1.1.1 Probab=42.44 E-value=6.2 Score=19.09 Aligned_cols=40 Identities=15% Similarity=0.162 Sum_probs=27.1 Q ss_pred CCCCCCCCEECCCCCCEEEHHHHHHHCCCCCCCCCCEECCH Q ss_conf 24774601056676872217889863383889989624379 Q gi|254780820|r 19 RAIPENLWVKCPETGAMVYHKDLKENQWVISSSDFHMKIPA 59 (284) Q Consensus 19 k~ip~~lW~kCp~C~~~i~~~~l~~n~~VCp~C~~H~rl~a 59 (284) -++...-=.+||-|+..--++ ..--.|.|.+|++-|-=.| T Consensus 28 ie~~q~aky~Cp~Cgk~~vkR-~a~GIW~C~kC~~~~AGGA 67 (91) T 1s1i_9 28 LEIQQHARYDCSFCGKKTVKR-GAAGIWTCSCCKKTVAGGA 67 (91) T ss_dssp SCSSSSSCCCCTTTCSSCCCE-ETTTEECCSSSCCCEECCS T ss_pred HHHHHCCCCCCCCCCCCEEEE-EEEEEEECCCCCCEEECCC T ss_conf 999956882398999973489-9888868799998886774 No 187 >1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA- directed RNA polymerase, primosome, late protein; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2 Probab=42.27 E-value=5.3 Score=19.62 Aligned_cols=28 Identities=7% Similarity=0.154 Sum_probs=18.5 Q ss_pred ECCCCCCE----EEHHHHHHHCCCCCCCCCCEECCH Q ss_conf 56676872----217889863383889989624379 Q gi|254780820|r 28 KCPETGAM----VYHKDLKENQWVISSSDFHMKIPA 59 (284) Q Consensus 28 kCp~C~~~----i~~~~l~~n~~VCp~C~~H~rl~a 59 (284) -||.||+- +|. +..+=|-+||++..... T Consensus 16 pCP~Cg~~d~~~~~~----dg~~~C~~Cg~~~~~~~ 47 (255) T 1nui_A 16 PCDNCGSSDGNSLFS----DGHTFCYVCEKWTAGNE 47 (255) T ss_dssp CCSSSCCSSCEEEET----TSCEEETTTCCEEC--- T ss_pred CCCCCCCCCCCEEEE----CCCEEECCCCCCCCCCC T ss_conf 999898999987952----99889767998447876 No 188 >1tib_A Lipase; hydrolase(carboxylic esterase); 1.84A {Thermomyces lanuginosus} SCOP: c.69.1.17 PDB: 1dt3_A 1dt5_A 1du4_A 1ein_A* 1dte_A 1gt6_A* Probab=42.01 E-value=2.6 Score=21.86 Aligned_cols=84 Identities=19% Similarity=0.121 Sum_probs=42.8 Q ss_pred HHHHCCCEEEEE-CCCCCCCCCCHHHHHHHH--HHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCCEEE-EECCCE Q ss_conf 986289689997-688877652124677778--8999999998629988998567642011112014685255-531421 Q gi|254780820|r 151 AIAEKCPLVMFT-ASGGARMQEGILSLMQLP--RTTIAINMLKDAGLPYIVVLTNPTTGGVTASYAMLGDIHL-AEPGAE 226 (284) Q Consensus 151 A~~~~~PlI~~~-~SGGaRMqEG~~sL~qMa--kt~~a~~~l~~~~lP~I~vl~~pt~GGv~AS~a~lgDiii-aep~a~ 226 (284) ..+-....+-+. ...|.++|.|.....+.. .+...+.++.+..--+=.++|+-..||..|+.+.+ ++.. ..+-.. T Consensus 90 ~~Dl~~~~~~~~~~~~~~~VH~GF~~~~~~~~~~i~~~v~~~~~~~~~~~l~vtGHSLGgalA~l~a~-~l~~~~~~v~v 168 (269) T 1tib_A 90 IGNLNFDLKEINDICSGCRGHDGFTSSWRSVADTLRQKVEDAVREHPDYRVVFTGHSLGGALATVAGA-DLRGNGYDIDV 168 (269) T ss_dssp HTCCCCCEEECTTTSTTCEEEHHHHHHHHHHHHHHHHHHHHHHHHCTTSEEEEEEETHHHHHHHHHHH-HHTTSSSCEEE T ss_pred HHHCCCCCEECCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHH-HHHHCCCCCEE T ss_conf 98568563644214899677075999999999999999999998789965898316778999999999-98735887308 Q ss_pred EECCCHHHH Q ss_conf 102327887 Q gi|254780820|r 227 IGFAGRRVI 235 (284) Q Consensus 227 igFaG~rVi 235 (284) +.|+.|||- T Consensus 169 ~tFg~PrvG 177 (269) T 1tib_A 169 FSYGAPRVG 177 (269) T ss_dssp EEESCCCCB T ss_pred EEECCCCCC T ss_conf 984898657 No 189 >1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1 Probab=41.52 E-value=5 Score=19.81 Aligned_cols=31 Identities=23% Similarity=0.348 Sum_probs=12.7 Q ss_pred CEECCCCCCEE----EHHHHHHHCCCCCCCCCCEE Q ss_conf 10566768722----17889863383889989624 Q gi|254780820|r 26 WVKCPETGAMV----YHKDLKENQWVISSSDFHMK 56 (284) Q Consensus 26 W~kCp~C~~~i----~~~~l~~n~~VCp~C~~H~r 56 (284) .+-|+.|+-.+ |.+.+++....||.|...|+ T Consensus 35 f~~C~~Cgh~~C~~C~~~~~~~~~~~CP~CR~~yk 69 (93) T 1weo_A 35 FVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93) T ss_dssp CCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC T ss_pred EEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHH T ss_conf 65666467667399999999857996878785131 No 190 >3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* Probab=41.46 E-value=13 Score=16.70 Aligned_cols=32 Identities=13% Similarity=0.073 Sum_probs=22.0 Q ss_pred CCCCCEECCCCCCEEEHHHH--------------HHHCCCCCCCCC Q ss_conf 74601056676872217889--------------863383889989 Q gi|254780820|r 22 PENLWVKCPETGAMVYHKDL--------------KENQWVISSSDF 53 (284) Q Consensus 22 p~~lW~kCp~C~~~i~~~~l--------------~~n~~VCp~C~~ 53 (284) .++-|+.|..|+.-.+..=. ..-.|+||.|-- T Consensus 17 ~~~~~i~Cd~C~~w~H~~C~~~~~~~~~~~~~~~~~~~y~C~~C~~ 62 (183) T 3lqh_A 17 YESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTE 62 (183) T ss_dssp TTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCC T ss_pred CCCCEEECCCCCCCCCHHHCCCCHHHHHHHHCCCCCCEEECCCCCC T ss_conf 9987776599984227121699777887652379998688988889 No 191 >1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A Probab=41.14 E-value=5 Score=19.78 Aligned_cols=51 Identities=20% Similarity=0.444 Sum_probs=28.3 Q ss_pred CCCCCCEECCCCCCEEEHHH----------------HHHHCCCCCCCCCCEECCHHHHHHHHCCCCCCCCCCCCCCCCHH Q ss_conf 77460105667687221788----------------98633838899896243799999984556542013345687020 Q gi|254780820|r 21 IPENLWVKCPETGAMVYHKD----------------LKENQWVISSSDFHMKIPAKERLKFLFDNAKYCLLDQPQVCQDP 84 (284) Q Consensus 21 ip~~lW~kCp~C~~~i~~~~----------------l~~n~~VCp~C~~H~rl~areRi~~l~D~gsf~Ei~~~~~~~DP 84 (284) +.++. ..|..|+- +|.++ |- ..|+||.|+. .+..|+.+... + T Consensus 3 ~~~~k-y~C~~Cgy-iYDp~~Gd~~~gIppGT~F~dLP-~dw~CP~C~a--------------~K~~F~~i~~~-----~ 60 (70) T 1dx8_A 3 IDEGK-YECEACGY-IYEPEKGDKFAGIPPGTPFVDLS-DSFMCPACRS--------------PKNQFKSIKKV-----I 60 (70) T ss_dssp CCSSC-EEETTTCC-EECTTTCCTTTTCCSSCCGGGSC-TTCBCTTTCC--------------BGGGEEECCCB-----C T ss_pred CCCCC-EEECCCCE-EECCCCCCCCCCCCCCCCHHHCC-CCCCCCCCCC--------------CHHHHEECCCC-----C T ss_conf 67884-78199990-87866678466879889967888-9877919998--------------58880274343-----5 Q ss_pred CCCCCCCCH Q ss_conf 186764203 Q gi|254780820|r 85 LKFRDNKKY 93 (284) Q Consensus 85 L~F~d~k~Y 93 (284) -.|...-.| T Consensus 61 agf~eN~~y 69 (70) T 1dx8_A 61 AGFAENQKY 69 (70) T ss_dssp CCSCCCSCC T ss_pred CCCHHHCCC T ss_conf 781243346 No 192 >2ywx_A Phosphoribosylaminoimidazole carboxylase catalytic subunit; rossmann fold, structural genomics, NPPSFA; 2.31A {Methanocaldococcus jannaschii} Probab=40.98 E-value=8.5 Score=18.10 Aligned_cols=42 Identities=21% Similarity=0.334 Sum_probs=29.1 Q ss_pred HHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCC Q ss_conf 98628968999768887765212467777889999999986299889985676 Q gi|254780820|r 151 AIAEKCPLVMFTASGGARMQEGILSLMQLPRTTIAINMLKDAGLPYIVVLTNP 203 (284) Q Consensus 151 A~~~~~PlI~~~~SGGaRMqEG~~sL~qMakt~~a~~~l~~~~lP~I~vl~~p 203 (284) |-...+|+|.+.-+++--.....+|-.||| .|+|.-+|..|. T Consensus 70 A~~t~~PVIgVP~~~~~~G~daLlS~vqmP-----------~GvpVatv~I~~ 111 (157) T 2ywx_A 70 ASLTTKPVIAVPVDAKLDGLDALLSSVQMP-----------PGIPVATVGIDR 111 (157) T ss_dssp HTTCSSCEEEEEECSSGGGHHHHHHHHSCC-----------TTSCCEECCTTC T ss_pred HHCCCCCCEECCCCCCCCHHHHHHHHHCCC-----------CCCCEEEEECCC T ss_conf 870799757556678866799999986167-----------899657764575 No 193 >3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B Probab=40.98 E-value=3.3 Score=21.09 Aligned_cols=34 Identities=12% Similarity=0.270 Sum_probs=24.5 Q ss_pred CEECCCCCCEEE--HHHHHHHCCCCCCCCCCEECCH Q ss_conf 105667687221--7889863383889989624379 Q gi|254780820|r 26 WVKCPETGAMVY--HKDLKENQWVISSSDFHMKIPA 59 (284) Q Consensus 26 W~kCp~C~~~i~--~~~l~~n~~VCp~C~~H~rl~a 59 (284) =..|.+|+..+- -+-.+.+.|+|+-|++...++. T Consensus 85 ~~RC~~C~AYiNp~~~~~~~~~w~C~~C~~~N~lP~ 120 (751) T 3eh1_A 85 IVRCRSCRTYINPFVSFIDQRRWKCNLCYRVNDVPE 120 (751) T ss_dssp CCBCTTTCCBCCTTCEESSSSEEECTTTCCEEECCG T ss_pred CCCCCCCCCEECCCEEECCCCEEECCCCCCCCCCCH T ss_conf 982798738888737884799898247998689986 No 194 >2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Probab=40.74 E-value=6.6 Score=18.89 Aligned_cols=13 Identities=15% Similarity=0.041 Sum_probs=8.4 Q ss_pred CCCCCCCCCEECC Q ss_conf 8388998962437 Q gi|254780820|r 46 WVISSSDFHMKIP 58 (284) Q Consensus 46 ~VCp~C~~H~rl~ 58 (284) .-||.|++.|+-+ T Consensus 10 ~KCPyCd~~F~kn 22 (37) T 2elp_A 10 MKCPYCDFYFMKN 22 (37) T ss_dssp EECSSSSCEECSS T ss_pred CCCCCHHHHHHHC T ss_conf 1487016888505 No 195 >1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide mutase); acidophIle, protein stability, lyase; HET: CIT; 1.55A {Acetobacter aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A 2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A Probab=40.50 E-value=5.1 Score=19.75 Aligned_cols=41 Identities=20% Similarity=0.364 Sum_probs=26.8 Q ss_pred HHHHCCCEEEEECCCC-CCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECC Q ss_conf 9862896899976888-776521246777788999999998629988998567 Q gi|254780820|r 151 AIAEKCPLVMFTASGG-ARMQEGILSLMQLPRTTIAINMLKDAGLPYIVVLTN 202 (284) Q Consensus 151 A~~~~~PlI~~~~SGG-aRMqEG~~sL~qMakt~~a~~~l~~~~lP~I~vl~~ 202 (284) |....+|+|.+.-+.| --...+.+|..||+ .|+|.-++..+ T Consensus 95 a~~t~~PVIgvP~~~~~l~G~DsLlS~vqMP-----------~GvPvatvavg 136 (182) T 1u11_A 95 AAWTRLPVLGVPVESRALKGMDSLLSIVQMP-----------GGVPVGTLAIG 136 (182) T ss_dssp HHHCSSCEEEEEECCTTTTTHHHHHHHHCCC-----------TTSCCEECCSS T ss_pred CCCCCCCEEEEECCCCCCCCCCCHHHHHHCC-----------CCCCCEEEEEC T ss_conf 0146885899845667787633088997576-----------48983588725 No 196 >1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A* Probab=40.42 E-value=18 Score=15.77 Aligned_cols=112 Identities=13% Similarity=0.135 Sum_probs=62.8 Q ss_pred HCCCCCCCCCCCCCCC---CHHCCCCCC----CCHHHHHHHHHHHCCCCCCEEEEEEEEECEEEEEEEEECHHHCCCCCH Q ss_conf 4556542013345687---020186764----203566776664216677169998787041499999833031853577 Q gi|254780820|r 66 LFDNAKYCLLDQPQVC---QDPLKFRDN----KKYIDRLKENRSKTGLIDSIVSAVGNVRDFKLVAVVHEFSFIGGSIGI 138 (284) Q Consensus 66 l~D~gsf~Ei~~~~~~---~DPL~F~d~----k~Y~drl~~a~~kTg~~davv~G~G~I~G~~vvv~~~df~F~GGSmG~ 138 (284) +|.+|.+.++...+.. ..+|-..|. .++-+++.+.-+..|.. +.+ ..|--+. T Consensus 13 ~fG~g~~~~l~~~~~~~G~k~vlvv~~~~~~~~g~~~~i~~~L~~~gi~--------------~~v-------f~~v~~~ 71 (386) T 1rrm_A 13 WFGRGAVGALTDEVKRRGYQKALIVTDKTLVQCGVVAKVTDKMDAAGLA--------------WAI-------YDGVVPN 71 (386) T ss_dssp EESTTGGGGHHHHHHHHTCCEEEEECBHHHHHTTHHHHHHHHHHHTTCE--------------EEE-------ECBCCSS T ss_pred EECCCHHHHHHHHHHHCCCCEEEEEECCCHHHCCHHHHHHHHHHHCCCE--------------EEE-------ECCCCCC T ss_conf 6987699999999997699879999897756582799999999875983--------------999-------8784799 Q ss_pred HHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHH---------------HCCCCEEEEECCC Q ss_conf 8999999999999862896899976888776521246777788999999998---------------6299889985676 Q gi|254780820|r 139 AAGEAIVKSCERAIAEKCPLVMFTASGGARMQEGILSLMQLPRTTIAINMLK---------------DAGLPYIVVLTNP 203 (284) Q Consensus 139 ~~geki~~a~e~A~~~~~PlI~~~~SGGaRMqEG~~sL~qMakt~~a~~~l~---------------~~~lP~I~vl~~p 203 (284) ..-+.+.++++.+.+.+..+|+= -+|| |-|-++|..+.+.... ..++|.|+|-|-+ T Consensus 72 pt~~~v~~~~~~~~~~~~D~Iia-vGGG--------s~iD~aK~va~~~~~~~~~~~~~~~~~~~~~~~~lP~i~VPTta 142 (386) T 1rrm_A 72 PTITVVKEGLGVFQNSGADYLIA-IGGG--------SPQDTCKAIGIISNNPEFADVRSLEGLSPTNKPSVPILAIPTTA 142 (386) T ss_dssp CBHHHHHHHHHHHHHHTCSEEEE-EESH--------HHHHHHHHHHHHHHCGGGTTSGGGSEECCCCSCCSCEEEEECSS T ss_pred CCHHHHHHHHHHHHCCCCCEEEE-CCCC--------CCCHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCEEEECCCC T ss_conf 79999999865550358887997-6886--------41048999999853864320344303565557877579604766 Q ss_pred CCCE Q ss_conf 4201 Q gi|254780820|r 204 TTGG 207 (284) Q Consensus 204 t~GG 207 (284) .||. T Consensus 143 gtgs 146 (386) T 1rrm_A 143 GTAA 146 (386) T ss_dssp SCCT T ss_pred CCCC T ss_conf 5533 No 197 >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A Probab=39.97 E-value=18 Score=15.72 Aligned_cols=69 Identities=17% Similarity=0.344 Sum_probs=42.5 Q ss_pred CCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEE-EECCCCCCE Q ss_conf 577899999999999986289689997688877652124677778899999999862998899-856764201 Q gi|254780820|r 136 IGIAAGEAIVKSCERAIAEKCPLVMFTASGGARMQEGILSLMQLPRTTIAINMLKDAGLPYIV-VLTNPTTGG 207 (284) Q Consensus 136 mG~~~geki~~a~e~A~~~~~PlI~~~~SGGaRMqEG~~sL~qMakt~~a~~~l~~~~lP~I~-vl~~pt~GG 207 (284) .+.-...-...+++.|..++..+|++-..| |+|-...-+.+|.+...++..+... -|.-+ +..+.++|. T Consensus 172 ~~~dp~~v~~~~~~~A~~~~~DvvlIDTaG--R~~~d~~lm~el~ki~~~~~~~~~~-~p~e~~LVlda~~gq 241 (320) T 1zu4_A 172 LNADPASVVFDAIKKAKEQNYDLLLIDTAG--RLQNKTNLMAELEKMNKIIQQVEKS-APHEVLLVIDATTGQ 241 (320) T ss_dssp TTCCHHHHHHHHHHHHHHTTCSEEEEECCC--CGGGHHHHHHHHHHHHHHHHTTCTT-CCSEEEEEEEGGGTH T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEECCCC--CCCCCHHHHHHHHHHHHHHHHCCCC-CCCEEEEEEECCCCC T ss_conf 788879999999999997799989963756--6767788999999999998740368-995479984145682 No 198 >3bvo_A CO-chaperone protein HSCB, mitochondrial precursor; structural genomics medical relevance, protein structure initiative, PSI-2; 3.00A {Homo sapiens} Probab=39.81 E-value=5.1 Score=19.75 Aligned_cols=45 Identities=11% Similarity=0.143 Sum_probs=28.6 Q ss_pred CCEECCCCCCEEEHHHHHHHCCCCCCCCCCEECCHHHHHHHHCCCCCCCCCCCCC Q ss_conf 0105667687221788986338388998962437999999845565420133456 Q gi|254780820|r 25 LWVKCPETGAMVYHKDLKENQWVISSSDFHMKIPAKERLKFLFDNAKYCLLDQPQ 79 (284) Q Consensus 25 lW~kCp~C~~~i~~~~l~~n~~VCp~C~~H~rl~areRi~~l~D~gsf~Ei~~~~ 79 (284) --..|.+|+..+.... .+...|++||.-.+... +.+-|+.++-+. T Consensus 9 ~~~~cw~c~~~~~~~~--~~~~~C~~c~~~q~~~~--------~~dyy~iLgl~~ 53 (207) T 3bvo_A 9 NYPRCWNCGGPWGPGR--EDRFFCPQCRALQAPDP--------TRDYFSLMDCNR 53 (207) T ss_dssp --CBCSSSCCBCCSSC--SCCCBCTTTCCBCCCCT--------TCCHHHHTTSCS T ss_pred CCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCC--------CCCHHHHCCCCC T ss_conf 9998999989866567--65752565566799988--------888799809898 No 199 >4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ... Probab=39.78 E-value=5.5 Score=19.47 Aligned_cols=25 Identities=24% Similarity=0.679 Sum_probs=13.6 Q ss_pred EECCCCCCEEEHH----------------HHHHHCCCCCCCCC Q ss_conf 0566768722178----------------89863383889989 Q gi|254780820|r 27 VKCPETGAMVYHK----------------DLKENQWVISSSDF 53 (284) Q Consensus 27 ~kCp~C~~~i~~~----------------~l~~n~~VCp~C~~ 53 (284) ..|+.|+ .+|.+ +|-+ -|+||.|+. T Consensus 4 y~C~~Cg-yiYdp~~Gd~~~gi~pGT~F~~LP~-dw~CP~C~a 44 (54) T 4rxn_A 4 YTCTVCG-YIYDPEDGDPDDGVNPGTDFKDIPD-DWVCPLCGV 44 (54) T ss_dssp EEETTTC-CEECTTTCBGGGTBCTTCCGGGSCT-TCBCTTTCC T ss_pred EECCCCC-CEECCCCCCCCCCCCCCCCHHHCCC-CCCCCCCCC T ss_conf 5939999-0877554884568798999788899-888939989 No 200 >2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Probab=39.62 E-value=7.2 Score=18.64 Aligned_cols=38 Identities=18% Similarity=0.179 Sum_probs=25.0 Q ss_pred EECCCCCCEEEHHH-H--------HHHCCCCCCCCCCEECCHHHHHH Q ss_conf 05667687221788-9--------86338388998962437999999 Q gi|254780820|r 27 VKCPETGAMVYHKD-L--------KENQWVISSSDFHMKIPAKERLK 64 (284) Q Consensus 27 ~kCp~C~~~i~~~~-l--------~~n~~VCp~C~~H~rl~areRi~ 64 (284) .+|+.|+.....+. | .++.|.|+.|++-|.-...-+.- T Consensus 19 ~~C~~C~~~f~~~~~l~~H~~~H~~~~~y~C~~C~k~F~~~~~L~~H 65 (77) T 2cot_A 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGH 65 (77) T ss_dssp SBCSSSCCBCSCHHHHHHHHTTTCCSCSEECSSSCCEESSHHHHHHH T ss_pred CCCCCCCCEECCHHHHHHHHHHHCCCCCCCCCCCCCEECCHHHHHHH T ss_conf 08999999858766748999860788887589888861888999999 No 201 >1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A Probab=39.38 E-value=18 Score=15.74 Aligned_cols=65 Identities=23% Similarity=0.329 Sum_probs=42.4 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHH--H---------HCCCCEEEEEC Q ss_conf 853577899999999999986289689997688877652124677778899999999--8---------62998899856 Q gi|254780820|r 133 GGSIGIAAGEAIVKSCERAIAEKCPLVMFTASGGARMQEGILSLMQLPRTTIAINML--K---------DAGLPYIVVLT 201 (284) Q Consensus 133 GGSmG~~~geki~~a~e~A~~~~~PlI~~~~SGGaRMqEG~~sL~qMakt~~a~~~l--~---------~~~lP~I~vl~ 201 (284) -|-+|...-|--..|+++|.++++|+..+|-+ ||++-+-.|-+-+ + +..-|.|.++. T Consensus 362 PGGFG~RGiEGKI~Ai~yARen~IPfLGICLG------------mQ~avIEfARNVlgl~dAnStEfd~~t~~pVI~lm~ 429 (550) T 1vco_A 362 PGGFGVRGIEGKVRAAQYARERKIPYLGICLG------------LQIAVIEFARNVAGLKGANSTEFDPHTPHPVIDLMP 429 (550) T ss_dssp CCCCSSTTHHHHHHHHHHHHHTTCCEEEETHH------------HHHHHHHHHHHTSCCTTCEETTTCTTCSCEEEEESC T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCC------------HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECH T ss_conf 17787677458999999898739984200122------------469999999984499999855779999997798654 Q ss_pred C----CCCCEEE Q ss_conf 7----6420111 Q gi|254780820|r 202 N----PTTGGVT 209 (284) Q Consensus 202 ~----pt~GGv~ 209 (284) . --.||+. T Consensus 430 eq~~~~~~GGTM 441 (550) T 1vco_A 430 EQLEVEGLGGTM 441 (550) T ss_dssp GGGCC---CCCC T ss_pred HHCCCCCCCCCC T ss_conf 632157755431 No 202 >1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A 1rwd_A 1qcv_A 2pve_A 2pvx_A ... Probab=39.02 E-value=6.2 Score=19.09 Aligned_cols=25 Identities=28% Similarity=0.699 Sum_probs=14.3 Q ss_pred EECCCCCCEEEHHH----------------HHHHCCCCCCCCC Q ss_conf 05667687221788----------------9863383889989 Q gi|254780820|r 27 VKCPETGAMVYHKD----------------LKENQWVISSSDF 53 (284) Q Consensus 27 ~kCp~C~~~i~~~~----------------l~~n~~VCp~C~~ 53 (284) .+|..|+ .+|.++ |- ..|+||-|+. T Consensus 3 y~C~~Cg-yiYdp~~Gd~~~~i~pGT~F~~LP-~dw~CP~C~a 43 (52) T 1yk4_A 3 LSCKICG-YIYDEDEGDPDNGISPGTKFEDLP-DDWVCPLCGA 43 (52) T ss_dssp EEESSSS-CEEETTTCBGGGTBCTTCCGGGSC-TTCBCTTTCC T ss_pred CCCCCCC-EEECCCCCCCCCCCCCCCCHHHCC-CCCCCCCCCC T ss_conf 4869999-388876688466869999978889-9887949988 No 203 >2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus dsm 3638} PDB: 2dcu_B* Probab=38.55 E-value=3.2 Score=21.20 Aligned_cols=34 Identities=18% Similarity=0.149 Sum_probs=17.4 Q ss_pred CCEECCCCCCE--EEHHHHHHHCCCCCCCCCCEECC Q ss_conf 01056676872--21788986338388998962437 Q gi|254780820|r 25 LWVKCPETGAM--VYHKDLKENQWVISSSDFHMKIP 58 (284) Q Consensus 25 lW~kCp~C~~~--i~~~~l~~n~~VCp~C~~H~rl~ 58 (284) -++.||.|+.. .+.++=...+-.|..||..-.+. T Consensus 103 ~yVlC~~C~spdT~l~k~~r~~~l~C~aCGa~~~V~ 138 (148) T 2d74_B 103 EYVICPVCGSPDTKIIKRDRFHFLKCEACGAETPIQ 138 (148) T ss_dssp HHSSCSSSCCTTCCCCBSSSSBCCCCSSSCCCCCCC T ss_pred HEEECCCCCCCCCEEEEECCEEEEEECCCCCCCCHH T ss_conf 589999999974099995880999805689998507 No 204 >1v54_F VI, cytochrome C oxidase polypeptide VB; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: g.41.5.3 PDB: 1oco_F* 1occ_F* 1ocz_F* 1ocr_F* 1v55_F* 2dyr_F* 2dys_F* 2eij_F* 2eik_F* 2eil_F* 2eim_F* 2ein_F* 2occ_F* 2zxw_F* 3abk_F* 3abl_F* 3abm_F* 3ag1_F* 3ag2_F* 3ag3_F* ... Probab=38.48 E-value=8.2 Score=18.20 Aligned_cols=17 Identities=24% Similarity=0.157 Sum_probs=12.7 Q ss_pred HHHCCCCCCCCCCEECC Q ss_conf 86338388998962437 Q gi|254780820|r 42 KENQWVISSSDFHMKIP 58 (284) Q Consensus 42 ~~n~~VCp~C~~H~rl~ 58 (284) +.+-.-||.||++|+|- T Consensus 76 ~g~p~RC~eCG~~fkL~ 92 (98) T 1v54_F 76 KGEAQRCPSCGTHYKLV 92 (98) T ss_dssp SSSCEECTTTCCEEEEE T ss_pred CCCCCCCCCCCCEEEEE T ss_conf 79963458778589986 No 205 >3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} Probab=38.39 E-value=16 Score=16.09 Aligned_cols=41 Identities=29% Similarity=0.447 Sum_probs=27.7 Q ss_pred HHHHCCCEEEEECCCCC-CCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECC Q ss_conf 98628968999768887-76521246777788999999998629988998567 Q gi|254780820|r 151 AIAEKCPLVMFTASGGA-RMQEGILSLMQLPRTTIAINMLKDAGLPYIVVLTN 202 (284) Q Consensus 151 A~~~~~PlI~~~~SGGa-RMqEG~~sL~qMakt~~a~~~l~~~~lP~I~vl~~ 202 (284) |....+|+|.+.-++|. -...+.+|..||| .|+|.-+|.-| T Consensus 81 A~~t~~PVIgvP~~~~~~~g~dallS~vqMP-----------~GvpVatv~I~ 122 (174) T 3lp6_A 81 AAATPLPVIGVPVPLGRLDGLDSLLSIVQMP-----------AGVPVATVSIG 122 (174) T ss_dssp HHHCSSCEEEEEECCSSGGGHHHHHHHHCCC-----------TTCCCEECCTT T ss_pred HHCCCCCEEECCCCCCCCCCCCHHHHHHHCC-----------CCCCEEEEECC T ss_conf 5546887794557767767732077798589-----------98866777537 No 206 >1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1 Probab=38.32 E-value=2.3 Score=22.36 Aligned_cols=34 Identities=9% Similarity=0.064 Sum_probs=19.8 Q ss_pred CCEECCCCCCE--EEHHHHHHHCCCCCCCCCCEECC Q ss_conf 01056676872--21788986338388998962437 Q gi|254780820|r 25 LWVKCPETGAM--VYHKDLKENQWVISSSDFHMKIP 58 (284) Q Consensus 25 lW~kCp~C~~~--i~~~~l~~n~~VCp~C~~H~rl~ 58 (284) -++.||.|+.. .+.++=...+-.|..||....+. T Consensus 101 ~yVlC~~C~~pdT~l~k~~r~~~l~C~aCGa~~~V~ 136 (138) T 1nee_A 101 KFVICHECNRPDTRIIREGRISLLKCEACGAKAPLK 136 (138) T ss_dssp HHHHHTCCSSCSSCCEEETTTTEEECSTTSCCCCSC T ss_pred HEEECCCCCCCCEEEEEECCEEEEECCCCCCCCCCC T ss_conf 778999999985089995892899814689998567 No 207 >3brs_A Periplasmic binding protein/LACI transcriptional regulator; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans isdg} Probab=38.31 E-value=19 Score=15.54 Aligned_cols=29 Identities=24% Similarity=0.422 Sum_probs=13.2 Q ss_pred HHHHCCCCCEEE--CHHHHHHH-HHHHHHHHH Q ss_conf 999689835373--58999999-999999972 Q gi|254780820|r 252 YLVEHGMIDRIV--HRHDIPEV-VSSLCKILT 280 (284) Q Consensus 252 ~l~~~G~iD~iv--~r~~l~~~-i~~ll~il~ 280 (284) -.++.|.+...| +..++-.. +..+++.+. T Consensus 231 ~~i~~G~i~~tv~q~~~~~G~~av~~l~~~l~ 262 (289) T 3brs_A 231 QYLEEGIFEAMVVQKPFNIGYLGVEKALKLLK 262 (289) T ss_dssp ----CCSCCEEEECCHHHHHHHHHHHHHHHHH T ss_pred HHHHCCCCEEEEECCHHHHHHHHHHHHHHHHC T ss_conf 99875996299948999999999999999976 No 208 >2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open active site loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A* Probab=37.84 E-value=0.36 Score=28.28 Aligned_cols=125 Identities=17% Similarity=0.273 Sum_probs=60.9 Q ss_pred ECHHHCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCE Q ss_conf 33031853577899999999999986289689997688877652124677778899999999862998899856764201 Q gi|254780820|r 128 EFSFIGGSIGIAAGEAIVKSCERAIAEKCPLVMFTASGGARMQEGILSLMQLPRTTIAINMLKDAGLPYIVVLTNPTTGG 207 (284) Q Consensus 128 df~F~GGSmG~~~geki~~a~e~A~~~~~PlI~~~~SGGaRMqEG~~sL~qMakt~~a~~~l~~~~lP~I~vl~~pt~GG 207 (284) .+.-||++++.+.|-++. ....|++++..=|+.=| .+- +|......++|.+.|+.|.-.+| T Consensus 420 ~~g~iG~~l~~Aiga~~a-------~~~~~vv~i~GDgsf~~--~~~----------eL~ta~~~~~pi~ivV~NN~g~g 480 (565) T 2nxw_A 420 YYAGMGFGVPAGIGAQCV-------SGGKRILTVVGDGAFQM--TGW----------ELGNCRRLGIDPIVILFNNASWE 480 (565) T ss_dssp TTCCTTCHHHHHHHHHHH-------TTTCCEEEEEEHHHHHH--HGG----------GGGGHHHHTCCCEEEEEECSBCH T ss_pred CCCCCCCCCHHHHHHHHH-------CCCCEEEEEECCHHHCC--CHH----------HHHHHHHHCCCCEEEEEECCCCH T ss_conf 656677761589999970-------99980899988247404--799----------99999982989199999899773 Q ss_pred EE------EEECCCCCEEEEECCCEEECCCHHHHHHHHCCCCCCCCHHH--HHHHHCC---CCCEEECHHHHHHHHHHHH Q ss_conf 11------12014685255531421102327887876367788720215--9999689---8353735899999999999 Q gi|254780820|r 208 VT------ASYAMLGDIHLAEPGAEIGFAGRRVIEQTVREKLPDGFQRS--EYLVEHG---MIDRIVHRHDIPEVVSSLC 276 (284) Q Consensus 208 v~------AS~a~lgDiiiaep~a~igFaG~rVi~~t~~~~lp~~fqta--e~l~~~G---~iD~iv~r~~l~~~i~~ll 276 (284) .. ..|..+.++-++.=-.-.|+.|-+| +. |++|..+ +.+-..| +|+.+++|.+..+.+..++ T Consensus 481 ~~~~~q~~~~~~~~~~~d~~~~A~a~G~~~~~v---~~----~~el~~al~~a~~~~~~~~liev~vd~~~~~~~~~~~~ 553 (565) T 2nxw_A 481 MLRTFQPESAFNDLDDWRFADMAAGMGGDGVRV---RT----RAELKAALDKAFATRGRFQLIEAMIPRGVLSDTLARFV 553 (565) T ss_dssp HHHHHCTTCGGGBCCCCCHHHHTGGGTSEEEEE---CB----HHHHHHHHHHHHHCCSSCEEEEEECCTTCCCHHHHHHH T ss_pred HHEHHCCCCCCCCCCCCCHHHHHHHCCCEEEEE---CC----HHHHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHH T ss_conf 143015567778899999999999779869997---99----99999999999844797399999808764778999987 Q ss_pred HH Q ss_conf 99 Q gi|254780820|r 277 KI 278 (284) Q Consensus 277 ~i 278 (284) .- T Consensus 554 ~~ 555 (565) T 2nxw_A 554 QG 555 (565) T ss_dssp HH T ss_pred HH T ss_conf 61 No 209 >3n9n_A Putative uncharacterized protein; methylation, demethylase, PHD, JMJC, Fe(II) and ALP (alpha-ketoglutarate)-dependent dioxygenase family, oxidore; HET: M3L MLY OGA; 2.30A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* Probab=37.81 E-value=11 Score=17.37 Aligned_cols=33 Identities=9% Similarity=0.204 Sum_probs=21.3 Q ss_pred CCCCEECCCCCCEEEHH-------HH-HHHCCCCCCCCCCE Q ss_conf 46010566768722178-------89-86338388998962 Q gi|254780820|r 23 ENLWVKCPETGAMVYHK-------DL-KENQWVISSSDFHM 55 (284) Q Consensus 23 ~~lW~kCp~C~~~i~~~-------~l-~~n~~VCp~C~~H~ 55 (284) +-.|++|..|..=.+.. +. .-..|.||+|--++ T Consensus 55 ~~~WI~Cd~C~~WfH~~Cv~~~~~~~~~id~y~C~~C~~~~ 95 (528) T 3n9n_A 55 DFQWIGCDSCQTWYHFLCSGLEQFEYYLYEKFFCPKCVPHT 95 (528) T ss_dssp TTEEEECTTTCCEEEGGGSSCCGGGTTTEEECCCTTTGGGT T ss_pred CCCEEECCCCCCCEEEECCCCCCCCCCCCCEEECCCCCCCC T ss_conf 88567279999878524589872034777178993985678 No 210 >2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Probab=37.68 E-value=7.1 Score=18.66 Aligned_cols=32 Identities=13% Similarity=0.149 Sum_probs=24.0 Q ss_pred CEECCCCCCEEEHHHHHHHC-------CCCCCCCCCEEC Q ss_conf 10566768722178898633-------838899896243 Q gi|254780820|r 26 WVKCPETGAMVYHKDLKENQ-------WVISSSDFHMKI 57 (284) Q Consensus 26 W~kCp~C~~~i~~~~l~~n~-------~VCp~C~~H~rl 57 (284) .++|+.|+..+...+|+.-. ..||.|+--++. T Consensus 17 ~~~C~~C~~~~~~~~l~~H~~~C~~~~~~C~~C~~~~~r 55 (75) T 2d9k_A 17 LAVCQHCDLELSILKLKEHEDYCGARTELCGNCGRNVLV 55 (75) T ss_dssp CEECSSSCCEECHHHHHHHHHHHHHCEEECSSSCCEEET T ss_pred CEECCCCCCEECCCHHHHHHHHCCCCCEECCCCCEECCH T ss_conf 807899987677211767986379977748986928528 No 211 >1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Probab=37.44 E-value=19 Score=15.44 Aligned_cols=46 Identities=11% Similarity=0.033 Sum_probs=29.2 Q ss_pred CCCCCCCCEECCCCCCEEEHHH-H------HHHCCCCCCCCCCEECCHHHHHH Q ss_conf 2477460105667687221788-9------86338388998962437999999 Q gi|254780820|r 19 RAIPENLWVKCPETGAMVYHKD-L------KENQWVISSSDFHMKIPAKERLK 64 (284) Q Consensus 19 k~ip~~lW~kCp~C~~~i~~~~-l------~~n~~VCp~C~~H~rl~areRi~ 64 (284) +.+.+.-+.+|..|+..+.... | -...|.|+.|+.-|.-...-+.- T Consensus 9 ~~~~~~~~f~C~~C~~~F~~~~~l~~H~~~h~~~~~C~~C~~~F~~~~~l~~H 61 (107) T 1wjp_A 9 SPVENKEVYQCRLCNAKLSSLLEQGSHERLCRNAAVCPYCSLRFFSPELKQEH 61 (107) T ss_dssp CCCCCCCCCBCTTTCCBCSSHHHHHHHHHHHHHSBCCTTTCCCBSSHHHHHHH T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCEECCHHHHHHH T ss_conf 98999978359498995678899997831769896989998843788999999 No 212 >2zkr_z 60S ribosomal protein L37A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} PDB: 1ysh_D Probab=37.23 E-value=2.9 Score=21.59 Aligned_cols=32 Identities=13% Similarity=0.092 Sum_probs=23.1 Q ss_pred CCEECCCCCCEEEHHHHHHHCCCCCCCCCCEEC Q ss_conf 010566768722178898633838899896243 Q gi|254780820|r 25 LWVKCPETGAMVYHKDLKENQWVISSSDFHMKI 57 (284) Q Consensus 25 lW~kCp~C~~~i~~~~l~~n~~VCp~C~~H~rl 57 (284) -=..||.|+..-.++. .--.|.|.+|++-|-= T Consensus 35 ~ky~Cp~Cgk~~vkR~-a~GIW~C~kC~~~~AG 66 (92) T 2zkr_z 35 AKYTCSFCGKTKMKRR-AVGIWHCGSCMKTVAG 66 (92) T ss_dssp SCBCCSSSCSSCEEEE-ETTEEEETTTCCEEEC T ss_pred CCCCCCCCCCCEEEEE-EEEEEECCCCCCEEEC T ss_conf 7850999999877889-9888684799998856 No 213 >2h9a_B CO dehydrogenase/acetyl-COA synthase, iron- sulfur protein; heterodimer, beta-alpha-barrels, oxidoreductase; HET: B12; 1.90A {Carboxydothermus hydrogenoformans} Probab=37.04 E-value=11 Score=17.35 Aligned_cols=125 Identities=11% Similarity=0.038 Sum_probs=65.8 Q ss_pred CHHHHHHHHCCCCCCCCCCCCCCCCHHCCCCCC-CCHHHHHHHHHHHCCCCCCEE-------------EEEEEEECEEEE Q ss_conf 799999984556542013345687020186764-203566776664216677169-------------998787041499 Q gi|254780820|r 58 PAKERLKFLFDNAKYCLLDQPQVCQDPLKFRDN-KKYIDRLKENRSKTGLIDSIV-------------SAVGNVRDFKLV 123 (284) Q Consensus 58 ~areRi~~l~D~gsf~Ei~~~~~~~DPL~F~d~-k~Y~drl~~a~~kTg~~davv-------------~G~G~I~G~~vv 123 (284) .+-+|....++.| =.-|+-...|.||-...-+ ....+|++...+.+...-.+. .|.-.+++.... T Consensus 75 d~v~~Ak~~ve~G-ADiIdIg~~StrPg~~~vs~eee~~rV~~V~~~v~~pl~i~~~~~d~~d~~v~~~al~~~~~~~~l 153 (310) T 2h9a_B 75 DPVAWAKKCVEYG-ADIVALRLVSAHPDGQNRSGAELAEVCKAVADAIDVPLMIIGCGVEEKDAEIFPVIGEALSGRNCL 153 (310) T ss_dssp CHHHHHHHHHHTT-CSEEEEECGGGCTTTTCCCHHHHHHHHHHHHHHCSSCEEEECCSCHHHHHHHHHHHHHHTTTSCCE T ss_pred HHHHHHHHHHHCC-CCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCC T ss_conf 6999999999729-988997151189998878999999999999998689807423424466499999999973510356 Q ss_pred EEEEECHHHCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCC Q ss_conf 99983303185357789999999999998628968999768887765212467777889999999986299889985676 Q gi|254780820|r 124 AVVHEFSFIGGSIGIAAGEAIVKSCERAIAEKCPLVMFTASGGARMQEGILSLMQLPRTTIAINMLKDAGLPYIVVLTNP 203 (284) Q Consensus 124 v~~~df~F~GGSmG~~~geki~~a~e~A~~~~~PlI~~~~SGGaRMqEG~~sL~qMakt~~a~~~l~~~~lP~I~vl~~p 203 (284) + +.+..+..-..++.|.+.++|+|.... ++ +-.|-|+ ..++.++|+|.=-++.|| T Consensus 154 i------------~~~~~~n~~~m~~~a~~~~~pvi~~~~------~d-~~~~k~l------~~~l~~~GI~~~~IilDP 208 (310) T 2h9a_B 154 L------------SSATKDNYKPIVATCMVHGHSVVASAP------LD-INLSKQL------NIMIMEMNLAPNRIIMDP 208 (310) T ss_dssp E------------EEECTTTHHHHHHHHHHHTCEEEEECS------SC-HHHHHHH------HHHHHTTTCCGGGEEEEC T ss_pred C------------CCCCCCCHHHHHHHHHHCCCCEEEECC------CC-HHHHHHH------HHHHHHCCCCHHHEEEEC T ss_conf 2------------335400148999999982998999878------53-8999999------999998699977889815 Q ss_pred CCCEE Q ss_conf 42011 Q gi|254780820|r 204 TTGGV 208 (284) Q Consensus 204 t~GGv 208 (284) .+||. T Consensus 209 Gig~f 213 (310) T 2h9a_B 209 LIGAL 213 (310) T ss_dssp CCCCT T ss_pred CCCCC T ss_conf 76434 No 214 >1nrw_A Hypothetical protein, haloacid dehalogenase-like hydrolase; structural genomics, PSI, protein structure initiative; 1.70A {Bacillus subtilis} SCOP: c.108.1.10 Probab=36.97 E-value=16 Score=16.13 Aligned_cols=26 Identities=15% Similarity=-0.006 Sum_probs=13.9 Q ss_pred HHHHHHHHHHHHHHCCCEEEEECCCC Q ss_conf 99999999999862896899976888 Q gi|254780820|r 141 GEAIVKSCERAIAEKCPLVMFTASGG 166 (284) Q Consensus 141 geki~~a~e~A~~~~~PlI~~~~SGG 166 (284) .+.+...++...+++.++..++..+. T Consensus 87 ~~~~~~i~~~~~~~~~~~~~~~~~~~ 112 (288) T 1nrw_A 87 KKRAYDILSWLESENYYYEVFTGSAI 112 (288) T ss_dssp HHHHHHHHHHHHHTTCEEEEEESSCE T ss_pred HHHHHHHHHHHHHCCCEEEEEECCEE T ss_conf 89999999999976962899708758 No 215 >1uwc_A Feruloyl esterase A; hydrolase, serine esterase, xylan degradation; HET: NAG FER; 1.08A {Aspergillus niger} SCOP: c.69.1.17 PDB: 1uza_A* 2hl6_A* 2ix9_A* 1usw_A* 2bjh_A* Probab=36.71 E-value=3 Score=21.40 Aligned_cols=71 Identities=10% Similarity=0.052 Sum_probs=40.0 Q ss_pred CCCCCCCCCCHHHHHHH--HHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCCEEEEE-CCCEEECCCHHH Q ss_conf 68887765212467777--8899999999862998899856764201111201468525553-142110232788 Q gi|254780820|r 163 ASGGARMQEGILSLMQL--PRTTIAINMLKDAGLPYIVVLTNPTTGGVTASYAMLGDIHLAE-PGAEIGFAGRRV 234 (284) Q Consensus 163 ~SGGaRMqEG~~sL~qM--akt~~a~~~l~~~~lP~I~vl~~pt~GGv~AS~a~lgDiiiae-p~a~igFaG~rV 234 (284) ..++.+++.|.....+. .++...+.++.+..--+=.++|+-..||..|+.+.+ ++.... +-..+.|+.||| T Consensus 90 ~~~~~~VH~GF~~~~~~~~~~i~~~l~~~~~~~p~~~i~vtGHSLGGAlA~l~a~-~l~~~~~~i~~~tFG~Prv 163 (261) T 1uwc_A 90 QCNDCEVHGGYYIGWISVQDQVESLVKQQASQYPDYALTVTGHSLGASMAALTAA-QLSATYDNVRLYTFGEPRS 163 (261) T ss_dssp TSTTCEEEHHHHHHHHHHHHHHHHHHHHHHHHSTTSEEEEEEETHHHHHHHHHHH-HHHTTCSSEEEEEESCCCC T ss_pred CCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHH-HHHHCCCCEEEEEECCCCC T ss_conf 8998598426999999999999999999997789945998345741788999999-9985389812898469987 No 216 >2owo_A DNA ligase; protein/DNA complex, ligase/DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli K12} Probab=36.54 E-value=6.7 Score=18.83 Aligned_cols=39 Identities=21% Similarity=0.250 Sum_probs=24.9 Q ss_pred EECCCCCCEEEHHHHHHHCCCCC--CCCCCEECCHHHHHHHHCCC Q ss_conf 05667687221788986338388--99896243799999984556 Q gi|254780820|r 27 VKCPETGAMVYHKDLKENQWVIS--SSDFHMKIPAKERLKFLFDN 69 (284) Q Consensus 27 ~kCp~C~~~i~~~~l~~n~~VCp--~C~~H~rl~areRi~~l~D~ 69 (284) ..||+|+..+...+=+..+++|+ .| +--..+||.+++-. T Consensus 406 ~~CP~c~~~l~~~~~~~~~~c~n~~~C----~aq~~~~i~hF~sk 446 (671) T 2owo_A 406 THCPVCGSDVERVEGEAVARCTGGLIC----GAQRKESLKHFVSR 446 (671) T ss_dssp SBCTTTCCBEEECTTCSCEEECCGGGC----HHHHHHHHHHHHST T ss_pred CCCCCCCCEEEEECCCEEEEECCCCCC----HHHHHHHHHHHHHH T ss_conf 889988975577469734896898763----89999999999875 No 217 >1to6_A Glycerate kinase; glycerate metabolism, structural genomics T831, PSI, protein structure initiative; 2.50A {Neisseria meningitidis serogroup A} SCOP: c.141.1.1 Probab=36.51 E-value=7 Score=18.70 Aligned_cols=19 Identities=16% Similarity=0.489 Sum_probs=7.7 Q ss_pred HHHHHHHHHHHCCCCEEEE Q ss_conf 8999999998629988998 Q gi|254780820|r 181 RTTIAINMLKDAGLPYIVV 199 (284) Q Consensus 181 kt~~a~~~l~~~~lP~I~v 199 (284) |+...+.++.+.++|.|.| T Consensus 297 K~p~~Va~~ak~~vPviai 315 (371) T 1to6_A 297 KAPIGVAKRTPVGVPVVAI 315 (371) T ss_dssp CHHHHHHTTSCTTCCEEEE T ss_pred CHHHHHHHHHHCCCCEEEE T ss_conf 7899999997679988999 No 218 >2f9z_C Protein (chemotaxis methylation protein); bacterial chemotaxis, signal transduction, receptor deamidase, aspartyl phosphatase; 2.40A {Thermotoga maritima MSB8} SCOP: d.194.1.3 Probab=36.21 E-value=20 Score=15.31 Aligned_cols=81 Identities=17% Similarity=0.152 Sum_probs=40.9 Q ss_pred HHHHHHHHHHHHHHCCCE--EEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEE-CCCCC Q ss_conf 999999999998628968--999768887765212467777889999999986299889985676420111120-14685 Q gi|254780820|r 141 GEAIVKSCERAIAEKCPL--VMFTASGGARMQEGILSLMQLPRTTIAINMLKDAGLPYIVVLTNPTTGGVTASY-AMLGD 217 (284) Q Consensus 141 geki~~a~e~A~~~~~Pl--I~~~~SGGaRMqEG~~sL~qMakt~~a~~~l~~~~lP~I~vl~~pt~GGv~AS~-a~lgD 217 (284) -..+-.+++.-.+.+..- +-.---|||+|-++...=..---+.+|.+-|++.|+|.++--++-..| =+-.| ...|+ T Consensus 64 d~ai~~Li~~m~~~Ga~~~~l~aklfGGA~m~~~~~~~IG~rN~~~a~~~L~~~gi~i~a~dvGG~~g-R~i~f~~~tG~ 142 (159) T 2f9z_C 64 DTAVKTLVEELKKMGAKVERLEAKIAGGASMFESKGMNIGARNVEAVKKHLKDFGIKLLAEDTGGNRA-RSVEYNIETGK 142 (159) T ss_dssp HHHHHHHHHHHHTTTCCGGGCEEEEEECCCCSCCCSSCHHHHHHHHHHHHHHHTTCCEEEEEECCSSC-EEEEEETTTTE T ss_pred HHHHHHHHHHHHHCCCCHHHEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCC-CEEEEECCCCE T ss_conf 99999999999985998799899998574226788998369999999999998699389865699987-38999968988 Q ss_pred EEEEE Q ss_conf 25553 Q gi|254780820|r 218 IHLAE 222 (284) Q Consensus 218 iiiae 222 (284) +.+-. T Consensus 143 v~v~~ 147 (159) T 2f9z_C 143 LLVRK 147 (159) T ss_dssp EEEEC T ss_pred EEEEE T ss_conf 99998 No 219 >3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens} Probab=35.87 E-value=6.2 Score=19.09 Aligned_cols=34 Identities=9% Similarity=0.062 Sum_probs=24.5 Q ss_pred CEECCCCCCEEE--H-HHHHHHCCCCCCCCCCEECCH Q ss_conf 105667687221--7-889863383889989624379 Q gi|254780820|r 26 WVKCPETGAMVY--H-KDLKENQWVISSSDFHMKIPA 59 (284) Q Consensus 26 W~kCp~C~~~i~--~-~~l~~n~~VCp~C~~H~rl~a 59 (284) =..|.+|+..+- - -+-..+.|+|+-|++...+++ T Consensus 94 p~RC~~C~aylNp~~~~~~~~~~W~C~~C~~~N~lp~ 130 (766) T 3eh2_A 94 PLRCNRCKAYMCPFMQFIEGGRRFQCCFCSCINDVPP 130 (766) T ss_dssp CCBCTTTCCBCCTTCEEEGGGTEEECTTTCCEEECCT T ss_pred CCCCCCCCCEECCEEEEECCCCEEECCCCCCCCCCCH T ss_conf 9827677488987069967999898548998489996 No 220 >1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B* Probab=35.61 E-value=12 Score=16.88 Aligned_cols=46 Identities=13% Similarity=0.294 Sum_probs=28.4 Q ss_pred EECCCCCCEEEHHHHHHHCCCCCCCCCCEECCHHHHHHHH---CCCCCCCCCCC Q ss_conf 0566768722178898633838899896243799999984---55654201334 Q gi|254780820|r 27 VKCPETGAMVYHKDLKENQWVISSSDFHMKIPAKERLKFL---FDNAKYCLLDQ 77 (284) Q Consensus 27 ~kCp~C~~~i~~~~l~~n~~VCp~C~~H~rl~areRi~~l---~D~gsf~Ei~~ 77 (284) ..|-.||- .+..| -.-||+||..--=+.|.||+.| ..+..|...++ T Consensus 582 krcrdcgy-qfted----rescpkcgsenvdnsrsriealrklahdaefvivgt 630 (1054) T 1gku_B 582 KRCRDCGY-QFTED----RESCPKCGSENVDNSRSRIEALRKLAHDAEFVIVGT 630 (1054) T ss_dssp C-----------------------------CCHHHHHHHHHHHHHHHSEEEECC T ss_pred HHHHHCCC-CCCCC----CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEC T ss_conf 57875587-24655----334864466556552889999997504670899807 No 221 >2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens} Probab=35.34 E-value=9.9 Score=17.59 Aligned_cols=32 Identities=13% Similarity=0.256 Sum_probs=16.9 Q ss_pred CCCCCCCCEECCCCCCEEEHHHHHHHCCCCCCCCCCEECCH Q ss_conf 24774601056676872217889863383889989624379 Q gi|254780820|r 19 RAIPENLWVKCPETGAMVYHKDLKENQWVISSSDFHMKIPA 59 (284) Q Consensus 19 k~ip~~lW~kCp~C~~~i~~~~l~~n~~VCp~C~~H~rl~a 59 (284) .++++. ..||-|.+.+- +-.+. .|||.|=... T Consensus 7 ~~i~~~--l~C~IC~~~~~------~pv~~-~CgH~fC~~C 38 (79) T 2egp_A 7 GNVQEE--VTCPICLELLT------EPLSL-DCGHSLCRAC 38 (79) T ss_dssp CCCCCC--CEETTTTEECS------SCCCC-SSSCCCCHHH T ss_pred CCCCCC--CCCCCCCCCCC------CCEEC-CCCCCHHHHH T ss_conf 567526--89957793116------80776-8988788999 No 222 >2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8 Probab=35.04 E-value=3.4 Score=21.04 Aligned_cols=31 Identities=13% Similarity=0.291 Sum_probs=22.4 Q ss_pred CCEECCCCCCEEEHHHHHHHCCCCCCCCCCEE Q ss_conf 01056676872217889863383889989624 Q gi|254780820|r 25 LWVKCPETGAMVYHKDLKENQWVISSSDFHMK 56 (284) Q Consensus 25 lW~kCp~C~~~i~~~~l~~n~~VCp~C~~H~r 56 (284) +=..||+||.=+|--+-.+ -+.|-+|+|-.- T Consensus 17 ~~k~CP~CG~GvFmA~H~d-R~~CGKCgyTef 47 (55) T 2k4x_A 17 KHRFCPRCGPGVFLAEHAD-RYSCGRCGYTEF 47 (55) T ss_dssp SSCCCTTTTTTCCCEECSS-EEECTTTCCCEE T ss_pred ECCCCCCCCCCEEEEECCC-CCCCCCCCCEEE T ss_conf 3375989999477200589-756367554488 No 223 >1yn9_A BVP, polynucleotide 5'-phosphatase; RNA triphosphatase, cysteine phosphatase, P-loop, hydrolase; HET: PO4; 1.50A {Autographa californicanucleopolyhedrovirus} Probab=34.51 E-value=10 Score=17.48 Aligned_cols=66 Identities=11% Similarity=0.122 Sum_probs=32.9 Q ss_pred EECHHHCCCC-CHHHHHHHHHHHHHHHHH--CCCEEEEECCCCCCCCCCHHHH-HHHHH----HHHHHHHHHHCCC Q ss_conf 8330318535-778999999999999862--8968999768887765212467-77788----9999999986299 Q gi|254780820|r 127 HEFSFIGGSI-GIAAGEAIVKSCERAIAE--KCPLVMFTASGGARMQEGILSL-MQLPR----TTIAINMLKDAGL 194 (284) Q Consensus 127 ~df~F~GGSm-G~~~geki~~a~e~A~~~--~~PlI~~~~SGGaRMqEG~~sL-~qMak----t~~a~~~l~~~~l 194 (284) .++.+-+++. ....-.++...++..+++ +.++.+-|..|=-| -|.+.. .-|.+ ...|++.+++++- T Consensus 82 ~~i~~~d~~~P~~~~i~~f~~~v~~~~~~~~~~~V~VHC~~G~~R--tg~li~~YL~~~~~~s~~~Ai~~~~~~Rp 155 (169) T 1yn9_A 82 KKIQVPGQTLPPESIVQEFIDTVKEFTEKCPGMLVGVHCTHGINR--TGYMVCRYLMHTLGIAPQEAIDRFEKARG 155 (169) T ss_dssp EECCCCSSSCCCHHHHHHHHHHHHHHHHHSTTSEEEEECSSSSHH--HHHHHHHHHHHHHCCCHHHHHHHHHHHHT T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCC--HHHHHHHHHHHHCCCCHHHHHHHHHHHCC T ss_conf 998838999898599999999999999859998699988999974--79999999999729999999999998789 No 224 >2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A Probab=34.49 E-value=21 Score=15.12 Aligned_cols=41 Identities=10% Similarity=0.178 Sum_probs=26.6 Q ss_pred HHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEE Q ss_conf 9999998628968999768887765212467777889999999986299889985 Q gi|254780820|r 146 KSCERAIAEKCPLVMFTASGGARMQEGILSLMQLPRTTIAINMLKDAGLPYIVVL 200 (284) Q Consensus 146 ~a~e~A~~~~~PlI~~~~SGGaRMqEG~~sL~qMakt~~a~~~l~~~~lP~I~vl 200 (284) +..+...++..|+|++|.||. | ...|...|++.|.+-+.++ T Consensus 32 ~~~~~~~d~~~~iv~yC~~G~-r-------------s~~aa~~L~~~G~~~v~~~ 72 (85) T 2jtq_A 32 RIATAVPDKNDTVKVYCNAGR-Q-------------SGQAKEILSEMGYTHVENA 72 (85) T ss_dssp HHHHHCCCTTSEEEEEESSSH-H-------------HHHHHHHHHHTTCSSEEEE T ss_pred HHHHHCCCCCCEEEEECCCCH-H-------------HHHHHHHHHHCCCCEEEEC T ss_conf 345532578877999889982-7-------------9999999998699979976 No 225 >3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* Probab=34.29 E-value=4.5 Score=20.13 Aligned_cols=33 Identities=21% Similarity=0.323 Sum_probs=23.0 Q ss_pred CCCEECCCCCCEEEHHHHHHHCCCCCCCCCCEEC Q ss_conf 6010566768722178898633838899896243 Q gi|254780820|r 24 NLWVKCPETGAMVYHKDLKENQWVISSSDFHMKI 57 (284) Q Consensus 24 ~lW~kCp~C~~~i~~~~l~~n~~VCp~C~~H~rl 57 (284) .-=.+||.|+..-.++ ..--.|.|.+|++-|-= T Consensus 58 ~aky~CpfCgk~~vkR-~a~GIW~C~kCg~~~AG 90 (116) T 3cc2_Z 58 NEDHACPNCGEDRVDR-QGTGIWQCSYCDYKFTG 90 (116) T ss_dssp HSCEECSSSCCEEEEE-EETTEEEETTTCCEEEC T ss_pred CCCCCCCCCCCCCEEE-EEEEEEECCCCCCEEEC T ss_conf 0796098889980388-99899874898988857 No 226 >2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics; 2.10A {Pseudomonas aeruginosa PAO1} SCOP: e.59.1.1 Probab=34.16 E-value=2.4 Score=22.15 Aligned_cols=10 Identities=20% Similarity=0.039 Sum_probs=4.0 Q ss_pred CCCCCCCCEE Q ss_conf 3889989624 Q gi|254780820|r 47 VISSSDFHMK 56 (284) Q Consensus 47 VCp~C~~H~r 56 (284) ||..|+.+.+ T Consensus 255 ~C~~C~~YlK 264 (309) T 2fiy_A 255 TCPSCQGYLK 264 (309) T ss_dssp EETTTTEEEE T ss_pred ECCCCCCEEE T ss_conf 7666678466 No 227 >1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1 Probab=33.74 E-value=17 Score=15.87 Aligned_cols=41 Identities=24% Similarity=0.432 Sum_probs=21.2 Q ss_pred HHHHCCCEEEEECCCCC-CCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECC Q ss_conf 98628968999768887-76521246777788999999998629988998567 Q gi|254780820|r 151 AIAEKCPLVMFTASGGA-RMQEGILSLMQLPRTTIAINMLKDAGLPYIVVLTN 202 (284) Q Consensus 151 A~~~~~PlI~~~~SGGa-RMqEG~~sL~qMakt~~a~~~l~~~~lP~I~vl~~ 202 (284) |....+|+|.+.-.++. -.....+|..||| .|+|.-+|.-+ T Consensus 85 Aa~t~~PVIgVP~~~~~l~G~daLlS~vqMP-----------~GvpVatv~ig 126 (170) T 1xmp_A 85 AAKTNLPVIGVPVQSKALNGLDSLLSIVQMP-----------GGVPVATVAIG 126 (170) T ss_dssp HTTCCSCEEEEEECCTTTTTHHHHHHHHCCC-----------TTCCCEECCSS T ss_pred HHCCCCCEEECCCCCCCCCCHHHHHHHHHCC-----------CCCCEEEEECC T ss_conf 6514853463544675655077899997189-----------99865888778 No 228 >3ir9_A Peptide chain release factor subunit 1; structural genomics, APC36528.1, C-terminal domain, PSI-2, protein structure initiative; 2.21A {Methanosarcina mazei} Probab=33.62 E-value=9.9 Score=17.59 Aligned_cols=32 Identities=9% Similarity=0.057 Sum_probs=20.7 Q ss_pred EECCCCCCEEE------HHHHHHHCCCCCCCCCCEECC Q ss_conf 05667687221------788986338388998962437 Q gi|254780820|r 27 VKCPETGAMVY------HKDLKENQWVISSSDFHMKIP 58 (284) Q Consensus 27 ~kCp~C~~~i~------~~~l~~n~~VCp~C~~H~rl~ 58 (284) .+||+|+...- ..+.......||.||--+... T Consensus 79 ~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~cg~~~~~~ 116 (166) T 3ir9_A 79 TKCSVCGYENKWTRRWKPGEPAPAAGNCPKCGSSLEVT 116 (166) T ss_dssp EEESSSSCEEEEEECCCC--CCCCCCBCTTTCCBEEEE T ss_pred EECCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHH T ss_conf 97589874477876135422333345685446302112 No 229 >1yfu_A 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxidoreductase; 1.90A {Cupriavidus metallidurans} SCOP: b.82.1.20 PDB: 1yfw_A* 1yfx_A* 1yfy_A* Probab=33.59 E-value=6.6 Score=18.91 Aligned_cols=36 Identities=11% Similarity=0.148 Sum_probs=22.6 Q ss_pred CCCCCCCEECCCCCCEEEHHHH-----H-------------HHCCCCCCCCCCE Q ss_conf 4774601056676872217889-----8-------------6338388998962 Q gi|254780820|r 20 AIPENLWVKCPETGAMVYHKDL-----K-------------ENQWVISSSDFHM 55 (284) Q Consensus 20 ~ip~~lW~kCp~C~~~i~~~~l-----~-------------~n~~VCp~C~~H~ 55 (284) ..-|+|--=|++|+..+|...+ + +....|++||.-+ T Consensus 116 ~~~D~l~WyC~~c~~~l~e~~f~~~di~tql~pv~~~F~~see~RTC~~CG~v~ 169 (174) T 1yfu_A 116 GMLDGFEWYCDACGHLVHRVEVQLKSIVTDLPPLFESFYASEDKRRCPHCGQVH 169 (174) T ss_dssp TCCEEEEEECTTTCCEEEEEEECCSCHHHHSHHHHHHHHTCHHHHBCTTTCCBC T ss_pred CCCCCEEEECCCCCCEEEEEEEEEECHHHHHHHHHHHHHCCHHCCCCCCCCCCC T ss_conf 873106997278897899999998456887799999986683106188788838 No 230 >3h7h_A Transcription elongation factor SPT4; helices surrounding beta sheet, activator, metal-binding, nucleus, repressor, transcription regulation, zinc; 1.55A {Homo sapiens} Probab=33.56 E-value=12 Score=16.96 Aligned_cols=49 Identities=6% Similarity=-0.010 Sum_probs=35.5 Q ss_pred CEECCCCCCEEEHHHHHHHCCCCCCCCCCEEC-CHHHHHHHHCCCCCCCCCCC Q ss_conf 10566768722178898633838899896243-79999998455654201334 Q gi|254780820|r 26 WVKCPETGAMVYHKDLKENQWVISSSDFHMKI-PAKERLKFLFDNAKYCLLDQ 77 (284) Q Consensus 26 W~kCp~C~~~i~~~~l~~n~~VCp~C~~H~rl-~areRi~~l~D~gsf~Ei~~ 77 (284) -.-|-.|+-+.-..++.++ =||+|.-++.| ..++++.--.- -+|+=+-. T Consensus 16 lRACl~C~lI~t~~qF~~~--GCpNC~~~l~m~g~~d~v~dcTS-~~F~G~Ia 65 (120) T 3h7h_A 16 LRACLLCSLVKTIDQFEYD--GCDNCDAYLQMKGNREMVYDCTS-SSFDGIIA 65 (120) T ss_dssp EEEETTTCBEEEHHHHHHH--CCTTTHHHHCCTTCHHHHHHHEE-SCEEEEEE T ss_pred CHHHHCCCCEECHHHHHHC--CCCCCHHHHCCCCCHHHHEECCC-CCCCEEEE T ss_conf 4355208713049999564--99870777427887536104346-66333799 No 231 >1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Probab=33.55 E-value=18 Score=15.75 Aligned_cols=37 Identities=14% Similarity=0.077 Sum_probs=22.7 Q ss_pred EECCCCCCEEEHH-HHHH------------HCCCCCCCCCCEECCHHHHH Q ss_conf 0566768722178-8986------------33838899896243799999 Q gi|254780820|r 27 VKCPETGAMVYHK-DLKE------------NQWVISSSDFHMKIPAKERL 63 (284) Q Consensus 27 ~kCp~C~~~i~~~-~l~~------------n~~VCp~C~~H~rl~areRi 63 (284) .+|+.|+.....+ .|.. .-|.|+.|+.-|.-...-+. T Consensus 16 ~~C~~C~k~F~~~~~L~~H~~~~h~~~~~~~~~~C~~C~k~F~~~~~L~~ 65 (86) T 1x6h_A 16 YACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMAR 65 (86) T ss_dssp EECSSSSCEESSHHHHHHHHHHTTCSSCCCCCEECSSSCCEESCHHHHHH T ss_pred EECCCCCCEECCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEECCHHHHHH T ss_conf 05899988516626588887886377656778716887966267999999 No 232 >3g7n_A Lipase; hydrolase fold, hydrolase; HET: 1PE; 1.30A {Penicillium expansum} Probab=33.32 E-value=4.7 Score=19.96 Aligned_cols=69 Identities=12% Similarity=0.139 Sum_probs=34.3 Q ss_pred CCCCCCCCHHHHHHH--HHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCCEEEEECC---CEEECCCHHH Q ss_conf 887765212467777--889999999986299889985676420111120146852555314---2110232788 Q gi|254780820|r 165 GGARMQEGILSLMQL--PRTTIAINMLKDAGLPYIVVLTNPTTGGVTASYAMLGDIHLAEPG---AEIGFAGRRV 234 (284) Q Consensus 165 GGaRMqEG~~sL~qM--akt~~a~~~l~~~~lP~I~vl~~pt~GGv~AS~a~lgDiiiaep~---a~igFaG~rV 234 (284) .+.+++.|......- .++...++++.+..--+=.++|+-..||..|+.+.+ ++...-|. ..+.|+.||| T Consensus 91 ~~~~VH~GF~~~~~~~~~~i~~~v~~~~~~~p~~~i~vTGHSLGGAlA~L~a~-~l~~~~~~~~i~~~tFG~Prv 164 (258) T 3g7n_A 91 SDVKIMRGVHRPWSAVHDTIITEVKALIAKYPDYTLEAVGHSLGGALTSIAHV-ALAQNFPDKSLVSNALNAFPI 164 (258) T ss_dssp TTCCEEHHHHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEEETHHHHHHHHHHH-HHHHHCTTSCEEEEEESCCCC T ss_pred CCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHH-HHHHHCCCCCEEEEEECCCCC T ss_conf 87587488999999999999999999998747965998546508899999999-999838998669999589986 No 233 >1yqw_A Periplasmic [NIFE] hydrogenase small subunit; NI-Fe hydrogenase unready state, oxidoreductase; 1.83A {Desulfovibrio fructosovorans} PDB: 3cur_A 3cus_A 3h3x_A 1yrq_A 1frf_S Probab=33.06 E-value=20 Score=15.33 Aligned_cols=16 Identities=31% Similarity=0.343 Sum_probs=7.5 Q ss_pred CEEEEECCCCCCEEEE Q ss_conf 8899856764201111 Q gi|254780820|r 195 PYIVVLTNPTTGGVTA 210 (284) Q Consensus 195 P~I~vl~~pt~GGv~A 210 (284) -.|++-+=.|+||+.| T Consensus 107 ~vVA~GtCA~~GGI~a 122 (264) T 1yqw_A 107 GIICIGTCSAYGGVQK 122 (264) T ss_dssp CEEEESHHHHHCCGGG T ss_pred EEEEEECCCCCCCCCC T ss_conf 7999723111388545 No 234 >2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, alternative splicing, bromodomain, chromatin regulator, coiled coil, cytoplasm; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 2fui_A 2fuu_A* Probab=32.90 E-value=10 Score=17.56 Aligned_cols=32 Identities=6% Similarity=0.240 Sum_probs=22.9 Q ss_pred CCCCCCEECCCCCCEEEHHHH-----HH---HCCCCCCCC Q ss_conf 774601056676872217889-----86---338388998 Q gi|254780820|r 21 IPENLWVKCPETGAMVYHKDL-----KE---NQWVISSSD 52 (284) Q Consensus 21 ip~~lW~kCp~C~~~i~~~~l-----~~---n~~VCp~C~ 52 (284) -+++.|+.|..|....+..=+ +. -.|+||.|. T Consensus 18 d~~~~~i~Cd~C~~~~H~~C~~~~~~~~~~~~~~~C~~C~ 57 (174) T 2ri7_A 18 DESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQ 57 (174) T ss_dssp CTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHH T ss_pred CCCCCEEECCCCCCEECCCCCCCCCCCCCCCCEEECCCCC T ss_conf 9996177799998750433689871124666678882036 No 235 >1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ... Probab=32.90 E-value=4.9 Score=19.86 Aligned_cols=33 Identities=18% Similarity=0.308 Sum_probs=23.3 Q ss_pred CEECCCCCCEEEHHHHHHHCCCCCCCCCCEECCH Q ss_conf 1056676872217889863383889989624379 Q gi|254780820|r 26 WVKCPETGAMVYHKDLKENQWVISSSDFHMKIPA 59 (284) Q Consensus 26 W~kCp~C~~~i~~~~l~~n~~VCp~C~~H~rl~a 59 (284) =.+||.|+..-.++ ..--.|.|.+|++-|-=.| T Consensus 27 ky~Cp~Cgk~~vkR-~a~GIW~C~kC~~~~AGGA 59 (83) T 1vq8_Z 27 DHACPNCGEDRVDR-QGTGIWQCSYCDYKFTGGS 59 (83) T ss_dssp CEECSSSCCEEEEE-EETTEEEETTTCCEEECCS T ss_pred CCCCCCCCCCEEEE-EEEEEEECCCCCCEEECCC T ss_conf 97198999976789-9988978378999885686 No 236 >1u5k_A Hypothetical protein; OBD-fold, Zn-binding, recombination,replication; 2.00A {Deinococcus radiodurans R1} SCOP: b.40.4.13 g.45.1.2 PDB: 1w3s_A 2v1c_C Probab=32.64 E-value=8.5 Score=18.10 Aligned_cols=20 Identities=5% Similarity=0.121 Sum_probs=14.2 Q ss_pred ECHHHHHHHHHHHHHHHHCC Q ss_conf 35899999999999997237 Q gi|254780820|r 263 VHRHDIPEVVSSLCKILTKS 282 (284) Q Consensus 263 v~r~~l~~~i~~ll~il~~~ 282 (284) -.++++...+-..++.|+.. T Consensus 209 ~~~~~l~~~l~~yl~~Hlg~ 228 (244) T 1u5k_A 209 ADRPALWRALEKFVTVQVGG 228 (244) T ss_dssp GGHHHHHHHHHHHHHHHSCS T ss_pred HHHHHHHHHHHHHHHHHHCC T ss_conf 99999999999999999688 No 237 >1kid_A Groel (HSP60 class); chaperone, cell division, ATP-binding, phosphorylation; 1.70A {Escherichia coli} SCOP: c.8.5.1 PDB: 1fya_A 1fy9_A 1la1_A 1jon_A 1dk7_A 1dkd_A Probab=32.35 E-value=23 Score=14.88 Aligned_cols=53 Identities=17% Similarity=0.296 Sum_probs=34.9 Q ss_pred HHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCC Q ss_conf 999999999998628968999768887765212467777889999999986299889985676420 Q gi|254780820|r 141 GEAIVKSCERAIAEKCPLVMFTASGGARMQEGILSLMQLPRTTIAINMLKDAGLPYIVVLTNPTTG 206 (284) Q Consensus 141 geki~~a~e~A~~~~~PlI~~~~SGGaRMqEG~~sL~qMakt~~a~~~l~~~~lP~I~vl~~pt~G 206 (284) -+.|..+.|.+.+++.||++++..=. +-+++ +..++++ .|..-+++..-|-+| T Consensus 57 ~~~ilp~Le~~~~~~rPLlIIA~di~----~eaL~-------~Lv~N~~--kg~l~v~aVkaPgfG 109 (203) T 1kid_A 57 IREMLPVLEAVAKAGKPLLIIAEDVE----GEALA-------TLVVNTM--RGIVKVAAVKAPGFG 109 (203) T ss_dssp HHHHHHHHHHHHHHTCCEEEEESEEC----HHHHH-------HHHHHHH--TTSCCEEEEECCSCH T ss_pred HHHHHHHHHHHHHCCCCEEEEECCCC----HHHHH-------HHHHHHC--CCCCCEEEECCCCCC T ss_conf 87889999999854996899954106----88999-------9998640--587532464388877 No 238 >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} Probab=32.35 E-value=7.7 Score=18.40 Aligned_cols=26 Identities=15% Similarity=0.351 Sum_probs=16.9 Q ss_pred EECCCCCCEEEHHHHHHHCC-------------CCCCCC Q ss_conf 05667687221788986338-------------388998 Q gi|254780820|r 27 VKCPETGAMVYHKDLKENQW-------------VISSSD 52 (284) Q Consensus 27 ~kCp~C~~~i~~~~l~~n~~-------------VCp~C~ 52 (284) .||++||..+...+-.+.-| +|--|- T Consensus 5 ~kC~GCGa~lQ~~d~~~pGY~p~~~~~~~~~~~~C~RC~ 43 (369) T 3ec1_A 5 LRCIGCGAAIQFENPKNAGYAPKSVLEKDAEEVICQRCF 43 (369) T ss_dssp --------------------------------------- T ss_pred CEECCCCCEEECCCCCCCCCCCHHHHCCCCCCEEEHHHH T ss_conf 885899833088899989887668944688737856464 No 239 >1zvf_A 3-hydroxyanthranilate 3,4-dioxygenase; jellyroll beta-barrel, oxidoreductase; 2.41A {Saccharomyces cerevisiae} SCOP: b.82.1.20 Probab=32.33 E-value=5.2 Score=19.65 Aligned_cols=36 Identities=8% Similarity=0.044 Sum_probs=23.3 Q ss_pred CCCCCCEECCCCCCEEEHHHH------------------HHHCCCCCCCCCCEE Q ss_conf 774601056676872217889------------------863383889989624 Q gi|254780820|r 21 IPENLWVKCPETGAMVYHKDL------------------KENQWVISSSDFHMK 56 (284) Q Consensus 21 ip~~lW~kCp~C~~~i~~~~l------------------~~n~~VCp~C~~H~r 56 (284) .-|++--=|++|+..+|..++ .+....|++||+-+. T Consensus 119 ~~D~l~WyC~~C~~~l~e~~F~~~dI~tql~pv~~~F~~see~RTC~~CGtv~~ 172 (176) T 1zvf_A 119 ENDKIRWYCSHCRQVVHESELQMLDLGTQVKEAILDFENDVEKRTCFHCKTLNY 172 (176) T ss_dssp SCCEEEEECTTTCCEEEEEECCSSSTTHHHHHHHHHHHTCHHHHBCTTTCCBCC T ss_pred CCCCEEEECCCCCCEEEEEEEEEECHHHHHHHHHHHHHCCHHCCCCCCCCCCCC T ss_conf 842358960798977999999985558877999999864742061866678688 No 240 >2gru_A 2-deoxy-scyllo-inosose synthase; aminoglycoside, 2-deoxystreptamine, dehydroquinate synthase, lyase; HET: NAD EXO CAK; 2.15A {Bacillus circulans} PDB: 2d2x_A* Probab=32.32 E-value=23 Score=14.87 Aligned_cols=51 Identities=22% Similarity=0.238 Sum_probs=25.1 Q ss_pred HHHHHHHHHHHHHCCC--EEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCC Q ss_conf 9999999999862896--8999768887765212467777889999999986299889985676 Q gi|254780820|r 142 EAIVKSCERAIAEKCP--LVMFTASGGARMQEGILSLMQLPRTTIAINMLKDAGLPYIVVLTNP 203 (284) Q Consensus 142 eki~~a~e~A~~~~~P--lI~~~~SGGaRMqEG~~sL~qMakt~~a~~~l~~~~lP~I~vl~~p 203 (284) +-+.+.++.+.+.++. =+++.=+|| ...-+++-.++. + ..|+|||.|-|.+ T Consensus 78 ~~~~~i~~~l~~~~~~r~~~iiaiGGG--------~v~D~agf~As~--~-~RGi~~i~iPTtl 130 (368) T 2gru_A 78 STVTNLQERAIALGANRRTAIVAVGGG--------LTGNVAGVAAGM--M-FRGIALIHVPTTF 130 (368) T ss_dssp HHHHHHHHHHHHTTCCTTEEEEEEESH--------HHHHHHHHHHHH--B-TTCCEEEEEECSH T ss_pred HHHHHHHHHHHHCCCCCCCEEEEECCC--------HHHHHHHHHHHH--H-HCCCCEEECCCCH T ss_conf 999999999986599977538996593--------155489999999--6-1898379578714 No 241 >2h9a_A Carbon monoxide dehydrogenase corrinoid/iron- sulfur protein, gamma subunit; heterodimer, beta-alpha-barrels, oxidoreductase; HET: B12; 1.90A {Carboxydothermus hydrogenoformans} Probab=31.64 E-value=20 Score=15.28 Aligned_cols=37 Identities=22% Similarity=0.164 Sum_probs=16.0 Q ss_pred EECCCCCCE---EEHHHH---HHHCCCCCCCCCCEECCHHHHHHHHC Q ss_conf 056676872---217889---86338388998962437999999845 Q gi|254780820|r 27 VKCPETGAM---VYHKDL---KENQWVISSSDFHMKIPAKERLKFLF 67 (284) Q Consensus 27 ~kCp~C~~~---i~~~~l---~~n~~VCp~C~~H~rl~areRi~~l~ 67 (284) ++|-.||.. -|...| +....-||+-.- .+++.++-+. T Consensus 15 tNC~eCG~ptCmAFA~kl~~g~~~~~~CP~~~~----eake~L~~a~ 57 (445) T 2h9a_A 15 KNCKECGQPTCLAFAMQIAAGKAGLDACPYVSD----EAKELLESAS 57 (445) T ss_dssp ----------------------------------------------- T ss_pred CCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCH----HHHHHHHHCC T ss_conf 241103883189999999708876677999889----9999998547 No 242 >2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C Probab=31.43 E-value=24 Score=14.77 Aligned_cols=33 Identities=15% Similarity=0.190 Sum_probs=18.8 Q ss_pred CCCCCCCCCEECCCCCCEEEHHHHHHHCCCCCCCCCCEECCH Q ss_conf 224774601056676872217889863383889989624379 Q gi|254780820|r 18 RRAIPENLWVKCPETGAMVYHKDLKENQWVISSSDFHMKIPA 59 (284) Q Consensus 18 kk~ip~~lW~kCp~C~~~i~~~~l~~n~~VCp~C~~H~rl~a 59 (284) +.++|+. ..||=|.+++..+ |...|||.|--.+ T Consensus 100 ~~eiP~~--~~C~i~~~~m~dP-------v~~~~ghty~~~~ 132 (179) T 2f42_A 100 KREIPDY--LCGKISFELMREP-------CITPSGITYDRKD 132 (179) T ss_dssp CCCCCGG--GBCTTTCSBCSSE-------EECTTSCEEEHHH T ss_pred CCCCCHH--HCCCCCCCCCCCC-------EECCCCCEECHHH T ss_conf 5699534--1774658647684-------1469979766999 No 243 >1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP ribose,, gene regulation; HET: ALY OAD; 1.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A* 1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A* Probab=30.54 E-value=25 Score=14.67 Aligned_cols=23 Identities=22% Similarity=0.403 Sum_probs=12.7 Q ss_pred HHHCCCC-CCEEEEEEEEECEEEE Q ss_conf 6421667-7169998787041499 Q gi|254780820|r 101 RSKTGLI-DSIVSAVGNVRDFKLV 123 (284) Q Consensus 101 ~~kTg~~-davv~G~G~I~G~~vv 123 (284) ..+.|.+ +-|+--+|.+.-..|. T Consensus 117 h~kAG~~~~~vielHGsl~~~~C~ 140 (289) T 1q1a_A 117 ERQAGVKDDLIIEAHGSFAHCHCI 140 (289) T ss_dssp HHHTTCCGGGEEETTEEEEEEEET T ss_pred HHHCCCCCCCCEEEECCCCCCEEC T ss_conf 876799723320143141321658 No 244 >1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Probab=30.08 E-value=24 Score=14.77 Aligned_cols=36 Identities=11% Similarity=0.100 Sum_probs=22.2 Q ss_pred EECCCCCCEEEHHHH---------HHHCCCCCCCCCCEECCHHHH Q ss_conf 056676872217889---------863383889989624379999 Q gi|254780820|r 27 VKCPETGAMVYHKDL---------KENQWVISSSDFHMKIPAKER 62 (284) Q Consensus 27 ~kCp~C~~~i~~~~l---------~~n~~VCp~C~~H~rl~areR 62 (284) .+|+.|+.....+.- .+..|.|+.|++-|.....-+ T Consensus 15 y~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~ 59 (72) T 1x6e_A 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLI 59 (72) T ss_dssp EECSSSCCEESSHHHHHHHHHGGGCSCCEECSSSCCEESSHHHHH T ss_pred CCCCCCCCEECCHHHHHHHHHHHCCCCCEECCCCCCCCCCHHHHH T ss_conf 179999887398999999998736884638898989608889999 No 245 >3mhs_E SAGA-associated factor 73; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_E 3m99_D Probab=29.94 E-value=8.6 Score=18.04 Aligned_cols=16 Identities=13% Similarity=0.075 Sum_probs=9.7 Q ss_pred HCCCCCCCCCCEECCH Q ss_conf 3383889989624379 Q gi|254780820|r 44 NQWVISSSDFHMKIPA 59 (284) Q Consensus 44 n~~VCp~C~~H~rl~a 59 (284) +|+||..||...-++| T Consensus 74 ~YRvC~~CGkPi~lsA 89 (96) T 3mhs_E 74 QYRVCEKCGKPLALTA 89 (96) T ss_dssp CCEEETTTCCEECGGG T ss_pred CEEHHCCCCCCCHHHH T ss_conf 4200024687011999 No 246 >2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis} Probab=29.85 E-value=0.93 Score=25.21 Aligned_cols=111 Identities=14% Similarity=0.193 Sum_probs=50.2 Q ss_pred HCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEEC--CCC---CEEEEECC---- Q ss_conf 289689997688877652124677778899999999862998899856764201111201--468---52555314---- Q gi|254780820|r 154 EKCPLVMFTASGGARMQEGILSLMQLPRTTIAINMLKDAGLPYIVVLTNPTTGGVTASYA--MLG---DIHLAEPG---- 224 (284) Q Consensus 154 ~~~PlI~~~~SGGaRMqEG~~sL~qMakt~~a~~~l~~~~lP~I~vl~~pt~GGv~AS~a--~lg---Diiiaep~---- 224 (284) ..-|+|+++.=||.-|. +- ++......++|.+.|+.|.-.+|.....- ... +-.+..|. T Consensus 471 ~~r~vv~i~GDGsf~m~--~~----------eL~Ta~r~~lpi~ivV~NN~gygi~~~l~~~~~~~~~~~~~~~~~~~df 538 (604) T 2x7j_A 471 TKAPVTLVIGDLSFYHD--LN----------GLLAAKKLGIPLTVILVNNDGGGIFSFLPQASEKTHFEDLFGTPTGLDF 538 (604) T ss_dssp HTSCEEEEEEHHHHHHT--GG----------GGHHHHHHCCCEEEEEEECSSCGGGGGSGGGSCHHHHHHHTTCCCCCCT T ss_pred CCCCEEEEECCHHHHCC--HH----------HHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCCCCCCEECCCCCCCH T ss_conf 79974999885476337--89----------9999998395938999979986587445654235751231078999999 Q ss_pred ----CEEECCCHHHHHHHHCCCCCCCCHHHHHHHHC---CCCCEEECHHHHHHHHHHHHHHHHCC Q ss_conf ----21102327887876367788720215999968---98353735899999999999997237 Q gi|254780820|r 225 ----AEIGFAGRRVIEQTVREKLPDGFQRSEYLVEH---GMIDRIVHRHDIPEVVSSLCKILTKS 282 (284) Q Consensus 225 ----a~igFaG~rVi~~t~~~~lp~~fqtae~l~~~---G~iD~iv~r~~l~~~i~~ll~il~~~ 282 (284) .-.|+.|-|| +.-++|.+-+..+ +++ =+||.+++|++.....-.+++-..|+ T Consensus 539 ~~lA~a~G~~~~~v---~~~~eL~~al~~a---~~~~gp~lIeV~~d~~~~~~~~~~~~~~~~~~ 597 (604) T 2x7j_A 539 KHAAALYGGTYSCP---ASWDEFKTAYAPQ---ADKPGLHLIEIKTDRQSRVQLHRDMLNEAVRE 597 (604) T ss_dssp HHHHHHTTCEEECC---SSHHHHHHHCCCC---CSSCCEEEEEEECCHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHCCCEEEEE---CCHHHHHHHHHHH---HHCCCCEEEEEEECHHHHHHHHHHHHHHHHHH T ss_conf 99999789979996---9999999999999---81899199999978788499999999999999 No 247 >1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A* Probab=29.65 E-value=22 Score=14.98 Aligned_cols=62 Identities=19% Similarity=0.251 Sum_probs=35.8 Q ss_pred EECHHHCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCC Q ss_conf 83303185357789999999999998628968999768887765212467777889999999986299889985676420 Q gi|254780820|r 127 HEFSFIGGSIGIAAGEAIVKSCERAIAEKCPLVMFTASGGARMQEGILSLMQLPRTTIAINMLKDAGLPYIVVLTNPTTG 206 (284) Q Consensus 127 ~df~F~GGSmG~~~geki~~a~e~A~~~~~PlI~~~~SGGaRMqEG~~sL~qMakt~~a~~~l~~~~lP~I~vl~~pt~G 206 (284) .-+.-||++++.+.|-++ ...+.|+|+++.-||.-|.-. +|......++|.+.|+.|.-.+ T Consensus 423 ~g~g~mG~~l~aAiGaa~-------a~p~~~Vv~i~GDgsf~~~~~------------eL~ta~~~~lpi~iVV~NN~g~ 483 (590) T 1ybh_A 423 GGLGAMGFGLPAAIGASV-------ANPDAIVVDIDGDGSFIMNVQ------------ELATIRVENLPVKVLLLNNQHL 483 (590) T ss_dssp CSSCCTTCHHHHHHHHHH-------HCTTSCEEEEEEHHHHHHTTT------------HHHHHHHTTCCEEEEEEECSBC T ss_pred CHHHHHHHHHHHHHHHHH-------HCCCCEEEEEECCCHHHCCHH------------HHHHHHHHCCCEEEEEEECCCC T ss_conf 705668999999999998-------689985999947804305689------------9999999687929999969987 Q ss_pred E Q ss_conf 1 Q gi|254780820|r 207 G 207 (284) Q Consensus 207 G 207 (284) | T Consensus 484 g 484 (590) T 1ybh_A 484 G 484 (590) T ss_dssp H T ss_pred C T ss_conf 2 No 248 >3glr_A NAD-dependent deacetylase sirtuin-3, mitochondrial; NAD dependent deacetylase, sirtuin, substrate peptide complex, hydrolase, metal-binding; HET: ALY; 1.80A {Homo sapiens} PDB: 3gls_A 3glt_A* 3glu_A Probab=29.39 E-value=23 Score=14.93 Aligned_cols=24 Identities=17% Similarity=0.230 Sum_probs=13.4 Q ss_pred HHHHCCC-CCCEEEEEEEEECEEEE Q ss_conf 6642166-77169998787041499 Q gi|254780820|r 100 NRSKTGL-IDSIVSAVGNVRDFKLV 123 (284) Q Consensus 100 a~~kTg~-~davv~G~G~I~G~~vv 123 (284) -..+.|. .+-|+-.+|.+.-..|. T Consensus 119 Lh~~AG~~~~~vielHG~~~~~~C~ 143 (285) T 3glr_A 119 LERVSGIPASKLVEAHGTFASATCT 143 (285) T ss_dssp HHHHTTCCGGGEEETTEEEEEEEET T ss_pred HHHHCCCCHHHEEEECCCEEEEEEC T ss_conf 5766599634414421650056858 No 249 >1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Probab=29.39 E-value=17 Score=15.80 Aligned_cols=37 Identities=22% Similarity=0.328 Sum_probs=23.9 Q ss_pred EECCCCCCEEEHHH-HH--------HHCCCCCCCCCCEECCHHHHH Q ss_conf 05667687221788-98--------633838899896243799999 Q gi|254780820|r 27 VKCPETGAMVYHKD-LK--------ENQWVISSSDFHMKIPAKERL 63 (284) Q Consensus 27 ~kCp~C~~~i~~~~-l~--------~n~~VCp~C~~H~rl~areRi 63 (284) .+|+.|+.....+. |. +.-|.|+.|++-|.-...-+. T Consensus 10 y~C~~C~~~f~~~~~L~~H~~~H~~~kpy~C~~C~~~f~~~~~L~~ 55 (70) T 1x5w_A 10 EKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSK 55 (70) T ss_dssp EECSSSSCEESSHHHHHHHHGGGCCSCSEECSSSSCEESSHHHHHH T ss_pred EECCCCCCEECCHHHHHHHHHHHCCCCCEECCCCCCEECCHHHHHH T ss_conf 0189998861989999999998579978278977887488889999 No 250 >2i13_A AART; DNA binding, zinc finger, DNA binding protein/DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Probab=29.21 E-value=21 Score=15.16 Aligned_cols=34 Identities=18% Similarity=0.279 Sum_probs=17.3 Q ss_pred EECCCCCCEE-EHHHHHH--------HCCCCCCCCCCEECCHH Q ss_conf 0566768722-1788986--------33838899896243799 Q gi|254780820|r 27 VKCPETGAMV-YHKDLKE--------NQWVISSSDFHMKIPAK 60 (284) Q Consensus 27 ~kCp~C~~~i-~~~~l~~--------n~~VCp~C~~H~rl~ar 60 (284) .+|+.|+... ....|.. ..+.|..|++-|.-... T Consensus 22 f~C~~C~~~f~~~~~L~~H~~~h~~~~~~~c~~C~~~f~~~~~ 64 (190) T 2i13_A 22 YACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKD 64 (190) T ss_dssp ---------CCSSHHHHHGGGCC---CCEECTTTCCEESSHHH T ss_pred EECCCCCCCCCCHHHHHHHHHHHCCCCCEECCCCCCCCCCHHH T ss_conf 3699998885989999999887479987127887865377677 No 251 >1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4 Probab=29.18 E-value=7.7 Score=18.40 Aligned_cols=29 Identities=17% Similarity=0.077 Sum_probs=11.5 Q ss_pred EECCCCCCEEEHHHHHHHCCCCCCCCCCE Q ss_conf 05667687221788986338388998962 Q gi|254780820|r 27 VKCPETGAMVYHKDLKENQWVISSSDFHM 55 (284) Q Consensus 27 ~kCp~C~~~i~~~~l~~n~~VCp~C~~H~ 55 (284) +|||.|+...--=.-...--.|..|+.-+ T Consensus 8 VkCp~C~n~qiVFShA~t~V~C~~Cgt~L 36 (66) T 1qxf_A 8 VKCPDCEHEQVIFDHPSTIVKCIICGRTV 36 (66) T ss_dssp EECTTTCCEEEEESSCSSCEECSSSCCEE T ss_pred EECCCCCCEEEEEECCCCEEECCCCCCEE T ss_conf 49999997157981698168851228777 No 252 >2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A* Probab=28.84 E-value=26 Score=14.47 Aligned_cols=32 Identities=9% Similarity=0.237 Sum_probs=20.9 Q ss_pred CCCCCCEECC-CCCCEEE-------HHHHHHHCCCCCCCC Q ss_conf 7746010566-7687221-------788986338388998 Q gi|254780820|r 21 IPENLWVKCP-ETGAMVY-------HKDLKENQWVISSSD 52 (284) Q Consensus 21 ip~~lW~kCp-~C~~~i~-------~~~l~~n~~VCp~C~ 52 (284) -++..|+.|. .|..=.+ ..+.....|+||.|. T Consensus 13 ~~~~~mI~Cd~~C~~W~H~~Cvg~~~~~~~~~~~~C~~Cs 52 (52) T 2kgg_A 13 KDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52) T ss_dssp CTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC- T ss_pred CCCCCEEECCCCCCCEECCCCCCCCHHCCCCCCEECCCCC T ss_conf 9998996769988781984189958101899738898897 No 253 >2ory_A Lipase; alpha/beta hydrolase; 2.20A {Photobacterium SP} Probab=28.71 E-value=5 Score=19.81 Aligned_cols=16 Identities=25% Similarity=0.428 Sum_probs=7.5 Q ss_pred EEECCCCCCEEEEEEC Q ss_conf 9856764201111201 Q gi|254780820|r 198 VVLTNPTTGGVTASYA 213 (284) Q Consensus 198 ~vl~~pt~GGv~AS~a 213 (284) .++|+-..||..|+.+ T Consensus 168 I~vTGHSLGGALAtL~ 183 (346) T 2ory_A 168 ICVTGHSKGGALSSTL 183 (346) T ss_dssp EEEEEETHHHHHHHHH T ss_pred EEEEECCHHHHHHHHH T ss_conf 9998156688999999 No 254 >1wui_S Periplasmic [NIFE] hydrogenase small subunit; high resolution [NIFE]hydrogenase, oxidoreductase, NI-A state, unready state; HET: NFC; 1.04A {Desulfovibrio vulgaris str} SCOP: e.19.1.1 PDB: 1h2r_S 1ubj_S 1ubh_S 1ubl_S 1ubm_S 1ubo_S 1ubr_S 1ubt_S 1ubu_S 1wuh_S* 1ubk_S* 1wuj_S 1wuk_S 1wul_S 1e3d_A* Probab=28.57 E-value=27 Score=14.44 Aligned_cols=25 Identities=28% Similarity=0.198 Sum_probs=10.7 Q ss_pred HHHHHHCCCCEEEEECCCCCCEEEE Q ss_conf 9999862998899856764201111 Q gi|254780820|r 186 INMLKDAGLPYIVVLTNPTTGGVTA 210 (284) Q Consensus 186 ~~~l~~~~lP~I~vl~~pt~GGv~A 210 (284) +.+++++---.|++-+=.|+||+.| T Consensus 98 ~~~~~~~ak~vVA~GtCA~~GGI~a 122 (267) T 1wui_S 98 CSRILPKAQAVIAYGTCATFGGVQA 122 (267) T ss_dssp HHHHGGGSSEEEEESHHHHHCCGGG T ss_pred HHHHHHCCCEEEEECCCCCCCCCCC T ss_conf 9998325988999402002488645 No 255 >1m2k_A Silent information regulator 2; protein-ligand complex, gene regulation; HET: APR; 1.47A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1m2g_A* 1m2h_A* 1m2j_A* 1m2n_A* 1ici_A* Probab=28.54 E-value=13 Score=16.80 Aligned_cols=16 Identities=25% Similarity=0.250 Sum_probs=9.1 Q ss_pred HHCCCCEEEEECCCCC Q ss_conf 8629988998567642 Q gi|254780820|r 190 KDAGLPYIVVLTNPTT 205 (284) Q Consensus 190 ~~~~lP~I~vl~~pt~ 205 (284) ++.|.|.|.|--+||- T Consensus 201 ~~~ga~~i~IN~~~t~ 216 (249) T 1m2k_A 201 KQRGGAIIEINPDETP 216 (249) T ss_dssp HHTTCEEEEECSSCCT T ss_pred HHCCCEEEEECCCCCC T ss_conf 9759859998799989 No 256 >2qjw_A Uncharacterized protein XCC1541; putative hydrolase of the alpha/beta superfamily, structural genomics; HET: MSE TLA P6G; 1.35A {Xanthomonas campestris PV} Probab=28.28 E-value=8.3 Score=18.16 Aligned_cols=131 Identities=12% Similarity=0.034 Sum_probs=56.8 Q ss_pred EEEEEEEEECHHHCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCC-----CCCCCCCHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 1499999833031853577899999999999986289689997688-----87765212467777889999999986299 Q gi|254780820|r 120 FKLVAVVHEFSFIGGSIGIAAGEAIVKSCERAIAEKCPLVMFTASG-----GARMQEGILSLMQLPRTTIAINMLKDAGL 194 (284) Q Consensus 120 ~~vvv~~~df~F~GGSmG~~~geki~~a~e~A~~~~~PlI~~~~SG-----GaRMqEG~~sL~qMakt~~a~~~l~~~~l 194 (284) +..||.+. .|.+|..+. .+....+.+.+.+..++.+.-.| |........ ..+.....++..+.+. - T Consensus 4 ~~~Vv~~H--G~~~~~~~~----~~~~la~~l~~~G~~v~~~d~~g~g~s~~~~~~~~~~--~~v~~~~~~~~~~~~~-~ 74 (176) T 2qjw_A 4 RGHCILAH--GFESGPDAL----KVTALAEVAERLGWTHERPDFTDLDARRDLGQLGDVR--GRLQRLLEIARAATEK-G 74 (176) T ss_dssp SCEEEEEC--CTTCCTTSH----HHHHHHHHHHHTTCEEECCCCHHHHTCGGGCTTCCHH--HHHHHHHHHHHHHHTT-S T ss_pred CCEEEEEC--CCCCCCCCH----HHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCHH--HHHHHHHHHHHHCCCC-C T ss_conf 88899989--988897747----9999999999789989993578889999988779999--9999999999964889-9 Q ss_pred CEEEEECCCCCCEEEEEECCCCCEEEEECCC-EEECCCHHHHHHHHCCCCCCCCHHHHHHHHCCCCCEEECHHHHHH Q ss_conf 8899856764201111201468525553142-110232788787636778872021599996898353735899999 Q gi|254780820|r 195 PYIVVLTNPTTGGVTASYAMLGDIHLAEPGA-EIGFAGRRVIEQTVREKLPDGFQRSEYLVEHGMIDRIVHRHDIPE 270 (284) Q Consensus 195 P~I~vl~~pt~GGv~AS~a~lgDiiiaep~a-~igFaG~rVi~~t~~~~lp~~fqtae~l~~~G~iD~iv~r~~l~~ 270 (284) | |. +.+-++||..|.....-. .+.+. .+..++. .....+...++...++=||--|.+++..+.+. T Consensus 75 ~-i~-l~G~S~Gg~~a~~~a~~~---~~~~~~~~~~~~~------~~~~~~~~~~~~p~l~v~G~~D~~v~~~~~~~ 140 (176) T 2qjw_A 75 P-VV-LAGSSLGSYIAAQVSLQV---PTRALFLMVPPTK------MGPLPALDAAAVPISIVHAWHDELIPAADVIA 140 (176) T ss_dssp C-EE-EEEETHHHHHHHHHHTTS---CCSEEEEESCCSC------BTTBCCCCCCSSCEEEEEETTCSSSCHHHHHH T ss_pred C-EE-EEEECCHHHHHHHHHHHC---CCCEEEEECCCCC------CCCHHHHCCCCCCEEEECCCCCCCCCHHHHHH T ss_conf 8-89-999682899999999736---7884999817656------76133201346746755378887649999999 No 257 >3fzq_A Putative hydrolase; YP_001086940.1, putative haloacid dehalogenase-like hydrolase, structural genomics; HET: MSE; 2.10A {Clostridium difficile 630} Probab=28.11 E-value=15 Score=16.20 Aligned_cols=11 Identities=18% Similarity=0.135 Sum_probs=4.8 Q ss_pred HHHHHHHCCCC Q ss_conf 15999968983 Q gi|254780820|r 249 RSEYLVEHGMI 259 (284) Q Consensus 249 tae~l~~~G~i 259 (284) -++++-+.|+| T Consensus 264 v~~~l~~~~li 274 (274) T 3fzq_A 264 IYKELKRRNII 274 (274) T ss_dssp HHHHHHHTTCC T ss_pred HHHHHHHHCCC T ss_conf 99999986889 No 258 >3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate synthase, structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824} Probab=28.00 E-value=25 Score=14.62 Aligned_cols=54 Identities=9% Similarity=0.110 Sum_probs=27.7 Q ss_pred CCCCCCEECCHHHHHHHHCCCCCCCCCCCCCCC---CHHCCCCCC---CCHHHHHHHHHHHCCC Q ss_conf 899896243799999984556542013345687---020186764---2035667766642166 Q gi|254780820|r 49 SSSDFHMKIPAKERLKFLFDNAKYCLLDQPQVC---QDPLKFRDN---KKYIDRLKENRSKTGL 106 (284) Q Consensus 49 p~C~~H~rl~areRi~~l~D~gsf~Ei~~~~~~---~DPL~F~d~---k~Y~drl~~a~~kTg~ 106 (284) +.+.|.+.+|.+ +.|.+|...++...+.. ...|=..|. +.|.+++.+.-++.|. T Consensus 3 ~~~~h~i~~P~~----i~~G~g~l~~l~~~l~~~g~~k~liVtd~~~~~~~~~~v~~~L~~~~i 62 (354) T 3ce9_A 3 KGISHRIAIPLI----LEVGNNKIYNIGQIIKKGNFKRVSLYFGEGIYELFGETIEKSIKSSNI 62 (354) T ss_dssp ---CCCCCCCSE----EEEESSCGGGHHHHHGGGTCSEEEEEEETTHHHHHHHHHHHHHHTTTC T ss_pred CCCEEEEECCCE----EEECCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHCCC T ss_conf 876288537976----898959899999999971989599998967889999999999987799 No 259 >3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B Probab=27.73 E-value=15 Score=16.31 Aligned_cols=34 Identities=12% Similarity=0.151 Sum_probs=24.4 Q ss_pred CEECCCCCCEEE--HH-HHHHHCCCCCCCCCCEECCH Q ss_conf 105667687221--78-89863383889989624379 Q gi|254780820|r 26 WVKCPETGAMVY--HK-DLKENQWVISSSDFHMKIPA 59 (284) Q Consensus 26 W~kCp~C~~~i~--~~-~l~~n~~VCp~C~~H~rl~a 59 (284) =..|.+|+..+- -+ +-..+.|+|+-|++...++. T Consensus 98 p~RC~~C~AylNpf~~~~~~~~~W~C~~C~~~N~~p~ 134 (770) T 3efo_B 98 PVRCNRCKAYMCPFMQFIEGGRRYQCGFCNCVNDVPP 134 (770) T ss_dssp SCBCTTTCCBSCTTCEEEGGGTEEECTTTCCEEECCG T ss_pred CCCCCCCCCEECCCEEEECCCCEEECCCCCCCCCCCH T ss_conf 9867687488887459967999998657998489986 No 260 >1muw_A Xylose isomerase; atomic resolution, disorder; 0.86A {Streptomyces olivochromogenes} SCOP: c.1.15.3 PDB: 1s5m_A* 1s5n_A* 2gyi_A* 1xyb_A* 1xyc_A* 1xya_A* 1xyl_A 1xym_A* 1dxi_A 3gnx_A* 1gw9_A* 1xib_A 1xic_A* 1xid_A* 1xie_A* 1xif_A* 1xig_A* 1xih_A* 1xii_A* 1xij_A ... Probab=27.67 E-value=27 Score=14.33 Aligned_cols=89 Identities=15% Similarity=0.134 Sum_probs=54.2 Q ss_pred CHHHHHHHHHHHCCCCCCEEEEEEEEECEEEEEEEEECHHHCCCCCH-------HHHHHHHHHHHHHHHHCCCEEEEECC Q ss_conf 03566776664216677169998787041499999833031853577-------89999999999998628968999768 Q gi|254780820|r 92 KYIDRLKENRSKTGLIDSIVSAVGNVRDFKLVAVVHEFSFIGGSIGI-------AAGEAIVKSCERAIAEKCPLVMFTAS 164 (284) Q Consensus 92 ~Y~drl~~a~~kTg~~davv~G~G~I~G~~vvv~~~df~F~GGSmG~-------~~geki~~a~e~A~~~~~PlI~~~~S 164 (284) .-.++++++.+.||+.-.. ++..+- +|.+|+-|++.+ ..-+.+.++++.|.+-+.+.++++.+ T Consensus 69 ~~~~~ik~~l~~~Gl~~~~--~T~nlf--------~~p~~~~Ga~TspD~~vR~~Ai~~vk~aidiAa~LGa~~vvlw~G 138 (386) T 1muw_A 69 SHIKRFRQALDATGMTVPM--ATTNLF--------THPVFKDGGFTANDRDVRRYALRKTIRNIDLAVELGAKTYVAWGG 138 (386) T ss_dssp HHHHHHHHHHHHHTCBCCE--EECCCS--------SSGGGTTCSTTCSSHHHHHHHHHHHHHHHHHHHHHTCSEEEECCT T ss_pred HHHHHHHHHHHHCCCCCCE--ECCCCC--------CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCC T ss_conf 9999999999963984213--035324--------685535787789599999999999999999999949984897389 Q ss_pred -CCCCCCCCH---HHHHHHHHHHHHHHHHH Q ss_conf -887765212---46777788999999998 Q gi|254780820|r 165 -GGARMQEGI---LSLMQLPRTTIAINMLK 190 (284) Q Consensus 165 -GGaRMqEG~---~sL~qMakt~~a~~~l~ 190 (284) -|..-.... ..+-+++.....+..+. T Consensus 139 ~eG~~~~~~~d~~~~~~~l~e~L~~v~dya 168 (386) T 1muw_A 139 REGAESGAAKDVRVALDRMKEAFDLLGEYV 168 (386) T ss_dssp TCEESSTTSCCHHHHHHHHHHHHHHHHHHH T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHH T ss_conf 777677665799999999999999999999 No 261 >2k5r_A Uncharacterized protein XF2673; solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Xylella fastidiosa TEMECULA1} Probab=27.57 E-value=12 Score=17.08 Aligned_cols=14 Identities=7% Similarity=0.164 Sum_probs=8.0 Q ss_pred HCCCCCCCCCCEEC Q ss_conf 33838899896243 Q gi|254780820|r 44 NQWVISSSDFHMKI 57 (284) Q Consensus 44 n~~VCp~C~~H~rl 57 (284) +--||+.|+.-|+| T Consensus 52 ~~Lic~~~~~~YPI 65 (97) T 2k5r_A 52 EALITRDRKQVFRI 65 (97) T ss_dssp EEEECTTSCEEEEE T ss_pred CEEECCCCCEEEEC T ss_conf 83874655877062 No 262 >3iv7_A Alcohol dehydrogenase IV; NP_602249.1, iron-containing alcohol dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum} Probab=27.43 E-value=28 Score=14.30 Aligned_cols=52 Identities=19% Similarity=0.275 Sum_probs=34.9 Q ss_pred HHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCC Q ss_conf 899999999999986289689997688877652124677778899999999862998899856764 Q gi|254780820|r 139 AAGEAIVKSCERAIAEKCPLVMFTASGGARMQEGILSLMQLPRTTIAINMLKDAGLPYIVVLTNPT 204 (284) Q Consensus 139 ~~geki~~a~e~A~~~~~PlI~~~~SGGaRMqEG~~sL~qMakt~~a~~~l~~~~lP~I~vl~~pt 204 (284) ..-|-+.++++.|.++++.+|+ .-+|| |.+-++|..+.. .++|.|+|-|-+. T Consensus 72 p~~~~v~~~~~~~~~~~~D~Ii-avGGG--------sviD~aK~ia~~-----~~~P~i~iPTtas 123 (364) T 3iv7_A 72 VPIEVAERARAVATDNEIDLLV-CVGGG--------STIGLAKAIAMT-----TALPIVAIPTTYA 123 (364) T ss_dssp CBHHHHHHHHHHHHHTTCCEEE-EEESH--------HHHHHHHHHHHH-----HCCCEEEEECSSS T ss_pred CCHHHHHHHHHHHHHCCCCEEE-EECCC--------HHHHHHHHHEEC-----CCCCEEEECCCCC T ss_conf 6999999999999865999899-94581--------675421421111-----6798788537666 No 263 >3ag6_A Pantothenate synthetase; ATP-dependent enzyme, ATP-binding, nucleotide-binding, pantothenate biosynthesis; HET: PAJ PG4; 1.85A {Staphylococcus aureus} PDB: 3ag5_A* 2x3f_A* Probab=27.39 E-value=28 Score=14.29 Aligned_cols=45 Identities=16% Similarity=0.341 Sum_probs=23.5 Q ss_pred HHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCE Q ss_conf 6289689997688877652124677778899999999862998899856764201 Q gi|254780820|r 153 AEKCPLVMFTASGGARMQEGILSLMQLPRTTIAINMLKDAGLPYIVVLTNPTTGG 207 (284) Q Consensus 153 ~~~~PlI~~~~SGGaRMqEG~~sL~qMakt~~a~~~l~~~~lP~I~vl~~pt~GG 207 (284) +.+.++-.+..-|. +|+|-+||+.-|+ +++..-.+|+..||+-=| T Consensus 20 ~~g~~igfVPTMGa--LH~GHlsLI~~A~--------~~~~~vvVSIFVNP~QF~ 64 (283) T 3ag6_A 20 RSGTTIGFIPTMGA--LHDGHLTMVRESV--------STNDITIVSVFVNPLQFG 64 (283) T ss_dssp HTTCCEEEEEECSS--CCHHHHHHHHHHH--------TTSSEEEEEECCCGGGCC T ss_pred HCCCEEEEECCCCC--HHHHHHHHHHHHH--------HHCCCEEEEEEECHHHCC T ss_conf 72991999858853--7499999999998--------738978999987702248 No 264 >3lpe_B DNA-directed RNA polymerase subunit E''; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} Probab=27.28 E-value=19 Score=15.57 Aligned_cols=19 Identities=5% Similarity=0.052 Sum_probs=13.8 Q ss_pred EECCCCCCEEEHHHHHHHCCCCCCCC Q ss_conf 05667687221788986338388998 Q gi|254780820|r 27 VKCPETGAMVYHKDLKENQWVISSSD 52 (284) Q Consensus 27 ~kCp~C~~~i~~~~l~~n~~VCp~C~ 52 (284) .-|-+|+-+... .+||+|+ T Consensus 2 kAC~~C~~i~~~-------~~Cp~C~ 20 (59) T 3lpe_B 2 RACLKCKYLTND-------EICPICH 20 (59) T ss_dssp EEETTTCBEESS-------SBCTTTC T ss_pred CCCCCCCCCCCC-------CCCCCCC T ss_conf 372319577178-------9896948 No 265 >3guz_A Pantothenate synthetase; pantothenate biosynthesis, substrate binding, competitive inhibition, rossmann fold; HET: PAF; 1.67A {Escherichia coli} Probab=27.03 E-value=28 Score=14.25 Aligned_cols=72 Identities=15% Similarity=0.220 Sum_probs=43.1 Q ss_pred HHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCC-----CCEEEE-ECC Q ss_conf 98628968999768887765212467777889999999986299889985676420111120146-----852555-314 Q gi|254780820|r 151 AIAEKCPLVMFTASGGARMQEGILSLMQLPRTTIAINMLKDAGLPYIVVLTNPTTGGVTASYAML-----GDIHLA-EPG 224 (284) Q Consensus 151 A~~~~~PlI~~~~SGGaRMqEG~~sL~qMakt~~a~~~l~~~~lP~I~vl~~pt~GGv~AS~a~l-----gDiiia-ep~ 224 (284) ..+++-.+-.+...|. +|||-+||+.-|+ +++..-.+|+..||+-=+....|..- .|+-+. +-+ T Consensus 17 ~r~~g~~IgfVPTMGa--LH~GHlsLI~~A~--------~~~d~vvVSIFVNP~QF~~~eD~~~YPr~~~~D~~~l~~~g 86 (176) T 3guz_A 17 LRMEGKRVALVPTMGN--LHDGHMKLVDEAK--------ARADVVAVSIFVNPMQFDRPEDLARYPRTLQEDCEKLNKRK 86 (176) T ss_dssp HHHTTCCEEEEEECSC--CCGGGHHHHHHHH--------HTCSEEEEEECCCGGGCSCHHHHHHSCCCHHHHHHHHHHTT T ss_pred HHHCCCEEEEECCCCC--HHHHHHHHHHHHH--------HHCCEEEEEEECCCHHCCCCCCCCCCCCCHHHHHHHHHHCC T ss_conf 9974994999838730--6599999999999--------75993899960370324666666549998077899999769 Q ss_pred CEEECCCH Q ss_conf 21102327 Q gi|254780820|r 225 AEIGFAGR 232 (284) Q Consensus 225 a~igFaG~ 232 (284) ..+-|+.+ T Consensus 87 vd~vf~P~ 94 (176) T 3guz_A 87 VDLVFAPS 94 (176) T ss_dssp CCEEECCC T ss_pred CCEEEECC T ss_conf 98999688 No 266 >3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} Probab=26.83 E-value=9.2 Score=17.85 Aligned_cols=32 Identities=13% Similarity=0.206 Sum_probs=22.2 Q ss_pred CCCEECCCCCCEEEHHHHHHHCCCCCCCCCCEE Q ss_conf 601056676872217889863383889989624 Q gi|254780820|r 24 NLWVKCPETGAMVYHKDLKENQWVISSSDFHMK 56 (284) Q Consensus 24 ~lW~kCp~C~~~i~~~~l~~n~~VCp~C~~H~r 56 (284) .-=.+||-|+..--++ ..--.|-|.+|++-|- T Consensus 24 ~~ky~CpfCgk~~vkR-~a~GIW~C~~C~~~~A 55 (72) T 3jyw_9 24 HARYDCSFCGKKTVKR-GAAGIWTCSCCKKTVA 55 (72) T ss_dssp HSCBCCSSCCSSCBSB-CSSSCBCCSSSCCCCC T ss_pred CCCCCCCCCCCCEEEE-EEEEEEECCCCCCEEE T ss_conf 5784099999977788-9888987389898885 No 267 >2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens} Probab=26.61 E-value=27 Score=14.42 Aligned_cols=38 Identities=13% Similarity=0.143 Sum_probs=26.1 Q ss_pred CCCCCCCCCCEECCCCCCEEEHHHHHHHCCCCCCCCCCEECCHHHH Q ss_conf 2224774601056676872217889863383889989624379999 Q gi|254780820|r 17 GRRAIPENLWVKCPETGAMVYHKDLKENQWVISSSDFHMKIPAKER 62 (284) Q Consensus 17 ~kk~ip~~lW~kCp~C~~~i~~~~l~~n~~VCp~C~~H~rl~areR 62 (284) ...++|+. ..||-|.+.+- +-.+++.|+|.|-...-++ T Consensus 8 ~~~~~~~~--~~C~IC~~~~~------~p~~~~~CgH~fc~~Ci~~ 45 (74) T 2yur_A 8 EDDPIPDE--LLCLICKDIMT------DAVVIPCCGNSYCDECIRT 45 (74) T ss_dssp CCCCSCGG--GSCSSSCCCCT------TCEECSSSCCEECTTHHHH T ss_pred CCCCCCCC--CCCCCCCHHHH------CCEEECCCCCEECHHHHHH T ss_conf 77889988--99966491750------9718488989999999999 No 268 >2zkr_2 60S ribosomal protein L37E; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} SCOP: i.1.1.1 Probab=26.48 E-value=27 Score=14.42 Aligned_cols=78 Identities=23% Similarity=0.454 Sum_probs=44.2 Q ss_pred CCCCCCCCCCCCCEECCCCCCEEEHHHHHHHCCCCCCCCCCEECCHHHHHHHHCCCCCCCCCCCCCCCCHHCCCCCCCCH Q ss_conf 45422247746010566768722178898633838899896243799999984556542013345687020186764203 Q gi|254780820|r 14 SVFGRRAIPENLWVKCPETGAMVYHKDLKENQWVISSSDFHMKIPAKERLKFLFDNAKYCLLDQPQVCQDPLKFRDNKKY 93 (284) Q Consensus 14 ~~~~kk~ip~~lW~kCp~C~~~i~~~~l~~n~~VCp~C~~H~rl~areRi~~l~D~gsf~Ei~~~~~~~DPL~F~d~k~Y 93 (284) +.+.|+.-.- -+.|-.||..-|+.. -.+|..|||. +++.| +| ||... T Consensus 6 ~SfGKr~~Kt--H~lCrRCG~~syH~q----K~~CasCGyp---a~k~R--------~Y-------------nWs~K--- 52 (97) T 2zkr_2 6 SSFGKRRNKT--HTLCRRCGSKAYHLQ----KSTCGKCGYP---AKRKR--------KY-------------NWSAK--- 52 (97) T ss_dssp SSCSCSCCCC--EECCTTTCSSCEETT----SCCBTTTCTT---TSSCC--------CC-------------SSSSC--- T ss_pred CCCCCCCCCC--CCHHCCCCCHHHHCC----CCCCCCCCCC---HHHHC--------CC-------------CHHHH--- T ss_conf 6767767876--451027696244303----0301003897---66614--------65-------------50333--- Q ss_pred HHHHHHHHHHCCCCCCEEEEEEEEECEEEEEEEEECHHHCCCC Q ss_conf 5667766642166771699987870414999998330318535 Q gi|254780820|r 94 IDRLKENRSKTGLIDSIVSAVGNVRDFKLVAVVHEFSFIGGSI 136 (284) Q Consensus 94 ~drl~~a~~kTg~~davv~G~G~I~G~~vvv~~~df~F~GGSm 136 (284) .-+. -.+|.|..--...|.--+.-.|.-|+. T Consensus 53 -----akrr-------~ttGtGrmr~lk~v~rrfkngfregt~ 83 (97) T 2zkr_2 53 -----AKRR-------NTTGTGRMRHLKIVYRRFRHGFREGTT 83 (97) T ss_dssp -----C------------------------------------- T ss_pred -----HCCC-------CCCCCCHHHHHHHHHHHHHCCCCCCCC T ss_conf -----2036-------777743117899999998657666877 No 269 >2odx_A Cytochrome C oxidase polypeptide IV; all beta-protein, metallo-protein, oxidoreductase; NMR {Saccharomyces cerevisiae} Probab=26.44 E-value=17 Score=15.86 Aligned_cols=34 Identities=15% Similarity=0.138 Sum_probs=20.1 Q ss_pred CCEECCCCCC----EEEHHHHHHHCCCCCCCCCCEECC Q ss_conf 0105667687----221788986338388998962437 Q gi|254780820|r 25 LWVKCPETGA----MVYHKDLKENQWVISSSDFHMKIP 58 (284) Q Consensus 25 lW~kCp~C~~----~i~~~~l~~n~~VCp~C~~H~rl~ 58 (284) --+-|..|.+ +++-.--+....-||.||+.|+|. T Consensus 32 RiVGC~g~~~dsh~v~W~~l~~g~~~RC~eCG~~fkL~ 69 (80) T 2odx_A 32 RYVGCTGSPAGSHTIMWLKPTVNEVARCWECGSVYKLN 69 (80) T ss_dssp CCEEESSSTTCCSCCEEECCCTTCEEECSSSCCEEEEC T ss_pred EEEEEECCCCCCCEEEEEEECCCCCCCCCCCCCEEEEE T ss_conf 79877578888746689996079842356688699998 No 270 >1vq8_1 50S ribosomal protein L37E; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.2 PDB: 1vq4_1* 1vq5_1* 1vq6_1* 1vq7_1* 1s72_1* 1vq9_1* 1vqk_1* 1vql_1* 1vqm_1* 1vqn_1* 1vqo_1* 1vqp_1* 1yhq_1* 1yi2_1* 1yij_1* 1yit_1* 1yj9_1* 1yjn_1* 1yjw_1* 2otj_1* ... Probab=26.30 E-value=20 Score=15.29 Aligned_cols=33 Identities=30% Similarity=0.515 Sum_probs=24.1 Q ss_pred CCCCCCCCCCCCEECCCCCCEEEHHHHHHHCCCCCCCCC Q ss_conf 542224774601056676872217889863383889989 Q gi|254780820|r 15 VFGRRAIPENLWVKCPETGAMVYHKDLKENQWVISSSDF 53 (284) Q Consensus 15 ~~~kk~ip~~lW~kCp~C~~~i~~~~l~~n~~VCp~C~~ 53 (284) .+.|+.-.. -+-|..||..-|+.. -.+|..||| T Consensus 8 SfGKr~~kt--H~~CrRCG~~syH~q----K~~CasCGy 40 (57) T 1vq8_1 8 SQGKKNTTT--HTKCRRCGEKSYHTK----KKVCSSCGF 40 (57) T ss_dssp HHTTCCCCC--EEECTTTCSEEEETT----TTEETTTCT T ss_pred CCCCCCCCC--CCHHCCCCCHHHHHC----CCCCCCCCC T ss_conf 445557875--062027582244332----362331588 No 271 >1srv_A Protein (groel (HSP60 class)); chaperone, cell division, ATP-binding, phosphorylation; 1.70A {Thermus thermophilus} SCOP: c.8.5.1 Probab=26.16 E-value=29 Score=14.14 Aligned_cols=66 Identities=21% Similarity=0.282 Sum_probs=41.6 Q ss_pred HHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCCEEE Q ss_conf 99999999999862896899976888776521246777788999999998629988998567642011112014685255 Q gi|254780820|r 141 GEAIVKSCERAIAEKCPLVMFTASGGARMQEGILSLMQLPRTTIAINMLKDAGLPYIVVLTNPTTGGVTASYAMLGDIHL 220 (284) Q Consensus 141 geki~~a~e~A~~~~~PlI~~~~SGGaRMqEG~~sL~qMakt~~a~~~l~~~~lP~I~vl~~pt~GGv~AS~a~lgDiii 220 (284) -+-|..+.|.+.+++-||+++++.-. +-+++ +..++++ .|..-+++..-|-+|-. --.+|.|+-+ T Consensus 39 ~~~ilp~Le~~~~~~rPLlIIAedi~----~eaL~-------~Lv~N~~--~g~l~v~aVkaP~fG~~--r~~~L~DlAi 103 (145) T 1srv_A 39 VRELLPILEQVAQTGKPLLIIAEDVE----GEALA-------TLVVNKL--RGTLSVAAVKAPGFGDR--RKEMLKDIAA 103 (145) T ss_dssp HHHHHHHHHHHHTTTCCEEEEESEEC----HHHHH-------HHHHHHH--TTSCCEEEEECCSSHHH--HHHHHHHHHH T ss_pred HHHHHHHHHHHHHHCCCEEEEECCCC----HHHHH-------HHHHHHH--HCCCEEEEEECCCCCHH--HHHHCCHHHH T ss_conf 99999999999971996799957667----89999-------9999986--08817999939998655--5554425353 Q ss_pred E Q ss_conf 5 Q gi|254780820|r 221 A 221 (284) Q Consensus 221 a 221 (284) . T Consensus 104 ~ 104 (145) T 1srv_A 104 V 104 (145) T ss_dssp H T ss_pred H T ss_conf 1 No 272 >2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Probab=26.15 E-value=25 Score=14.64 Aligned_cols=35 Identities=17% Similarity=0.279 Sum_probs=18.6 Q ss_pred EECCCCCCEEEHHH-HH--------HHCCCCCCCCCCEECCHHH Q ss_conf 05667687221788-98--------6338388998962437999 Q gi|254780820|r 27 VKCPETGAMVYHKD-LK--------ENQWVISSSDFHMKIPAKE 61 (284) Q Consensus 27 ~kCp~C~~~i~~~~-l~--------~n~~VCp~C~~H~rl~are 61 (284) .+|+.|+....... |. +..|.|+.|+.-|.-...- T Consensus 8 f~C~~C~k~F~~~~~l~~H~~~H~~~~~~~C~~C~~~f~~~~~l 51 (95) T 2yt9_A 8 VACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRM 51 (95) T ss_dssp EECSSSCCEESSSHHHHHHHHHSCSSCSEECSSSCCEESCHHHH T ss_pred CCCCCCCCCCCCHHHHHHHHHHCCCCCCEECCCCCCCCCCCHHH T ss_conf 09999987839899999999871899885368888742124687 No 273 >1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1 Probab=25.77 E-value=13 Score=16.80 Aligned_cols=23 Identities=4% Similarity=0.001 Sum_probs=15.9 Q ss_pred CCCCCCEEEHHHHHHHCCCCCCCCCC Q ss_conf 66768722178898633838899896 Q gi|254780820|r 29 CPETGAMVYHKDLKENQWVISSSDFH 54 (284) Q Consensus 29 Cp~C~~~i~~~~l~~n~~VCp~C~~H 54 (284) ||+|+..+...+++ +.||+|++. T Consensus 127 c~~~~~~l~d~~v~---g~cp~~~~~ 149 (722) T 1rqg_A 127 CEHDKMFLPDRFVI---GTCPYCGAE 149 (722) T ss_dssp BTTTTBCCCGGGCC---SBCSSSCCS T ss_pred CCCCCCCCCCHHEE---CCCCCCCCC T ss_conf 77635261562034---524665654 No 274 >2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A Probab=25.67 E-value=17 Score=15.78 Aligned_cols=26 Identities=12% Similarity=0.280 Sum_probs=18.5 Q ss_pred CCCCCEECCCCCCEEEHHHHHHHCCCCCCCCC Q ss_conf 74601056676872217889863383889989 Q gi|254780820|r 22 PENLWVKCPETGAMVYHKDLKENQWVISSSDF 53 (284) Q Consensus 22 p~~lW~kCp~C~~~i~~~~l~~n~~VCp~C~~ 53 (284) .++.|+ ||+|+.+.|.+. ..|..|+. T Consensus 3 ~~~DW~-C~~C~~~NFa~R-----~~C~~C~~ 28 (33) T 2k1p_A 3 SANDWQ-CKTCSNVNWARR-----SECNMCNT 28 (33) T ss_dssp SSSSCB-CSSSCCBCCTTC-----SBCSSSCC T ss_pred CCCCCC-CCCCCCEECCCC-----CCCCCCCC T ss_conf 774775-788979533576-----95548889 No 275 >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} Probab=25.57 E-value=12 Score=17.00 Aligned_cols=27 Identities=22% Similarity=0.289 Sum_probs=17.2 Q ss_pred EECCCCCCEEEHHHHHH-----------HCCCCCCCCC Q ss_conf 05667687221788986-----------3383889989 Q gi|254780820|r 27 VKCPETGAMVYHKDLKE-----------NQWVISSSDF 53 (284) Q Consensus 27 ~kCp~C~~~i~~~~l~~-----------n~~VCp~C~~ 53 (284) .+|++||..+...|-.+ ..-+|--|-. T Consensus 5 ~kC~GCG~~lQ~~d~~~~GYvp~~~~~~~~~~C~RC~~ 42 (368) T 3h2y_A 5 IKCIGCGVEIQTEDKNEVGYAPASSLEKEQVICQRCFR 42 (368) T ss_dssp -------------------------------------- T ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHCCCCCEEEHHHHH T ss_conf 88589873007778998988867895667778622415 No 276 >2qpz_A Naphthalene 1,2-dioxygenase system ferredoxin subunit; rieske ferredoxin, 2Fe-2S, aromatic hydrocarbons catabolism, electron transport, iron; 1.85A {Pseudomonas putida} Probab=25.33 E-value=10 Score=17.51 Aligned_cols=31 Identities=10% Similarity=0.057 Sum_probs=24.7 Q ss_pred EECCCCCCEEEHHHHHHHCCCCCCCCCCEEC Q ss_conf 0566768722178898633838899896243 Q gi|254780820|r 27 VKCPETGAMVYHKDLKENQWVISSSDFHMKI 57 (284) Q Consensus 27 ~kCp~C~~~i~~~~l~~n~~VCp~C~~H~rl 57 (284) -.||-.+..+..-+++.+.-+||.++..|.+ T Consensus 42 ~~CpH~~~~l~~g~~~~~~i~Cp~Hg~~F~~ 72 (103) T 2qpz_A 42 NLCTHGSARMSDGYLEGREIECPLHQGRFDV 72 (103) T ss_dssp SBCSSSSCBGGGSEEETTEEECTTTTCEEET T ss_pred EECCCCCCCCCCCCCCCCEEEECCCCCEEEC T ss_conf 6789999644234317999981898989989 No 277 >1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y* Probab=25.22 E-value=7.3 Score=18.59 Aligned_cols=35 Identities=20% Similarity=0.356 Sum_probs=23.8 Q ss_pred CCCEECCCCCCEEEHHHHHHHCCCCCCCCCCEECCH Q ss_conf 601056676872217889863383889989624379 Q gi|254780820|r 24 NLWVKCPETGAMVYHKDLKENQWVISSSDFHMKIPA 59 (284) Q Consensus 24 ~lW~kCp~C~~~i~~~~l~~n~~VCp~C~~H~rl~a 59 (284) .-=.+||.|+..--++. .--.|-|.+|++-|-=.| T Consensus 25 ~~ky~Cp~Cgk~~vkR~-a~GIW~C~~C~~~~aGGA 59 (73) T 1ffk_W 25 KKKYKCPVCGFPKLKRA-STSIWVCGHCGYKIAGGA 59 (73) T ss_pred CCCCCCCCCCCCEEEEE-EEEEEECCCCCCEEECCC T ss_conf 17760998999777889-988987479999886886 No 278 >2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Probab=24.62 E-value=21 Score=15.18 Aligned_cols=38 Identities=11% Similarity=0.059 Sum_probs=24.1 Q ss_pred EECCCCCCEEEH-HHH----HH--------HCCCCCCCCCCEECCHHHHHH Q ss_conf 056676872217-889----86--------338388998962437999999 Q gi|254780820|r 27 VKCPETGAMVYH-KDL----KE--------NQWVISSSDFHMKIPAKERLK 64 (284) Q Consensus 27 ~kCp~C~~~i~~-~~l----~~--------n~~VCp~C~~H~rl~areRi~ 64 (284) .+|+.|+..... ..| .. ..|.|+.|++-|+-...-+.- T Consensus 19 f~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~y~C~~C~~~f~~~~~L~~H 69 (102) T 2ghf_A 19 YECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEH 69 (102) T ss_dssp EECSSCSCEESCHHHHHHHHHHHCSSCCCSCCEEETTTTEEESSTHHHHTH T ss_pred EECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEECCHHHHHHC T ss_conf 899999987286689999867766786576787989999840857997310 No 279 >3jyw_Y 60S ribosomal protein L37(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} Probab=24.48 E-value=22 Score=15.07 Aligned_cols=25 Identities=20% Similarity=0.357 Sum_probs=20.9 Q ss_pred CEECCCCCCEEEHHHHHHHCCCCCCCCCC Q ss_conf 10566768722178898633838899896 Q gi|254780820|r 26 WVKCPETGAMVYHKDLKENQWVISSSDFH 54 (284) Q Consensus 26 W~kCp~C~~~i~~~~l~~n~~VCp~C~~H 54 (284) -+.|-.||..-|+.. -.+|..|||. T Consensus 15 H~~CrrCG~~syH~q----K~~CasCGyp 39 (52) T 3jyw_Y 15 HTLCNRCGRRSFHVQ----KKTCSSCGYP 39 (52) T ss_dssp EECCSSSCCCCEETT----TCCCSSSCSS T ss_pred CCHHCCCCCHHCEEC----CCCCCCCCCC T ss_conf 062007483220314----4602326898 No 280 >2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Probab=24.41 E-value=26 Score=14.44 Aligned_cols=37 Identities=11% Similarity=0.120 Sum_probs=22.5 Q ss_pred EECCCCCCEEEHHHH------------HHHCCCCCCCCCCEECCHHHHH Q ss_conf 056676872217889------------8633838899896243799999 Q gi|254780820|r 27 VKCPETGAMVYHKDL------------KENQWVISSSDFHMKIPAKERL 63 (284) Q Consensus 27 ~kCp~C~~~i~~~~l------------~~n~~VCp~C~~H~rl~areRi 63 (284) .+|+.|+...-.+.. ..+.|.|+.|++-|.-...-+. T Consensus 8 fkC~~C~~~F~~~~~L~~H~~~H~~~~~~~~~~C~~C~~~f~~~~~L~~ 56 (78) T 2d9h_A 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAA 56 (78) T ss_dssp EECSSSCCEESSHHHHHHHHHHHHHHTTTCCEECTTTCCEESSHHHHHH T ss_pred CCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCEECCCCCCEECCHHHHHH T ss_conf 1889997631969999999987137767765463997994079999999 No 281 >1ohe_A CDC14B, CDC14B2 phosphatase; protein phosphatase, cell cycle, hydrolase; HET: SEP; 2.20A {Homo sapiens} SCOP: c.45.1.1 c.45.1.1 PDB: 1ohc_A 1ohd_A Probab=24.07 E-value=26 Score=14.45 Aligned_cols=18 Identities=33% Similarity=0.604 Sum_probs=10.7 Q ss_pred CCEEEEECCCEEECCCHH Q ss_conf 852555314211023278 Q gi|254780820|r 216 GDIHLAEPGAEIGFAGRR 233 (284) Q Consensus 216 gDiiiaep~a~igFaG~r 233 (284) ||+.-..|+-.|+|+||. T Consensus 176 gD~nWIiP~kflAf~~P~ 193 (348) T 1ohe_A 176 GDLNWIIPDRFIAFCGPH 193 (348) T ss_dssp TCEEEEETTTEEEECCCC T ss_pred CCCCCCCCCCEEEECCCC T ss_conf 875545777558864887 No 282 >1rlm_A Phosphatase; HAD family, rossman fold, hydrolase; 1.90A {Escherichia coli} SCOP: c.108.1.10 PDB: 1rlt_A 1rlo_A* 2hf2_A Probab=23.88 E-value=32 Score=13.84 Aligned_cols=16 Identities=25% Similarity=0.517 Sum_probs=8.2 Q ss_pred CCCCCEECCCCCCEEEH Q ss_conf 74601056676872217 Q gi|254780820|r 22 PENLWVKCPETGAMVYH 38 (284) Q Consensus 22 p~~lW~kCp~C~~~i~~ 38 (284) +...|.-|. .|..++. T Consensus 59 ~~~~~~i~~-nGa~i~~ 74 (271) T 1rlm_A 59 KDEISFVAE-NGALVYE 74 (271) T ss_dssp TTTSEEEEG-GGTEEEE T ss_pred CCCCCEEEC-CCCEEEE T ss_conf 877758944-9709996 No 283 >1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ... Probab=23.47 E-value=29 Score=14.12 Aligned_cols=31 Identities=10% Similarity=0.090 Sum_probs=21.7 Q ss_pred CCCCCEECCCCCCEEEHHHHHHHCCCCCCCCCC Q ss_conf 746010566768722178898633838899896 Q gi|254780820|r 22 PENLWVKCPETGAMVYHKDLKENQWVISSSDFH 54 (284) Q Consensus 22 p~~lW~kCp~C~~~i~~~~l~~n~~VCp~C~~H 54 (284) +..++.-|-+|+..+--+. ...--|.+|||- T Consensus 24 ~~~v~YiCg~Cg~~~~l~~--~d~IrC~~CG~R 54 (70) T 1twf_L 24 TATLKYICAECSSKLSLSR--TDAVRCKDCGHR 54 (70) T ss_dssp -CCCCEECSSSCCEECCCT--TSTTCCSSSCCC T ss_pred CCCEEEECCCCCCCEEECC--CCCEECCCCCCE T ss_conf 8516888867998116289--998877848857 No 284 >3g1w_A Sugar ABC transporter; sugar-binding protein, target 11229F, transport protein, structural genomics, PSI-2; 2.02A {Bacillus halodurans c-125} Probab=23.26 E-value=33 Score=13.76 Aligned_cols=28 Identities=18% Similarity=0.280 Sum_probs=14.1 Q ss_pred HHHHCCCCCEEE--CHHHHH-HHHHHHHHHH Q ss_conf 999689835373--589999-9999999997 Q gi|254780820|r 252 YLVEHGMIDRIV--HRHDIP-EVVSSLCKIL 279 (284) Q Consensus 252 ~l~~~G~iD~iv--~r~~l~-~~i~~ll~il 279 (284) -.++.|.++..+ +..++- ..+..+++++ T Consensus 228 ~~i~~g~i~atv~~~~~~~G~~av~~l~~~~ 258 (305) T 3g1w_A 228 DLVDEGIISATLAQGTWNMGYWSLTYLFHLH 258 (305) T ss_dssp HHHHTTSSCEEEEECHHHHHHHHHHHHHHHH T ss_pred HHHHCCCCEEEEECCHHHHHHHHHHHHHHHH T ss_conf 9998599569992899999999999999997 No 285 >2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus} Probab=23.08 E-value=9.5 Score=17.73 Aligned_cols=32 Identities=16% Similarity=0.190 Sum_probs=20.7 Q ss_pred CCCCCCCEECCCCCCEEEHHHHHHHCCCCCCCCCCEECCHH Q ss_conf 47746010566768722178898633838899896243799 Q gi|254780820|r 20 AIPENLWVKCPETGAMVYHKDLKENQWVISSSDFHMKIPAK 60 (284) Q Consensus 20 ~ip~~lW~kCp~C~~~i~~~~l~~n~~VCp~C~~H~rl~ar 60 (284) .+++. ..||-|.+.+.. -.+. .|||.|=...- T Consensus 15 ~l~~~--l~CpIC~~~~~~------pv~~-~CgH~fC~~Ci 46 (85) T 2ecw_A 15 MIKEE--VTCPICLELLKE------PVSA-DCNHSFCRACI 46 (85) T ss_dssp CCCTT--TSCTTTCSCCSS------CEEC-TTSCCBCHHHH T ss_pred HCCCC--CCCCCCCCCCCC------EEEC-CCCCCHHHHHH T ss_conf 66223--998494832078------0688-89973659999 No 286 >2hc8_A PACS, cation-transporting ATPase, P-type; copper, COPA, COPB, actuator, transport protein; 1.65A {Archaeoglobus fulgidus} PDB: 2voy_F Probab=23.06 E-value=19 Score=15.55 Aligned_cols=95 Identities=21% Similarity=0.258 Sum_probs=58.8 Q ss_pred HHHHHHHCCCCEEEEECCCCCCEEEEEECCCCCEEEEECCCEEECCCHHHHH--------HHHCCCCCCCCH-----HHH Q ss_conf 9999986299889985676420111120146852555314211023278878--------763677887202-----159 Q gi|254780820|r 185 AINMLKDAGLPYIVVLTNPTTGGVTASYAMLGDIHLAEPGAEIGFAGRRVIE--------QTVREKLPDGFQ-----RSE 251 (284) Q Consensus 185 a~~~l~~~~lP~I~vl~~pt~GGv~AS~a~lgDiiiaep~a~igFaG~rVi~--------~t~~~~lp~~fq-----tae 251 (284) |+..|.+-.-++..|+.|-..==+.++----||+++-.||..|-.-| +|++ ..+||.+|-... -|. T Consensus 2 ai~~L~~l~p~~a~V~rdg~~~~i~~~~l~~GDiv~v~~Gd~IPaDg-~v~~g~~~vdes~lTGEs~pv~k~~g~~v~aG 80 (113) T 2hc8_A 2 AIKKLVGLQAKTAVVIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDG-VVVEGESYVDESMISGEPVPVLKSKGDEVFGA 80 (113) T ss_dssp HHHHHHHHSCSEEEEEETTEEEEEEGGGCCTTCEEEECTTCBCCSEE-EEEECCEEEECHHHHCCSSCEEECTTCEECTT T ss_pred HHHHHHHCCCCEEEEEECCEEEEEEHHHCCCCCEEEECCCCEEECCE-EEEECCCCCCCHHHCCCCCCEEECCCCEEEEE T ss_conf 77976416999899999999999999997669999988999995172-67206313340555499633480689999876 Q ss_pred HHHHCCCCCEEECHHHHHHHHHHHHHHHH Q ss_conf 99968983537358999999999999972 Q gi|254780820|r 252 YLVEHGMIDRIVHRHDIPEVVSSLCKILT 280 (284) Q Consensus 252 ~l~~~G~iD~iv~r~~l~~~i~~ll~il~ 280 (284) .+...|.+...|.+.--..+++++++++- T Consensus 81 t~~~~g~~~~~v~~~g~~t~~~~i~~lv~ 109 (113) T 2hc8_A 81 TINNTGVLKIRATRVGGETLLAQIVKLVE 109 (113) T ss_dssp CEECSSCEEEEEEECGGGSHHHHHHHHHH T ss_pred EEEEEEEEEEEEEEEECCCHHHHHHHHHH T ss_conf 59905899999999805789999999999 No 287 >2qy9_A Cell division protein FTSY; SRP receptor, protein targeting, simibi class GTPase, cell cycle, GTP-binding, inner membrane, membrane; 1.90A {Escherichia coli} SCOP: a.24.13.1 c.37.1.10 PDB: 1fts_A Probab=22.97 E-value=33 Score=13.72 Aligned_cols=88 Identities=19% Similarity=0.267 Sum_probs=49.6 Q ss_pred EECEEEEEEEEECH------------------HHCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHH Q ss_conf 70414999998330------------------318535778999999999999862896899976888776521246777 Q gi|254780820|r 117 VRDFKLVAVVHEFS------------------FIGGSIGIAAGEAIVKSCERAIAEKCPLVMFTASGGARMQEGILSLMQ 178 (284) Q Consensus 117 I~G~~vvv~~~df~------------------F~GGSmG~~~geki~~a~e~A~~~~~PlI~~~~SGGaRMqEG~~sL~q 178 (284) -+|..|++++.|-. |....-+.--..-+-++++.|..++..+|++-. .| |+|-...-+.+ T Consensus 125 ~~~~~V~lva~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~d~~~i~~~~~~~a~~~~~D~vliDT-aG-R~~~~~~lm~E 202 (309) T 2qy9_A 125 QQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKARNIDVLIADT-AG-RLQNKSHLMEE 202 (309) T ss_dssp TTTCCEEEECCCTTCHHHHHHHHHHHHHTTCCEECCSTTCCHHHHHHHHHHHHHHTTCSEEEECC-CC-CGGGHHHHHHH T ss_pred HCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECC-CC-CCCCCHHHHHH T ss_conf 56776148644530654999999987524983773378887999999999999976998999689-88-77678999999 Q ss_pred HHHHHHHHHHHHHCCCCEEEEEC-CCCCCE Q ss_conf 78899999999862998899856-764201 Q gi|254780820|r 179 LPRTTIAINMLKDAGLPYIVVLT-NPTTGG 207 (284) Q Consensus 179 Makt~~a~~~l~~~~lP~I~vl~-~pt~GG 207 (284) |.+....++++ ...-|.-++|+ +.++|- T Consensus 203 L~~i~~~~~~~-~~~~p~e~~LVlda~~g~ 231 (309) T 2qy9_A 203 LKKIVRVMKKL-DVEAPHEVMLTIDASTGQ 231 (309) T ss_dssp HHHHHHHHTTT-CTTCCSEEEEEEEGGGTH T ss_pred HHHHHHHHHHH-CCCCCCEEEEECCCCCCH T ss_conf 99999998753-367872456510032337 No 288 >2fnf_X Putative RAS effector NORE1; zinc, signal transduction, apoptosis, cysteine rich domain; NMR {Mus musculus} Probab=22.85 E-value=23 Score=14.89 Aligned_cols=24 Identities=17% Similarity=0.194 Sum_probs=19.2 Q ss_pred EECCCCCCEEEHHHHHHHCCCCCCCCCCE Q ss_conf 05667687221788986338388998962 Q gi|254780820|r 27 VKCPETGAMVYHKDLKENQWVISSSDFHM 55 (284) Q Consensus 27 ~kCp~C~~~i~~~~l~~n~~VCp~C~~H~ 55 (284) ..|..|++.||. +-+-|..|++.. T Consensus 36 t~C~~C~~~i~~-----~g~~C~~C~~~~ 59 (72) T 2fnf_X 36 GWCDLCGREVLR-----QALRCANCKFTC 59 (72) T ss_dssp CBCTTTSSBCSS-----CCEECTTSSCEE T ss_pred CCCHHHCHHHHH-----CCCEECCCCCHH T ss_conf 496013855796-----285708898935 No 289 >2jz8_A Uncharacterized protein BH09830; zinc binding, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Bartonella henselae str} Probab=22.76 E-value=15 Score=16.19 Aligned_cols=33 Identities=3% Similarity=0.038 Sum_probs=20.7 Q ss_pred EECCCCCC-----EEEHHHHHHHCCCCCCCCCCEECCH Q ss_conf 05667687-----2217889863383889989624379 Q gi|254780820|r 27 VKCPETGA-----MVYHKDLKENQWVISSSDFHMKIPA 59 (284) Q Consensus 27 ~kCp~C~~-----~i~~~~l~~n~~VCp~C~~H~rl~a 59 (284) +.|..-+. .+|-+-=+++.-+||+|+.-|+..+ T Consensus 25 v~CdGg~~~lgHP~Vyl~~~~~~~v~CpYC~~~fv~~~ 62 (87) T 2jz8_A 25 FMCVGATQPFDHPHIFIDMGSTDEKICPYCSTLYRYDP 62 (87) T ss_dssp EECCCSSCSSSSSSCEEECTTCCEECCTTTCCEEECCT T ss_pred EEECCCCCCCCCCEEEEECCCCCEEECCCCCCEEEECC T ss_conf 99749999999998978869999798889998888377 No 290 >1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A* Probab=22.73 E-value=33 Score=13.69 Aligned_cols=58 Identities=14% Similarity=0.229 Sum_probs=33.8 Q ss_pred HHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEEC Q ss_conf 999999999986289689997688877652124677778899999999862998899856764201111201 Q gi|254780820|r 142 EAIVKSCERAIAEKCPLVMFTASGGARMQEGILSLMQLPRTTIAINMLKDAGLPYIVVLTNPTTGGVTASYA 213 (284) Q Consensus 142 eki~~a~e~A~~~~~PlI~~~~SGGaRMqEG~~sL~qMakt~~a~~~l~~~~lP~I~vl~~pt~GGv~AS~a 213 (284) +-+.++.+.+.+.+..+|+- -+|| |.+-.+|..+. ..++|+|+|-|-+.+|....+++ T Consensus 73 ~~v~~~~~~~~~~~~D~Iva-vGGG--------s~~D~aK~~A~-----~~~~p~i~IPTt~~t~se~t~~a 130 (370) T 1jq5_A 73 NEVERIANIARKAEAAIVIG-VGGG--------KTLDTAKAVAD-----ELDAYIVIVPTAASTDAPTSALS 130 (370) T ss_dssp HHHHHHHHHHHHTTCSEEEE-EESH--------HHHHHHHHHHH-----HHTCEEEEEESSCCSSCTTCSEE T ss_pred HHHHHHHHHHHHCCCCEEEE-CCCC--------CCCCHHHHHHC-----CCCCCEEEECCCCCCCCCCCCEE T ss_conf 99999999976048878997-3786--------30201212210-----14663255236434665667706 No 291 >2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Probab=22.71 E-value=28 Score=14.24 Aligned_cols=14 Identities=7% Similarity=0.062 Sum_probs=6.1 Q ss_pred CCCCCCCCCEECCH Q ss_conf 83889989624379 Q gi|254780820|r 46 WVISSSDFHMKIPA 59 (284) Q Consensus 46 ~VCp~C~~H~rl~a 59 (284) |.|+.|+.-|.-.. T Consensus 38 ~~C~~C~~~f~~~~ 51 (110) T 2csh_A 38 YGCGVCGKKFKMKH 51 (110) T ss_dssp EECTTTSCEESSSH T ss_pred EECCCCCCCCCCHH T ss_conf 46885565433201 No 292 >1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2 Probab=22.70 E-value=19 Score=15.43 Aligned_cols=30 Identities=3% Similarity=0.173 Sum_probs=17.2 Q ss_pred CCCCCEECCCCCCEEEHHHH------------HHHCCCCCCC Q ss_conf 74601056676872217889------------8633838899 Q gi|254780820|r 22 PENLWVKCPETGAMVYHKDL------------KENQWVISSS 51 (284) Q Consensus 22 p~~lW~kCp~C~~~i~~~~l------------~~n~~VCp~C 51 (284) .++.|+.|..|..-++..=+ ....|+||.| T Consensus 26 ~~~~mi~Cd~C~~w~H~~C~~~~~~~~~~~~~~~~~w~C~~C 67 (76) T 1wem_A 26 NNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNC 67 (76) T ss_dssp CSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHH T ss_pred CCCCEEEECCCCCCCCHHHCCCCHHCCCCCCCCCCCEECCCC T ss_conf 999688839999366774559871001214789981899688 No 293 >3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics, structural proteomics in europe, spine; 2.70A {Klebsiella pneumoniae} Probab=22.48 E-value=34 Score=13.65 Aligned_cols=113 Identities=14% Similarity=0.163 Sum_probs=63.3 Q ss_pred HHCCCCCCCCCCCCCC---CCHHCCCCC------CCCHHHHHHHHHHHCCCCCCEEEEEEEEECEEEEEEEEECHHHCCC Q ss_conf 8455654201334568---702018676------4203566776664216677169998787041499999833031853 Q gi|254780820|r 65 FLFDNAKYCLLDQPQV---CQDPLKFRD------NKKYIDRLKENRSKTGLIDSIVSAVGNVRDFKLVAVVHEFSFIGGS 135 (284) Q Consensus 65 ~l~D~gsf~Ei~~~~~---~~DPL~F~d------~k~Y~drl~~a~~kTg~~davv~G~G~I~G~~vvv~~~df~F~GGS 135 (284) .+|.+|.++++...+. ...+|=..| ..++-|++.++-++.|.. + .-++.+ T Consensus 14 i~fG~g~l~~l~~~~~~~g~kkvlivt~~~~~~~~~~~~~~v~~~L~~~gi~--~-~vf~~v------------------ 72 (387) T 3bfj_A 14 NFFGPNAISVVGERCQLLGGKKALLVTDKGLRAIKDGAVDKTLHYLREAGIE--V-AIFDGV------------------ 72 (387) T ss_dssp EEESTTGGGGHHHHHHHTTCSEEEEECCTTTC--CCSSHHHHHHHHHHTTCE--E-EEECCC------------------ T ss_pred EEECCCHHHHHHHHHHHCCCCEEEEEECCCHHHHCCCHHHHHHHHHHHCCCE--E-EEECCC------------------ T ss_conf 8988099999999999739986999989767861156999999999976995--9-998373------------------ Q ss_pred CCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHH-------------HHCCCCEEEEECC Q ss_conf 577899999999999986289689997688877652124677778899999999-------------8629988998567 Q gi|254780820|r 136 IGIAAGEAIVKSCERAIAEKCPLVMFTASGGARMQEGILSLMQLPRTTIAINML-------------KDAGLPYIVVLTN 202 (284) Q Consensus 136 mG~~~geki~~a~e~A~~~~~PlI~~~~SGGaRMqEG~~sL~qMakt~~a~~~l-------------~~~~lP~I~vl~~ 202 (284) -+...-+-+.++++.+.+.+..+|+ .-+|| |-|-.+|..+.+-.. ....+|.|++-|- T Consensus 73 ~~~p~~~~v~~~~~~~~~~~~D~Ii-avGGG--------s~iD~aK~va~~~~~~~~~~~~~~~~~~~~~~~p~~~vpTt 143 (387) T 3bfj_A 73 EPNPKDTNVRDGLAVFRREQCDIIV-TVGGG--------SPHDCGKGIGIAATHEGDLYQYAGIETLTNPLPPIVAVNTT 143 (387) T ss_dssp CSSCBHHHHHHHHHHHHHTTCCEEE-EEESH--------HHHHHHHHHHHHHHSSSCSGGGCBSSCCCSCCCCEEEEECS T ss_pred CCCCCHHHHHHHHHHHHHCCCCEEE-ECCCC--------CCCCHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCEEEECCC T ss_conf 6899999999999988733998899-80886--------40008888999970898778860554343467855674156 Q ss_pred CCCCE Q ss_conf 64201 Q gi|254780820|r 203 PTTGG 207 (284) Q Consensus 203 pt~GG 207 (284) +++|. T Consensus 144 a~tgs 148 (387) T 3bfj_A 144 AGTAS 148 (387) T ss_dssp TTCCG T ss_pred CCCCC T ss_conf 45643 No 294 >3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae} Probab=22.28 E-value=16 Score=15.99 Aligned_cols=34 Identities=9% Similarity=0.154 Sum_probs=19.9 Q ss_pred EECCCCCCEEEHHHHHHHCCCCCCCCCCEECCHHHHHHHHCCC Q ss_conf 0566768722178898633838899896243799999984556 Q gi|254780820|r 27 VKCPETGAMVYHKDLKENQWVISSSDFHMKIPAKERLKFLFDN 69 (284) Q Consensus 27 ~kCp~C~~~i~~~~l~~n~~VCp~C~~H~rl~areRi~~l~D~ 69 (284) .+||=|.+.+..+ .+.+.|||.|--.+ |...++. T Consensus 182 l~CPI~~~~m~dP------V~~~~CgHtfer~~---I~~~l~~ 215 (267) T 3htk_C 182 LTCPITCKPYEAP------LISRKCNHVFDRDG---IQNYLQG 215 (267) T ss_dssp SBCTTTSSBCSSE------EEESSSCCEEEHHH---HHHHSTT T ss_pred EECCCCCHHHHCC------CCCCCCCCEECHHH---HHHHHHH T ss_conf 5895848387636------54487998437999---9999985 No 295 >3cov_A Pantothenate synthetase; pantothenate biosynthesis, enzymes, ligase, drug design, ATP-binding, cytoplasm, magnesium, metal-binding; 1.50A {Mycobacterium tuberculosis} SCOP: c.26.1.4 PDB: 3cow_A* 3coy_A* 3coz_A* 3imc_A* 3ime_A* 3img_A* 3iob_A* 3ioc_A* 3iod_A* 3ioe_A* 3iub_A* 3iue_A* 3ivc_A* 3ivg_A* 3ivx_A* 2a84_A* 1n2b_A* 1n2e_A* 1n2g_A* 1n2h_A* ... Probab=22.19 E-value=34 Score=13.61 Aligned_cols=69 Identities=19% Similarity=0.385 Sum_probs=27.8 Q ss_pred HHCCCCCHHHHHHHHHHHHHHHH-HCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCEE Q ss_conf 31853577899999999999986-2896899976888776521246777788999999998629988998567642011 Q gi|254780820|r 131 FIGGSIGIAAGEAIVKSCERAIA-EKCPLVMFTASGGARMQEGILSLMQLPRTTIAINMLKDAGLPYIVVLTNPTTGGV 208 (284) Q Consensus 131 F~GGSmG~~~geki~~a~e~A~~-~~~PlI~~~~SGGaRMqEG~~sL~qMakt~~a~~~l~~~~lP~I~vl~~pt~GGv 208 (284) |--|+|-...--.=.+..-.+.+ .+.++-.+...|. +|||-+||+.-||- . ++..-.+|+..||+-=+. T Consensus 7 ~~~~~m~i~~~~~e~~~~~~~~r~~g~~ig~VPTMGa--LH~GHlsLI~~A~~------~-~~d~vvVSIFVNP~QF~~ 76 (301) T 3cov_A 7 FHPGELNVYSAPGDVADVSRALRLTGRRVMLVPTMGA--LHEGHLALVRAAKR------V-PGSVVVVSIFVNPMQFGA 76 (301) T ss_dssp CCTTSCEEECSHHHHHHHHHHHHHTTCEEEEEEECSC--CCHHHHHHHHHHHT------S-TTEEEEEEECCCGGGCCS T ss_pred CCCCCEEEECCHHHHHHHHHHHHHHCCEEEEEECCCH--HHHHHHHHHHHHHH------C-CCCEEEEEEECCCCCCCC T ss_conf 8887349986899999999999982990899968721--75999999999865------2-799799999627534787 No 296 >3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus} Probab=22.05 E-value=34 Score=13.60 Aligned_cols=13 Identities=38% Similarity=0.478 Sum_probs=6.6 Q ss_pred CEEEEEEEEECHH Q ss_conf 4149999983303 Q gi|254780820|r 119 DFKLVAVVHEFSF 131 (284) Q Consensus 119 G~~vvv~~~df~F 131 (284) ..+|++...|-.| T Consensus 143 ~k~vaii~~~~~~ 155 (392) T 3lkb_A 143 GAKVALVVHPSPF 155 (392) T ss_dssp TCEEEEEECSSHH T ss_pred CCEEEEEECCCHH T ss_conf 9779999368706 No 297 >1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A* Probab=22.04 E-value=31 Score=13.88 Aligned_cols=21 Identities=10% Similarity=0.049 Sum_probs=15.6 Q ss_pred CCCCCEECCCCCCEEEHHHHHHHCCCCCCCCCCE Q ss_conf 7460105667687221788986338388998962 Q gi|254780820|r 22 PENLWVKCPETGAMVYHKDLKENQWVISSSDFHM 55 (284) Q Consensus 22 p~~lW~kCp~C~~~i~~~~l~~n~~VCp~C~~H~ 55 (284) -..+|+.|..|. .|+.|..|- T Consensus 41 Ss~~wv~~~~C~-------------~~~~c~~~~ 61 (361) T 1mpp_A 41 SSDTWVPHKGCD-------------NSEGCVGKR 61 (361) T ss_dssp CCCCEEEBTTCC-------------GGGTCCSSC T ss_pred CCCCEECCCCCC-------------CCCCCCCCC T ss_conf 753284158999-------------874436899 No 298 >2row_A RHO-associated protein kinase 2; ATP-binding, coiled coil, cytoplasm, membrane, metal-binding, nucleotide-binding, phorbol-ester binding; NMR {Rattus norvegicus} Probab=21.99 E-value=35 Score=13.59 Aligned_cols=28 Identities=7% Similarity=0.228 Sum_probs=18.4 Q ss_pred EECCCCCCEEEHHHHHHHCCCCCCCCCC Q ss_conf 0566768722178898633838899896 Q gi|254780820|r 27 VKCPETGAMVYHKDLKENQWVISSSDFH 54 (284) Q Consensus 27 ~kCp~C~~~i~~~~l~~n~~VCp~C~~H 54 (284) .+|..|+-...++=+.+.-.+|+.|+-+ T Consensus 55 ~~C~~C~~~~Hk~C~~~~~~~c~pC~~~ 82 (84) T 2row_A 55 LECRRCHIKCHKDHMDKKEEIIAPCKVY 82 (84) T ss_dssp EEESSSCCEEEHHHHHHTCTTCCCCSTT T ss_pred EECCCCCCHHHHHHCCCCCCCCCCCCCC T ss_conf 0778798944354531388858887778 No 299 >2avu_E Flagellar transcriptional activator FLHC; C4-type zinc finger, transcription activator; 3.00A {Escherichia coli} SCOP: e.64.1.1 Probab=21.82 E-value=14 Score=16.51 Aligned_cols=27 Identities=11% Similarity=0.117 Sum_probs=13.8 Q ss_pred CHHHCCCCCHHHHHHHHHHHHHHHHHC Q ss_conf 303185357789999999999998628 Q gi|254780820|r 129 FSFIGGSIGIAAGEAIVKSCERAIAEK 155 (284) Q Consensus 129 f~F~GGSmG~~~geki~~a~e~A~~~~ 155 (284) +.|+.+.-+...-|.+++|+.+=.+.- T Consensus 80 Y~~l~~~~~~~~ieAlikAYrlY~e~~ 106 (192) T 2avu_E 80 WQFLLKTGLCNGVDAVIKAYRLYLEQC 106 (192) T ss_dssp HHHHHHTTTCCSHHHHHHHHHHHHHHC T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHHC T ss_conf 999974348898999999999999973 No 300 >3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens} Probab=21.57 E-value=11 Score=17.28 Aligned_cols=31 Identities=3% Similarity=0.148 Sum_probs=20.1 Q ss_pred CCCCCEECCCCCCEEEHH-------HHHH-HCCCCCCCC Q ss_conf 746010566768722178-------8986-338388998 Q gi|254780820|r 22 PENLWVKCPETGAMVYHK-------DLKE-NQWVISSSD 52 (284) Q Consensus 22 p~~lW~kCp~C~~~i~~~-------~l~~-n~~VCp~C~ 52 (284) ++..|+.|..|..=.+.. +... +.|.||+|- T Consensus 16 ~~~fmI~CD~C~~WfH~~Cl~~~~~ev~~idky~C~~C~ 54 (447) T 3kv4_A 16 VTRFMIECDMCQDWFHGSCVGVEEEKAADIDLYHCPNCE 54 (447) T ss_dssp TTSCEEECTTTCCEEEHHHHTCCHHHHTTEEECCCHHHH T ss_pred CCCEEEECCCCCCCEECEECCCCHHHCCCCCEEECCCCC T ss_conf 986588899999977166289863417998667897981 No 301 >1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9 Probab=21.56 E-value=34 Score=13.62 Aligned_cols=15 Identities=40% Similarity=0.756 Sum_probs=11.0 Q ss_pred CCCCEECCCCCCEEE Q ss_conf 460105667687221 Q gi|254780820|r 23 ENLWVKCPETGAMVY 37 (284) Q Consensus 23 ~~lW~kCp~C~~~i~ 37 (284) +.+.++||.|+..+- T Consensus 6 ~~~~v~CP~C~k~v~ 20 (68) T 1lv3_A 6 ETITVNCPTCGKTVV 20 (68) T ss_dssp CCCEEECTTTCCEEE T ss_pred CCCCCCCCCCCCCCC T ss_conf 885214889998444 No 302 >3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A* Probab=21.56 E-value=20 Score=15.39 Aligned_cols=31 Identities=3% Similarity=0.093 Sum_probs=21.9 Q ss_pred CCCCCEECCCCCCEEEHHHH-----HH---HCCCCCCCC Q ss_conf 74601056676872217889-----86---338388998 Q gi|254780820|r 22 PENLWVKCPETGAMVYHKDL-----KE---NQWVISSSD 52 (284) Q Consensus 22 p~~lW~kCp~C~~~i~~~~l-----~~---n~~VCp~C~ 52 (284) ++..|+.|..|..-.+..=+ +. ..|.||+|- T Consensus 48 ~~~fmI~Cd~C~~wfH~~C~~~~~~~~~~i~~~~C~~C~ 86 (488) T 3kv5_D 48 VNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCA 86 (488) T ss_dssp TTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHH T ss_pred CCCEEEECCCCCCCEECCCCCCCHHCCCCCCEEECCCCC T ss_conf 882799899999985574789972205777368996994 No 303 >1rfh_A RAS association (ralgds/AF-6) domain family 5; zinc, signal transduction, apoptosis, cysteine rich domain, metal binding protein; NMR {Mus musculus} Probab=21.48 E-value=33 Score=13.77 Aligned_cols=25 Identities=16% Similarity=0.194 Sum_probs=20.2 Q ss_pred EECCCCCCEEEHHHHHHHCCCCCCCCCCEE Q ss_conf 056676872217889863383889989624 Q gi|254780820|r 27 VKCPETGAMVYHKDLKENQWVISSSDFHMK 56 (284) Q Consensus 27 ~kCp~C~~~i~~~~l~~n~~VCp~C~~H~r 56 (284) ..|..|++.|+. .-+.|..|++..- T Consensus 23 t~C~~C~~~i~~-----qg~~C~~C~~~~H 47 (59) T 1rfh_A 23 GWCDLCGREVLR-----QALRCANCKFTCH 47 (59) T ss_dssp EECTTTCSEECS-----CCEECTTTSCEEC T ss_pred CCCCCCCHHHHH-----CCCCCCCCCCHHH T ss_conf 797003835787-----5766698998462 No 304 >2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus} Probab=21.33 E-value=30 Score=14.02 Aligned_cols=13 Identities=0% Similarity=-0.220 Sum_probs=6.5 Q ss_pred CCCCCCCCCCEEC Q ss_conf 3838899896243 Q gi|254780820|r 45 QWVISSSDFHMKI 57 (284) Q Consensus 45 ~~VCp~C~~H~rl 57 (284) .+.|+.|+.-|.- T Consensus 57 ~~~C~~C~~~f~~ 69 (82) T 2kmk_A 57 PHKCQVCGKAFSQ 69 (82) T ss_dssp CEECTTTSCEESS T ss_pred CCCCCCCCCCCCC T ss_conf 9767888998488 No 305 >1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural genomics, JCSG, protein structure initiative, PSI; HET: NAP; 1.78A {Thermotoga maritima MSB8} SCOP: e.22.1.2 Probab=21.32 E-value=36 Score=13.49 Aligned_cols=120 Identities=21% Similarity=0.205 Sum_probs=63.8 Q ss_pred HHHCCCCCCCCCCCCCC---CCHHCCCCCCC-----CHHHHHHHHHHHCCCCCCEEEEEEEEECEEEEEEEEECHHHCCC Q ss_conf 98455654201334568---70201867642-----03566776664216677169998787041499999833031853 Q gi|254780820|r 64 KFLFDNAKYCLLDQPQV---CQDPLKFRDNK-----KYIDRLKENRSKTGLIDSIVSAVGNVRDFKLVAVVHEFSFIGGS 135 (284) Q Consensus 64 ~~l~D~gsf~Ei~~~~~---~~DPL~F~d~k-----~Y~drl~~a~~kTg~~davv~G~G~I~G~~vvv~~~df~F~GGS 135 (284) +++|.+|+..++...+. ...+|=..|.. ++.+++.+.-++.|.. +. .+ .+- T Consensus 23 ~i~fG~g~l~~l~~~l~~~g~kkvliVt~~~~~~~~g~~~~v~~~L~~~gi~--------------~~--~f-----~~v 81 (407) T 1vlj_A 23 KIVFGRGTIPKIGEEIKNAGIRKVLFLYGGGSIKKNGVYDQVVDSLKKHGIE--------------WV--EV-----SGV 81 (407) T ss_dssp EEEESTTCGGGHHHHHHHTTCCEEEEEECSSHHHHSSHHHHHHHHHHHTTCE--------------EE--EE-----CCC T ss_pred EEEECCCHHHHHHHHHHHCCCCEEEEEECCCHHHHCCHHHHHHHHHHHCCCE--------------EE--EE-----CCC T ss_conf 5998629999999999965998589998875788752999999999865993--------------99--98-----570 Q ss_pred CCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHH-------------HHCCCCEEEEECC Q ss_conf 577899999999999986289689997688877652124677778899999999-------------8629988998567 Q gi|254780820|r 136 IGIAAGEAIVKSCERAIAEKCPLVMFTASGGARMQEGILSLMQLPRTTIAINML-------------KDAGLPYIVVLTN 202 (284) Q Consensus 136 mG~~~geki~~a~e~A~~~~~PlI~~~~SGGaRMqEG~~sL~qMakt~~a~~~l-------------~~~~lP~I~vl~~ 202 (284) -..-.-+-+.++.+.+.+.+.-+|+= -+|| |-|-.+|..+++... ...++|+|+|-|- T Consensus 82 ~~~pt~~~v~~~~~~~~~~~~D~IIa-vGGG--------S~iD~AKaia~~~~~~~~~~~~~~~~~~~~~~lP~i~iPTt 152 (407) T 1vlj_A 82 KPNPVLSKVHEAVEVAKKEKVEAVLG-VGGG--------SVVDSAKAVAAGALYEGDIWDAFIGKYQIEKALPIFDVLTI 152 (407) T ss_dssp CSSCBHHHHHHHHHHHHHTTCSEEEE-EESH--------HHHHHHHHHHHHTTCSSCGGGGGGTSCCCCCCCCEEEEECS T ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEE-CCCC--------CHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCEEEECCC T ss_conf 79999999999999997459978995-4996--------34156888999875134047763366555778986675388 Q ss_pred CCCCEEEEEEC Q ss_conf 64201111201 Q gi|254780820|r 203 PTTGGVTASYA 213 (284) Q Consensus 203 pt~GGv~AS~a 213 (284) +.||.-..+++ T Consensus 153 agTgse~t~~a 163 (407) T 1vlj_A 153 SATGTEMNGNA 163 (407) T ss_dssp CSSCGGGSSEE T ss_pred CCCCHHHCCCE T ss_conf 86315426844 No 306 >1ad1_A DHPS, dihydropteroate synthetase; transferase, APO form, complex with OH-CH2-pterin-pyrophosphate; 2.20A {Staphylococcus aureus} SCOP: c.1.21.1 PDB: 1ad4_A* Probab=21.31 E-value=36 Score=13.49 Aligned_cols=125 Identities=13% Similarity=0.187 Sum_probs=68.5 Q ss_pred HHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCC-EEEE--EECCCCCE---E Q ss_conf 9999998628968999768887765212467777889999999986299889985676420-1111--20146852---5 Q gi|254780820|r 146 KSCERAIAEKCPLVMFTASGGARMQEGILSLMQLPRTTIAINMLKDAGLPYIVVLTNPTTG-GVTA--SYAMLGDI---H 219 (284) Q Consensus 146 ~a~e~A~~~~~PlI~~~~SGGaRMqEG~~sL~qMakt~~a~~~l~~~~lP~I~vl~~pt~G-Gv~A--S~a~lgDi---i 219 (284) ..++.+.+.++|+|+.-..+...-..-+..+. .--...+.++.++|++---++.||-.| |-+. ++..+-.+ . T Consensus 112 ~m~~~va~~~~~~ilmH~~~~~~~~~~~~~v~--~~~~~~~~~~~~~Gi~~~~IilDPGiGFgKt~~~n~~ll~~l~~~~ 189 (266) T 1ad1_A 112 RMFQVVAKYDAEIVLMHNGNGNRDEPVVEEML--TSLLAQAHQAKIAGIPSNKIWLDPGIGFAKTRNEEAEVMARLDELV 189 (266) T ss_dssp HHHHHHHHTTCEEEEECCCCTTCCSCHHHHHH--HHHHHHHHHHHHTTCCGGGEEEECCTTSSCCHHHHHHHHHCHHHHH T ss_pred HHHHHHHHCCCCEEEEECCCCCCCCCCHHHHH--HHHHHHHHHHHHCCCCHHCEEECCCCCCCCCCHHHHHHHHHHHHHH T ss_conf 28999971499868720786655431000133--5789999999975986313886476366767210499999799972 Q ss_pred -EEECCCEEECCCHHHHHHHHCCCC-CCCCH--H---HHHHHHCCC-CCEEECHHHHHHHHH Q ss_conf -553142110232788787636778-87202--1---599996898-353735899999999 Q gi|254780820|r 220 -LAEPGAEIGFAGRRVIEQTVREKL-PDGFQ--R---SEYLVEHGM-IDRIVHRHDIPEVVS 273 (284) Q Consensus 220 -iaep~a~igFaG~rVi~~t~~~~l-p~~fq--t---ae~l~~~G~-iD~iv~r~~l~~~i~ 273 (284) +.-| -++|.+=++.|.+.++.+. |++.. | +-+++.+|. |=.+=+=++.++.+. T Consensus 190 ~~~~P-iLvG~SRKsfi~~l~g~~~~~~~r~~~tla~~~~a~~~Ga~iiRvHDV~~~~~~~~ 250 (266) T 1ad1_A 190 ATEYP-VLLATSRKRFTKEMMGYDTTPVERDEVTAATTAYGIMKGVRAVRVHNVELNAKLAK 250 (266) T ss_dssp TTCSC-BEECCTTSHHHHTTSSSCCCGGGGHHHHHHHHHHHHHHTCCEEEESCHHHHHHHHH T ss_pred CCCCC-EEEEECHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHH T ss_conf 47986-79962478899997568998787428999999999987999999499799999999 No 307 >1w77_A 2C-methyl-D-erythritol 4-phosphate cytidylyltransferase; plantherbicide, non-mevalonate pathway, isoprenoid; HET: C5P; 2.00A {Arabidopsis thaliana} SCOP: c.68.1.13 Probab=21.26 E-value=34 Score=13.63 Aligned_cols=17 Identities=18% Similarity=0.360 Sum_probs=12.4 Q ss_pred CCCCCCCCHHHHHHHHC Q ss_conf 67788720215999968 Q gi|254780820|r 240 REKLPDGFQRSEYLVEH 256 (284) Q Consensus 240 ~~~lp~~fqtae~l~~~ 256 (284) +-.-|+|+-.||.+|++ T Consensus 210 kIttpeDL~~Ae~lL~~ 226 (228) T 1w77_A 210 KVTTPDDLLLAERILSE 226 (228) T ss_dssp CCCSHHHHHHHHHHHHC T ss_pred CCCCHHHHHHHHHHHHH T ss_conf 87999999999999861 No 308 >2i2w_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 1.95A {Escherichia coli} PDB: 2i22_A 1x94_A Probab=21.17 E-value=36 Score=13.47 Aligned_cols=64 Identities=23% Similarity=0.287 Sum_probs=39.2 Q ss_pred HHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCCEEEEEC Q ss_conf 99999999862896899976888776521246777788999999998629988998567642011112014685255531 Q gi|254780820|r 144 IVKSCERAIAEKCPLVMFTASGGARMQEGILSLMQLPRTTIAINMLKDAGLPYIVVLTNPTTGGVTASYAMLGDIHLAEP 223 (284) Q Consensus 144 i~~a~e~A~~~~~PlI~~~~SGGaRMqEG~~sL~qMakt~~a~~~l~~~~lP~I~vl~~pt~GGv~AS~a~lgDiiiaep 223 (284) +.+..+.-.+.+-=||+++.||.. +-+..|+..-++.|+++|++...+ ||.. +-++|+.|--| T Consensus 121 f~~ql~~~~~~gDvli~iS~SG~s------------~nvi~al~~Ak~~G~~ti~lTg~~--g~~l---~~~~Di~I~vp 183 (212) T 2i2w_A 121 FSRYVEAVGREGDVLLGISTSGNS------------ANVIKAIAAAREKGMKVITLTGKD--GGKM---AGTADIEIRVP 183 (212) T ss_dssp HHHHHHHHCCTTCEEEEECSSSCC------------HHHHHHHHHHHHHTCEEEEEEETT--CGGG---TTCSSEEEEEC T ss_pred HHHHHHHHCCCCCEEEEEECCCCC------------CCHHHHHHHHHHCCCEEEEEECCC--CCHH---HHHCCEEEECC T ss_conf 999999857898879998089998------------328999999998599899997788--7336---77399899869 Q ss_pred C Q ss_conf 4 Q gi|254780820|r 224 G 224 (284) Q Consensus 224 ~ 224 (284) . T Consensus 184 s 184 (212) T 2i2w_A 184 H 184 (212) T ss_dssp C T ss_pred C T ss_conf 9 No 309 >1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A Probab=21.13 E-value=26 Score=14.49 Aligned_cols=18 Identities=6% Similarity=0.012 Sum_probs=12.3 Q ss_pred CCCCCCCCCCEECCHHHH Q ss_conf 383889989624379999 Q gi|254780820|r 45 QWVISSSDFHMKIPAKER 62 (284) Q Consensus 45 ~~VCp~C~~H~rl~areR 62 (284) -|+|+.|+.-|.-+..-. T Consensus 2 p~~C~~C~k~F~~~~~L~ 19 (29) T 1ard_A 2 SFVCEVCTRAFARQEHLK 19 (29) T ss_dssp CCBCTTTCCBCSSHHHHH T ss_pred CCCCCCCCCCCCCHHHHC T ss_conf 836889879987705822 No 310 >2nys_A AGR_C_3712P; SSPB, stringent starvation protein B, NESG, ATR88, structural genomics, PSI-2, protein structure initiative; 2.70A {Agrobacterium tumefaciens str} SCOP: b.136.1.2 Probab=21.09 E-value=36 Score=13.46 Aligned_cols=29 Identities=17% Similarity=0.086 Sum_probs=20.4 Q ss_pred EEEEEECCCCCEEEEECCCEEECCCHHHH Q ss_conf 11112014685255531421102327887 Q gi|254780820|r 207 GVTASYAMLGDIHLAEPGAEIGFAGRRVI 235 (284) Q Consensus 207 Gv~AS~a~lgDiiiaep~a~igFaG~rVi 235 (284) .+++||+...--+..--.|.++|+-|-|= T Consensus 83 sf~lrF~Gvp~~l~IP~~AI~af~dpevg 111 (176) T 2nys_A 83 EIGLSFSDTPEKLVIPYNAIRGFYDPSVN 111 (176) T ss_dssp EEEEEETTEEEEEEEEGGGEEEEEEGGGT T ss_pred EEEEEECCEEEEEEEEHHHEEEEECCCCC T ss_conf 99999899607999875780165676778 No 311 >3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* Probab=20.73 E-value=2.7 Score=21.80 Aligned_cols=32 Identities=9% Similarity=0.286 Sum_probs=23.0 Q ss_pred EECCCCCCE---EEHHHHHHHCCCCCCCCCCEECCH Q ss_conf 056676872---217889863383889989624379 Q gi|254780820|r 27 VKCPETGAM---VYHKDLKENQWVISSSDFHMKIPA 59 (284) Q Consensus 27 ~kCp~C~~~---i~~~~l~~n~~VCp~C~~H~rl~a 59 (284) ..|.+|+.. ++.++-. ...+|..||-++++.- T Consensus 8 ~~C~NC~t~~TpLWRR~~~-G~~lCNACGLy~klhg 42 (63) T 3dfx_A 8 TSCANCQTTTTTLWRRNAN-GDPVCNACGLYYKLHN 42 (63) T ss_dssp CCCTTTCCSCCSSCCCCTT-SCCCCHHHHHHHHHHS T ss_pred CCCCCCCCCCCCEEEECCC-CCEEEEHHHHHHHHHC T ss_conf 7456889865420658899-8982114577899848 No 312 >1ryq_A DNA-directed RNA polymerase, subunit E''; structural genomics, zinc, PSI, protein structure initiative; 1.38A {Pyrococcus furiosus} SCOP: g.41.9.3 Probab=20.54 E-value=20 Score=15.27 Aligned_cols=20 Identities=5% Similarity=-0.092 Sum_probs=14.9 Q ss_pred EECCCCCCEEEHHHHHHHCCCCCCCCC Q ss_conf 056676872217889863383889989 Q gi|254780820|r 27 VKCPETGAMVYHKDLKENQWVISSSDF 53 (284) Q Consensus 27 ~kCp~C~~~i~~~~l~~n~~VCp~C~~ 53 (284) .-|-+|+-++-. .+||+|+- T Consensus 12 rAC~~C~~i~~~-------~~CPnCgs 31 (69) T 1ryq_A 12 KACRHCHYITSE-------DRCPVCGS 31 (69) T ss_dssp EEETTTCBEESS-------SSCTTTCC T ss_pred HHHHHCCCCCCC-------CCCCCCCC T ss_conf 347519876579-------97979849 No 313 >2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A Probab=20.33 E-value=21 Score=15.19 Aligned_cols=12 Identities=0% Similarity=0.277 Sum_probs=8.3 Q ss_pred CCCCCCCCCCEE Q ss_conf 383889989624 Q gi|254780820|r 45 QWVISSSDFHMK 56 (284) Q Consensus 45 ~~VCp~C~~H~r 56 (284) -+.||+|.|..+ T Consensus 3 d~~cpkc~y~ap 14 (28) T 2jvx_A 3 DFCCPKCQYQAP 14 (28) T ss_dssp CEECTTSSCEES T ss_pred CCCCCCCCCCCC T ss_conf 643773012389 No 314 >3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 3m99_A Probab=20.30 E-value=15 Score=16.27 Aligned_cols=27 Identities=11% Similarity=0.107 Sum_probs=19.1 Q ss_pred CEECCCCCCEEEHHHHHHHCCCCCCCCCCEEC Q ss_conf 10566768722178898633838899896243 Q gi|254780820|r 26 WVKCPETGAMVYHKDLKENQWVISSSDFHMKI 57 (284) Q Consensus 26 W~kCp~C~~~i~~~~l~~n~~VCp~C~~H~rl 57 (284) ..+|..|+... ..|+|+|-.|||-..- T Consensus 48 ~~~C~~c~~~~-----~~~l~~CL~Cg~~gcg 74 (476) T 3mhs_A 48 TMKCGTCHEIN-----SGATFMCLQCGFCGCW 74 (476) T ss_dssp HSBCTTTCCBC-----SSSEEEESSSSCEEET T ss_pred CCCCCCCCCCC-----CCCEEEECCCCCCCCC T ss_conf 87478777888-----9955997589987669 No 315 >1o1x_A Ribose-5-phosphate isomerase RPIB; TM1080, structural genomics, JCSG, PSI, protein structure initiative; 1.90A {Thermotoga maritima} SCOP: c.121.1.1 Probab=20.23 E-value=19 Score=15.57 Aligned_cols=53 Identities=8% Similarity=0.160 Sum_probs=22.3 Q ss_pred CCCCCCCCCCCCCHHCCCCCCCCHHHHHHHHHHHCCCCCC-EEEEEE--------EEECEEEEEE Q ss_conf 5420133456870201867642035667766642166771-699987--------8704149999 Q gi|254780820|r 70 AKYCLLDQPQVCQDPLKFRDNKKYIDRLKENRSKTGLIDS-IVSAVG--------NVRDFKLVAV 125 (284) Q Consensus 70 gsf~Ei~~~~~~~DPL~F~d~k~Y~drl~~a~~kTg~~da-vv~G~G--------~I~G~~vvv~ 125 (284) ..|+-+|....+.|+..|+ .|..++..+..+.-.+-+ ++||+| ++.|++++++ T Consensus 37 ~g~ev~D~G~~~~~~~DYp---d~a~~va~~V~~~~~~~GIliCGtG~G~sIaANK~~GIRAal~ 98 (155) T 1o1x_A 37 KGIEVEDHGTYSEESVDYP---DYAKKVVQSILSNEADFGILLCGTGLGMSIAANRYRGIRAALC 98 (155) T ss_dssp TTCEEEECCCCSSSCCCHH---HHHHHHHHHHHTTSCSEEEEEESSSHHHHHHHTTSTTCCEEEC T ss_pred CCCEEEECCCCCCCCCCCH---HHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHCCCCEEEEEE T ss_conf 7998997899987777831---7899999997347763479964898799999736898599996 No 316 >2hmc_A AGR_L_411P, dihydrodipicolinate synthase; alpha-beta barrel (TIM barrel), structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Agrobacterium tumefaciens str} Probab=20.23 E-value=37 Score=13.33 Aligned_cols=18 Identities=22% Similarity=0.412 Sum_probs=11.4 Q ss_pred HHHHHHHHHHCCCEEEEE Q ss_conf 999999986289689997 Q gi|254780820|r 145 VKSCERAIAEKCPLVMFT 162 (284) Q Consensus 145 ~~a~e~A~~~~~PlI~~~ 162 (284) .+.++.+++.++|+|.=+ T Consensus 82 ~~l~~~~v~~rvpvi~Gv 99 (344) T 2hmc_A 82 MEGVERLVKAGIPVIVGT 99 (344) T ss_dssp HHHHHHHHHTTCCEEEEC T ss_pred HHHHHHHHHCCCCEEEEC T ss_conf 999999973388689967 Done!