254780821
FolC bifunctional protein
GeneID in NCBI database: | 8209827 | Locus tag: | CLIBASIA_03560 |
Protein GI in NCBI database: | 254780821 | Protein Accession: | YP_003065234.1 |
Gene range: | -(434017, 435306) | Protein Length: | 429aa |
Gene description: | FolC bifunctional protein | ||
COG prediction: | [H] Folylpolyglutamate synthase | ||
KEGG prediction: | folC; FolC bifunctional protein; K11754 dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17] | ||
SEED prediction: | Dihydrofolate synthase (EC 6.3.2.12) / Folylpolyglutamate synthase (EC 6.3.2.17) | ||
Pathway involved in KEGG: | Folate biosynthesis [PATH:las00790] | ||
Subsystem involved in SEED: | - none - | ||
sequence | sequence profile |
Prediction of Local Sequence Properties
Source | Summary | Result |
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Close Homologs Detected by BLAST or PSI-BLAST
Homolog within the Genome Detected by BLAST
Original result of BLAST against C. L. asiaticus genome
Identity | Alignment graph | Length | Definition | E-value | |
Target | 429 | FolC bifunctional protein [Candidatus Liberibacter asia | |||
254781102 | 497 | UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diamin | 0.021 |
>gi|254781102|ref|YP_003065515.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Candidatus Liberibacter asiaticus str. psy62] Length = 497 | Back alignment |
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Score = 32.0 bits (71), Expect = 0.021, Method: Compositional matrix adjust. Identities = 14/27 (51%), Positives = 21/27 (77%) Query: 26 VIHIGGTNGKGSVASFSQRLLETSGLS 52 ++ + GT+GK SVASF Q++ + SGLS Sbjct: 117 ILAVTGTSGKSSVASFVQQICQRSGLS 143 |
Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations
Original result of PSI-BLAST first 2 iterations
Identity | Alignment graph | Length | Definition | Round | E-value |
Target | 429 | FolC bifunctional protein [Candidatus Liberibacter asia | |||
315122044 | 429 | FolC bifunctional protein [Candidatus Liberibacter sola | 1 | 1e-167 | |
116249790 | 450 | FolC bifunctional protein [Includes: folylpolyglutamate | 1 | 1e-106 | |
325291474 | 459 | Folylpolyglutamate synthase [Agrobacterium sp. H13-3] L | 1 | 1e-106 | |
15887380 | 447 | folylpolyglutamate synthase [Agrobacterium tumefaciens | 1 | 1e-106 | |
222084225 | 431 | folylpolyglutamate synthase/dihydrofolate syntase bifun | 1 | 1e-105 | |
153008150 | 430 | FolC bifunctional protein [Ochrobactrum anthropi ATCC 4 | 1 | 1e-105 | |
327191170 | 450 | folC [Rhizobium etli CNPAF512] Length = 450 | 1 | 1e-105 | |
222147036 | 470 | folylpolyglutamate synthase [Agrobacterium vitis S4] Le | 1 | 1e-105 | |
190889664 | 450 | folC [Rhizobium etli CIAT 652] Length = 450 | 1 | 1e-104 | |
227823891 | 447 | FolC bifunctional protein [Sinorhizobium fredii NGR234] | 1 | 1e-104 |
>gi|315122044|ref|YP_004062533.1| FolC bifunctional protein [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 429 | Back alignment and organism information |
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Score = 593 bits (1530), Expect = e-167, Method: Compositional matrix adjust. Identities = 295/426 (69%), Positives = 348/426 (81%) Query: 1 MAADSLLKMGYLLEDLGRPQDRLPPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPH 60 M SL ++ LLEDLG+PQ+ +PPVIHIGGTNGKGSVASF QRLLETSGLSVHVHTSPH Sbjct: 1 MTFFSLQRIKCLLEDLGKPQNNIPPVIHIGGTNGKGSVASFIQRLLETSGLSVHVHTSPH 60 Query: 61 LIRWNERFRLGVKGGRGRLVEDVELLDVFRRVRRVKSAQNLTIFELSIATALVLFSKYPA 120 LIRWNERFRLGVKGG G+LVED +LD FRRV + + +++++FE S+ATA VLF++YPA Sbjct: 61 LIRWNERFRLGVKGGGGKLVEDAIVLDTFRRVIQTNNDRDISVFEASVATAFVLFAEYPA 120 Query: 121 DCAIIEVGLGGSLDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGIIKPGCPVV 180 D AIIEVGLGG DATNIIEK AVSVITSISLDHEK LG TV IAK+K+ I+K GCPVV Sbjct: 121 DVAIIEVGLGGRFDATNIIEKTAVSVITSISLDHEKYLGKTVDLIAKEKAAIMKSGCPVV 180 Query: 181 IGHQVYDEVREILVSKAEKMGCPYNVYGDDFYAFEKNKCLVYQDKISQTNLTVLGLVGEH 240 IGHQ YDE R++LVSKA+KMGC Y VYGDDFYAF KN+ LVYQDK SQ N + L+GEH Sbjct: 181 IGHQSYDEARDVLVSKAQKMGCTYRVYGDDFYAFRKNRHLVYQDKSSQINCSTPNLLGEH 240 Query: 241 QYINAATAICAVQMAGFTLEKECINAALQSVQWFGRLQKITEGPLLNKLPDHSEVWIDGG 300 QY NAATAICAVQ AGF LEK+C+N ALQSV W GRLQKIT+G LLN+LP++SE+WIDGG Sbjct: 241 QYFNAATAICAVQTAGFKLEKDCVNIALQSVNWLGRLQKITQGFLLNELPNYSELWIDGG 300 Query: 301 HNPNAGLVVSKEISKLKGSSNKPFYLVIGMVEGKKYGRYLEAFVELSPIVLSVSLICRGR 360 HNP+AGLV+++EISKLK K FYLVIGM+ K Y YL+AFV LSPIVL+V ++C+G Sbjct: 301 HNPDAGLVIAREISKLKELDTKTFYLVIGMLADKDYEGYLKAFVGLSPIVLTVPIMCKGH 360 Query: 361 ERQSISITPKVLMQEAKKLGFQAMACSSMIEALSRVRKINEELPPPLILIAGSLYLAGEA 420 E SI P++LMQ AKKLG A ACSS+ E+L +V+ N+ LPP ++LI GSLYLAGEA Sbjct: 361 ESIPESINPQILMQGAKKLGLTAFACSSLTESLVKVKNTNKNLPPAIVLIGGSLYLAGEA 420 Query: 421 LRENGV 426 L +NG Sbjct: 421 LYKNGT 426 |
Species: Candidatus Liberibacter solanacearum Genus: Candidatus Liberibacter Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
>gi|116249790|ref|YP_765628.1| FolC bifunctional protein [Includes: folylpolyglutamate synthase (Folylpoly-gamma-glutamate synthetase) (FPGS); dihydrofolate synthase] [Rhizobium leguminosarum bv. viciae 3841] Length = 450 | Back alignment and organism information |
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Score = 389 bits (999), Expect = e-106, Method: Compositional matrix adjust. Identities = 204/423 (48%), Positives = 278/423 (65%), Gaps = 6/423 (1%) Query: 5 SLLKMGYLLEDLGRPQDRLPPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRW 64 SL ++ LL+ LG P +LPPVIH+ GTNGKGSV +F + LLE G S HVHTSPHL+ W Sbjct: 30 SLDRITRLLDVLGNPHRKLPPVIHVAGTNGKGSVTAFCRALLEAGGYSAHVHTSPHLVNW 89 Query: 65 NERFRLGVKGGRGRLVEDVELLDVFRRVRRVKSAQNLTIFELSIATALVLFSKYPADCAI 124 +ER+R+GVKGGRG+LV+D + RRV + Q++T+FE+ A +LFS++PAD AI Sbjct: 90 HERYRIGVKGGRGQLVDDAVFAEAVRRVADANAGQHITVFEILTAVTFILFSEHPADAAI 149 Query: 125 IEVGLGGSLDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGIIKPGCPVVIGHQ 184 IEVGLGG DATN+I AVSVI ISLDH+ LG+ V IA +K+GI+KPG PVVIGHQ Sbjct: 150 IEVGLGGRFDATNVISDPAVSVIMPISLDHQPYLGDRVELIAAEKAGIMKPGFPVVIGHQ 209 Query: 185 VYDEVREILVSKAEKMGCPYNVYGDDFYAFEKNKCLVYQDKISQTNLTVLGLVGEHQYIN 244 YD ++L+S AE++ CP V+G DF A E+ LVYQD+ +L + L G HQY N Sbjct: 210 EYDAALDVLMSTAERLHCPSAVFGQDFMAHEEYGRLVYQDEFGLADLPLPRLPGRHQYAN 269 Query: 245 AATAICAVQMAGFTLEKECINAALQSVQWFGRLQKITEGPLLNKLPDHSEVWIDGGHNPN 304 AA AI AV+ AGFT+ + + A+ SV+W GRLQ+++EG LL+ P +E+WIDGGHNP Sbjct: 270 AAAAIRAVKAAGFTVTETMMEKAMSSVEWPGRLQRLSEGRLLSHAPAGAEIWIDGGHNPG 329 Query: 305 AGLVVSKEISKLKGSSNKPFYLVIGMVEGKKYGRYLEAFVELSPIVLSVSLICRGRERQS 364 AG V+++ ++ + ++P +L+IGM+ K Y +AF L V V + RG E Sbjct: 330 AGEVIAEAMANFEERQSRPLFLIIGMINTKDPVGYFKAFAGLVEKVFCVPI--RGSEAM- 386 Query: 365 ISITPKVLMQEAKKLGFQAMACSSMIEALSRVRKI-NEELPPPLILIAGSLYLAGEALRE 423 I P +L A G A S++ +AL ++ + + E PP IL+ GSLYL G+ L + Sbjct: 387 --IDPVILSNAAYDAGLVAEPMSTVGDALEAIKAVADPEALPPRILVGGSLYLVGDVLAD 444 Query: 424 NGV 426 NG Sbjct: 445 NGT 447 |
Species: Rhizobium leguminosarum Genus: Rhizobium Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
>gi|325291474|ref|YP_004277338.1| Folylpolyglutamate synthase [Agrobacterium sp. H13-3] Length = 459 | Back alignment and organism information |
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Score = 388 bits (997), Expect = e-106, Method: Compositional matrix adjust. Identities = 201/423 (47%), Positives = 272/423 (64%), Gaps = 6/423 (1%) Query: 5 SLLKMGYLLEDLGRPQDRLPPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRW 64 SL ++ LLE LG PQ RLPPVIH+ GTNGKGSV +F + LLE +GLSVHVHTSPHL+ W Sbjct: 39 SLDRISRLLEKLGSPQKRLPPVIHVAGTNGKGSVTAFCRALLEAAGLSVHVHTSPHLVNW 98 Query: 65 NERFRLGVKGGRGRLVEDVELLDVFRRVRRVKSAQNLTIFELSIATALVLFSKYPADCAI 124 +ER+R+GV G +GR V+D D RR+ Q +T+FE+ A +LF+++PAD A+ Sbjct: 99 HERYRIGVSGEKGRYVDDAVFADALRRIEAANGGQMITVFEILTAAMFLLFAEHPADAAV 158 Query: 125 IEVGLGGSLDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGIIKPGCPVVIGHQ 184 +EVGLGG DATN+I AVSVI ISLDH+ LG+ V IA +K+GI+K G PVVIGHQ Sbjct: 159 VEVGLGGRFDATNVINNPAVSVIMPISLDHQAYLGDRVELIAAEKAGIMKSGFPVVIGHQ 218 Query: 185 VYDEVREILVSKAEKMGCPYNVYGDDFYAFEKNKCLVYQDKISQTNLTVLGLVGEHQYIN 244 YD + LVS AE++GCP +VYG DF A E+ +VYQD+ T+ + L G HQ N Sbjct: 219 QYDAALDTLVSTAERLGCPASVYGQDFSAHEEFGRMVYQDEFGLTDAPLPRLPGRHQLAN 278 Query: 245 AATAICAVQMAGFTLEKECINAALQSVQWFGRLQKITEGPLLNKLPDHSEVWIDGGHNPN 304 AA AI AV+ AGF + + I A+ +V+W GRLQ++ G + P +E+WIDGGHNP Sbjct: 279 AAAAIRAVKAAGFEVTERMIEKAMTTVEWPGRLQRVLTGKIAEIAPKDAEIWIDGGHNPG 338 Query: 305 AGLVVSKEISKLKGSSNKPFYLVIGMVEGKKYGRYLEAFVELSPIVLSVSLICRGRERQS 364 AG V+++ ++ + + +P +++ GM+ K Y +AF +++ V +V + Sbjct: 339 AGEVIAEAMAGFEEKTPRPLFIIAGMINTKDPVGYFKAFADIAEYVFTVPI-----GGTD 393 Query: 365 ISITPKVLMQEAKKLGFQAMACSSMIEALSRV-RKINEELPPPLILIAGSLYLAGEALRE 423 +I P VL A G A SS+ EAL + R+ + E PPP ILI GSLYLAG AL Sbjct: 394 AAIDPVVLAHAAFDAGLVAAPTSSLTEALDELSRRFDPEGPPPRILIGGSLYLAGNALAL 453 Query: 424 NGV 426 NG Sbjct: 454 NGT 456 |
Species: Agrobacterium sp. H13-3 Genus: Agrobacterium Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
>gi|15887380|ref|NP_353061.1| folylpolyglutamate synthase [Agrobacterium tumefaciens str. C58] Length = 447 | Back alignment and organism information |
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Score = 388 bits (997), Expect = e-106, Method: Compositional matrix adjust. Identities = 202/423 (47%), Positives = 271/423 (64%), Gaps = 6/423 (1%) Query: 5 SLLKMGYLLEDLGRPQDRLPPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRW 64 SL ++ LLE LG PQ+R+PPVIH+ GTNGKGSV++F + LLE +GL VHVHT PHL+ W Sbjct: 27 SLDRISRLLEKLGNPQNRMPPVIHVAGTNGKGSVSAFCRALLEAAGLPVHVHTKPHLVNW 86 Query: 65 NERFRLGVKGGRGRLVEDVELLDVFRRVRRVKSAQNLTIFELSIATALVLFSKYPADCAI 124 +ER+RLGV G RGR VED D RR+ Q +T+FE+ A +LFS++PAD AI Sbjct: 87 HERYRLGVAGERGRFVEDAVFADALRRIEVANDGQKITVFEILTAVMFLLFSEHPADAAI 146 Query: 125 IEVGLGGSLDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGIIKPGCPVVIGHQ 184 +EVGLGG DATN+I AVS+I ISLDHE LG+ V IA +K+GI+K G PVVIGHQ Sbjct: 147 VEVGLGGRFDATNVINSPAVSIIMPISLDHEAYLGDRVELIAAEKAGIMKKGSPVVIGHQ 206 Query: 185 VYDEVREILVSKAEKMGCPYNVYGDDFYAFEKNKCLVYQDKISQTNLTVLGLVGEHQYIN 244 YD RE LV+ AE++GC +VYG DF A E+ +VYQD+ + + L G HQ N Sbjct: 207 EYDAARETLVATAERLGCLVSVYGQDFSAHEEFGRMVYQDEFGLADAPLPRLPGRHQLAN 266 Query: 245 AATAICAVQMAGFTLEKECINAALQSVQWFGRLQKITEGPLLNKLPDHSEVWIDGGHNPN 304 AA AI AV+ AGF + + I A+ SV+W GRLQ+I G + P +E+WIDGGHNP Sbjct: 267 AAAAIRAVKAAGFEVTERMIEKAMTSVEWPGRLQRILTGKIAEIAPKGAEIWIDGGHNPG 326 Query: 305 AGLVVSKEISKLKGSSNKPFYLVIGMVEGKKYGRYLEAFVELSPIVLSVSLICRGRERQS 364 AG V+++ ++ + + +P +++ GM+ K Y +AF +++ V +V + Sbjct: 327 AGEVIAEAMAGFEEKTPRPLFIIAGMINTKDPVGYFKAFADIAEYVFTVPI-----GGTD 381 Query: 365 ISITPKVLMQEAKKLGFQAMACSSMIEALSRV-RKINEELPPPLILIAGSLYLAGEALRE 423 +I P VL A G A S++ AL + R+++ E PPP ILI GSLYLAG AL Sbjct: 382 AAIDPVVLAHAAFDAGLVAAPTSTLTHALEELSRRVDPEGPPPRILIGGSLYLAGNALAF 441 Query: 424 NGV 426 NG Sbjct: 442 NGT 444 |
Species: Agrobacterium tumefaciens Genus: Agrobacterium Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
>gi|222084225|ref|YP_002542751.1| folylpolyglutamate synthase/dihydrofolate syntase bifunctional protein [Agrobacterium radiobacter K84] Length = 431 | Back alignment and organism information |
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Score = 386 bits (992), Expect = e-105, Method: Compositional matrix adjust. Identities = 203/423 (47%), Positives = 277/423 (65%), Gaps = 6/423 (1%) Query: 5 SLLKMGYLLEDLGRPQDRLPPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRW 64 SL ++ LL+ LG PQ++LPPVIH+ GTNGKGSV +F + LLE G SVHVHTSPHL+ W Sbjct: 11 SLDRITRLLDILGNPQNKLPPVIHVAGTNGKGSVTAFCRALLEAGGYSVHVHTSPHLVNW 70 Query: 65 NERFRLGVKGGRGRLVEDVELLDVFRRVRRVKSAQNLTIFELSIATALVLFSKYPADCAI 124 +ER+R+GVKGGRG LV D +V RR+ + +T+FE+ A LF+++PAD A+ Sbjct: 71 HERYRIGVKGGRGELVADAVFAEVLRRIADANGGEKITVFEILTAATFTLFAEHPADAAV 130 Query: 125 IEVGLGGSLDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGIIKPGCPVVIGHQ 184 IEVGLGG DATN+I + AVSVI ISLDH+ LG+ V IA +K+GI+K G PVVIGHQ Sbjct: 131 IEVGLGGRFDATNVISEPAVSVIMPISLDHQPYLGDRVELIAAEKAGIMKAGRPVVIGHQ 190 Query: 185 VYDEVREILVSKAEKMGCPYNVYGDDFYAFEKNKCLVYQDKISQTNLTVLGLVGEHQYIN 244 YD ++L+S AE++ CP V+G DF A E+ LVYQD+ +L + L G HQY N Sbjct: 191 DYDAALDVLISTAERLRCPTAVFGQDFSAHEEYGRLVYQDEFGLGDLPLPRLPGRHQYAN 250 Query: 245 AATAICAVQMAGFTLEKECINAALQSVQWFGRLQKITEGPLLNKLPDHSEVWIDGGHNPN 304 AA AI AV+ AGFT+ + + A+ SV+W GRLQ++TEG LL P+ +E+W+DGGHNP Sbjct: 251 AAAAIRAVKAAGFTVTEAMMEKAMISVEWPGRLQRLTEGELLPHAPEGAEIWVDGGHNPG 310 Query: 305 AGLVVSKEISKLKGSSNKPFYLVIGMVEGKKYGRYLEAFVELSPIVLSVSLICRGRERQS 364 AG V+++ ++ + +P +L+IGM+ K Y +AF L+ V V + RG E Sbjct: 311 AGEVIAEAMASFEERQPRPLFLIIGMINTKDPVGYFKAFTGLAEKVYCVPI--RGSEAM- 367 Query: 365 ISITPKVLMQEAKKLGFQAMACSSMIEALSRVRKIN-EELPPPLILIAGSLYLAGEALRE 423 I P +L A G A S++ +AL +R++ +P P ILI GSLYL G+ L + Sbjct: 368 --IDPVILANSAYDAGLVAEPMSTVRQALDEIRELAVPNMPAPRILIGGSLYLVGDVLAD 425 Query: 424 NGV 426 NG Sbjct: 426 NGT 428 |
Species: Agrobacterium tumefaciens Genus: Agrobacterium Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
>gi|153008150|ref|YP_001369365.1| FolC bifunctional protein [Ochrobactrum anthropi ATCC 49188] Length = 430 | Back alignment and organism information |
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Score = 386 bits (991), Expect = e-105, Method: Compositional matrix adjust. Identities = 198/423 (46%), Positives = 266/423 (62%), Gaps = 7/423 (1%) Query: 5 SLLKMGYLLEDLGRPQDRLPPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRW 64 SL ++ LLE LG P +LPPVIHI GTNGKGS +F + LLE G VHVHTSPHL+ W Sbjct: 11 SLDRIRGLLEKLGNPHLKLPPVIHIAGTNGKGSATAFCRALLEAGGFDVHVHTSPHLVHW 70 Query: 65 NERFRLGVKGGRGRLVEDVELLDVFRRVRRVKSAQNLTIFELSIATALVLFSKYPADCAI 124 +ER+RL GG GRLV D L D RV Q++T+FE+ A A VLFS++PAD + Sbjct: 71 HERYRLAAPGG-GRLVSDDVLADAIERVAAANGGQHITVFEILTAVAFVLFSEHPADVVV 129 Query: 125 IEVGLGGSLDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGIIKPGCPVVIGHQ 184 +EVGLGG DATN+I + AVS+I +S+DH+ LG+ V IA +K+GIIK CPVV+G Q Sbjct: 130 MEVGLGGRFDATNVIAEPAVSLIMPVSIDHQAYLGDRVELIAAEKAGIIKKDCPVVVGFQ 189 Query: 185 VYDEVREILVSKAEKMGCPYNVYGDDFYAFEKNKCLVYQDKISQTNLTVLGLVGEHQYIN 244 +D RE+LVS A+++GCP +VYG DF AFE++ +V+Q++ +L + L G HQ N Sbjct: 190 PFDAAREVLVSTADRLGCPVSVYGQDFLAFEEHGRMVFQNEDGLIDLPLPRLPGRHQISN 249 Query: 245 AATAICAVQMAGFTLEKECINAALQSVQWFGRLQKITEGPLLNKLPDHSEVWIDGGHNPN 304 AA AI AVQMAGF+L + + AL V W R+Q++T G L++ P SE+W+DGGHNP Sbjct: 250 AAAAIEAVQMAGFSLTDKAVEKALMVVDWPARMQRLTHGALVDMAPAASEIWLDGGHNPG 309 Query: 305 AGLVVSKEISKLKGSSNKPFYLVIGMVEGKKYGRYLEAFVELSPIVLSVSLICRGRERQS 364 AG V+++ + L+ + +P +L+ GM+ K Y EAF ++ V +V + Sbjct: 310 AGAVIAEALGDLEERNERPLFLITGMINTKDPVGYFEAFAGMARHVFTVPV-----PSSD 364 Query: 365 ISITPKVLMQEAKKLGFQAMACSSMIEALSRVRKI-NEELPPPLILIAGSLYLAGEALRE 423 I L A+K A S+ AL +R + PP ILI GSLYLAGE LRE Sbjct: 365 AGIPNDELAVAAQKANLSAEPVHSVANALKLLRGTWPPDEAPPRILIGGSLYLAGEVLRE 424 Query: 424 NGV 426 NG Sbjct: 425 NGT 427 |
Species: Ochrobactrum anthropi Genus: Ochrobactrum Family: Brucellaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
>gi|327191170|gb|EGE58213.1| folC [Rhizobium etli CNPAF512] Length = 450 | Back alignment and organism information |
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Score = 385 bits (990), Expect = e-105, Method: Compositional matrix adjust. Identities = 201/423 (47%), Positives = 275/423 (65%), Gaps = 6/423 (1%) Query: 5 SLLKMGYLLEDLGRPQDRLPPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRW 64 SL ++ LL+ LG P +LPPVIH+ GTNGKGSV +F + LLE G S HVHTSPHL+ W Sbjct: 30 SLDRITRLLDHLGNPHRKLPPVIHVAGTNGKGSVTAFCRALLEAGGYSAHVHTSPHLVNW 89 Query: 65 NERFRLGVKGGRGRLVEDVELLDVFRRVRRVKSAQNLTIFELSIATALVLFSKYPADCAI 124 +ER+R+GV GGRG+LV+D D RRV + Q++T+FE+ A +LFS+ PAD AI Sbjct: 90 HERYRIGVAGGRGQLVDDAVFADAVRRVAEANAGQHITVFEILTAVTFILFSEQPADAAI 149 Query: 125 IEVGLGGSLDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGIIKPGCPVVIGHQ 184 IEVGLGG DATN+I AVSVI ISLDH+ LG+ V IA +K+GI+KPG PVVIGHQ Sbjct: 150 IEVGLGGRFDATNVISDPAVSVIMPISLDHQPYLGDRVELIAAEKAGIMKPGLPVVIGHQ 209 Query: 185 VYDEVREILVSKAEKMGCPYNVYGDDFYAFEKNKCLVYQDKISQTNLTVLGLVGEHQYIN 244 YD ++L+S AE++ CP V+G DF A E+ LVYQD+ +L + L G HQY N Sbjct: 210 EYDAALDVLMSTAERLHCPSAVFGQDFMAHEEYGRLVYQDEYGLADLPLPRLPGRHQYAN 269 Query: 245 AATAICAVQMAGFTLEKECINAALQSVQWFGRLQKITEGPLLNKLPDHSEVWIDGGHNPN 304 AA AI AV+ AGFT+ + + A+ SV+W GRLQ++++G LL P +E+W+DGGHNP Sbjct: 270 AAAAIRAVKAAGFTVTETMMEKAMNSVEWPGRLQRLSDGRLLQHAPAGAEIWVDGGHNPG 329 Query: 305 AGLVVSKEISKLKGSSNKPFYLVIGMVEGKKYGRYLEAFVELSPIVLSVSLICRGRERQS 364 AG V+++ ++ + ++P +L+IGM+ K Y +AF L V V + RG + Sbjct: 330 AGEVIAEAMANFEERQSRPLFLIIGMINTKDPVGYFKAFAGLVEKVFCVPI--RGSDAM- 386 Query: 365 ISITPKVLMQEAKKLGFQAMACSSMIEALSRVRKINE-ELPPPLILIAGSLYLAGEALRE 423 I P +L A G A S++ EAL ++ + + + PP IL+ GSLYL G+ L + Sbjct: 387 --IDPVILSNAAYDAGLVAEPMSTVGEALEAIKAVTDPQALPPRILVGGSLYLVGDVLSD 444 Query: 424 NGV 426 NG Sbjct: 445 NGT 447 |
Species: Rhizobium etli Genus: Rhizobium Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
>gi|222147036|ref|YP_002547993.1| folylpolyglutamate synthase [Agrobacterium vitis S4] Length = 470 | Back alignment and organism information |
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Score = 385 bits (990), Expect = e-105, Method: Compositional matrix adjust. Identities = 202/423 (47%), Positives = 282/423 (66%), Gaps = 6/423 (1%) Query: 5 SLLKMGYLLEDLGRPQDRLPPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRW 64 +L +M LLE LG PQD+LPPVIH+ GTNGKGSV++FS+ LLE GL+VHVHTSPHL+ W Sbjct: 50 TLERMRRLLEVLGNPQDKLPPVIHVAGTNGKGSVSAFSRALLEAGGLAVHVHTSPHLVNW 109 Query: 65 NERFRLGVKGGRGRLVEDVELLDVFRRVRRVKSAQNLTIFELSIATALVLFSKYPADCAI 124 +ER+R+GVKGG+G++V+D L D RRV + Q++T+FE+ A A +LFS+ PAD I Sbjct: 110 HERYRIGVKGGKGQIVDDGSLADALRRVAVANAGQHITVFEILTAAAFLLFSEIPADAVI 169 Query: 125 IEVGLGGSLDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGIIKPGCPVVIGHQ 184 +EVG+GG LD TN++++ AVSVI IS DH+ LG+ V IA +K+GI+K PVVIGHQ Sbjct: 170 MEVGMGGRLDCTNVVDRPAVSVIMPISFDHQAYLGDRVELIAAEKAGIMKRRRPVVIGHQ 229 Query: 185 VYDEVREILVSKAEKMGCPYNVYGDDFYAFEKNKCLVYQDKISQTNLTVLGLVGEHQYIN 244 + RE LV AE++GCP +V+G D+ AFE++ LVYQD+ +L + L G HQ+ N Sbjct: 230 EFAAAREALVDIAERLGCPLSVFGQDYLAFEEHGRLVYQDESGLMDLPLPKLPGRHQFAN 289 Query: 245 AATAICAVQMAGFTLEKECINAALQSVQWFGRLQKITEGPLLNKLPDHSEVWIDGGHNPN 304 AA AI AV+ AGFT+ + A+ SV+W GRLQK+TEG LL P +E+W+DGGHNP Sbjct: 290 AAAAIRAVRSAGFTVTEAMAETAMYSVEWPGRLQKLTEGALLAHAPKGAEIWVDGGHNPG 349 Query: 305 AGLVVSKEISKLKGSSNKPFYLVIGMVEGKKYGRYLEAFVELSPIVLSVSLICRGRERQS 364 AG V+++ ++ + ++P YL+ GM+ K Y +AF L+ + + ++ RG + Sbjct: 350 AGEVIAEAMAGFEERQSRPLYLITGMLNTKDPLGYFKAFEGLA--IQAFTVPIRGTD--- 404 Query: 365 ISITPKVLMQEAKKLGFQAMACSSMIEALSRV-RKINEELPPPLILIAGSLYLAGEALRE 423 ++ P L A G A SS+ EAL + ++N E P ILI GSLY+ G L + Sbjct: 405 AALDPVALASSAYDAGIPAEPVSSVAEALEAICSRVNAEEIAPRILIGGSLYVVGNVLSD 464 Query: 424 NGV 426 NG Sbjct: 465 NGT 467 |
Species: Agrobacterium vitis Genus: Agrobacterium Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
>gi|190889664|ref|YP_001976206.1| folC [Rhizobium etli CIAT 652] Length = 450 | Back alignment and organism information |
---|
Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust. Identities = 200/423 (47%), Positives = 275/423 (65%), Gaps = 6/423 (1%) Query: 5 SLLKMGYLLEDLGRPQDRLPPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRW 64 SL ++ LL+ LG P +LPPVIH+ GTNGKGSV +F + LLE G S HVHTSPHL+ W Sbjct: 30 SLDRITRLLDQLGNPHRKLPPVIHVAGTNGKGSVTAFCRALLEAGGYSAHVHTSPHLVNW 89 Query: 65 NERFRLGVKGGRGRLVEDVELLDVFRRVRRVKSAQNLTIFELSIATALVLFSKYPADCAI 124 +ER+R+GV GGRG+LV+D D RRV + Q++T+FE+ A +LFS+ PAD AI Sbjct: 90 HERYRIGVAGGRGQLVDDAVFADAVRRVAEANAGQHITVFEILTAVTFILFSEQPADAAI 149 Query: 125 IEVGLGGSLDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGIIKPGCPVVIGHQ 184 IEVGLGG DATN+I AVSVI ISLDH+ LG+ V IA +K+GI+KPG PVVIGHQ Sbjct: 150 IEVGLGGRFDATNVISNPAVSVIMPISLDHQPYLGDRVELIAAEKAGIMKPGLPVVIGHQ 209 Query: 185 VYDEVREILVSKAEKMGCPYNVYGDDFYAFEKNKCLVYQDKISQTNLTVLGLVGEHQYIN 244 YD ++L+S AE++ CP V+G DF A E+ LVYQD+ +L + L G HQY N Sbjct: 210 EYDAALDVLMSTAERLHCPSAVFGQDFMAHEEYGRLVYQDEYGLADLPLPRLPGRHQYAN 269 Query: 245 AATAICAVQMAGFTLEKECINAALQSVQWFGRLQKITEGPLLNKLPDHSEVWIDGGHNPN 304 AA AI AV+ AGFT+ + + A+ SV+W GRLQ++++G LL P +E+W+DGGHNP Sbjct: 270 AAAAIRAVKAAGFTVTETMMEKAMNSVEWPGRLQRLSDGRLLQHAPAGAEIWVDGGHNPG 329 Query: 305 AGLVVSKEISKLKGSSNKPFYLVIGMVEGKKYGRYLEAFVELSPIVLSVSLICRGRERQS 364 AG V+++ ++ + ++P +L+IGM+ K Y +AF L V V + RG + Sbjct: 330 AGEVIAEAMANFEERQSRPLFLIIGMINTKDPVGYFKAFAGLVEKVFCVPI--RGSDAM- 386 Query: 365 ISITPKVLMQEAKKLGFQAMACSSMIEALSRVRKI-NEELPPPLILIAGSLYLAGEALRE 423 I P +L A G A S++ E+L ++ + + + PP IL+ GSLYL G+ L + Sbjct: 387 --IDPVILSNAAYDAGLVAEPMSTVGESLEAIKAVADPQALPPRILVGGSLYLVGDVLSD 444 Query: 424 NGV 426 NG Sbjct: 445 NGT 447 |
Species: Rhizobium etli Genus: Rhizobium Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
>gi|227823891|ref|YP_002827864.1| FolC bifunctional protein [Sinorhizobium fredii NGR234] Length = 447 | Back alignment and organism information |
---|
Score = 383 bits (983), Expect = e-104, Method: Compositional matrix adjust. Identities = 205/423 (48%), Positives = 278/423 (65%), Gaps = 6/423 (1%) Query: 5 SLLKMGYLLEDLGRPQDRLPPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRW 64 SL ++ LL LG P+ RLPP+IH+ GTNGKGSV +FS+ +LE +GLSVHVHTSPHL+ W Sbjct: 27 SLDRITRLLAALGNPETRLPPIIHVAGTNGKGSVTAFSRAILEAAGLSVHVHTSPHLVNW 86 Query: 65 NERFRLGVKGGRGRLVEDVELLDVFRRVRRVKSAQNLTIFELSIATALVLFSKYPADCAI 124 +ER+RLG KGG+G LV D L D RRV + Q +T+FE+ A VLF+++PAD I Sbjct: 87 HERYRLGAKGGKGALVSDPVLADAVRRVAEANAGQKITVFEILTAVTFVLFAEHPADVVI 146 Query: 125 IEVGLGGSLDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGIIKPGCPVVIGHQ 184 +EVGLGG DATN+I + AVSVI ISLDH+ LG+ V IA +K+GI+K GCPVVIGHQ Sbjct: 147 LEVGLGGRFDATNVIARPAVSVIMPISLDHQAYLGDRVELIAAEKAGIMKRGCPVVIGHQ 206 Query: 185 VYDEVREILVSKAEKMGCPYNVYGDDFYAFEKNKCLVYQDKISQTNLTVLGLVGEHQYIN 244 D VR++LV AE++GCP +VYG DF A E+ L++QD+ +L + L G HQY N Sbjct: 207 EEDGVRDVLVDTAERLGCPTSVYGQDFMAHEEFGRLIFQDENGLADLPLPRLPGRHQYAN 266 Query: 245 AATAICAVQMAGFTLEKECINAALQSVQWFGRLQKITEGPLLNKLPDHSEVWIDGGHNPN 304 AA AI AV+ AGF + + I L V+W GRLQ++ G L + P +E+WIDGGHNP Sbjct: 267 AAAAIRAVRAAGFDVPEAAIEKGLAGVEWPGRLQRLAGGKLAHYGPPAAEIWIDGGHNPG 326 Query: 305 AGLVVSKEISKLKGSSNKPFYLVIGMVEGKKYGRYLEAFVELSPIVLSVSLICRGRERQS 364 AG V+++ ++ + +P +L+IGM+ K Y +AF++L+ V +V + Sbjct: 327 AGQVIAEAMATFEERDPRPLFLIIGMINTKDPVGYFKAFLDLAEQVFTVPI-----HGSD 381 Query: 365 ISITPKVLMQEAKKLGFQAMACSSMIEALSRVRKINEELP-PPLILIAGSLYLAGEALRE 423 + P L +A G +A A SS+ EAL + ++ EE P PP ILI GSLYL G+ L + Sbjct: 382 AGLDPVALAADAAAAGLEANATSSVAEALGLIAELTEEDPGPPRILIGGSLYLVGDVLSD 441 Query: 424 NGV 426 NG Sbjct: 442 NGT 444 |
Species: Sinorhizobium fredii Genus: Sinorhizobium Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch
Conserved Domains in CDD Database Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Original result of RPS-BLASTagainst CDD database part II
Identity | Alignment graph | Length | Definition | E-value |
Target | 429 | FolC bifunctional protein [Candidatus Liberibacter asia | ||
TIGR01499 | 397 | TIGR01499, folC, folylpolyglutamate synthase/dihydrofol | 1e-83 | |
KOG2525 | 496 | KOG2525, KOG2525, KOG2525, Folylpolyglutamate synthase | 3e-49 | |
PLN02913 | 510 | PLN02913, PLN02913, dihydrofolate synthetase | 1e-46 | |
COG0769 | 475 | COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase | 2e-06 | |
COG0285 | 427 | COG0285, FolC, Folylpolyglutamate synthase [Coenzyme me | 7e-95 | |
PLN02881 | 530 | PLN02881, PLN02881, tetrahydrofolylpolyglutamate syntha | 4e-42 | |
PRK10846 | 416 | PRK10846, PRK10846, bifunctional folylpolyglutamate syn | 4e-36 | |
COG0770 | 451 | COG0770, MurF, UDP-N-acetylmuramyl pentapeptide synthas | 5e-07 | |
TIGR01143 | 417 | TIGR01143, murF, UDP-N-acetylmuramoyl-tripeptide--D-ala | 5e-04 | |
PRK11929 | 958 | PRK11929, PRK11929, putative bifunctional UDP-N-acetylm | 0.001 | |
pfam08245 | 188 | pfam08245, Mur_ligase_M, Mur ligase middle domain | 0.003 |
>gnl|CDD|162392 TIGR01499, folC, folylpolyglutamate synthase/dihydrofolate synthase | Back alignment and domain information |
---|
Score = 305 bits (783), Expect = 1e-83 Identities = 151/424 (35%), Positives = 215/424 (50%), Gaps = 34/424 (8%) Query: 6 LLKMGYLLEDLGRPQDRLPPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWN 65 L +M LLE LG PQD L PVIH+ GTNGKGS +F + +L +G V + TSPHL+ +N Sbjct: 1 LERMKKLLEALGNPQD-LYPVIHVAGTNGKGSTCAFLESILRAAGYKVGLFTSPHLVSFN 59 Query: 66 ERFRLGVKGGRGRLVEDVELLDVFRRVR-RVKS-AQNLTIFELSIATALVLFSKYPADCA 123 ER R+ G + D EL F +VR ++ +Q T FEL A + F++ D A Sbjct: 60 ERIRIN-----GEPISDEELAQAFEQVRPILEKLSQQPTYFELLTLLAFLYFAQAQVDVA 114 Query: 124 IIEVGLGGSLDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGIIKPGCPVVIGH 183 ++EVGLGG LDATN+IE + VSVITSI LDH +ILG+T+ IA +K+GIIK G P+V G Sbjct: 115 VLEVGLGGRLDATNVIEPL-VSVITSIGLDHTEILGDTLEEIAWEKAGIIKEGVPIVTGP 173 Query: 184 QVYDEVREILVSKAEKMGCPYNVYGDDF-YAFEKNKCLVYQDKISQTNLTVLGLVGEHQY 242 Q E +L KA++ G P V G DF Y+ L + L L+G+HQ Sbjct: 174 QE-PEALNVLKKKAQEKGAPLFVVGRDFNYSETDENYLSFSGANLFLEPLALSLLGDHQA 232 Query: 243 INAATAICAV---QMAGFTLEKECINAALQSVQWFGRLQKITEGPLLNKLPDHSEVWIDG 299 NAA A+ A+ L +E I L + W GRL+ ++E D+ + +DG Sbjct: 233 ENAALALAALEVLGKQRPKLSEEAIRKGLANTIWPGRLEILSE--------DNPNILLDG 284 Query: 300 GHNPNAGLVVSKEISKLKGSSNKPFYLVIGMVEGKKYGRYLEAFVELSPIVLSVSLICRG 359 HNP++ +++ K + +P L+ G + K L + + V+ Sbjct: 285 AHNPHSAEALAEWFKKRF--NGRPIILLFGALADKDAAAMLAPLKPVVDKEVFVTPFDYP 342 Query: 360 RERQSISITPKVLMQEAKKLGFQAMACSSMIEALSRVRKINEELPPPLILIAGSLYLAGE 419 R + L A+ G + EAL+ + E IL+ GSLYL GE Sbjct: 343 R-----ADDAADLAALAETFGKE--TVEDWREALALALNASAE---DDILVTGSLYLVGE 392 Query: 420 ALRE 423 + Sbjct: 393 VRKL 396 |
A mutation study of the FolC gene of E. coli suggests that both activitities belong to the same active site. Because some examples are monofunctional (and these cannot be separated phylogenetically), the model is treated as subfamily, not equivalog. Length = 397 |
>gnl|CDD|37736 KOG2525, KOG2525, KOG2525, Folylpolyglutamate synthase [Coenzyme transport and metabolism] | Back alignment and domain information |
---|
Score = 191 bits (486), Expect = 3e-49 Identities = 131/458 (28%), Positives = 193/458 (42%), Gaps = 74/458 (16%) Query: 3 ADSLLKMGYLLEDLGRP--QDRLPPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPH 60 +L +M LLE LG P Q+ L +IH+ GT GKGS +F++ +L GL +TSPH Sbjct: 50 GLTLPRMRKLLERLGNPEDQNSLN-IIHVAGTKGKGSTCAFTESILRQQGLRTGFYTSPH 108 Query: 61 LIRWNERFRLGVKGGRGRLVEDVELLDVFRRV------RRVKSAQNLTIFELSIATALVL 114 L+ ER R+ G+ + + + F V ++K T FE A + Sbjct: 109 LLSVRERIRIN-----GQPISEEKFTKYFWEVYERLKSTKLKEVSMPTYFEFLTLLAFHV 163 Query: 115 FSKYPADCAIIEVGLGGSLDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGIIK 174 F K D A+IEVGLGG LDATN+IEK V ITS+ LDH LGNT+S IA +K+GI K Sbjct: 164 FVKENVDVAVIEVGLGGELDATNVIEKPVVCGITSLGLDHTSFLGNTLSEIAWEKAGIFK 223 Query: 175 PGCPVVIGHQVYDEVREILVSKAEKMGCPYNVYGDDFYAFEKNKCLVYQDKISQTNLTVL 234 G P Q E +L +A ++G P V A+E + L Sbjct: 224 EGVPAFTVPQP-PEALNVLKERASELGVPLFVV-PPLEAYELSG-------------VNL 268 Query: 235 GLVGEHQYINAATAI------------------CAVQMAGFTLEKECINAALQSVQWFGR 276 GL+G HQ+ NA+ A+ A+Q +G L S W GR Sbjct: 269 GLIGTHQWSNASLAVQLASEWLIQNGRVAEGVLDALQTSGLIPPAFLS--GLASTDWPGR 326 Query: 277 LQKITEGPLLNKLPDHSEVWIDGGHNPNAGLVVSKEISK-LKGSSNKPFYLVIGMVEGKK 335 LQ + G + +DG H + +K K ++G +++ + Sbjct: 327 LQILEYGRGV-------TWLLDGAHTKESAEACAKWFRKAVRGLKKLTSLILLFNCTSDR 379 Query: 336 YGRYLEAFVELSPIVLSVSLICRGRERQSISITPKVLMQEAKKLGFQAMACSSMIEALSR 395 L P++ ++I G S+ P + +S E L+ Sbjct: 380 ------DPPLLLPLLKPDAVI--GTRFSSVVFMPNITSSSPVGSADSISLNTSTEEQLNW 431 Query: 396 VRKI---------NEELPPPLILIAGSLYLAGEALREN 424 + +E ++ GSLYLA E LR++ Sbjct: 432 QNDLQSVWEELKESEGKTEDPSIVFGSLYLAYELLRDD 469 |
Length = 496 |
>gnl|CDD|178501 PLN02913, PLN02913, dihydrofolate synthetase | Back alignment and domain information |
---|
Score = 182 bits (464), Expect = 1e-46 Identities = 131/460 (28%), Positives = 203/460 (44%), Gaps = 56/460 (12%) Query: 6 LLKMGYLLEDLGRPQDRLPPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWN 65 L +M L++ LG P + +H+ GT GKGS A+F +L G SV +TSPHL Sbjct: 58 LGRMRRLMDRLGNPHSKFK-AVHVAGTKGKGSTAAFLSNILRAQGYSVGCYTSPHLRSIR 116 Query: 66 ERFRLGVKGGRGRLVEDVELLDVFRRVR----RVKSAQN--LTIFELSIATALVLFSKYP 119 ER +G G V L D+F ++ +N LT FE+ A A LF++ Sbjct: 117 ERISVGKLGKP---VSTNTLNDLFHGIKPILDEAIQLENGSLTHFEVLTALAFKLFAQEN 173 Query: 120 ADCAIIEVGLGGSLDATNII--EKVAVSVITSISLDHEKILGNTVSAIAKDKSGIIKPGC 177 D A+IE GLGG+ DATN+I +A SVIT+I +H LG ++ +IA KSGIIK G Sbjct: 174 VDIAVIEAGLGGARDATNVIDSSGLAASVITTIGEEHLAALGGSLESIALAKSGIIKQGR 233 Query: 178 PVVIGHQVYDEVREILVSKAEKMGCPYNVYGDDFYAFEKN-----KCLVYQD----KISQ 228 PVV+G + IL KA M P A + K ++ + + Sbjct: 234 PVVLGGPFLPHIESILRDKASSMNSPV------VSASDPGVRSSIKGIITDNGKPCQSCD 287 Query: 229 TNLTV--------------LGLVGEHQYINAATAICA---VQMAGFTLEKECINAALQSV 271 + V L ++G HQ NA TA CA ++ G+ + I A L++ Sbjct: 288 IVIRVEKDDPLFIELSDVNLRMLGSHQLQNAVTAACAALCLRDQGWRISDASIRAGLENT 347 Query: 272 QWFGRLQKITEGPLLNKLPDHSEVWIDGGHNPNAGLVVSKEISKLKGSSNKPFYLVIGMV 331 GR Q +T + V +DG H + + I LV+ M Sbjct: 348 NLLGRSQFLTSKEAEVLGLPGATVLLDGAHTKESAKALVDTIKTAFPE--ARLALVVAMA 405 Query: 332 EGKKYGRYLEAFV---ELSPIVLSVSLICRGRERQ-SISITPKVLMQEAKKLGFQAMACS 387 K + + F+ + + L+ + I G+ R S S + ++ A +LG + + Sbjct: 406 SDKDHLAFASEFLSGLKPEAVFLTEADIAGGKSRSTSASALKEAWIKAAPELGIETLLAE 465 Query: 388 ------SMIEALSRVRKINEELPPPLILIAGSLYLAGEAL 421 S+++A + +RK P ++ + GSL++ L Sbjct: 466 NNSLLKSLVDASAILRKARTLDPSSVVCVTGSLHIVSAVL 505 |
Length = 510 |
>gnl|CDD|31112 COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
---|
Score = 49.6 bits (118), Expect = 2e-06 Identities = 85/417 (20%), Positives = 140/417 (33%), Gaps = 74/417 (17%) Query: 17 GRPQDRLPPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNERFRLGVKGGR 76 G P +L VI + GTNGK + S ++L+ G + G Sbjct: 85 GLPSGKLK-VIGVTGTNGKTTTTSLLAQILKKLGKKT-----------------ALIGTE 126 Query: 77 GRLVEDVELLDVFRRVRRVKSAQNLTIFELSIATALVLFSKYPADCAIIEVGLGGSLDAT 136 G + ++ T L + L A+ A++EV G + Sbjct: 127 GDELSP----------GILEPTGLTTPEALDLQNLLRDLLDRGAEIAVMEVSSHGLVQGR 176 Query: 137 NIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGIIKPGCPVVIGHQVY---DEVREIL 193 V V T++S DH T+ K+ + + G V D Sbjct: 177 VEGVTFDVGVFTNLSRDHLD-YHGTMEYYGAAKAVLFESLPH--SGEAVINPDDGHGLDY 233 Query: 194 VSKAEKMGCPYNVYGDDF-YAFEKNKCLVYQDKISQTNLTV--------LGLVGEHQYIN 244 + + Y YG DF + + S L L G N Sbjct: 234 KERLKNALGDYITYGCDFKRPDLDYRGIEESSSGSDFVFEPSGGIGEYELPLPGLFNVYN 293 Query: 245 AATAICAVQMAGFTLEKECINAALQSVQW-FGRLQKITEGPLLNKLPDHSEVWIDGGHNP 303 A A+ A G LE I A L++++ GR++ + G L V +D HNP Sbjct: 294 ALAAVAAALALGVDLED--ILAGLETLKPVPGRMELVNIGGKL--------VIVDYAHNP 343 Query: 304 NAGLVVSKEISKLKGSSNKPFYLVIGMV-EGKKYGRYLEAFV--ELSPIVLSVSLICRGR 360 + + K + ++ + +V G + K R + +L+ IV+ S R Sbjct: 344 DG---LEKALRAVRLHAAGRLIVVFGCGGDRDKSKRPDMGAIAEQLADIVIVTSDNPRSE 400 Query: 361 ERQSISITPKVLMQEAKKLGFQAMACSSMIEALSRVRKINEEL----PPPLILIAGS 413 + P V++ + G +A +IE R I + L ++LIAG Sbjct: 401 D-------PAVILADILA-GIEAPEKYEIIE--DREEAIRKALDLAKEGDVVLIAGK 447 |
Length = 475 |
>gnl|CDD|30633 COG0285, FolC, Folylpolyglutamate synthase [Coenzyme metabolism] | Back alignment and domain information |
---|
Score = 343 bits (880), Expect = 7e-95 Identities = 159/426 (37%), Positives = 228/426 (53%), Gaps = 34/426 (7%) Query: 5 SLLKMGYLLEDLGRPQDRLPPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRW 64 L ++ LLE LG PQ + PPVIH+ GTNGKGS +F + +L +G V V+TSPHL+ + Sbjct: 26 GLERISRLLERLGNPQ-KSPPVIHVAGTNGKGSTCAFLESILREAGYKVGVYTSPHLLSF 84 Query: 65 NERFRLGVKGGRGRLVEDVELLDVFRRVRRVKSAQN---LTIFELSIATALVLFSKYPAD 121 NER R+ G + D EL F RV + + LT FE+ A A + F++ D Sbjct: 85 NERIRIN-----GEPISDEELAAAFERVEEAAGSLDLISLTYFEVLTAMAFLYFAEAKVD 139 Query: 122 CAIIEVGLGGSLDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGIIKPGCPVVI 181 AI+EVGLGG LDATN+IE VSVITSI LDH LG+T+ +IA++K+GIIK G P VI Sbjct: 140 VAILEVGLGGRLDATNVIEPD-VSVITSIGLDHTAFLGDTLESIAREKAGIIKAGKPAVI 198 Query: 182 GHQVYDEVREILVSKAEKMGCPYNVYGDDFYAFEKNKCLVYQD--KISQTNLTVLGLVGE 239 G Q E ++ +AE++G P V G DF E+ +Q + L +LG G Sbjct: 199 GEQQPPEALNVIAERAEELGAPLFVLGPDFQVLEEGNGFSFQGGGGLLDLPLPLLG--GH 256 Query: 240 HQYINAATAICAVQMAGFTLEKECINAALQSVQWFGRLQKITEGPLLNKLPDHSEVWIDG 299 HQ NAA AI A++ G + +E I L +V W GRL++++E PL + +DG Sbjct: 257 HQIENAALAIAALEALGKEISEEAIRKGLANVDWPGRLERLSENPL---------ILLDG 307 Query: 300 GHNPNAGLVVSKEISKLKGSSNKPFYLVIGMVEGKKYGRYLEAFVELSPIVLSVSLICRG 359 HNP+A +++ + L + LV GM++ K L A + + + + L Sbjct: 308 AHNPHAARALAETLKTLFNDRPRL-TLVFGMLKDKDIAGMLAALLPIVDEIYTTPL---P 363 Query: 360 RERQSISITPKVLMQEAKKLGFQAMACSSMIEALSRVRKINEELPPPLILIAGSLYLAGE 419 R ++ + L+ A + G + EAL + +E L+L+ GSLYLAGE Sbjct: 364 WPR---ALDAEELLAFAGERGGV--ELDDVAEALELALEKADE--DDLVLVTGSLYLAGE 416 Query: 420 ALRENG 425 L Sbjct: 417 VLELLK 422 |
Length = 427 |
>gnl|CDD|178469 PLN02881, PLN02881, tetrahydrofolylpolyglutamate synthase | Back alignment and domain information |
---|
Score = 167 bits (426), Expect = 4e-42 Identities = 103/300 (34%), Positives = 142/300 (47%), Gaps = 45/300 (15%) Query: 26 VIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNERFRLGVKGGRGRLVEDVEL 85 VIH+ GT GKGS +F++ +L G + TSPHLI ERFRL G + + + Sbjct: 63 VIHVAGTKGKGSTCTFTESILRNCGFRTGLFTSPHLIDVRERFRLD-----GVDISEEKF 117 Query: 86 LDVF---RRVRRVKSAQNL---TIFELSIATALVLFSKYPADCAIIEVGLGGSLDATNII 139 L F + K+ ++L F A +FS D AI+EVGLGG LDATN++ Sbjct: 118 LRYFWWCWDRLKEKTTEDLPMPAYFRFLTLLAFKIFSAEQVDVAILEVGLGGRLDATNVV 177 Query: 140 EKVAVSVITSISLDHEKILGNTVSAIAKDKSGIIKPGCPVVIGHQVYDEVREILVSKAEK 199 +K V ITS+ DH +ILG+T+ IA +K+GI KPG P Q DE +L +A + Sbjct: 178 QKPVVCGITSLGYDHMEILGDTLGKIAGEKAGIFKPGVPAFTVPQP-DEAMRVLEERASE 236 Query: 200 MGCPYNVYGD-DFYAFEKNKCLVYQDKISQTNLTVLGLVGEHQYINAATAI----CAVQM 254 +G P V D Y K LGL GEHQY+NA A+ +Q Sbjct: 237 LGVPLQVVEPLDSYGLSGLK---------------LGLAGEHQYLNAGLAVALCSTWLQR 281 Query: 255 AGFTLEKECINAA----------LQSVQWFGRLQKITEGPLLNKLPDHSEVW-IDGGHNP 303 G E E + A L + GR Q + + +N V+ +DG H+P Sbjct: 282 TG-HEEFEALLQAGTLPEQFIKGLSTASLQGRAQVVPD-SYINSEDSGDLVFYLDGAHSP 339 |
Length = 530 |
>gnl|CDD|182774 PRK10846, PRK10846, bifunctional folylpolyglutamate synthase/ dihydrofolate synthase; Provisional | Back alignment and domain information |
---|
Score = 147 bits (374), Expect = 4e-36 Identities = 100/332 (30%), Positives = 159/332 (47%), Gaps = 31/332 (9%) Query: 9 MGYLLEDLGRPQDRL------PPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLI 62 +G LE + + RL P V + GTNGKG+ + +L +G V V++SPHL+ Sbjct: 30 LG--LERVSQVAARLDLLKPAPFVFTVAGTNGKGTTCRTLESILMAAGYRVGVYSSPHLV 87 Query: 63 RWNERFRLGVKGGRGRLVEDVELLDVFRRVRRVKSAQNLTIFELSIATALVLFSKYPADC 122 R+ ER R+ +G+ + + F + + +LT FE +AL LF + D Sbjct: 88 RYTERVRI-----QGQELPESAHTASFAEIEAARGDISLTYFEYGTLSALWLFKQAQLDV 142 Query: 123 AIIEVGLGGSLDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGIIKPGCPVVIG 182 I+EVGLGG LDATNI++ V+V+TSI+LDH LG +I ++K+GI + P V+G Sbjct: 143 VILEVGLGGRLDATNIVD-ADVAVVTSIALDHTDWLGPDRESIGREKAGIFRAEKPAVVG 201 Query: 183 HQVYDEVREILVSKAEKMGCPYNVYGDDFYAFEKNKCLVYQDKISQTNLTVLGLVGEHQY 242 ++ + A++ G G D+ + + D L L L Sbjct: 202 EP---DMPSTIADVAQEKGALLQRRGVDWNYSVTDHDWAFSDG--DGTLENLPLPNVPL- 255 Query: 243 INAATAICAVQMAGFTLEKECINAALQSVQWFGRLQKITEGPLLNKLPDHSEVWIDGGHN 302 NAATA+ A++ +G + ++ I + S GR Q ++E P + +D HN Sbjct: 256 PNAATALAALRASGLEVSEQAIRDGIASAILPGRFQIVSESPRV---------ILDVAHN 306 Query: 303 PNAGLVVSKEISKLKGSSNKPFYLVIGMVEGK 334 P+A ++ + L N VIGM+ K Sbjct: 307 PHAAEYLTGRLKAL--PKNGRVLAVIGMLHDK 336 |
Length = 416 |
>gnl|CDD|31113 COG0770, MurF, UDP-N-acetylmuramyl pentapeptide synthase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
---|
Score = 51.1 bits (122), Expect = 5e-07 Identities = 71/354 (20%), Positives = 121/354 (34%), Gaps = 74/354 (20%) Query: 4 DSLLKMGYLLEDLGRPQDRLPPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIR 63 D+L +G L + Q VI I G+NGK + +L T G VH +P Sbjct: 85 DTLEALGKLAKAY--RQKFNAKVIAITGSNGKTTTKEMLAAILSTKG---KVHATPG--- 136 Query: 64 WNERFRLGVKGGRGRLVEDVELLDVFRRVRRVKSAQNLTIFELSIATALVLFSKYPADCA 123 N +G+ LT+ L T + A Sbjct: 137 -NFNNEIGLP---------------------------LTLLRLPADT----------EYA 158 Query: 124 IIEVG--LGGSLDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGIIK--PGCPV 179 ++E+G G + + I + ++VIT+I H + G + IA+ K+ I+ + Sbjct: 159 VLEMGMNHPGEIAELSEIARPDIAVITNIGEAHLEGFG-SREGIAEAKAEILAGLRPEGI 217 Query: 180 VIGHQVYDEVREILVSKAE-------KMGCPYNVYGDDFYAFEKNKCLVYQDKISQTNLT 232 I + + + + +K + + + + E+ + + Sbjct: 218 AILNA-DNPLLKNWAAKIGNAKVLSFGLNNGGDFRATNIHLDEEGSSFTLDIEGGEAEFE 276 Query: 233 VLGLVGEHQYINAATAICAVQMAGFTLEKECINAALQSVQWFGRLQKITEGPLLNKLPDH 292 L L G H NA A G LE+ I A L+ + K +G L L + Sbjct: 277 -LPLPGRHNVTNALAAAALALELGLDLEE--IAAGLKEL-------KPVKGRLEVILLAN 326 Query: 293 SEVWIDGGHNPNAGLVVSKEISKLKGSSNKPFYLVIG-MVEGKKYGRYLEAFVE 345 + ID +N N + + L + V+G M+E G E E Sbjct: 327 GKTLIDDSYNANPD-SMRAALDLLAALPGRKGIAVLGDMLE---LGEESEELHE 376 |
Length = 451 |
>gnl|CDD|162224 TIGR01143, murF, UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase | Back alignment and domain information |
---|
Score = 41.1 bits (97), Expect = 5e-04 Identities = 43/181 (23%), Positives = 71/181 (39%), Gaps = 29/181 (16%) Query: 121 DCAIIEVGLG--GSLDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGIIKPGCP 178 D A++E+G G + I K ++VIT+I H + G ++ IA+ K I++ Sbjct: 127 DYAVLEMGASHPGEIAYLAEIAKPDIAVITNIGPAHLEGFG-SLEGIAEAKGEILQGLKE 185 Query: 179 ---VVIG--HQVYDEVREILVSKAEKMGCPYNVYGDDFYAFEKNKCLVYQDKISQTNLTV 233 VI + + + L +KA + G DF A + + T T+ Sbjct: 186 NGIAVINADDPAFAKFAKRLPNKAILS---FGFEGGDFSAA-----DISYSALGSTGFTL 237 Query: 234 ----------LGLVGEHQYINAATAICAVQMAGFTLEKECINAALQSVQW-FGRLQKITE 282 L L+G H +NA A G LE+ I L ++ GR + T+ Sbjct: 238 VAPGGEFEVSLPLLGRHNVMNALAAAALALELGIPLEE--IAEGLAELKLVKGRFEIQTK 295 Query: 283 G 283 Sbjct: 296 N 296 |
This family consists of the strictly bacterial MurF gene of peptidoglycan biosynthesis. This enzyme is almost always UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase, but in a few species, MurE adds lysine rather than diaminopimelate. This enzyme acts on the product from MurE activity, and so is also subfamily rather than equivalog. Staphylococcus aureus is an example of species in this MurF protein would differ. Length = 417 |
>gnl|CDD|183385 PRK11929, PRK11929, putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase; Provisional | Back alignment and domain information |
---|
Score = 40.1 bits (94), Expect = 0.001 Identities = 55/228 (24%), Positives = 88/228 (38%), Gaps = 32/228 (14%) Query: 123 AIIEVGLG--GSLDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGII----KPG 176 A+ E+G+ G + I V+++T+ +H++ + + V A+A+ K II + G Sbjct: 661 AVFELGMNHPGEIAYLAAIAAPTVALVTNAQREHQEFMHS-VEAVARAKGEIIAALPEDG 719 Query: 177 CPVVIGHQVYDEVREILVSKAEKMGCPY----NVYGDDF------YAFEKNKCLVYQDKI 226 VV G Y + L + +VY + +C V Sbjct: 720 VAVVNGDDPYTAIWAKLAGARRVLRFGLQPGADVYAEKIAKDISVGEAGGTRCQVVTPA- 778 Query: 227 SQTNLTVLGLVGEHQYINAATAICAVQMAGFTLEKECINAALQSVQWF-GRLQKITEGPL 285 + L L+GEH NA AI AG +L++ A L+ Q GR+Q+ Sbjct: 779 GSAEVY-LPLIGEHNLRNALAAIACALAAGASLKQIR--AGLERFQPVAGRMQRRRL--- 832 Query: 286 LNKLPDHSEVWIDGGHNPNAGLVVSKEISKLKGSSNKPFYLVIG-MVE 332 ID +N N + I L N P LV+G M+E Sbjct: 833 -----SCGTRIIDDTYNANP-DSMRAAIDVLAELPNGPRALVLGDMLE 874 |
Length = 958 |
>gnl|CDD|149357 pfam08245, Mur_ligase_M, Mur ligase middle domain | Back alignment and domain information |
---|
Score = 38.4 bits (90), Expect = 0.003 Identities = 49/237 (20%), Positives = 74/237 (31%), Gaps = 62/237 (26%) Query: 29 IGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNERFRLGVKGGRGRLVEDVELLDV 88 I GTNGK + LL +G Sbjct: 1 ITGTNGKTTTTELIAALLSAAG-------------------------------------- 22 Query: 89 FRRVRRVKSAQNLTIFELSIATALVLFSKYPADCAIIEVGLGGSLDA-TNIIEKVAVSVI 147 V + N T + + L L + AD A++E+ G + + K ++VI Sbjct: 23 ----GVVGTGGN-TNNAIGLPLLLALMERKGADYAVLELSSFGLGEGRLEGLAKPDIAVI 77 Query: 148 TSISLDHEKILGNTVSAIAKDKSGI---IKPGCPVVIGHQVYDEVREILVSKAEKMGCPY 204 T+IS DH G T+ A K+ I + VI D+ L + + G Sbjct: 78 TNISPDHLDYHG-TMENYAAAKAEIFEGLPEDGIAVINA---DD--PELAKRLKNAGAKV 131 Query: 205 NVYG-DDFYAFEKNKCLVYQDKISQTNLTV--------LGLVGEHQYINAATAICAV 252 +G ++ V + TV L L G H NA A+ A Sbjct: 132 ITFGLENEADDRAANIYVSSEGGKIVLFTVPGGELEISLPLPGRHNVYNALAALAAA 188 |
Length = 188 |
Conserved Domains in CDD Database Detected by HHsearch
Original result of HHsearch against CDD database
Identity | Alignment graph | Length | Definition | Probability |
Target | 429 | FolC bifunctional protein [Candidatus Liberibacter asia | ||
). A crystal structure of the MgATP complex of the enzyme from Lactobacillus casei reveals that folylpolyglutamate synthetase is a modular protein consisting of two domains, one with a typical mononucleotide-binding fold and the other strikingly similar to the folate-binding enzyme dihydrofolate reductase. The active site of the enzyme is located in a large interdomain cleft adjacent to an ATP-binding P-loop motif. Opposite this site, in the C domain, a cavity likely to be the folate binding site has been identified, and inspection of this cavity and the surrounding protein structure suggests that the glutamate tail of the substrate may project into the active site. A further feature of the structure is a well defined Omega loop, which contributes both to the active site and to interdomain interactions .; GO: 0004326 tetrahydrofolylpolyglutamate synthase activity, 0005524 ATP binding, 0009396 folic acid and derivative biosynthetic process." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=TIGR01499">TIGR01499 | 460 | folC FolC bifunctional protein; InterPro: IPR001645 Fol | 100.0 | |
COG0285 | 427 | FolC Folylpolyglutamate synthase [Coenzyme metabolism] | 100.0 | |
PRK10846 | 416 | bifunctional folylpolyglutamate synthase/ dihydrofolate | 100.0 | |
KOG2525 | 496 | consensus | 100.0 | |
TIGR01085 | 494 | murE UDP-N-acetylmuramyl-tripeptide synthetases; InterP | 100.0 | |
PRK11929 | 953 | putative bifunctional UDP-N-acetylmuramoylalanyl-D-glut | 100.0 | |
PRK00139 | 481 | murE UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diamin | 100.0 | |
PRK00421 | 459 | murC UDP-N-acetylmuramate--L-alanine ligase; Provisiona | 100.0 | |
COG0769 | 475 | MurE UDP-N-acetylmuramyl tripeptide synthase [Cell enve | 100.0 | |
TIGR02068 | 876 | cya_phycin_syn cyanophycin synthetase; InterPro: IPR011 | 100.0 | |
PRK10773 | 452 | murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanin | 100.0 | |
PRK11929 | 953 | putative bifunctional UDP-N-acetylmuramoylalanyl-D-glut | 100.0 | |
TIGR01143 | 462 | murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanin | 100.0 | |
PRK02705 | 459 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syntheta | 100.0 | |
PRK03803 | 448 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syntheta | 100.0 | |
PRK04308 | 445 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syntheta | 100.0 | |
PRK02472 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syntheta | 100.0 | |
PRK02006 | 501 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syntheta | 100.0 | |
PRK03806 | 438 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syntheta | 100.0 | |
PRK11930 | 824 | putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D | 100.0 | |
PRK01390 | 457 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syntheta | 100.0 | |
TIGR01082 | 491 | murC UDP-N-acetylmuramate--alanine ligase; InterPro: IP | 100.0 | |
PRK01438 | 481 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syntheta | 100.0 | |
PRK01710 | 458 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syntheta | 100.0 | |
PRK04663 | 438 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syntheta | 100.0 | |
PRK03369 | 487 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syntheta | 100.0 | |
PRK04690 | 468 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syntheta | 100.0 | |
COG0770 | 451 | MurF UDP-N-acetylmuramyl pentapeptide synthase [Cell en | 100.0 | |
COG0773 | 459 | MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope | 100.0 | |
PRK01368 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syntheta | 100.0 | |
PRK00141 | 476 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syntheta | 100.0 | |
COG0771 | 448 | MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Ce | 100.0 | |
TIGR01087 | 476 | murD UDP-N-acetylmuramoylalanine--D-glutamate ligase; I | 100.0 | |
PRK00683 | 418 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syntheta | 100.0 | |
PRK03815 | 401 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syntheta | 99.98 | |
TIGR01081 | 459 | mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso | 99.96 | |
pfam08245 | 188 | Mur_ligase_M Mur ligase middle domain. | 99.96 | |
pfam02875 | 87 | Mur_ligase_C Mur ligase family, glutamate ligase domain | 99.43 | |
COG1703 | 323 | ArgK Putative periplasmic protein kinase ArgK and relat | 98.03 | |
TIGR00750 | 333 | lao LAO/AO transport system ATPase; InterPro: IPR005129 | 97.96 | |
pfam03308 | 267 | ArgK ArgK protein. The ArgK protein acts as an ATPase e | 97.47 | |
PRK09435 | 325 | arginine/ornithine transport system ATPase; Provisional | 97.37 | |
cd03114 | 148 | ArgK-like The function of this protein family is unkown | 96.93 | |
TIGR03172 | 232 | probable selenium-dependent hydroxylase accessory prote | 97.39 | |
TIGR03453 | 387 | partition_RepA plasmid partitioning protein RepA. Membe | 96.97 | |
PRK13869 | 405 | plasmid-partitioning protein RepA; Provisional | 96.77 | |
PHA02519 | 387 | plasmid partition protein SopA; Reviewed | 96.31 | |
PRK05439 | 312 | pantothenate kinase; Provisional | 95.9 | |
cd02040 | 270 | NifH NifH gene encodes component II (iron protein) of n | 95.68 | |
PRK00090 | 223 | bioD dithiobiotin synthetase; Reviewed | 95.17 | |
PRK00771 | 433 | signal recognition particle protein Srp54; Provisional | 94.93 | |
PRK13705 | 388 | plasmid-partitioning protein SopA; Provisional | 94.91 | |
PRK06761 | 281 | hypothetical protein; Provisional | 94.57 | |
PRK10867 | 453 | signal recognition particle protein; Provisional | 94.18 | |
PRK11670 | 369 | putative ATPase; Provisional | 94.14 | |
cd01983 | 99 | Fer4_NifH The Fer4_NifH superfamily contains a variety | 94.04 | |
COG2403 | 449 | Predicted GTPase [General function prediction only] | 93.71 | |
TIGR00064 | 284 | ftsY signal recognition particle-docking protein FtsY; | 92.89 | |
cd02025 | 220 | PanK Pantothenate kinase (PanK) catalyzes the phosphory | 92.48 | |
COG1663 | 336 | LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope | 92.45 | |
PRK09112 | 352 | DNA polymerase III subunit delta'; Validated | 92.42 | |
PRK07667 | 190 | uridine kinase; Provisional | 91.9 | |
COG0132 | 223 | BioD Dethiobiotin synthetase [Coenzyme metabolism] | 91.86 | |
COG1763 | 161 | MobB Molybdopterin-guanine dinucleotide biosynthesis pr | 91.75 | |
TIGR02397 | 363 | dnaX_nterm DNA polymerase III, subunits gamma and tau; | 91.6 | |
PRK01906 | 339 | tetraacyldisaccharide 4'-kinase; Provisional | 91.59 | |
CHL00175 | 279 | minD septum-site determining protein; Validated | 91.5 | |
PRK10818 | 270 | cell division inhibitor MinD; Provisional | 91.35 | |
COG4240 | 300 | Predicted kinase [General function prediction only] | 91.34 | |
) of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) . The MobB domain is similar to that of the urease accessory protein UreG and the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocentres of their respective target enzymes. It is involved in the final step of molybdenum-cofactor biosynthesis. While its precise function has not been identified it is thought to be involved in the transfer of a guanine dinucleotide moiety to molybdopterin, as it shows GTP-binding and weak GTPase activity . The MobB protein (P32125 from SWISSPROT) from Escherichia coli, which is comprised of this domain, is a homodimer . Each molecule is composed of two distinct regions - an outer region comprised of 6 beta-strands and three alpha helices, and an inner region comprised of a two-strand beta hairpin followed by an alpha helix. These regions require interaction with the second monomer to allow proper folding to occur. The two monomers are intertwined and form an extensive 16-stranded beta-sheet. While the active site could not be positively identified, the presence of highly conserved residues suggests the substrate binding site occurs in the central solvent channel.; GO: 0005525 GTP binding, 0006777 Mo-molybdopterin cofactor biosynthetic process." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=TIGR00176">TIGR00176 | 165 | mobB molybdopterin-guanine dinucleotide biosynthesis pr | 91.33 | |
pfam00142 | 269 | Fer4_NifH 4Fe-4S iron sulfur cluster binding proteins, | 91.25 | |
PRK00313 | 332 | lpxK tetraacyldisaccharide 4'-kinase; Provisional | 91.18 | |
COG0489 | 265 | Mrp ATPases involved in chromosome partitioning [Cell d | 91.17 | |
PRK10751 | 170 | molybdopterin-guanine dinucleotide biosynthesis protein | 90.87 | |
pfam02606 | 318 | LpxK Tetraacyldisaccharide-1-P 4'-kinase. This family c | 90.77 | |
pfam00448 | 196 | SRP54 SRP54-type protein, GTPase domain. This family in | 90.76 | |
COG1072 | 283 | CoaA Panthothenate kinase [Coenzyme metabolism] | 90.68 | |
cd02037 | 169 | MRP-like MRP (Multiple Resistance and pH adaptation) is | 90.51 | |
PRK12374 | 231 | putative dithiobiotin synthetase; Provisional | 90.32 | |
pfam03205 | 122 | MobB Molybdopterin guanine dinucleotide synthesis prote | 90.24 | |
PRK09270 | 230 | frcK putative fructose transport system kinase; Reviewe | 90.06 | |
KOG0780 | 483 | consensus | 90.01 | |
PRK10416 | 499 | cell division protein FtsY; Provisional | 94.92 | |
TIGR02082 | 1265 | metH methionine synthase; InterPro: IPR011822 Vitamin B | 93.74 | |
PRK13896 | 432 | cobyrinic acid a,c-diamide synthase; Provisional | 93.41 | |
PRK06731 | 270 | flhF flagellar biosynthesis regulator FlhF; Validated | 92.67 | |
TIGR02533 | 495 | type_II_gspE general secretory pathway protein E; Inter | 92.55 | |
COG0552 | 340 | FtsY Signal recognition particle GTPase [Intracellular | 91.7 | |
PRK11519 | 720 | tyrosine kinase; Provisional | 91.44 | |
PRK09841 | 726 | cryptic autophosphorylating protein tyrosine kinase Etk | 90.97 | |
TIGR03029 | 274 | EpsG chain length determinant protein tyrosine kinase E | 91.12 |
>TIGR01499 folC FolC bifunctional protein; InterPro: IPR001645 Folylpolyglutamate synthase 6 | Back alignment and domain information |
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Probab=100.00 E-value=0 Score=763.73 Aligned_cols=405 Identities=39% Similarity=0.576 Sum_probs=351.9 Q ss_pred HHHHHHHHHHCCCHHHHC--CCEEEEECCCCHHHHHHHHHHHH-HHCCCCEEEEECCCCCEEEEEEEECCCCCCCEECCH Q ss_conf 899999998729958835--98399945898479999999999-997893514137841101200898884778715588 Q gi|254780821|r 6 LLKMGYLLEDLGRPQDRL--PPVIHIGGTNGKGSVASFSQRLL-ETSGLSVHVHTSPHLIRWNERFRLGVKGGRGRLVED 82 (429) Q Consensus 6 l~r~~~ll~~lg~P~~~~--~~vI~VtGTnGKttt~~~i~~il-~~~g~k~g~~tSPhl~~~~Eri~i~~~~~~g~~i~~ 82 (429) T Consensus 1 L~r~~~ll~~LG~P~~~~~a~~~IHVaGTNGKGST~a~l~~iL~~~~G~~VG~fTSPHl~~f~ERI~~n-----G~~i~d 75 (460) T TIGR01499 1 LERMKKLLEALGNPHQDLNALPVIHVAGTNGKGSTCAFLESILREAAGYKVGLFTSPHLVSFNERIRVN-----GEPISD 75 (460) T ss_pred CHHHHHHHHHCCCCHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCEEEEEECCEEEEEEEEEEEC-----CEECCH T ss_conf 947889999708873792489779997206875899999999887539778888737387422347898-----857688 Q ss_pred HHHHHHHHHHHHCCCC-------CCCCHHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHH Q ss_conf 9999999998630477-------6779578999999987411-4462477764447567641356775158986025000 Q gi|254780821|r 83 VELLDVFRRVRRVKSA-------QNLTIFELSIATALVLFSK-YPADCAIIEVGLGGSLDATNIIEKVAVSVITSISLDH 154 (429) Q Consensus 83 ~~~~~~~~~i~~~~~~-------~~~t~FE~lt~~a~~~f~~-~~~d~~vlE~GlGGr~DaTnvi~~~~vavITnI~~DH 154 (429) T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~FE~~T~~Af~~F~~~~~vd~av~EVGlGGrlDaTNv~~~p~~~~iT~ig~DH 155 (460) T TIGR01499 76 EELAQAFEQVRPILKKLSQETEYSQPTFFELLTLLAFLYFAQLAQVDVAVLEVGLGGRLDATNVVEKPLVSVITSIGLDH 155 (460) T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCEEEEECCCCHHH T ss_conf 99999999999987533101358777789999999999999850882899987376544554411386379972777688 Q ss_pred CCCCCCCHHHHHHHHHHHCCCCCCCCCCC-CCCHHHHHHHHHHHHHCC-CCCCCCCCCCCCCCCCC-----EEEEEECCC Q ss_conf 00027852344566653113798331544-471789889999862105-66523576321012585-----244431033 Q gi|254780821|r 155 EKILGNTVSAIAKDKSGIIKPGCPVVIGH-QVYDEVREILVSKAEKMG-CPYNVYGDDFYAFEKNK-----CLVYQDKIS 227 (429) Q Consensus 155 le~LG~tle~Ia~eKa~I~k~~~~~v~~~-~~~~~~~~~i~~~a~~~~-~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 227 (429) T Consensus 156 ~~~LG~t~~~IA~eKAGI~k~g~P~v~~~~~-~~ea~~v~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 234 (460) T TIGR01499 156 TEILGDTLEEIAWEKAGIIKEGVPIVTGEVQ-EPEALEVLKKKAEEKGAAPLQVVGKDFDIKEKDENLNGEKFSFSGENL 234 (460) T ss_pred HHHHCCCHHHHHHHHHHHHCCCCCEEEECCC-CHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCEEEECCCCC T ss_conf 8650533799999745762167656871488-668999999999971686046503413221111224652122235554 Q ss_pred CCCCC--CCCCCCCCCCCCHHHHHHHHHHHHH----CCHHHHCC-CCCCCCCCCCCEEEEECCCCCCCCCCCCEEEEECC Q ss_conf 33444--4443222211111469999875320----00011001-12222336653035422875444578745999336 Q gi|254780821|r 228 QTNLT--VLGLVGEHQYINAATAICAVQMAGF----TLEKECIN-AALQSVQWFGRLQKITEGPLLNKLPDHSEVWIDGG 300 (429) Q Consensus 228 ~~~~~--~l~l~G~hn~~Na~~Aiaa~~~lg~----~i~~~~I~-~gL~~~~~pGR~e~i~~~~~~~~~~~~~~viiD~A 300 (429) T Consensus 235 ~~~~~~~~~~L~G~~Q~~Na~~A~~~~~~l~~~~~~~~~~~~~~~~GL~~~~wpGR~e~~~~~~~~~-~-~~p~~~lDGA 312 (460) T TIGR01499 235 FLEPLLAKLSLLGDHQAENAALALAALEVLGKQSSEKLSEAAIRSEGLASTIWPGRLEILSEDKDAK-A-ANPNILLDGA 312 (460) T ss_pred CCHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCHH-H-CCCEEEEECC T ss_conf 2100135556567999999999999999850235666676678889888511122011330354122-3-3871799527 Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCE----EEEEEECCCCCCCCCCCCCHHHHHHHH Q ss_conf 3215799888654331147777124311346798989999988863888----999842288998421278989999999 Q gi|254780821|r 301 HNPNAGLVVSKEISKLKGSSNKPFYLVIGMVEGKKYGRYLEAFVELSPI----VLSVSLICRGRERQSISITPKVLMQEA 376 (429) Q Consensus 301 HNp~s~~~l~~~l~~l~~~~~~~i~~I~G~~~dKd~~~~l~~l~~~~d~----i~~~~~~~~~~~~~~~~~~~~~l~~~~ 376 (429) T Consensus 313 HNp~~~~~l~~~~~~-~~~~~~~~~~~~~~l~~Kd~~~~l~~L~~~~~~i~~~~~~~~-----~~~~~~a~~~~~~~~~~ 386 (460) T TIGR01499 313 HNPHSAEALVEWLKE-KEFNGRPITLLFGALADKDAAAMLALLRELVPKIFEEIVYVT-----PFDYPRALDAADLEAAA 386 (460) T ss_pred CCHHHHHHHHHHHHH-HHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCEEEEEC-----CCCCCCCCCHHHHHHHH T ss_conf 687899999999999-862699718888611368878998887874356522176861-----77862336757899999 Q ss_pred HHCCCC-----EEEECCHHHHHHHH---------------------HHHCCCCCCCEEEEECCHHHHHHHHHHC Q ss_conf 854997-----89969989999999---------------------9860358867999949779999999987 Q gi|254780821|r 377 KKLGFQ-----AMACSSMIEALSRV---------------------RKINEELPPPLILIAGSLYLAGEALREN 424 (429) Q Consensus 377 ~~~~~~-----~~~~~~~~eAi~~a---------------------~~~~~~~~~d~VLV~GS~ylvge~l~~~ 424 (429) T Consensus 387 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~lVtGSlyLvg~v~~~~ 460 (460) T TIGR01499 387 EAFGSEELEKAAETVSSWREALELAEKLDEAQKVSALIEIAYLLVALEKEKAKADDLILVTGSLYLVGEVRKLL 460 (460) T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHC T ss_conf 74054156677876730899997166787655102457789888888750567677378872599999999839 |
3.2.17 from EC (FPGS) is responsible for the addition of a polyglutamate tail to folate and folate derivatives, is an ATP-dependent enzyme isolated from eukaryotic and bacterial sources, where it plays a key role in the retention of the intracellular folate pool Its sequence is moderately conserved between prokaryotes (gene folC) and eukaryotes. FPGS belongs to a protein family that contains a number of related peptidoglycan synthetases (Mur) 6.3.2. from EC (see |
>COG0285 FolC Folylpolyglutamate synthase [Coenzyme metabolism] | Back alignment and domain information |
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Probab=100.00 E-value=0 Score=736.78 Aligned_cols=395 Identities=39% Similarity=0.594 Sum_probs=354.7 Q ss_pred CHHHHHHHHHHCCCHHHHCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEECCCCCCCEECCHHH Q ss_conf 88999999987299588359839994589847999999999999789351413784110120089888477871558899 Q gi|254780821|r 5 SLLKMGYLLEDLGRPQDRLPPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNERFRLGVKGGRGRLVEDVE 84 (429) Q Consensus 5 ~l~r~~~ll~~lg~P~~~~~~vI~VtGTnGKttt~~~i~~il~~~g~k~g~~tSPhl~~~~Eri~i~~~~~~g~~i~~~~ 84 (429) T Consensus 26 gL~Ri~~ll~~LGnP~~~~-~vIhVaGTNGKGSt~afl~siL~~aG~~VG~yTSPHL~~~~ERI~in-----g~~Isd~~ 99 (427) T COG0285 26 GLERISRLLERLGNPQKSP-PVIHVAGTNGKGSTCAFLESILREAGYKVGVYTSPHLLSFNERIRIN-----GEPISDEE 99 (427) T ss_pred CHHHHHHHHHHCCCCCCCC-CEEEEECCCCCHHHHHHHHHHHHHCCCCCEEECCCCCCCCCEEEEEC-----CEECCHHH T ss_conf 8499999999739972149-86999378984249999999999759871467887607642179999-----99888999 Q ss_pred HHHHHHHHHHCCC---CCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHCCCCCCC Q ss_conf 9999999863047---7677957899999998741144624777644475676413567751589860250000002785 Q gi|254780821|r 85 LLDVFRRVRRVKS---AQNLTIFELSIATALVLFSKYPADCAIIEVGLGGSLDATNIIEKVAVSVITSISLDHEKILGNT 161 (429) Q Consensus 85 ~~~~~~~i~~~~~---~~~~t~FE~lt~~a~~~f~~~~~d~~vlE~GlGGr~DaTnvi~~~~vavITnI~~DHle~LG~t 161 (429) T Consensus 100 ~~~~~~~ve~~~~~~~~~~~T~FE~~Ta~Af~~F~~~~vD~aIlEVGLGGRlDATNVi~-p~vsvIT~I~lDH~~~LG~t 178 (427) T COG0285 100 LAAAFERVEEAAGSLDLISLTYFEVLTAMAFLYFAEAKVDVAILEVGLGGRLDATNVIE-PDVSVITSIGLDHTAFLGDT 178 (427) T ss_pred HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCCC-CCEEEECCCCHHHHHHHCCC T ss_conf 99999999997523666787479999999999997689998999605566644322168-76689766472578886866 Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCC- Q ss_conf 2344566653113798331544471789889999862105665235763210125852444310333344444432222- Q gi|254780821|r 162 VSAIAKDKSGIIKPGCPVVIGHQVYDEVREILVSKAEKMGCPYNVYGDDFYAFEKNKCLVYQDKISQTNLTVLGLVGEH- 240 (429) Q Consensus 162 le~Ia~eKa~I~k~~~~~v~~~~~~~~~~~~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~h- 240 (429) T Consensus 179 ie~IA~EKAGI~k~g~P~v~~~~~~p~a~~vi~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~lp~l~~~~ 257 (427) T COG0285 179 LESIAREKAGIIKAGKPAVIGEQQPPEALNVIAERAEELGAPLFVLGPDFQVLEEGNGFSFQG-GGGLLDLPLPLLGGHH 257 (427) T ss_pred HHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHHHHHHCCCCEEECCCCHHHCCCCCEEEEEC-CCEEEEECCCCCCCCH T ss_conf 999999864012579957988889878999999998751897465173322104652688733-7704554166566305 Q ss_pred CCCCHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCC Q ss_conf 11111469999875320000110011222233665303542287544457874599933632157998886543311477 Q gi|254780821|r 241 QYINAATAICAVQMAGFTLEKECINAALQSVQWFGRLQKITEGPLLNKLPDHSEVWIDGGHNPNAGLVVSKEISKLKGSS 320 (429) Q Consensus 241 n~~Na~~Aiaa~~~lg~~i~~~~I~~gL~~~~~pGR~e~i~~~~~~~~~~~~~~viiD~AHNp~s~~~l~~~l~~l~~~~ 320 (429) T Consensus 258 Q~~NAa~Ai~al~~l~~~i~~~~i~~gl~~~~wpGR~e~l~~~p---------~i~lDgAHNp~aa~~La~~l~~~~~~~ 328 (427) T COG0285 258 QIENAALAIAALEALGKEISEEAIRKGLANVDWPGRLERLSENP---------LILLDGAHNPHAARALAETLKTLFNDR 328 (427) T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCEEEEECCCC---------EEEEECCCCHHHHHHHHHHHHHHHCCC T ss_conf 78889999999998314288999999998676873378833797---------499988899999999999999773357 Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHC Q ss_conf 77124311346798989999988863888999842288998421278989999999854997899699899999999860 Q gi|254780821|r 321 NKPFYLVIGMVEGKKYGRYLEAFVELSPIVLSVSLICRGRERQSISITPKVLMQEAKKLGFQAMACSSMIEALSRVRKIN 400 (429) Q Consensus 321 ~~~i~~I~G~~~dKd~~~~l~~l~~~~d~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~eAi~~a~~~~ 400 (429) T Consensus 329 ~~-~~~v~g~l~dKd~~~~l~~L~~~~~~~~~~~------~~~~ra~~~~~l~~~~~~~~~~~--~~~~~~a~~~~~~~~ 399 (427) T COG0285 329 PR-LTLVFGMLKDKDIAGMLAALLPIVDEIYTTP------LPWPRALDAEELLAFAGERGGVE--LDDVAEALELALEKA 399 (427) T ss_pred CC-EEEEEEEECCCCHHHHHHHHHCCCCEEEECC------CCCCCCCCHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHC T ss_conf 75-2899983258888999997406476899825------89735489999999987635785--003999999999715 Q ss_pred CCCCCCEEEEECCHHHHHHHHHHCCCC Q ss_conf 358867999949779999999987974 Q gi|254780821|r 401 EELPPPLILIAGSLYLAGEALRENGVR 427 (429) Q Consensus 401 ~~~~~d~VLV~GS~ylvge~l~~~g~~ 427 (429) T Consensus 400 --~~~~~ilV~GSly~~~ev~~~~~~~ 424 (427) T COG0285 400 --DEDDLVLVTGSLYLAGEVLELLKKR 424 (427) T ss_pred --CCCCEEEEEECHHHHHHHHHHHHCC T ss_conf --7997499982399999999996335 |
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>PRK10846 bifunctional folylpolyglutamate synthase/ dihydrofolate synthase; Provisional | Back alignment and domain information |
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Probab=100.00 E-value=0 Score=732.30 Aligned_cols=385 Identities=28% Similarity=0.402 Sum_probs=342.6 Q ss_pred CCHHHHHHHHHHCCCHHHHCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEECCCCCCCEECCHH Q ss_conf 88899999998729958835983999458984799999999999978935141378411012008988847787155889 Q gi|254780821|r 4 DSLLKMGYLLEDLGRPQDRLPPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNERFRLGVKGGRGRLVEDV 83 (429) Q Consensus 4 ~~l~r~~~ll~~lg~P~~~~~~vI~VtGTnGKttt~~~i~~il~~~g~k~g~~tSPhl~~~~Eri~i~~~~~~g~~i~~~ 83 (429) T Consensus 30 lgL~ri~~ll~~lg~p~~~~-~~IhVaGTNGKGSt~~~l~~il~~~G~~vG~ftSPHl~~~~ERi~in-----g~~Is~~ 103 (416) T PRK10846 30 LGLERVSQVAARLDVLKPAP-FVFTVAGTNGKGTTCRTLESILMAAGYRVGVYSSPHLVRYTERVRVQ-----GQELPES 103 (416) T ss_pred CCHHHHHHHHHHCCCCCCCC-CEEEEECCCCHHHHHHHHHHHHHHCCCCCCEECCCCCCCEEEEEEEC-----CCCCCHH T ss_conf 98599999999729986579-98999688557999999999999879973077888679510156799-----9128989 Q ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHCCCCCCCHH Q ss_conf 99999999863047767795789999999874114462477764447567641356775158986025000000278523 Q gi|254780821|r 84 ELLDVFRRVRRVKSAQNLTIFELSIATALVLFSKYPADCAIIEVGLGGSLDATNIIEKVAVSVITSISLDHEKILGNTVS 163 (429) Q Consensus 84 ~~~~~~~~i~~~~~~~~~t~FE~lt~~a~~~f~~~~~d~~vlE~GlGGr~DaTnvi~~~~vavITnI~~DHle~LG~tle 163 (429) T Consensus 104 ~~~~~~~~v~~~~~~~~lT~FE~~T~~A~~~F~~~~vD~aVlEvGLGGrlDATNvi~-~~vsvIT~IglDH~~~LG~Tle 182 (416) T PRK10846 104 AHTASFAEIEAARGDISLTYFEYGTLSALWLFKQAQLDVVILEVGLGGRLDATNIVD-ADVAVITSIALDHTDWLGPDRE 182 (416) T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCEEEHHHCCCC-CCEEEECCCCHHHHHHHCCCHH T ss_conf 999999998875068887699999999999998569998999835751343213888-8779988704764200179999 Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCC Q ss_conf 44566653113798331544471789889999862105665235763210125852444310333344444432222111 Q gi|254780821|r 164 AIAKDKSGIIKPGCPVVIGHQVYDEVREILVSKAEKMGCPYNVYGDDFYAFEKNKCLVYQDKISQTNLTVLGLVGEHQYI 243 (429) Q Consensus 164 ~Ia~eKa~I~k~~~~~v~~~~~~~~~~~~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~ 243 (429) T Consensus 183 ~IA~EKAGIik~g~pvV~g~~---~~~~~i~~~a~~~~a~l~~~~~d~~~~~~~~~~~~~~~~~~~~--~l~l~-~~~~~ 256 (416) T PRK10846 183 SIGREKAGIFRSEKPAVVGEP---EMPSTIADVAQEKGALLQRRGVDWNYSVTDHDWAFSDGDGTLE--NLPLP-NVPQP 256 (416) T ss_pred HHHHHHHHHHCCCCEEEECCC---CHHHHHHHHHHHCCCCEEECCCCEEEEECCCEEEEECCCCCCC--CCCCC-HHHHH T ss_conf 999987534227980898585---3789999999970997798178407985387379975886252--48886-57999 Q ss_pred CHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCC Q ss_conf 11469999875320000110011222233665303542287544457874599933632157998886543311477771 Q gi|254780821|r 244 NAATAICAVQMAGFTLEKECINAALQSVQWFGRLQKITEGPLLNKLPDHSEVWIDGGHNPNAGLVVSKEISKLKGSSNKP 323 (429) Q Consensus 244 Na~~Aiaa~~~lg~~i~~~~I~~gL~~~~~pGR~e~i~~~~~~~~~~~~~~viiD~AHNp~s~~~l~~~l~~l~~~~~~~ 323 (429) T Consensus 257 Naa~Al~al~~~~~~i~~~~i~~gL~~~~wpGR~e~i~~~p---------~iiLDgAHN~~aa~~L~~~l~~~~--~~~k 325 (416) T PRK10846 257 NAATALAALRASGLEVSENAIRDGIASAILPGRFQIVSESP---------RVIFDVAHNPHAAEYLTGRLKALP--KNGR 325 (416) T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCEEEECCCC---------CEEEECCCCHHHHHHHHHHHHHCC--CCCC T ss_conf 99999999997399999999999998577787512414798---------577777859999999999999607--7996 Q ss_pred EEEEECCCCCCCHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHCCCC Q ss_conf 24311346798989999988863888999842288998421278989999999854997899699899999999860358 Q gi|254780821|r 324 FYLVIGMVEGKKYGRYLEAFVELSPIVLSVSLICRGRERQSISITPKVLMQEAKKLGFQAMACSSMIEALSRVRKINEEL 403 (429) Q Consensus 324 i~~I~G~~~dKd~~~~l~~l~~~~d~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~eAi~~a~~~~~~~ 403 (429) T Consensus 326 ~~~V~g~l~dKD~~~~l~~L~~~~d~~~~~~~------~~~Ra~~~~~L~~~l~~----~~~~~~~~~A~~~al~~a--~ 393 (416) T PRK10846 326 VLAVIGMLHDKDIAGTLAWLKSVVDDWYCAPL------EGPRGATAEQLLEHLGN----GKSFDSVAQAWDAAMADA--K 393 (416) T ss_pred EEEEEECCCCCCHHHHHHHHHHHCCEEEEECC------CCCCCCCHHHHHHHHHC----CCCCCCHHHHHHHHHHHC--C T ss_conf 89998413789999999986644689999589------99777999999998602----766699999999999847--9 Q ss_pred CCCEEEEECCHHHHHHHHHHC Q ss_conf 867999949779999999987 Q gi|254780821|r 404 PPPLILIAGSLYLAGEALREN 424 (429) Q Consensus 404 ~~d~VLV~GS~ylvge~l~~~ 424 (429) T Consensus 394 ~~d~IlV~GSlYLvgevl~~L 414 (416) T PRK10846 394 PEDTVLVCGSFHTVAHVMEVI 414 (416) T ss_pred CCCEEEEECHHHHHHHHHHHH T ss_conf 998599971399999999986 |
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>KOG2525 consensus | Back alignment and domain information |
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Probab=100.00 E-value=0 Score=592.16 Aligned_cols=392 Identities=31% Similarity=0.399 Sum_probs=317.3 Q ss_pred CCCHHHHHHHHHHCCCH--HHHCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEECCCCCCCEEC Q ss_conf 78889999999872995--8835983999458984799999999999978935141378411012008988847787155 Q gi|254780821|r 3 ADSLLKMGYLLEDLGRP--QDRLPPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNERFRLGVKGGRGRLV 80 (429) Q Consensus 3 ~~~l~r~~~ll~~lg~P--~~~~~~vI~VtGTnGKttt~~~i~~il~~~g~k~g~~tSPhl~~~~Eri~i~~~~~~g~~i 80 (429) T Consensus 50 ~~~l~~m~~~L~~lg~p~d~~~l-~iIHVAGTkGKGStcaF~~SILr~~g~rtG~yTSPHLl~vrErIriN-----GqpI 123 (496) T KOG2525 50 GLTLPRMRKLLERLGNPEDQNSL-NIIHVAGTKGKGSTCAFTESILRQQGLRTGFYTSPHLLSVRERIRIN-----GQPI 123 (496) T ss_pred CCCHHHHHHHHHHHCCHHHHHHE-EEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHCCHHHEEEEC-----CEEC T ss_conf 35799999999970986544322-47998237898645898999998426366322680015532458889-----9878 Q ss_pred CHHHHHHHHHHHHHCC------CCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHH Q ss_conf 8899999999986304------7767795789999999874114462477764447567641356775158986025000 Q gi|254780821|r 81 EDVELLDVFRRVRRVK------SAQNLTIFELSIATALVLFSKYPADCAIIEVGLGGSLDATNIIEKVAVSVITSISLDH 154 (429) Q Consensus 81 ~~~~~~~~~~~i~~~~------~~~~~t~FE~lt~~a~~~f~~~~~d~~vlE~GlGGr~DaTnvi~~~~vavITnI~~DH 154 (429) T Consensus 124 S~e~F~~~f~~v~~~lk~~~~~~~~~p~yF~fLT~lAF~~F~~enVdvaViEvGlGG~~DaTNvI~kpvvcgITslG~DH 203 (496) T KOG2525 124 SEEKFTKYFWEVYERLKSTKLKEVSMPTYFEFLTLLAFHVFVKENVDVAVIEVGLGGELDATNVIEKPVVCGITSLGLDH 203 (496) T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHEEEEECCCCEEEEEECCCCCCCCCCCCCCCEEEEEEECCCCH T ss_conf 99999999999999887763065678735556675442015555886899984356665665331364589984057752 Q ss_pred CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCC Q ss_conf 00027852344566653113798331544471789889999862105665235763210125852444310333344444 Q gi|254780821|r 155 EKILGNTVSAIAKDKSGIIKPGCPVVIGHQVYDEVREILVSKAEKMGCPYNVYGDDFYAFEKNKCLVYQDKISQTNLTVL 234 (429) Q Consensus 155 le~LG~tle~Ia~eKa~I~k~~~~~v~~~~~~~~~~~~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 234 (429) T Consensus 204 ~~~LG~tL~eIA~eKAGIfK~gvpaft~~-q~~e~~nvL~~ra~e~~~~L~~v~p~~~~~ls--------------~~~l 268 (496) T KOG2525 204 TSFLGNTLSEIAWEKAGIFKEGVPAFTVP-QPPEALNVLKERASELGVPLFVVPPLEAYELS--------------GVNL 268 (496) T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCEEECC-CCHHHHHHHHHHHHHCCCCCEECCCCHHHHHC--------------CCCC T ss_conf 88886589999887446240588548758-85788999999887337883553881465504--------------8765 Q ss_pred CCCCCCCCCCHHHHHHHHHHH----H-----------HC--CHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCEEEE Q ss_conf 432222111114699998753----2-----------00--001100112222336653035422875444578745999 Q gi|254780821|r 235 GLVGEHQYINAATAICAVQMA----G-----------FT--LEKECINAALQSVQWFGRLQKITEGPLLNKLPDHSEVWI 297 (429) Q Consensus 235 ~l~G~hn~~Na~~Aiaa~~~l----g-----------~~--i~~~~I~~gL~~~~~pGR~e~i~~~~~~~~~~~~~~vii 297 (429) T Consensus 269 gl~g~hq~~na~lA~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~l~GL~~~~wPGR~qil~~-------~~~~~~ll 340 (496) T KOG2525 269 GLIGTHQWSNASLAVQLASEWLIQNGRVAEGVLDALQTSGLIPP-AFLSGLASTDWPGRLQILEY-------GRGVTWLL 340 (496) T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCH-HHHCCHHHCCCCCCEEEEEC-------CCCCEEEE T ss_conf 40065134435789888999998638501057873223667898-99612032457870689862-------89857996 Q ss_pred ECCCCHHHHHHHHHHHHH-HCCCCCCC-EEEEECCCCCCCHHHHHHHHHH------HCCEEEEEEECCCCCCCCCC---- Q ss_conf 336321579988865433-11477771-2431134679898999998886------38889998422889984212---- Q gi|254780821|r 298 DGGHNPNAGLVVSKEISK-LKGSSNKP-FYLVIGMVEGKKYGRYLEAFVE------LSPIVLSVSLICRGRERQSI---- 365 (429) Q Consensus 298 D~AHNp~s~~~l~~~l~~-l~~~~~~~-i~~I~G~~~dKd~~~~l~~l~~------~~d~i~~~~~~~~~~~~~~~---- 365 (429) T Consensus 341 DGAHt~eSaea~~~w~~~~~~~~~~~~~~illfn~t~~~d~~~Ll~~L~~~~~~~~~F~~Vvf~Pni~~~~~~~~~d~~~ 420 (496) T KOG2525 341 DGAHTKESAEACAKWFRKAVRGLKKLTSLILLFNCTSDRDPPLLLPLLKPDAVIGTRFSSVVFMPNITSSSPVGSADSIS 420 (496) T ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCCCHHHHH T ss_conf 58999899999999999985367776526999980377664767677454654344514178524431158766645541 Q ss_pred -CC-------CHHHHHHHHHHCC-------CCEEEECCHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHCC Q ss_conf -78-------9899999998549-------978996998999999998603588679999497799999999879 Q gi|254780821|r 366 -SI-------TPKVLMQEAKKLG-------FQAMACSSMIEALSRVRKINEELPPPLILIAGSLYLAGEALRENG 425 (429) Q Consensus 366 -~~-------~~~~l~~~~~~~~-------~~~~~~~~~~eAi~~a~~~~~~~~~d~VLV~GS~ylvge~l~~~g 425 (429) T Consensus 421 ~~~s~~~~l~~q~~L~~~w~~l~~~~~~~~~~~~V~~sL~~a~~~Lr~~~~~--s~~~~V~gslhlvg~vl~~l~ 493 (496) T KOG2525 421 LNTSTEEQLNWQNDLQSVWEELKESEGKTEDPSIVFGSLYLAYELLRDDQHL--SPRIEVLGSLHLVGGVLVLLD 493 (496) T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHCCCC--CCEEEEEEEEEEECHHHHHHH T ss_conf 5677268777758999999998655887313236734599999999842777--770899988987014766532 |
|
>TIGR01085 murE UDP-N-acetylmuramyl-tripeptide synthetases; InterPro: IPR005761 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment | Back alignment and domain information |
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Probab=100.00 E-value=0 Score=424.22 Aligned_cols=362 Identities=20% Similarity=0.256 Sum_probs=259.4 Q ss_pred HHHHHHHHHHC-CCHHHHCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEECCCCCCCEECCHHH Q ss_conf 89999999872-99588359839994589847999999999999789351413784110120089888477871558899 Q gi|254780821|r 6 LLKMGYLLEDL-GRPQDRLPPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNERFRLGVKGGRGRLVEDVE 84 (429) Q Consensus 6 l~r~~~ll~~l-g~P~~~~~~vI~VtGTnGKttt~~~i~~il~~~g~k~g~~tSPhl~~~~Eri~i~~~~~~g~~i~~~~ 84 (429) T Consensus 70 r~~~~~~A~~fY~~Ps~~l-~viGvTGTNGKTtt~~li~~~l~~~G~~tgliGT-----------~g~~~~g~~~~~--- 134 (494) T TIGR01085 70 RHALSSLAAAFYGHPSKKL-KVIGVTGTNGKTTTTSLIAQLLELLGKKTGLIGT-----------IGYRLGGNELIK--- 134 (494) T ss_pred HHHHHHHHHHHHCCCCCCE-EEEEEEECCCCHHHHHHHHHHHHHCCCEEEEEEE-----------EEEECCCCCCCC--- T ss_conf 5888999999734855251-6899971287448999999999867970899865-----------453047763126--- Q ss_pred HHHHHHHHHHCCCCCCCCHHHHHHH-HHHHHHHCCCCCHHHHHH---HHH-H--HHHHHCCCCCCCEEEEEECCCHHCCC Q ss_conf 9999999863047767795789999-999874114462477764---447-5--67641356775158986025000000 Q gi|254780821|r 85 LLDVFRRVRRVKSAQNLTIFELSIA-TALVLFSKYPADCAIIEV---GLG-G--SLDATNIIEKVAVSVITSISLDHEKI 157 (429) Q Consensus 85 ~~~~~~~i~~~~~~~~~t~FE~lt~-~a~~~f~~~~~d~~vlE~---GlG-G--r~DaTnvi~~~~vavITnI~~DHle~ 157 (429) T Consensus 135 ------------~~~~~TTP~~~~~q~~L~~~~~~g~~~~v~EvSSHaL~q~TARV~~~~----F~~~vFTNl~~DHLDf 198 (494) T TIGR01085 135 ------------DPASLTTPEALTLQKTLAEMVEAGAQYAVMEVSSHALAQGTARVEGVD----FDAAVFTNLTRDHLDF 198 (494) T ss_pred ------------CCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEHHHHHCCCCEEECCE----EEEEEEECCCHHHHHH T ss_conf ------------655567997189999999999659979999863012421421110211----5799960788302340 Q ss_pred CCCCHHHHHHHHHHHCCC-C--------CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCC-------CCCCCCC---- Q ss_conf 278523445666531137-9--------8331544471789889999862105665235763-------2101258---- Q gi|254780821|r 158 LGNTVSAIAKDKSGIIKP-G--------CPVVIGHQVYDEVREILVSKAEKMGCPYNVYGDD-------FYAFEKN---- 217 (429) Q Consensus 158 LG~tle~Ia~eKa~I~k~-~--------~~~v~~~~~~~~~~~~i~~~a~~~~~~~~~~~~~-------~~~~~~~---- 217 (429) T Consensus 199 Hg-tmEnY~~aK~~LF~~~~~~~~~~~~~~aV~n~d-D~~~~~f~~~~~~~~~~~~~~~~A~~R~~~~~~~~~~~~~~~~ 276 (494) T TIGR01085 199 HG-TMENYFAAKAKLFTELGLKSDRRRARFAVINLD-DEYGAQFVKRLPKDITVSAITQKADWRGKAQDIKITDSGYSFE 276 (494) T ss_pred CC-CHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEC-CHHHHHHHHHHHHHCEEEEEEECCCCCCCCCCCHHHCCCCEEE T ss_conf 33-489999999852440013677535661158864-5446999861025225778850421263112401100001034 Q ss_pred -CEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHCCCCCCCCC-CCCCEEEEECCCCCCCCCCCCEE Q ss_conf -5244431033334444443222211111469999875320000110011222233-66530354228754445787459 Q gi|254780821|r 218 -KCLVYQDKISQTNLTVLGLVGEHQYINAATAICAVQMAGFTLEKECINAALQSVQ-WFGRLQKITEGPLLNKLPDHSEV 295 (429) Q Consensus 218 -~~~~~~~~~~~~~~~~l~l~G~hn~~Na~~Aiaa~~~lg~~i~~~~I~~gL~~~~-~pGR~e~i~~~~~~~~~~~~~~v 295 (429) T Consensus 277 G~~~~~~~~~g~~~~~~~~LiG~FNv~N~lAa~a~~~~~g-g~~~~~~~~~l~~~~gv~GRmE~v~~~~------~~f~V 349 (494) T TIGR01085 277 GQSFTFETPAGVEFKLHTPLIGRFNVYNLLAALATLLHLG-GIDLEDIVAALEKLRGVPGRMELVDGGQ------QKFLV 349 (494) T ss_pred EEEEEEECCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHCCCCCCCCEEECCCC------CCCEE T ss_conf 5666752467520688753613688999999999999733-8889999989873489987312302789------99607 Q ss_pred EEECCCCHHHHHHHHHHHHHHC-CCCCCCEEEEECCCCCCCHH---HHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHH Q ss_conf 9933632157998886543311-47777124311346798989---9999888638889998422889984212789899 Q gi|254780821|r 296 WIDGGHNPNAGLVVSKEISKLK-GSSNKPFYLVIGMVEGKKYG---RYLEAFVELSPIVLSVSLICRGRERQSISITPKV 371 (429) Q Consensus 296 iiD~AHNp~s~~~l~~~l~~l~-~~~~~~i~~I~G~~~dKd~~---~~l~~l~~~~d~i~~~~~~~~~~~~~~~~~~~~~ 371 (429) T Consensus 350 ~VDYAHTPDaLek~L~~lr~~~~~~~~g~L~~vFGcGGdRDr~KRplMG~iA~~~AD~~ilT~DNPR~Edp~~I---~~D 426 (494) T TIGR01085 350 IVDYAHTPDALEKVLRTLRAIKLKHKKGRLIVVFGCGGDRDRGKRPLMGAIAEQLADLIILTSDNPRSEDPEQI---IAD 426 (494) T ss_pred EEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHCCEEEEECCCCCCCCHHHH---HHH T ss_conf 99714880589999999999984258982799981578998445758999999829868983688545797999---999 Q ss_pred HHHHHHHCC--CCEEEECCHHHHHHHHHHHCCCCCCCEEEEEC Q ss_conf 999998549--97899699899999999860358867999949 Q gi|254780821|r 372 LMQEAKKLG--FQAMACSSMIEALSRVRKINEELPPPLILIAG 412 (429) Q Consensus 372 l~~~~~~~~--~~~~~~~~~~eAi~~a~~~~~~~~~d~VLV~G 412 (429) T Consensus 427 i~~G~~~~~~~~~~~~i~DR~~AI~~Ai~~A--~~gD~VLiAG 467 (494) T TIGR01085 427 ILAGISEKEKDKDVVIIADRRQAIRKAISNA--KAGDVVLIAG 467 (494) T ss_pred HHHHCCCCCCCCCEEEEHHHHHHHHHHHHHH--CCCCEEEEEC T ss_conf 9971477666751589601789999999840--4798899961 |
The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) , MurD (6.3.2.9 from EC) , MurE (6.3.2.13 from EC) and MurF (6.3.2.10 from EC) . These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales . This entry represents DP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligases (MurE; 6.3.2.13 from EC). An exception is found with Staphylococcus aureus, in which diaminopimelate is replaced by lysine in the peptidoglycan and MurE is (6.3.2.7 from EC). The Mycobacteria, part of the closest neighbouring branch outside of the low-GC Gram-positive bacteria, use diaminopimelate.; GO: 0005524 ATP binding, 0016881 acid-amino acid ligase activity, 0008360 regulation of cell shape, 0009252 peptidoglycan biosynthetic process, 0009273 peptidoglycan-based cell wall biogenesis, 0051301 cell division, 0005737 cytoplasm. |
>PRK11929 putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase; Provisional | Back alignment and domain information |
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Probab=100.00 E-value=0 Score=394.45 Aligned_cols=357 Identities=23% Similarity=0.264 Sum_probs=253.0 Q ss_pred CCCHHHHHHHHHHC-CCHHHHCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEECCCCCCCEECC Q ss_conf 78889999999872-99588359839994589847999999999999789351413784110120089888477871558 Q gi|254780821|r 3 ADSLLKMGYLLEDL-GRPQDRLPPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNERFRLGVKGGRGRLVE 81 (429) Q Consensus 3 ~~~l~r~~~ll~~l-g~P~~~~~~vI~VtGTnGKttt~~~i~~il~~~g~k~g~~tSPhl~~~~Eri~i~~~~~~g~~i~ 81 (429) T Consensus 90 ~d~r~al~~la~~fy~~ps~~l-~vigVTGTNGKTTt~~~i~~il~~~g~~~~~i--------------GTl---g~~~~ 151 (953) T PRK11929 90 ADLRKALGELADEWYGKPSQDL-SVVAVTGTNGKTSCAQWLAQMLTRLGKPCGSI--------------GTL---GARLP 151 (953) T ss_pred CCHHHHHHHHHHHHHCCCCCCC-CEEEEECCCCHHHHHHHHHHHHHHCCCCEEEE--------------CCC---CEECC T ss_conf 9899999999999864967588-78999799979999999999998679988998--------------324---54058 Q ss_pred HHHHHHHHHHHHHCCCCCCCCHHHHHHHH-HHHHHHCCCCCHHHHHH---HHH-HHHHHHCCCCCCCEEEEEECCCHHCC Q ss_conf 89999999998630477677957899999-99874114462477764---447-56764135677515898602500000 Q gi|254780821|r 82 DVELLDVFRRVRRVKSAQNLTIFELSIAT-ALVLFSKYPADCAIIEV---GLG-GSLDATNIIEKVAVSVITSISLDHEK 156 (429) Q Consensus 82 ~~~~~~~~~~i~~~~~~~~~t~FE~lt~~-a~~~f~~~~~d~~vlE~---GlG-Gr~DaTnvi~~~~vavITnI~~DHle 156 (429) T Consensus 152 ~~~-----------~~~~~~TTP~~~~l~~~l~~~~~~g~~~~vmEvSSHgL~q~Rv~gi----~fdvaifTNls~DHLD 216 (953) T PRK11929 152 DGQ-----------SLGGSLTTPDVITLHRLLARMRAAGADAVAMEASSHGLEQGRLDGI----RFAVAGFTNLTRDHLD 216 (953) T ss_pred CCC-----------CCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHCCC----CCCEEEEECCCHHHHH T ss_conf 764-----------4678999948999999999999769979999833067764342087----8788999479767866 Q ss_pred CCCCCHHHHHHHHHHHCC---CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCC---CCCCCC-----CCCCCEEEEEEC Q ss_conf 027852344566653113---798331544471789889999862105665235---763210-----125852444310 Q gi|254780821|r 157 ILGNTVSAIAKDKSGIIK---PGCPVVIGHQVYDEVREILVSKAEKMGCPYNVY---GDDFYA-----FEKNKCLVYQDK 225 (429) Q Consensus 157 ~LG~tle~Ia~eKa~I~k---~~~~~v~~~~~~~~~~~~i~~~a~~~~~~~~~~---~~~~~~-----~~~~~~~~~~~~ 225 (429) T Consensus 217 yH~-tme~Y~~aK~~LF~~l~~~~~aViN~D-d~~~~~l~-~~~~~~~~~~~~~~~~~ad~~~~~i~~~~~g~~f~l~~~ 293 (953) T PRK11929 217 YHG-TMEDYEQAKAALFEQWPPLGAAVINAD-DPAGERLL-ASLPAALLTGYALQGSPADVHAYDLQATAHGQVFTLALP 293 (953) T ss_pred HCC-CHHHHHHHHHHHHHHHHCCCEEEEECC-CHHHHHHH-HHCCCCCEEEEECCCCCCCEEEEEEEECCCCCEEEEEEC T ss_conf 548-999999999999987410866999798-88899999-871278589993367877489999998289868999978 Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHCCCCCCCCC-CCCCEEEEECCCCCCCCCCCCEEEEECCCCHH Q ss_conf 33334444443222211111469999875320000110011222233-66530354228754445787459993363215 Q gi|254780821|r 226 ISQTNLTVLGLVGEHQYINAATAICAVQMAGFTLEKECINAALQSVQ-WFGRLQKITEGPLLNKLPDHSEVWIDGGHNPN 304 (429) Q Consensus 226 ~~~~~~~~l~l~G~hn~~Na~~Aiaa~~~lg~~i~~~~I~~gL~~~~-~pGR~e~i~~~~~~~~~~~~~~viiD~AHNp~ 304 (429) T Consensus 294 ~~-~~~~~~~L~G~fNv~N~laA~a~~~~~g~~~--~~i~~~l~~~~~vpGRmE~v~~~~----~~~~~~viVDYAHTpd 366 (953) T PRK11929 294 DG-EAQIVTGLLGRHNISNLLLVAGALSKLGWPL--PQIARELAAVSPVDGRLERVGPTA----SAQGPLVVVDYAHTPD 366 (953) T ss_pred CC-EEEEEECCCCHHHHHHHHHHHHHHHHCCCCH--HHHHHHHHHCCCCCCCEEEEECCC----CCCCCEEEEECCCCHH T ss_conf 92-7999806863124999999999999839999--999998861799888759961566----6789669998678989 Q ss_pred HHHHHHHHHHHHCCCCCCCEEEEECCCCCCCH---HHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHH--- Q ss_conf 79988865433114777712431134679898---999998886388899984228899842127898999999985--- Q gi|254780821|r 305 AGLVVSKEISKLKGSSNKPFYLVIGMVEGKKY---GRYLEAFVELSPIVLSVSLICRGRERQSISITPKVLMQEAKK--- 378 (429) Q Consensus 305 s~~~l~~~l~~l~~~~~~~i~~I~G~~~dKd~---~~~l~~l~~~~d~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 378 (429) T Consensus 367 Al~~~L~~lr~~~~-~~~rli~VfGcgGdRD~~KRp~Mg~iA~~~aD~viiT~DNPR~-------Edp~~I~~dI~~g~~ 438 (953) T PRK11929 367 ALARALTALRPVAE-ANGRLVCVFGCGGNRDKGKRPEMGRIAAELADRVIVTSDNPRD-------EAPEDIIDQILAGIP 438 (953) T ss_pred HHHHHHHHHHHHHC-CCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCEEEECCCCCCC-------CCHHHHHHHHHHCCC T ss_conf 99999999997614-6980999989878776103489999999849989986899899-------999999999985656 Q ss_pred CCCCEEEECCHHHHHHHHHHHCCCCCCCEEEEEC Q ss_conf 4997899699899999999860358867999949 Q gi|254780821|r 379 LGFQAMACSSMIEALSRVRKINEELPPPLILIAG 412 (429) Q Consensus 379 ~~~~~~~~~~~~eAi~~a~~~~~~~~~d~VLV~G 412 (429) T Consensus 439 ~~~~~~~i~dR~~AI~~ai~~a--~~~D~vliaG 470 (953) T PRK11929 439 AGARALRQSDRALAIMQAIWMA--KPGDVILLAG 470 (953) T ss_pred CCCCEEEECCHHHHHHHHHHHC--CCCCEEEEEE T ss_conf 6886699779999999999847--9999899987 |
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>PRK00139 murE UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase; Provisional | Back alignment and domain information |
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Probab=100.00 E-value=0 Score=390.72 Aligned_cols=349 Identities=22% Similarity=0.235 Sum_probs=247.2 Q ss_pred CCCCHHHHHHHHHHC-CCHHHHCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEECCCCCCCEEC Q ss_conf 778889999999872-9958835983999458984799999999999978935141378411012008988847787155 Q gi|254780821|r 2 AADSLLKMGYLLEDL-GRPQDRLPPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNERFRLGVKGGRGRLV 80 (429) Q Consensus 2 ~~~~l~r~~~ll~~l-g~P~~~~~~vI~VtGTnGKttt~~~i~~il~~~g~k~g~~tSPhl~~~~Eri~i~~~~~~g~~i 80 (429) T Consensus 78 V~d~~~al~~la~~~y~~~~~~l-~vIgITGTnGKTTt~~~l~~iL~~~g~~~~~igT-----------~------g~~~ 139 (481) T PRK00139 78 VPDLRRALALLAAAFYGNPSDKL-KLIGVTGTNGKTTTAYLIAQILRLLGKKAALIGT-----------L------GNGL 139 (481) T ss_pred ECCHHHHHHHHHHHHHCCCHHCC-CEEEEECCCCCHHHHHHHHHHHHHCCCCCEEECC-----------C------CEEC T ss_conf 89999999999999870804318-0899958998434999999999874986314302-----------2------1141 Q ss_pred CHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH-HHHHHCCCCCHHHHHH---HHH-HHHHHHCCCCCCCEEEEEECCCHHC Q ss_conf 8899999999986304776779578999999-9874114462477764---447-5676413567751589860250000 Q gi|254780821|r 81 EDVELLDVFRRVRRVKSAQNLTIFELSIATA-LVLFSKYPADCAIIEV---GLG-GSLDATNIIEKVAVSVITSISLDHE 155 (429) Q Consensus 81 ~~~~~~~~~~~i~~~~~~~~~t~FE~lt~~a-~~~f~~~~~d~~vlE~---GlG-Gr~DaTnvi~~~~vavITnI~~DHl 155 (429) T Consensus 140 ~~~------------~~~~~lTTP~~l~L~~~l~~~~e~g~~~~vmEvSShgl~q~Rv~g---i-~fdiav~TNIs~DHL 203 (481) T PRK00139 140 GGT------------LIPSGLTTPEALDLQRLLAEAVDAGATHVAMEVSSHALDQGRVDG---L-TFDVAVFTNLTRDHL 203 (481) T ss_pred CCE------------ECCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECHHHHHHCCCCC---C-CCCEEEEECCCHHHH T ss_conf 873------------036678988768899999999987997799984303555221348---8-756899965767785 Q ss_pred CCCCCCHHHHHHHHHHHCCC--CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCC-----CCCCCC-----CCCCEEEEE Q ss_conf 00278523445666531137--983315444717898899998621056652357-----632101-----258524443 Q gi|254780821|r 156 KILGNTVSAIAKDKSGIIKP--GCPVVIGHQVYDEVREILVSKAEKMGCPYNVYG-----DDFYAF-----EKNKCLVYQ 223 (429) Q Consensus 156 e~LG~tle~Ia~eKa~I~k~--~~~~v~~~~~~~~~~~~i~~~a~~~~~~~~~~~-----~~~~~~-----~~~~~~~~~ 223 (429) T Consensus 204 D~Hg-s~e~Y~~aK~~Lf~~~~~~~aViN~D-D~~~~~~~-~~---~~~~~it~g~~~~~ad~~~~~i~~~~~g~~f~l~ 277 (481) T PRK00139 204 DYHG-TMEDYFAAKALLFAELGLKAAVINAD-DEVGARLL-AA---LPATVVTYSIEDHGADLRATDIEFSAQGVSFTLV 277 (481) T ss_pred CCCC-CHHHHHHHHHHHHHCCCCCCEEEECC-CHHHHHHH-HH---CCCCCCEECCCCCCCEEEEEEEEECCCCEEEEEE T ss_conf 3437-89999999999974657882499468-88999999-97---1788525404788860899999984896199999 Q ss_pred ECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHCCCCCCCCC-CCCCEEEEECCCCCCCCCCCCEEEEECCCC Q ss_conf 1033334444443222211111469999875320000110011222233-665303542287544457874599933632 Q gi|254780821|r 224 DKISQTNLTVLGLVGEHQYINAATAICAVQMAGFTLEKECINAALQSVQ-WFGRLQKITEGPLLNKLPDHSEVWIDGGHN 302 (429) Q Consensus 224 ~~~~~~~~~~l~l~G~hn~~Na~~Aiaa~~~lg~~i~~~~I~~gL~~~~-~pGR~e~i~~~~~~~~~~~~~~viiD~AHN 302 (429) T Consensus 278 ~~~-~~~~v~l~l~G~hNv~NalaAiava~~lGi~--~~~i~~~L~~~~~v~GRmE~i~~-------~~~~~vivDYAHt 347 (481) T PRK00139 278 TPW-GEGEVESPLIGRFNVSNLLAAIAALLALGVP--LEDILKALAKLRPVPGRMERVGA-------GGGPLVIVDYAHT 347 (481) T ss_pred ECC-EEEEEEECCCCHHHHHHHHHHHHHHHHCCCC--HHHHHHHHHCCCCCCCCCEEEEC-------CCCCEEEEECCCC T ss_conf 589-3799996788788898799999999983989--89999998349999998689987-------9996899976899 Q ss_pred HHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHH---HHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHH- Q ss_conf 15799888654331147777124311346798989---99998886388899984228899842127898999999985- Q gi|254780821|r 303 PNAGLVVSKEISKLKGSSNKPFYLVIGMVEGKKYG---RYLEAFVELSPIVLSVSLICRGRERQSISITPKVLMQEAKK- 378 (429) Q Consensus 303 p~s~~~l~~~l~~l~~~~~~~i~~I~G~~~dKd~~---~~l~~l~~~~d~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 378 (429) T Consensus 348 P~sl~~~L~~lr~~---~~~rli~VfG~gG~Rd~~KR~~mg~ia~~~ad~vi~T~DnPr~-------Edp~~I~~~i~~g 417 (481) T PRK00139 348 PDALEKVLDALRPH---AKGRLICVFGCGGDRDKGKRPLMGAIAERLADVVIVTSDNPRS-------EDPAAIIADILAG 417 (481) T ss_pred HHHHHHHHHHHHHH---CCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCEEEECCCCCCC-------CCHHHHHHHHHHC T ss_conf 89999999999876---4898699989867777014189999999719989993999899-------8999999999826 Q ss_pred -CCCCEEEECCHHHHHHHHHHHCCCCCCCEEEEEC Q ss_conf -4997899699899999999860358867999949 Q gi|254780821|r 379 -LGFQAMACSSMIEALSRVRKINEELPPPLILIAG 412 (429) Q Consensus 379 -~~~~~~~~~~~~eAi~~a~~~~~~~~~d~VLV~G 412 (429) T Consensus 418 ~~~~~~~~i~dR~~AI~~ai~~a--~~~d~vliaG 450 (481) T PRK00139 418 ITHANAVVIEDRAEAIKYAIALA--KPGDVVLIAG 450 (481) T ss_pred CCCCCEEEECCHHHHHHHHHHHC--CCCCEEEEEE T ss_conf 98799289789999999999855--9999999973 |
|
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional | Back alignment and domain information |
---|
Probab=100.00 E-value=0 Score=316.83 Aligned_cols=327 Identities=19% Similarity=0.209 Sum_probs=224.0 Q ss_pred CCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEECCCCCCCEECCHHHHHHHHHHHHHCCCCCCCCH Q ss_conf 98399945898479999999999997893514137841101200898884778715588999999999863047767795 Q gi|254780821|r 24 PPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNERFRLGVKGGRGRLVEDVELLDVFRRVRRVKSAQNLTI 103 (429) Q Consensus 24 ~~vI~VtGTnGKttt~~~i~~il~~~g~k~g~~tSPhl~~~~Eri~i~~~~~~g~~i~~~~~~~~~~~i~~~~~~~~~t~ 103 (429) T Consensus 108 ~~~IaVtGTnGKTTtT~ll~~il~~~g~~~~~~-------------iGg~~--~~~~~----------------~~---- 152 (459) T PRK00421 108 RTSIAVAGTHGKTTTTSLLAHVLAEAGLDPTFI-------------IGGIL--NAAGT----------------NA---- 152 (459) T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEE-------------ECCCC--CCCCC----------------CC---- T ss_conf 964999778886118999999999769987488-------------57533--55665----------------45---- Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHCCCCCCCHHHHHHHHHHHC---CCCCCCC Q ss_conf 7899999998741144624777644475676413567751589860250000002785234456665311---3798331 Q gi|254780821|r 104 FELSIATALVLFSKYPADCAIIEVGLGGSLDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGII---KPGCPVV 180 (429) Q Consensus 104 FE~lt~~a~~~f~~~~~d~~vlE~GlGGr~DaTnvi~~~~vavITnI~~DHle~LG~tle~Ia~eKa~I~---k~~~~~v 180 (429) T Consensus 153 ------------~~~~~~~~V~E~d---E~d~sf~~~~P~iavitNI~~DHLD~h~-s~e~Y~~ak~~~~~~~~~~g~~V 216 (459) T PRK00421 153 ------------RLGSSDYFVAEAD---ESDRSFLKLHPDIAVVTNIDADHLDYYG-DFEDLKDAFQEFAHNLPFYGALV 216 (459) T ss_pred ------------CCCCCCEEEEEEC---CCCCCHHHCCCCEEEEECCCHHHHHHCC-CHHHHHHHHHHHHHCCCCCCCEE T ss_conf ------------2588988999953---5414364458989999179877865601-89999999999997199547211 Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCCCCC----CCCC-----CCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHH Q ss_conf 54447178988999986210566523576----3210-----12585244431033334444443222211111469999 Q gi|254780821|r 181 IGHQVYDEVREILVSKAEKMGCPYNVYGD----DFYA-----FEKNKCLVYQDKISQTNLTVLGLVGEHQYINAATAICA 251 (429) Q Consensus 181 ~~~~~~~~~~~~i~~~a~~~~~~~~~~~~----~~~~-----~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~~Aiaa 251 (429) T Consensus 217 iN~D-D~~~~~l~~----~~~~~vitfg~~~~~d~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~l~G~HNv~NalAAia~ 291 (459) T PRK00421 217 ACGD-DPELRELLP----RVDRPVITYGFSEDADFRAENIRQDGGGSHFDVLREGEDLGDFTLPLPGRHNVLNALAAIAV 291 (459) T ss_pred CCCC-CHHHHHHHH----HCCCCCEEECCCCCCCEEEEEEEEECCCEEEEEEECCCEEEEEEECCCHHHHHHHHHHHHHH T ss_conf 4687-989999877----43886002356876666788899948923899983893788999568638899999999999 Q ss_pred HHHHHHCCHHHHCCCCCCCCC-CCCCEEEEECCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCCEEEEECC Q ss_conf 875320000110011222233-6653035422875444578745999336321579988865433114777712431134 Q gi|254780821|r 252 VQMAGFTLEKECINAALQSVQ-WFGRLQKITEGPLLNKLPDHSEVWIDGGHNPNAGLVVSKEISKLKGSSNKPFYLVIGM 330 (429) Q Consensus 252 ~~~lg~~i~~~~I~~gL~~~~-~pGR~e~i~~~~~~~~~~~~~~viiD~AHNp~s~~~l~~~l~~l~~~~~~~i~~I~G~ 330 (429) T Consensus 292 a~~lGi--~~e~i~~aL~~F~Gv~~R~E~v~~-------~~gv~~idDYAH~P~~i~a~l~alr~~~--~~~rii~vfqP 360 (459) T PRK00421 292 ALELGI--DDEAIRKALATFKGVKRRFEEKGE-------VNGVVLIDDYAHHPTEIKATLKAARQKY--PDKRIVAVFQP 360 (459) T ss_pred HHHCCC--CHHHHHHHHHHCCCCCEEEEEEEE-------CCCEEEEEECCCCHHHHHHHHHHHHHHC--CCCCEEEEECC T ss_conf 998499--999999999753574502799872-------2884799735689389999999999876--89966999867 Q ss_pred ---CCCCCH-HHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCC-CCEEEECCHHHHHHHHHHHCCCCCC Q ss_conf ---679898-99999888638889998422889984212789899999998549-9789969989999999986035886 Q gi|254780821|r 331 ---VEGKKY-GRYLEAFVELSPIVLSVSLICRGRERQSISITPKVLMQEAKKLG-FQAMACSSMIEALSRVRKINEELPP 405 (429) Q Consensus 331 ---~~dKd~-~~~l~~l~~~~d~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~eAi~~a~~~~~~~~~ 405 (429) T Consensus 361 h~~sR~~~~~~e~a~~l-~~aD~vil~~iy~a~E~~-~~g~~~~~i~~~i~~~~~~~~~~~~~~~~ai~~~~~~a--~~g 436 (459) T PRK00421 361 HRYSRTRDLFDEFAEVL-SDADEVILLDIYAAGEAP-IPGVDSEDLARAIRKRGHVDVIFVPDVDDLAELLADVL--QPG 436 (459) T ss_pred CCHHHHHHHHHHHHHHH-HCCCEEEECCCCCCCCCC-CCCCCHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHC--CCC T ss_conf 42054899999999998-719999988875888876-57889999999998608988799699999999999858--998 Q ss_pred CEEEEE--CCHHHHHHHH Q ss_conf 799994--9779999999 Q gi|254780821|r 406 PLILIA--GSLYLAGEAL 421 (429) Q Consensus 406 d~VLV~--GS~ylvge~l 421 (429) T Consensus 437 DvVL~~GaGd~~~~~~~l 454 (459) T PRK00421 437 DLVLTMGAGDITKLARAL 454 (459) T ss_pred CEEEEECCCCHHHHHHHH T ss_conf 999997999989999999 |
|
>COG0769 MurE UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
---|
Probab=100.00 E-value=0 Score=314.73 Aligned_cols=353 Identities=21% Similarity=0.226 Sum_probs=239.2 Q ss_pred CCHHHHHHHHHHC-CCHHHHCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEECCCCCCCEECCH Q ss_conf 8889999999872-995883598399945898479999999999997893514137841101200898884778715588 Q gi|254780821|r 4 DSLLKMGYLLEDL-GRPQDRLPPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNERFRLGVKGGRGRLVED 82 (429) Q Consensus 4 ~~l~r~~~ll~~l-g~P~~~~~~vI~VtGTnGKttt~~~i~~il~~~g~k~g~~tSPhl~~~~Eri~i~~~~~~g~~i~~ 82 (429) T Consensus 71 ~~~~~~~~~a~~~y~~ps~~l-~vigvTGTNgKTt~t~~~~~~~~~~g~~~~~~gT-----------------~g~~~~~ 132 (475) T COG0769 71 GTNGKLTTLALAFYGLPSGKL-KVIGVTGTNGKTTTTSLLAQILKKLGKKTALIGT-----------------EGDELSP 132 (475) T ss_pred CCHHHHHHHHHHHCCCCCCCC-EEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEE-----------------EEEECCC T ss_conf 853777888998523865785-1898638785799999999998862982589997-----------------7663268 Q ss_pred HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHH----HHHHHHCCCCCCCEEEEEECCCHHCCCC Q ss_conf 999999999863047767795789999999874114462477764447----5676413567751589860250000002 Q gi|254780821|r 83 VELLDVFRRVRRVKSAQNLTIFELSIATALVLFSKYPADCAIIEVGLG----GSLDATNIIEKVAVSVITSISLDHEKIL 158 (429) Q Consensus 83 ~~~~~~~~~i~~~~~~~~~t~FE~lt~~a~~~f~~~~~d~~vlE~GlG----Gr~DaTnvi~~~~vavITnI~~DHle~L 158 (429) T Consensus 133 ~~-------~~-~~~~tTP~~~~l~~--~~~~~~d~~~e~~vmEvssh~l~~~Rv~~~----~f~v~~ftnls~DHlD~h 198 (475) T COG0769 133 GI-------LE-PTGLTTPEALDLQN--LLRDLLDRGAEIAVMEVSSHGLVQGRVEGV----TFDVGVFTNLSRDHLDYH 198 (475) T ss_pred CC-------CC-CCCCCCCCHHHHHH--HHHHHHHCCCEEEEEEECHHHHHHCCCCCC----EEEEECCCCCCHHHHHCC T ss_conf 86-------34-56678921789999--999999738809998850347975786563----598864566566665235 Q ss_pred CCCHHHHHHHHHHHCC---CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC----------CCEEEEEEC Q ss_conf 7852344566653113---798331544471789889999862105665235763210125----------852444310 Q gi|254780821|r 159 GNTVSAIAKDKSGIIK---PGCPVVIGHQVYDEVREILVSKAEKMGCPYNVYGDDFYAFEK----------NKCLVYQDK 225 (429) Q Consensus 159 G~tle~Ia~eKa~I~k---~~~~~v~~~~~~~~~~~~i~~~a~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~ 225 (429) T Consensus 199 -~t~e~Y~~aK~~lf~~~~~~~~~Vin~dd~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~- 274 (475) T COG0769 199 -GTMEYYGAAKAVLFESLPHSGEAVINPDDGHGL-D-YKERLKNALGDYITYGCDFKRPDLDYRGIEESSSGSDFVFEP- 274 (475) T ss_pred -CCHHHHHHHHHHHHHCCCCCCCEEECCCCCHHH-H-HHHHHHHCCCCEEEECCCCCCCCHHHCCCEEEECCCEEEEEC- T ss_conf -749999988987764057887479877880388-8-999998568878996889963121222611421354058863- Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHCCCCCCCCC-CCCCEEEEECCCCCCCCCCCCEEEEECCCCHH Q ss_conf 33334444443222211111469999875320000110011222233-66530354228754445787459993363215 Q gi|254780821|r 226 ISQTNLTVLGLVGEHQYINAATAICAVQMAGFTLEKECINAALQSVQ-WFGRLQKITEGPLLNKLPDHSEVWIDGGHNPN 304 (429) Q Consensus 226 ~~~~~~~~l~l~G~hn~~Na~~Aiaa~~~lg~~i~~~~I~~gL~~~~-~pGR~e~i~~~~~~~~~~~~~~viiD~AHNp~ 304 (429) T Consensus 275 ~~~~~~~~~~L~G~fNv~NaLaA~a~~~~lG~--~~e~i~~~l~~~~~v~GRmE~v~~~--------~~~v~VDyAHnPd 344 (475) T COG0769 275 SGGIGEYELPLPGLFNVYNALAAVAAALALGV--DLEDILAGLETLKPVPGRMELVNIG--------GKLVIVDYAHNPD 344 (475) T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHCCCCCCCEEEECCC--------CCEEEEEECCCHH T ss_conf 78732686041227789999999999987499--9999999997468999860687389--------9769999534869 Q ss_pred HHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHH---HHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHC-C Q ss_conf 799888654331147777124311346798989---999988863888999842288998421278989999999854-9 Q gi|254780821|r 305 AGLVVSKEISKLKGSSNKPFYLVIGMVEGKKYG---RYLEAFVELSPIVLSVSLICRGRERQSISITPKVLMQEAKKL-G 380 (429) Q Consensus 305 s~~~l~~~l~~l~~~~~~~i~~I~G~~~dKd~~---~~l~~l~~~~d~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~ 380 (429) T Consensus 345 ~le~~L~~~~~~---~~g~li~VfG~gGDrD~~kr~~mg~ia~~~ad~vivt~dnpR-------~edp~~i~~~i~~g~~ 414 (475) T COG0769 345 GLEKALRAVRLH---AAGRLIVVFGCGGDRDKSKRPDMGAIAEQLADIVIVTSDNPR-------SEDPAVILADILAGIE 414 (475) T ss_pred HHHHHHHHHHHH---CCCCEEEEECCCCCCCCCCCHHHHHHHHHCCCCEEECCCCCC-------CCCHHHHHHHHHHCCC T ss_conf 999999998753---498489997766887534303159999855993699189988-------7688999999983647 Q ss_pred C--CEEEECCHHHHHHHHHHHCCCCCCCEEEEECCH Q ss_conf 9--789969989999999986035886799994977 Q gi|254780821|r 381 F--QAMACSSMIEALSRVRKINEELPPPLILIAGSL 414 (429) Q Consensus 381 ~--~~~~~~~~~eAi~~a~~~~~~~~~d~VLV~GS~ 414 (429) T Consensus 415 ~~~~~~~~~dr~~AI~~ai~~a~--~~D~vliagkG 448 (475) T COG0769 415 APEKYEIIEDREEAIRKALDLAK--EGDVVLIAGKG 448 (475) T ss_pred CCCCEEECHHHHHHHHHHHHHHC--CCCEEEEEEEC T ss_conf 66414301109999999998632--48878996423 |
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>TIGR02068 cya_phycin_syn cyanophycin synthetase; InterPro: IPR011810 Cyanophycin is an insoluble storage polymer for carbon, nitrogen, and energy, found in most Cyanobacteria | Back alignment and domain information |
---|
Probab=100.00 E-value=0 Score=314.74 Aligned_cols=348 Identities=22% Similarity=0.235 Sum_probs=240.8 Q ss_pred HHHHHHC---CCHHHHCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEECCCCCCCEECCHHHHH Q ss_conf 9999872---9958835983999458984799999999999978935141378411012008988847787155889999 Q gi|254780821|r 10 GYLLEDL---GRPQDRLPPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNERFRLGVKGGRGRLVEDVELL 86 (429) Q Consensus 10 ~~ll~~l---g~P~~~~~~vI~VtGTnGKttt~~~i~~il~~~g~k~g~~tSPhl~~~~Eri~i~~~~~~g~~i~~~~~~ 86 (429) T Consensus 473 ~Ai~d~LFP~~~~-grI-PiV~vTGTNGKTt~~RL~Ahil~~~G~~vG~T~t------------D-----G~Yi~~~~-- 531 (876) T TIGR02068 473 KAIVDMLFPEEDD-GRI-PIVAVTGTNGKTTTTRLVAHILKQTGKVVGMTTT------------D-----GVYIGKKL-- 531 (876) T ss_pred HHHHHHCCCCCCC-CCE-EEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEEC------------C-----CEEECCEE-- T ss_conf 2687522888789-834-4888726898355788999999856982764203------------7-----67755766-- Q ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECC-CHHCCCCC-CCHHH Q ss_conf 99999863047767795789999999874114462477764447567641356775158986025-00000027-85234 Q gi|254780821|r 87 DVFRRVRRVKSAQNLTIFELSIATALVLFSKYPADCAIIEVGLGGSLDATNIIEKVAVSVITSIS-LDHEKILG-NTVSA 164 (429) Q Consensus 87 ~~~~~i~~~~~~~~~t~FE~lt~~a~~~f~~~~~d~~vlE~GlGGr~DaTnvi~~~~vavITnI~-~DHle~LG-~tle~ 164 (429) T Consensus 532 -----v~---~GDntGP~-----SAr~~L~d~~VdaAVLEtarGGiLR~GLafD~c~VGvVtNi~~~DHLG~~dInt~e~ 598 (876) T TIGR02068 532 -----VE---KGDNTGPK-----SARRILADPTVDAAVLETARGGILREGLAFDRCDVGVVTNIADGDHLGLGDINTIED 598 (876) T ss_pred -----EE---CCCCCCHH-----HHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCHHHHH T ss_conf -----62---47898715-----730122788801899862787220665010321416898337766357886004788 Q ss_pred HHHHHHHH---CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCC------CCCCCEEEEEECC--------- Q ss_conf 45666531---13798331544471789889999862105665235763210------1258524443103--------- Q gi|254780821|r 165 IAKDKSGI---IKPGCPVVIGHQVYDEVREILVSKAEKMGCPYNVYGDDFYA------FEKNKCLVYQDKI--------- 226 (429) Q Consensus 165 Ia~eKa~I---~k~~~~~v~~~~~~~~~~~~i~~~a~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~--------- 226 (429) T Consensus 599 La~Vk~vv~e~V~pDG~AVLNA~D-P~v----a~mA~~~~G~i~YF~~~~~~~~~~~H~~~G~~avy~~~G~ivia~G~~ 673 (876) T TIGR02068 599 LADVKRVVVEVVKPDGYAVLNADD-PMV----AAMAEKCKGKIAYFSMDPNNPTVAKHIAKGGRAVYYENGYIVIAKGGA 673 (876) T ss_pred HHHHEEEEEEEECCCCCEEECCCC-CHH----HHHHHHCCCCEEEEECCCCHHHHHHHHHCCCEEEEEECCEEEEEECCC T ss_conf 875101267888589827864788-557----999842896189862186258999998559899998678799974783 Q ss_pred ----CCCCCCCCCCCC--CCCCCCHHHHHHHHHHHHHCCHHHHCCCCCCCCC-----CCCCEEEEECCCCCCCCCCCCEE Q ss_conf ----333444444322--2211111469999875320000110011222233-----66530354228754445787459 Q gi|254780821|r 227 ----SQTNLTVLGLVG--EHQYINAATAICAVQMAGFTLEKECINAALQSVQ-----WFGRLQKITEGPLLNKLPDHSEV 295 (429) Q Consensus 227 ----~~~~~~~l~l~G--~hn~~Na~~Aiaa~~~lg~~i~~~~I~~gL~~~~-----~pGR~e~i~~~~~~~~~~~~~~v 295 (429) T Consensus 674 ~~~~~~~~~iPlT~GG~~~F~ieN~LAA~aAA~~~~v~i--e~Ir~G~~tF~~d~~~~PGrfnLFn~--------~~~~~ 743 (876) T TIGR02068 674 EVAIARIAEIPLTMGGRVAFQIENALAAVAAAWALGVDI--ELIRAGIRTFKADAAQAPGRFNLFNL--------GGAHV 743 (876) T ss_pred CHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCH--HHHHHHHHHCCCHHHCCCCEEEEEEC--------CCCEE T ss_conf 226789972886757715788889999999985348989--99998987330101068950322225--------88289 Q ss_pred EEECCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHH---HHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHH Q ss_conf 993363215799888654331147777124311346798989---99998886388899984228899842127898999 Q gi|254780821|r 296 WIDGGHNPNAGLVVSKEISKLKGSSNKPFYLVIGMVEGKKYG---RYLEAFVELSPIVLSVSLICRGRERQSISITPKVL 372 (429) Q Consensus 296 iiD~AHNp~s~~~l~~~l~~l~~~~~~~i~~I~G~~~dKd~~---~~l~~l~~~~d~i~~~~~~~~~~~~~~~~~~~~~l 372 (429) T Consensus 744 lvDY~HNp~~~~av~~a~~~~~A---~rr~gV~ggpGDR~De~l~~~G~~~g~~FD~i~~keD~~~r-GkR~~G~a~~Ll 819 (876) T TIGR02068 744 LVDYGHNPAAIEAVVEAIRNLPA---RRRIGVIGGPGDRRDEDLVKLGEILGGAFDQIILKEDDDLR-GKRARGEAAALL 819 (876) T ss_pred EEECCCCHHHHHHHHHHHHHCCC---CCEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCC-CCCCCCHHHHHH T ss_conf 99657797899999999961787---84789980787786588999999975406879996274535-788873589999 Q ss_pred HHHHHHCCCCEE---EECCHHHHHHHHHHHCCCCCCCEEEEEC Q ss_conf 999985499789---9699899999999860358867999949 Q gi|254780821|r 373 MQEAKKLGFQAM---ACSSMIEALSRVRKINEELPPPLILIAG 412 (429) Q Consensus 373 ~~~~~~~~~~~~---~~~~~~eAi~~a~~~~~~~~~d~VLV~G 412 (429) T Consensus 820 ~~G~~~~~~~~~~i~~i~de~~Ai~~~L~~~--~~GdL~vi~~ 860 (876) T TIGR02068 820 RQGLIQAAMRKAAIEEILDETEAIKAALDSL--EAGDLVVILP 860 (876) T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHC--CCCCEEEEEC T ss_conf 9635305776567999988999999998421--4688699970 |
The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine. The polymer is made by this enzyme, cyanophycin synthetase, and degraded by cyanophycinase. Heterologously expressed cyanophycin synthetase in Escherichia coli produces a closely related, water-soluble polymer with some Arg replaced by Lys. It is unclear whether enzymes that produce soluble cyanophycin-like polymers in vivo in non-Cyanobacterial species should be designated as cyanophycin synthetase itself or as a related enzyme. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions .; GO: 0005524 ATP binding, 0016874 ligase activity, 0009059 macromolecule biosynthetic process. |
>PRK10773 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; Reviewed | Back alignment and domain information |
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Probab=100.00 E-value=2.8e-45 Score=299.16 Aligned_cols=344 Identities=20% Similarity=0.216 Sum_probs=218.9 Q ss_pred CCCHHHHHHHHHHCCCHHHHCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEECCCCCCCEECCH Q ss_conf 78889999999872995883598399945898479999999999997893514137841101200898884778715588 Q gi|254780821|r 3 ADSLLKMGYLLEDLGRPQDRLPPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNERFRLGVKGGRGRLVED 82 (429) Q Consensus 3 ~~~l~r~~~ll~~lg~P~~~~~~vI~VtGTnGKttt~~~i~~il~~~g~k~g~~tSPhl~~~~Eri~i~~~~~~g~~i~~ 82 (429) T Consensus 81 ~d~~~al~~la~~~-~~~~~~-~vIgITGSnGKTTtk~~i~~iL~~~g~~~~t~gn-----------~n~~--iG~p~-- 143 (452) T PRK10773 81 KDTRLAFGQLAAWV-RQQVPA-RVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGN-----------LNND--IGVPL-- 143 (452) T ss_pred CCHHHHHHHHHHHH-HHCCCC-CEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCC-----------CCCC--CCCCH-- T ss_conf 99999999999987-515997-5899991699625999999999972884124565-----------2688--78660-- Q ss_pred HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHH--HHHHHHCCCCCCCEEEEEECCCHHCCCCCC Q ss_conf 999999999863047767795789999999874114462477764447--567641356775158986025000000278 Q gi|254780821|r 83 VELLDVFRRVRRVKSAQNLTIFELSIATALVLFSKYPADCAIIEVGLG--GSLDATNIIEKVAVSVITSISLDHEKILGN 160 (429) Q Consensus 83 ~~~~~~~~~i~~~~~~~~~t~FE~lt~~a~~~f~~~~~d~~vlE~GlG--Gr~DaTnvi~~~~vavITnI~~DHle~LG~ 160 (429) T Consensus 144 -------------------tl~~----------~~~~~~~~v~E~g~~~~gei~~~~~~~~pdiaviTNI~~dHLd~~g- 193 (452) T PRK10773 144 -------------------TLLR----------LTPEYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFG- 193 (452) T ss_pred -------------------HHHC----------CCCHHHHHHHHHCCCCCCHHHHHHCCCCCCEEEEEECCHHHHHCCC- T ss_conf -------------------7650----------7921335785323798535676640026675999842477654057- Q ss_pred CHHHHHHHHHHHCC---CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCC---CCCCC-----CCCCCCEEEEEECCCCC Q ss_conf 52344566653113---798331544471789889999862105665235---76321-----01258524443103333 Q gi|254780821|r 161 TVSAIAKDKSGIIK---PGCPVVIGHQVYDEVREILVSKAEKMGCPYNVY---GDDFY-----AFEKNKCLVYQDKISQT 229 (429) Q Consensus 161 tle~Ia~eKa~I~k---~~~~~v~~~~~~~~~~~~i~~~a~~~~~~~~~~---~~~~~-----~~~~~~~~~~~~~~~~~ 229 (429) T Consensus 194 s~e~~~~aK~~Lf~~l~~~g~~IlN~Dd-~~~~~-~~~~~~~~~v~~~~~~~~~~d~~~~~i~~~~~g~~f~l~~~~~~- 270 (452) T PRK10773 194 SLAGVAKAKGEIFTGLPENGIAIMNADN-NDWLN-WQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLHTPTGS- 270 (452) T ss_pred CHHHHHHHHHHHHHCCCCCCEEEEECCC-HHHHH-HHHHHCCCEEEEECCCCCCCCEEEEEEEEECCCCEEEEEECCCE- T ss_conf 6999999999998178879899997987-67999-99983798289980687776189999999189418999967951- Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHCCCCCCCCC-CCCCEEEEECCCCCCCCCCCCEEEEE-CCCCHHHHH Q ss_conf 4444443222211111469999875320000110011222233-66530354228754445787459993-363215799 Q gi|254780821|r 230 NLTVLGLVGEHQYINAATAICAVQMAGFTLEKECINAALQSVQ-WFGRLQKITEGPLLNKLPDHSEVWID-GGHNPNAGL 307 (429) Q Consensus 230 ~~~~l~l~G~hn~~Na~~Aiaa~~~lg~~i~~~~I~~gL~~~~-~pGR~e~i~~~~~~~~~~~~~~viiD-~AHNp~s~~ 307 (429) T Consensus 271 ~~v~l~l~G~hnv~NalaAiava~~lG~~~--~~i~~~L~~~~~v~GRme~i~~~-------~g~~iIdDsYNAnP~Sm~ 341 (452) T PRK10773 271 VDVLLPLPGRHNIANALAAAALAMSVGATL--DAVKAGLANLKAVPGRLFPIQLA-------ENQLLLDDSYNANVGSMT 341 (452) T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHCCCCH--HHHHHHHHHCCCCCCCEEEEECC-------CEEEEEEECCCCCHHHHH T ss_conf 899970761768998999999999859999--99999997289986740799738-------708999742569979999 Q ss_pred HHHHHHHHHCCCCCCCEEEEECCCCC--CC----HHHHHHHHHHH-CCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCC Q ss_conf 88865433114777712431134679--89----89999988863-8889998422889984212789899999998549 Q gi|254780821|r 308 VVSKEISKLKGSSNKPFYLVIGMVEG--KK----YGRYLEAFVEL-SPIVLSVSLICRGRERQSISITPKVLMQEAKKLG 380 (429) Q Consensus 308 ~l~~~l~~l~~~~~~~i~~I~G~~~d--Kd----~~~~l~~l~~~-~d~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 380 (429) T Consensus 342 aal~~l~~~~---~-~ki~VLGdM~ELG~~s~~~H~~v~~~~~~~~id~v~~vG------------~~~~~~~~----~~ 401 (452) T PRK10773 342 AAVQVLAEMP---G-YRVLVVGDMAELGAESEACHRQVGEAAKAAGIDRVLSVG------------KLSQAIST----AS 401 (452) T ss_pred HHHHHHHHCC---C-CEEEEECCHHHCCCHHHHHHHHHHHHHHHCCCCEEEEEC------------HHHHHHHH----HC T ss_conf 9999997577---9-769998773772857899999999999976999999988------------78999987----41 Q ss_pred CCEEEECCHHHHHHHHHHHCCCCCCCEEEEECC----HHHHHHHHHHCC Q ss_conf 978996998999999998603588679999497----799999999879 Q gi|254780821|r 381 FQAMACSSMIEALSRVRKINEELPPPLILIAGS----LYLAGEALRENG 425 (429) Q Consensus 381 ~~~~~~~~~~eAi~~a~~~~~~~~~d~VLV~GS----~ylvge~l~~~g 425 (429) T Consensus 402 ~~~~~f~~~~~~~~~l~~~l~~~~~~~vLvKGSr~~~le~iv~~L~~~~ 450 (452) T PRK10773 402 GVGEHFADKTALIARLKALLAEQQVITILVKGSRSAAMEEVVRALQEKG 450 (452) T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHC T ss_conf 8763369999999999988744998489998575114999999999625 |
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>PRK11929 putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase; Provisional | Back alignment and domain information |
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Probab=100.00 E-value=2.7e-44 Score=292.87 Aligned_cols=345 Identities=22% Similarity=0.239 Sum_probs=221.4 Q ss_pred CCCHHHHHHHHHHCCCHHHHCCCEEEEECCCCHHHHHHHHHHHHHHCC---CCEEEEECCCCCEEEEEEEECCCCCCCEE Q ss_conf 788899999998729958835983999458984799999999999978---93514137841101200898884778715 Q gi|254780821|r 3 ADSLLKMGYLLEDLGRPQDRLPPVIHIGGTNGKGSVASFSQRLLETSG---LSVHVHTSPHLIRWNERFRLGVKGGRGRL 79 (429) Q Consensus 3 ~~~l~r~~~ll~~lg~P~~~~~~vI~VtGTnGKttt~~~i~~il~~~g---~k~g~~tSPhl~~~~Eri~i~~~~~~g~~ 79 (429) T Consensus 572 ~Dt~~AL~~lA~~~r-~~~~~-~vIgITGSnGKTTTKeml~~iLs~~~~~~~~v--~~t~g--N~NN------------~ 633 (953) T PRK11929 572 GDTLAALGRMATAWR-SSFSL-PVIAITGSNGKTTTKEMIAAILAQWQGDDGRV--TATEG--NFNN------------E 633 (953) T ss_pred CCHHHHHHHHHHHHH-HHCCC-CEEEEECCCCHHHHHHHHHHHHHHCCCCCCEE--EECCC--CCCC------------C T ss_conf 898999999999999-75799-78999678850789999999998517778438--85567--4378------------6 Q ss_pred CCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHH--HHHHHHCCCCCCCEEEEEECCCHHCCC Q ss_conf 588999999999863047767795789999999874114462477764447--567641356775158986025000000 Q gi|254780821|r 80 VEDVELLDVFRRVRRVKSAQNLTIFELSIATALVLFSKYPADCAIIEVGLG--GSLDATNIIEKVAVSVITSISLDHEKI 157 (429) Q Consensus 80 i~~~~~~~~~~~i~~~~~~~~~t~FE~lt~~a~~~f~~~~~d~~vlE~GlG--Gr~DaTnvi~~~~vavITnI~~DHle~ 157 (429) T Consensus 634 i-----------------GvPltll~----------l~~~~~~aVlEmGms~~GEI~~L~~i~~PdiaVITNIg~aHLe~ 686 (953) T PRK11929 634 I-----------------GVPLTLLR----------LRARHRAAVFELGMNHPGEIARLAAIAAPTVALVTNAQREHQEF 686 (953) T ss_pred C-----------------CCCHHHHC----------CCCCCHHHHHHHCCCCCCHHHHHHCCCCCCEEEEECCHHHHHHH T ss_conf 6-----------------67178757----------99634657876528962269986062589778874456998766 Q ss_pred CCCCHHHHHHHHHHHC---CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCC----CCCCC----CCCCEEEEEECC Q ss_conf 2785234456665311---379833154447178988999986210566523576----32101----258524443103 Q gi|254780821|r 158 LGNTVSAIAKDKSGII---KPGCPVVIGHQVYDEVREILVSKAEKMGCPYNVYGD----DFYAF----EKNKCLVYQDKI 226 (429) Q Consensus 158 LG~tle~Ia~eKa~I~---k~~~~~v~~~~~~~~~~~~i~~~a~~~~~~~~~~~~----~~~~~----~~~~~~~~~~~~ 226 (429) T Consensus 687 fg-s~e~Ia~aK~eIf~~l~~~g~aIlN~D-D~~~-~~~~~~~~~~~i~~fg~~~~~~adi~~~~i~~~~~g~~~~~~~~ 763 (953) T PRK11929 687 LH-SVEAVARANGALINALPEDGIAVVNGD-DPYA-AIWAKLAGARRVLRFGLSLQPGLDVYAEDIVTQAAGTLCFVVTP 763 (953) T ss_pred HC-CHHHHHHHHHHHHHCCCCCCEEEEECC-CHHH-HHHHHHHCCCCEEEEEECCCCCCCEEEEEEEECCCCEEEEEEEC T ss_conf 18-999999999999831587979999388-6889-99999845787599985258987689999898689649999978 Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHCCCCCCCCC-CCCCEEEEECCCCCCCCCCCCEEEEECCC--CH Q ss_conf 3334444443222211111469999875320000110011222233-66530354228754445787459993363--21 Q gi|254780821|r 227 SQTNLTVLGLVGEHQYINAATAICAVQMAGFTLEKECINAALQSVQ-WFGRLQKITEGPLLNKLPDHSEVWIDGGH--NP 303 (429) Q Consensus 227 ~~~~~~~l~l~G~hn~~Na~~Aiaa~~~lg~~i~~~~I~~gL~~~~-~pGR~e~i~~~~~~~~~~~~~~viiD~AH--Np 303 (429) T Consensus 764 ~~~~~v~l~l~G~hnv~NaLaAiAva~~lGi~~--~~i~~~L~~~~~~~gR~e~~~~~-------~g-~~iIDDsYNANP 833 (953) T PRK11929 764 AGSAYVDLPVPGEHNLRNALAAIAIGLAAGAPL--HQIIAALEGFQAVKGRMQRRQLS-------DG-TVIIDDTYNANP 833 (953) T ss_pred CCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCH--HHHHHHHHCCCCCCCCCEEEEEC-------CC-EEEEEECCCCCH T ss_conf 956999956897999999999999999939999--99999986699999987899957-------99-799997848889 Q ss_pred HHHHHHHHHHHHHCCCCCCCEEEEECCCCC------CCHHHHHHHHHHH-CCEEEEEEECCCCCCCCCCCCCHHHHHHHH Q ss_conf 579988865433114777712431134679------8989999988863-888999842288998421278989999999 Q gi|254780821|r 304 NAGLVVSKEISKLKGSSNKPFYLVIGMVEG------KKYGRYLEAFVEL-SPIVLSVSLICRGRERQSISITPKVLMQEA 376 (429) Q Consensus 304 ~s~~~l~~~l~~l~~~~~~~i~~I~G~~~d------Kd~~~~l~~l~~~-~d~i~~~~~~~~~~~~~~~~~~~~~l~~~~ 376 (429) T Consensus 834 ~Sm~aAl~~L~~~~---~~~kiaVLGdM~ELG~~s~~~H~~ig~~~~~~~id~v~~vG------------~~~~~~~~~~ 898 (953) T PRK11929 834 DSMRAAIDVLARLP---GPKRALVLGDMLELGDNGPAMHREVGDYAREHSIDALITLG------------EASRDAAHAF 898 (953) T ss_pred HHHHHHHHHHHCCC---CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEC------------HHHHHHHHHC T ss_conf 99999999985287---99869998485002457899999999999975999999986------------5799998656 Q ss_pred HHCCCCEEEECCHHHHHHHHHHHCCCCCCCEEEEECCH----HHHHHHHHHC Q ss_conf 85499789969989999999986035886799994977----9999999987 Q gi|254780821|r 377 KKLGFQAMACSSMIEALSRVRKINEELPPPLILIAGSL----YLAGEALREN 424 (429) Q Consensus 377 ~~~~~~~~~~~~~~eAi~~a~~~~~~~~~d~VLV~GS~----ylvge~l~~~ 424 (429) T Consensus 899 ~~--~~~~~~~~~~~l~~~L~~~l--~~~d~VLVKGSR~m~lE~iV~~l~~~ 946 (953) T PRK11929 899 GK--AARACFASVDEIIAALRGLL--PSSDIVLIKGSRFMRLERVVTAFSTN 946 (953) T ss_pred CC--CCEEEECCHHHHHHHHHHHC--CCCCEEEEECCCCCCHHHHHHHHHCC T ss_conf 84--65788399999999998558--99999999715604699999999729 |
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>TIGR01143 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; InterPro: IPR005863 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment | Back alignment and domain information |
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Probab=100.00 E-value=1.6e-43 Score=288.02 Aligned_cols=349 Identities=21% Similarity=0.218 Sum_probs=228.4 Q ss_pred CCC-HHHHHHHHHHCCCHHHHCC-C--EEEEECCCCHHHHHHHHHHHHHHCCCC-EEEEECCCCCEEEEEEEECCCCCCC Q ss_conf 788-8999999987299588359-8--399945898479999999999997893-5141378411012008988847787 Q gi|254780821|r 3 ADS-LLKMGYLLEDLGRPQDRLP-P--VIHIGGTNGKGSVASFSQRLLETSGLS-VHVHTSPHLIRWNERFRLGVKGGRG 77 (429) Q Consensus 3 ~~~-l~r~~~ll~~lg~P~~~~~-~--vI~VtGTnGKttt~~~i~~il~~~g~k-~g~~tSPhl~~~~Eri~i~~~~~~g 77 (429) T Consensus 62 ~DtV~~AL~~lA~~~~~---~~~~~~~~igiTGS~GKTTtKEm~~~iL~~~~~~~~aV~~t~-----------------G 121 (462) T TIGR01143 62 DDTVLAALQALASAKRE---KFSAKRRVIGITGSSGKTTTKEMLAAILSHKYKDSEAVLATP-----------------G 121 (462) T ss_pred ECHHHHHHHHHHHHHHH---HCCCCEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCEEECC-----------------C T ss_conf 06589999999999997---439975899985689606799999999985359753236248-----------------8 Q ss_pred EECCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHH--HHHHHHCCCCCCCEEEEEECCCHHC Q ss_conf 15588999999999863047767795789999999874114462477764447--5676413567751589860250000 Q gi|254780821|r 78 RLVEDVELLDVFRRVRRVKSAQNLTIFELSIATALVLFSKYPADCAIIEVGLG--GSLDATNIIEKVAVSVITSISLDHE 155 (429) Q Consensus 78 ~~i~~~~~~~~~~~i~~~~~~~~~t~FE~lt~~a~~~f~~~~~d~~vlE~GlG--Gr~DaTnvi~~~~vavITnI~~DHl 155 (429) T Consensus 122 N~Nn~i--------------GlPltl----------L~~~~~~~~aV~EmG~s~~GEI~~L~~i~~P~ia~itNi~~AHl 177 (462) T TIGR01143 122 NFNNEI--------------GLPLTL----------LRATEDHDYAVLEMGASHPGEIAYLAEIAKPDIALITNIGEAHL 177 (462) T ss_pred CCCCCH--------------HHHHHH----------HCCCCCCCEEEEEECCCCCCCHHHHHHHHCCCEEEEECCHHHHH T ss_conf 767613--------------567887----------50788880599984389887378999861998699917047876 Q ss_pred CC---CCCCHHHHHHHHHHHCC---CCCCCCCCCCCCHHHHHHHHHHHHHCCCC-CCCCCCCC-----CC-----CCCCC Q ss_conf 00---27852344566653113---79833154447178988999986210566-52357632-----10-----12585 Q gi|254780821|r 156 KI---LGNTVSAIAKDKSGIIK---PGCPVVIGHQVYDEVREILVSKAEKMGCP-YNVYGDDF-----YA-----FEKNK 218 (429) Q Consensus 156 e~---LG~tle~Ia~eKa~I~k---~~~~~v~~~~~~~~~~~~i~~~a~~~~~~-~~~~~~~~-----~~-----~~~~~ 218 (429) T Consensus 178 ~~F~~Fg-s~~~Ia~aK~EI~~~~~~~~~a~~n~d~-~-~~~~~~~~~~~~~~~~~~~Fg~~~~~~d~~~~~~~~~~~g~ 254 (462) T TIGR01143 178 EGFGDFG-SLEGIAEAKGEILQGLKENGIAVINADD-P-ALAKFKKRLKILNKAKVLSFGLEGKYADVSAEDVSLSELGT 254 (462) T ss_pred HCCCCCC-HHHHHHHHHHHHHHCCCCCCEEEECCCC-H-HHHHHHHHCCCCCCCCEEEECCCCCCCCEEEECCEECCCCC T ss_conf 1157875-3899999999997078977589853525-6-88999984111578647881477763436884321215333 Q ss_pred EEEEEECCCCCCCCCCC-CCCCC-CCCCHHHHHHHHHHHHHCCHHHHCCCCCCCCC-CCCCEEEEECCCCCCCCCCCCEE Q ss_conf 24443103333444444-32222-11111469999875320000110011222233-66530354228754445787459 Q gi|254780821|r 219 CLVYQDKISQTNLTVLG-LVGEH-QYINAATAICAVQMAGFTLEKECINAALQSVQ-WFGRLQKITEGPLLNKLPDHSEV 295 (429) Q Consensus 219 ~~~~~~~~~~~~~~~l~-l~G~h-n~~Na~~Aiaa~~~lg~~i~~~~I~~gL~~~~-~pGR~e~i~~~~~~~~~~~~~~v 295 (429) T Consensus 255 ~f~~~~~~~~~-~v~LP~~~G~h~n~~NalaA~Ala~~lG~~~--~~~~~gL~~~~~~~gR~~~~~~~-------~g~-~ 323 (462) T TIGR01143 255 GFTLVTPGGEI-EVELPILLGRHPNVENALAAAALALALGLPL--EEIAEGLSELKPVKGRLEVIQTK-------KGL-T 323 (462) T ss_pred EEEEEECCCEE-EEEECCCCCCHHHHHHHHHHHHHHHHHCCCH--HHHHHHHHHCCCCCCCEEEEEEC-------CCE-E T ss_conf 58998637089-9983112088188999999999999809888--89998976427887650789864-------874-8 Q ss_pred EEECCC--CHHHHHHHHHHHHHHCCCC-CCCEEEEECCCCC--C----CHHHHHHHHHHHC-CEEEEEEECCCCCCCCCC Q ss_conf 993363--2157998886543311477-7712431134679--8----9899999888638-889998422889984212 Q gi|254780821|r 296 WIDGGH--NPNAGLVVSKEISKLKGSS-NKPFYLVIGMVEG--K----KYGRYLEAFVELS-PIVLSVSLICRGRERQSI 365 (429) Q Consensus 296 iiD~AH--Np~s~~~l~~~l~~l~~~~-~~~i~~I~G~~~d--K----d~~~~l~~l~~~~-d~i~~~~~~~~~~~~~~~ 365 (429) T Consensus 324 ~IdD~YNAnp~Sm~AAl~~L~~~~~~~E~g~~~~VLG~M~ELG~~s~~~H~~vg~~a~~~~~~~~~~~G~------~~~~ 397 (462) T TIGR01143 324 LIDDTYNANPDSMRAALDALARFPGKGEVGKKILVLGDMLELGELSEELHAEVGRYAAALGIDLVFLVGE------EASP 397 (462) T ss_pred EEECCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECC------CCCC T ss_conf 9844135988999999999613888886354689983845311799999999999998628738998477------3350 Q ss_pred CCCHHHHHHHHHHC----CCCEEEECCHHHHHHHHHHH--CCCCCCCEEEEECCHHH Q ss_conf 78989999999854----99789969989999999986--03588679999497799 Q gi|254780821|r 366 SITPKVLMQEAKKL----GFQAMACSSMIEALSRVRKI--NEELPPPLILIAGSLYL 416 (429) Q Consensus 366 ~~~~~~l~~~~~~~----~~~~~~~~~~~eAi~~a~~~--~~~~~~d~VLV~GS~yl 416 (429) T Consensus 398 -~~~~~~~~~~~~~e~~~~~~~~~f~~~~~l~~~L~~~~~~~~~~~~~vLvKGSR~~ 453 (462) T TIGR01143 398 -NTVAVIADSLGSGEKLVKKQGKHFADKDELLAFLKDLNELQVGEGDVVLVKGSRSV 453 (462) T ss_pred -HHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHHHCCCCCCCEEEEECCCHH T ss_conf -26999999855896504688875179889999987533112578608999536423 |
The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) , MurD (6.3.2.9 from EC) , MurE (6.3.2.13 from EC) and MurF (6.3.2.10 from EC) . These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales . This entry represents UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF, 6.3.2.15 from EC), which is required to catalyze the final step in the synthesis of the cytoplasmic precursor of the bacterial cell wall peptidoglycan. |
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
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Probab=100.00 E-value=9.8e-43 Score=283.20 Aligned_cols=308 Identities=21% Similarity=0.250 Sum_probs=207.1 Q ss_pred CEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEECCCCCCCEECCHHHHHHHHHHHHHCCCCCCCCHH Q ss_conf 83999458984799999999999978935141378411012008988847787155889999999998630477677957 Q gi|254780821|r 25 PVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNERFRLGVKGGRGRLVEDVELLDVFRRVRRVKSAQNLTIF 104 (429) Q Consensus 25 ~vI~VtGTnGKttt~~~i~~il~~~g~k~g~~tSPhl~~~~Eri~i~~~~~~g~~i~~~~~~~~~~~i~~~~~~~~~t~F 104 (429) T Consensus 110 ~~IaVTGTnGKTTTt~ll~~iL~~~g~~~~~--------------~GN---IG~p~~~~~l~--------~~-------- 156 (459) T PRK02705 110 PWVGITGTNGKTTVTHLLAHILQAAGLNAPM--------------CGN---IGYAACELALL--------RS-------- 156 (459) T ss_pred CEEEEECCCCCHHHHHHHHHHHHHCCCCCEE--------------ECC---CCCCHHHHHHH--------CC-------- T ss_conf 7577717897278999999999983998536--------------401---37620444421--------34-------- Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCC Q ss_conf 89999999874114462477764447567641356775158986025000000278523445666531137983315444 Q gi|254780821|r 105 ELSIATALVLFSKYPADCAIIEVGLGGSLDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGIIKPGCPVVIGHQ 184 (429) Q Consensus 105 E~lt~~a~~~f~~~~~d~~vlE~GlGGr~DaTnvi~~~~vavITnI~~DHle~LG~tle~Ia~eKa~I~k~~~~~v~~~~ 184 (429) T Consensus 157 ----------~~~~~~d~~VlE~SSf-QLe~~~~~-~p~iavitNI~~DHLD~h~-s~e~Y~~aK~~i~~~~~~~V~N~D 223 (459) T PRK02705 157 ----------GKAEKPDWIVAELSSY-QIESSPEL-APKIGIWTTFTPDHLERHG-TLENYFAIKASLLERSEIRILNGD 223 (459) T ss_pred ----------CCCCCCCEEEEECCHH-HHCCCCCC-CCCEEEEECCCHHHHHHHH-HHHHHHHHHHHHHCCCCEEEEECC T ss_conf ----------6788765799975713-31336677-8778999668877876642-177899999975065988999388 Q ss_pred CCHHHHHHHHHHHHHCCCCCCCCCCCCC------CCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC Q ss_conf 7178988999986210566523576321------0125852444310333344444432222111114699998753200 Q gi|254780821|r 185 VYDEVREILVSKAEKMGCPYNVYGDDFY------AFEKNKCLVYQDKISQTNLTVLGLVGEHQYINAATAICAVQMAGFT 258 (429) Q Consensus 185 ~~~~~~~~i~~~a~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~~Aiaa~~~lg~~ 258 (429) T Consensus 224 -D~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~l~l~G~HN~~NalAAia~a~~lG-- 297 (459) T PRK02705 224 -DPYLRQGRSSWPKGYW--VSTQGKKSLLDQADFWIDQEG-WVVERGEPLFPLEALKMPGAHNLQNLLLAVAAARLAG-- 297 (459) T ss_pred -CHHHHHHHHHCCCCEE--EECCCCCCCCCCCCEEECCCC-EEEECCEEEEEHHHCCCCCHHHHHHHHHHHHHHHHHC-- T ss_conf -7999998764377479--965564112111444882698-7997780565404216876768999999999999858-- Q ss_pred CHHHHCCCCCCCCC-CCCCEEEEECCCCCCCCCCCCEEEEEC-CCCHHHHHHHHHHHHHHCCCCCCCEEEEECC-CCCCC Q ss_conf 00110011222233-665303542287544457874599933-6321579988865433114777712431134-67989 Q gi|254780821|r 259 LEKECINAALQSVQ-WFGRLQKITEGPLLNKLPDHSEVWIDG-GHNPNAGLVVSKEISKLKGSSNKPFYLVIGM-VEGKK 335 (429) Q Consensus 259 i~~~~I~~gL~~~~-~pGR~e~i~~~~~~~~~~~~~~viiD~-AHNp~s~~~l~~~l~~l~~~~~~~i~~I~G~-~~dKd 335 (429) T Consensus 298 i~~e~I~~aL~~F~GlpHRlE~V~~-------~~gV~fiNDSKaTN~~a~~~Al~~~~-------~~iilI~GG~~K~~d 363 (459) T PRK02705 298 LSAEAIAKALRSFPGVPHRLERIGT-------INGIDFINDSKATNYDAAEVGLKAVP-------GPIILIAGGEAKQGD 363 (459) T ss_pred CCHHHHHHHHHHCCCCCCCEEEEEE-------CCCEEEECCCCCCCHHHHHHHHHHCC-------CCEEEEECCCCCCCC T ss_conf 8636678887508999985389874-------28878972787889899999998289-------986999567666787 Q ss_pred HHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCC--CEEEECCHHHHHHHHHHHCCCCCCCEEEE Q ss_conf 8999998886388899984228899842127898999999985499--78996998999999998603588679999 Q gi|254780821|r 336 YGRYLEAFVELSPIVLSVSLICRGRERQSISITPKVLMQEAKKLGF--QAMACSSMIEALSRVRKINEELPPPLILI 410 (429) Q Consensus 336 ~~~~l~~l~~~~d~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~eAi~~a~~~~~~~~~d~VLV 410 (429) T Consensus 364 ~~~l~~~~~~~v~~v~~~------------G~~~~~i~~~l~~~~~~~~~~~~~~l~~Av~~a~~~a~~~~~~~VLl 428 (459) T PRK02705 364 DSAWLKQIKAKAAAVLLF------------GEAAPELAQLLQESGYTGEIEIVETLDEAVNRAFELAKELQAKSVLL 428 (459) T ss_pred HHHHHHHHHHCCEEEEEE------------CCCHHHHHHHHHHCCCCCCEEECCCHHHHHHHHHHHHHCCCCCEEEE T ss_conf 399999986406199998------------98999999999736998776985999999999999876589998996 |
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>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
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Probab=100.00 E-value=4.4e-42 Score=279.17 Aligned_cols=315 Identities=20% Similarity=0.277 Sum_probs=210.1 Q ss_pred CEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEECCCCCCCEECCHHHHHHHHHHHHHCCCCCCCCHH Q ss_conf 83999458984799999999999978935141378411012008988847787155889999999998630477677957 Q gi|254780821|r 25 PVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNERFRLGVKGGRGRLVEDVELLDVFRRVRRVKSAQNLTIF 104 (429) Q Consensus 25 ~vI~VtGTnGKttt~~~i~~il~~~g~k~g~~tSPhl~~~~Eri~i~~~~~~g~~i~~~~~~~~~~~i~~~~~~~~~t~F 104 (429) T Consensus 110 ~~IaVTGTnGKTTTtsli~~iL~~~g~~~~~---------------gGNi--G~p~~~---------------------- 150 (448) T PRK03803 110 PIVAITGSNAKSTVTTLVGEMAKAAGKRVAV---------------GGNL--GTPALD---------------------- 150 (448) T ss_pred CEEEECCCCCHHHHHHHHHHHHHHCCCCEEE---------------EEEC--CCHHHH---------------------- T ss_conf 8899858998388999999999865983799---------------4032--761366---------------------- Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCC Q ss_conf 89999999874114462477764447567641356775158986025000000278523445666531137983315444 Q gi|254780821|r 105 ELSIATALVLFSKYPADCAIIEVGLGGSLDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGIIKPGCPVVIGHQ 184 (429) Q Consensus 105 E~lt~~a~~~f~~~~~d~~vlE~GlGGr~DaTnvi~~~~vavITnI~~DHle~LG~tle~Ia~eKa~I~k~~~~~v~~~~ 184 (429) T Consensus 151 ----------~~~~~~~~~VlElSSf-qL~~~~~~-~p~iaVitNI~~DHLD~h~-s~e~Y~~aK~~If~~~~~~v~n~D 217 (448) T PRK03803 151 ----------LLSDDVELYVLELSSF-QLETTDQL-NAEVATVLNISEDHLDRHG-GMLAYHQAKHRIFRGAKQVVVNRD 217 (448) T ss_pred ----------HHCCCCCEEEEECCCC-HHHCCCCC-CCCEEEEECCCHHHHHHHC-CHHHHHHHHHHHHCCCCEEEEECC T ss_conf ----------5258887899986641-12035456-8628998358753654633-899999998777538878999586 Q ss_pred CCHHHHHHHHHHHHHCCCCCCCCCCC---C---CCCCCCCE-EEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH Q ss_conf 71789889999862105665235763---2---10125852-44431033334444443222211111469999875320 Q gi|254780821|r 185 VYDEVREILVSKAEKMGCPYNVYGDD---F---YAFEKNKC-LVYQDKISQTNLTVLGLVGEHQYINAATAICAVQMAGF 257 (429) Q Consensus 185 ~~~~~~~~i~~~a~~~~~~~~~~~~~---~---~~~~~~~~-~~~~~~~~~~~~~~l~l~G~hn~~Na~~Aiaa~~~lg~ 257 (429) T Consensus 218 -d~~~~~l~~~-----~~~~~~f~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~G~HN~~NalAA~a~a~~~Gi 291 (448) T PRK03803 218 -DALTRPLVAD-----GTPCWSFGLNAPDFGAFGLREEDGEKYLAFGFERLLPVRELKIRGAHNQSNALAALALGEAAGL 291 (448) T ss_pred -HHHHHHHHHC-----CCCEEEEECCCCCCCCCCEEECCCEEEEECCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHCCC T ss_conf -0888888654-----8857998357765122316953983999616532143333076762359989999999998299 Q ss_pred CCHHHHCCCCCCCCC-CCCCEEEEECCCCCCCCCCCCEEEEEC-CCCHHHHHHHHHHHHHHCCCCCCCEEEEECC-CCCC Q ss_conf 000110011222233-665303542287544457874599933-6321579988865433114777712431134-6798 Q gi|254780821|r 258 TLEKECINAALQSVQ-WFGRLQKITEGPLLNKLPDHSEVWIDG-GHNPNAGLVVSKEISKLKGSSNKPFYLVIGM-VEGK 334 (429) Q Consensus 258 ~i~~~~I~~gL~~~~-~pGR~e~i~~~~~~~~~~~~~~viiD~-AHNp~s~~~l~~~l~~l~~~~~~~i~~I~G~-~~dK 334 (429) T Consensus 292 --~~e~I~~aL~~F~Gl~hR~E~v~~-------~~Gv~fiNDSKaTN~~at~~Al~~~~~---~~~~~iilI~GG~~K~~ 359 (448) T PRK03803 292 --PMEAMLETLKEFKGLEHRCQWVRE-------VDGVRYYNDSKGTNVGATLAAIEGLGA---DIEGKLVLIAGGQGKGA 359 (448) T ss_pred --CHHHHHHHHHHCCCCCEEEEEEEE-------CCCEEEEECCCCCCHHHHHHHHHHHHH---HCCCCEEEEECCCCCCC T ss_conf --878989988635571205799996-------188899968998997899999996465---23686899937866666 Q ss_pred CHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHCCCCCCCEEEE---E Q ss_conf 9899999888638889998422889984212789899999998549978996998999999998603588679999---4 Q gi|254780821|r 335 KYGRYLEAFVELSPIVLSVSLICRGRERQSISITPKVLMQEAKKLGFQAMACSSMIEALSRVRKINEELPPPLILI---A 411 (429) Q Consensus 335 d~~~~l~~l~~~~d~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~eAi~~a~~~~~~~~~d~VLV---~ 411 (429) T Consensus 360 d~~~l~~~~~~~v~~v~l~------------G~~~~~i~~~l~~-~~~~~~~~~l~~Av~~a~~~a--~~gd~VLlSPa~ 424 (448) T PRK03803 360 DFSELREPVAKYCRAVVLI------------GRDAELIEQALGD-AVPLVRAATLEEAVTQAAELA--QPGDAVLLSPAC 424 (448) T ss_pred CHHHHHHHHHHCCEEEEEE------------CCCHHHHHHHHCC-CCCEEECCCHHHHHHHHHHHC--CCCCEEEECCCC T ss_conf 8799999997366099997------------9599999997506-898799499999999999857--898989989744 Q ss_pred CCH------HHHHHHHHHC Q ss_conf 977------9999999987 Q gi|254780821|r 412 GSL------YLAGEALREN 424 (429) Q Consensus 412 GS~------ylvge~l~~~ 424 (429) T Consensus 425 aSfD~f~nyeeRG~~F~~~ 443 (448) T PRK03803 425 ASLDMFKNFEERGRQFAQA 443 (448) T ss_pred CCCCCCCCHHHHHHHHHHH T ss_conf 0201317999999999999 |
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>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
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Probab=100.00 E-value=8.6e-42 Score=277.35 Aligned_cols=301 Identities=21% Similarity=0.280 Sum_probs=206.3 Q ss_pred CEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEECCCCCCCEECCHHHHHHHHHHHHHCCCCCCCCHH Q ss_conf 83999458984799999999999978935141378411012008988847787155889999999998630477677957 Q gi|254780821|r 25 PVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNERFRLGVKGGRGRLVEDVELLDVFRRVRRVKSAQNLTIF 104 (429) Q Consensus 25 ~vI~VtGTnGKttt~~~i~~il~~~g~k~g~~tSPhl~~~~Eri~i~~~~~~g~~i~~~~~~~~~~~i~~~~~~~~~t~F 104 (429) T Consensus 111 ~~IaVTGTnGKTTTtsli~~iL~~~g~~~~~--------------~G-N--iG~p~~~~~~~------------------ 155 (445) T PRK04308 111 KVIAITGSNGKTTVTSLVGYLCIKCGLDTVI--------------AG-N--IGTPVLEAELQ------------------ 155 (445) T ss_pred CEEEEECCCCCHHHHHHHHHHHHHCCCCEEE--------------EE-E--CCCCCHHHHHH------------------ T ss_conf 5799948998377999999999975996299--------------85-0--37521111444------------------ Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCC Q ss_conf 89999999874114462477764447567641356775158986025000000278523445666531137983315444 Q gi|254780821|r 105 ELSIATALVLFSKYPADCAIIEVGLGGSLDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGIIKPGCPVVIGHQ 184 (429) Q Consensus 105 E~lt~~a~~~f~~~~~d~~vlE~GlGGr~DaTnvi~~~~vavITnI~~DHle~LG~tle~Ia~eKa~I~k~~~~~v~~~~ 184 (429) T Consensus 156 ----------~~~~~~d~~VlElSSf-ql~~~~~~-~p~iavitNi~~DHLD~h~-s~e~Y~~aK~~if~~~~~~vln~d 222 (445) T PRK04308 156 ----------REGKKADVWVLELSSF-QLENTESL-RPTAATVLNISEDHLDRYD-DLLDYAHTKAKIFRGDGVQVLNAD 222 (445) T ss_pred ----------HCCCCCCEEEEEEECC-CCCCCCCC-CCCEEEECCCCHHHHHHHC-CHHHHHHHHHHHCCCCCEEEECCC T ss_conf ----------3278786799996033-44665543-7638998589856754535-999999999974457977999387 Q ss_pred CCHHHHHHHHHHHHHCCCCCCCCC----CCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCH Q ss_conf 717898899998621056652357----6321012585244431033334444443222211111469999875320000 Q gi|254780821|r 185 VYDEVREILVSKAEKMGCPYNVYG----DDFYAFEKNKCLVYQDKISQTNLTVLGLVGEHQYINAATAICAVQMAGFTLE 260 (429) Q Consensus 185 ~~~~~~~~i~~~a~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~~Aiaa~~~lg~~i~ 260 (429) T Consensus 223 -d~~~~~~-~~----~~~~v~~~~~~~~~d~~~~~~~~~-~~~~~~~l~~~~~l~l~G~HN~~NalAAia~a~~lG--i~ 293 (445) T PRK04308 223 -DAFCRAM-KR----AGREVKWFSLEHEADFWLERETGR-LKQGNEDLIATQDIPLQGLHNAANVMAAVALCEAVG--LP 293 (445) T ss_pred -CHHHHHH-HH----CCCCEEEEECCCCCCEEEECCCCE-EEECCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCC--CC T ss_conf -1999999-86----699569981376563689616637-974681145430256676547988999999999829--98 Q ss_pred HHHCCCCCCCCC-CCCCEEEEECCCCCCCCCCCCEEEEEC-CCCHHHHHHHHHHHHHHCCCCCCCEEEEECC-CCCCCHH Q ss_conf 110011222233-665303542287544457874599933-6321579988865433114777712431134-6798989 Q gi|254780821|r 261 KECINAALQSVQ-WFGRLQKITEGPLLNKLPDHSEVWIDG-GHNPNAGLVVSKEISKLKGSSNKPFYLVIGM-VEGKKYG 337 (429) Q Consensus 261 ~~~I~~gL~~~~-~pGR~e~i~~~~~~~~~~~~~~viiD~-AHNp~s~~~l~~~l~~l~~~~~~~i~~I~G~-~~dKd~~ 337 (429) T Consensus 294 ~~~I~~aL~~F~Gl~hR~E~v~~-------~~GV~~iNDSKaTn~~at~~Al~~~~-------~~i~lI~GG~~Kg~d~~ 359 (445) T PRK04308 294 REALLEHVKTFQGLPHRVEKIGE-------KNGVVFIDDSKGTNVGATAAAIAGLQ-------NPLFVILGGMGKGQDFT 359 (445) T ss_pred HHHHHHHHHHCCCCCCCEEEEEE-------ECCEEEEECCCCCCHHHHHHHHHHCC-------CCEEEEECCCCCCCCHH T ss_conf 89999998757999986289986-------48988980798888899999998277-------97799976766777869 Q ss_pred HHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHCCCCCCCEEEE Q ss_conf 9999888638889998422889984212789899999998549978996998999999998603588679999 Q gi|254780821|r 338 RYLEAFVELSPIVLSVSLICRGRERQSISITPKVLMQEAKKLGFQAMACSSMIEALSRVRKINEELPPPLILI 410 (429) Q Consensus 338 ~~l~~l~~~~d~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~eAi~~a~~~~~~~~~d~VLV 410 (429) T Consensus 360 ~l~~~~~~~~~~v~~~------------G~~~~~i~~~l~~~~~~~~~~~~l~~Av~~a~~~a--~~g~~VLl 418 (445) T PRK04308 360 PLRDALAGKAKGVFLI------------GVDAPQIRRDLDGCGLNLTDCATLEEAVQTAYAQA--EAGDIVLL 418 (445) T ss_pred HHHHHHHHHCEEEEEE------------CCCHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHC--CCCCEEEE T ss_conf 9999987525699998------------97999999988637985587687999999999748--89898998 |
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>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
---|
Probab=100.00 E-value=6.7e-42 Score=278.02 Aligned_cols=299 Identities=21% Similarity=0.283 Sum_probs=203.9 Q ss_pred CEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEECCCCCCCEECCHHHHHHHHHHHHHCCCCCCCCHH Q ss_conf 83999458984799999999999978935141378411012008988847787155889999999998630477677957 Q gi|254780821|r 25 PVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNERFRLGVKGGRGRLVEDVELLDVFRRVRRVKSAQNLTIF 104 (429) Q Consensus 25 ~vI~VtGTnGKttt~~~i~~il~~~g~k~g~~tSPhl~~~~Eri~i~~~~~~g~~i~~~~~~~~~~~i~~~~~~~~~t~F 104 (429) T Consensus 113 ~~IaVTGTnGKTTTt~ll~~iL~~~g~~~~~--------------~GN---iG~p~~~~--~------------------ 155 (450) T PRK02472 113 PIIGITGSNGKTTTTTLIAEMLNAGGQHGLL--------------AGN---IGYPASEV--A------------------ 155 (450) T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCCEEE--------------EEE---CCCCCHHH--H------------------ T ss_conf 7899827999731999999999974997399--------------941---67641245--5------------------ Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHCCCCCCCHHHHHHHHHHHCC---CCCCCCC Q ss_conf 8999999987411446247776444756764135677515898602500000027852344566653113---7983315 Q gi|254780821|r 105 ELSIATALVLFSKYPADCAIIEVGLGGSLDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGIIK---PGCPVVI 181 (429) Q Consensus 105 E~lt~~a~~~f~~~~~d~~vlE~GlGGr~DaTnvi~~~~vavITnI~~DHle~LG~tle~Ia~eKa~I~k---~~~~~v~ 181 (429) T Consensus 156 ----------~~~~~~d~~VlE~SS-fql~~~~~~-~p~iavitNI~~DHLD~h~-s~e~Y~~aK~~i~~~~~~~~~~v~ 222 (450) T PRK02472 156 ----------QKATADDTLVTELSS-FQLMGVETF-RPHIAVITNIFEAHLDYHG-TFENYVAAKWNIQKNQTEDDYLVL 222 (450) T ss_pred ----------HCCCCCCEEEEEECC-CCHHHHCCC-CCCEEEEECCCHHHHHHHC-CHHHHHHHHHHHHHCCCCCCEEEE T ss_conf ----------447898779999065-514100225-8868999368877976634-899999999999955996877999 Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCC---CCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC Q ss_conf 4447178988999986210566523576321---0125852444310333344444432222111114699998753200 Q gi|254780821|r 182 GHQVYDEVREILVSKAEKMGCPYNVYGDDFY---AFEKNKCLVYQDKISQTNLTVLGLVGEHQYINAATAICAVQMAGFT 258 (429) Q Consensus 182 ~~~~~~~~~~~i~~~a~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~~Aiaa~~~lg~~ 258 (429) T Consensus 223 n~D-d~~~~~l~----~~~~~~~i~fs~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~l~G~HN~~NalaAia~a~~lG-- 294 (450) T PRK02472 223 NAD-QEEVKELA----KQTKATVVPFSTTKEVDGAYIKDGALYFKGE-KIMAADDIVLPGEHNLENILAAIAVAKLAG-- 294 (450) T ss_pred ECC-CHHHHHHH----HHCCCEEEEECCCCCCCCCEEECCEEEECCE-EEEEHHHCCCCCHHHHHHHHHHHHHHHHCC-- T ss_conf 588-79999999----7579708985367546651762787998884-566423236775534999999999999829-- Q ss_pred CHHHHCCCCCCCCC-CCCCEEEEECCCCCCCCCCCCEEEEEC-CCCHHHHHHHHHHHHHHCCCCCCCEEEEECCC-CCCC Q ss_conf 00110011222233-665303542287544457874599933-63215799888654331147777124311346-7989 Q gi|254780821|r 259 LEKECINAALQSVQ-WFGRLQKITEGPLLNKLPDHSEVWIDG-GHNPNAGLVVSKEISKLKGSSNKPFYLVIGMV-EGKK 335 (429) Q Consensus 259 i~~~~I~~gL~~~~-~pGR~e~i~~~~~~~~~~~~~~viiD~-AHNp~s~~~l~~~l~~l~~~~~~~i~~I~G~~-~dKd 335 (429) T Consensus 295 i~~~~i~~aL~~F~Gl~hRlE~v~~-------~~Gv~~iNDSKaTN~~at~~Al~~~~-------~~iilI~GG~~Kg~d 360 (450) T PRK02472 295 VSNEAIAEVLSTFTGVKHRLQYVGT-------INGRKFYNDSKATNILATQKALSGFN-------QPVILLAGGLDRGNE 360 (450) T ss_pred CCHHHHHHHHHHCCCCCEEEEEEEE-------ECCEEEEECCCCCCHHHHHHHHHCCC-------CCEEEEEECCCCCCC T ss_conf 9878999998744884337999999-------74778982688889999999984589-------987999915556888 Q ss_pred HHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHCCCCCCCEEEE Q ss_conf 899999888638889998422889984212789899999998549978996998999999998603588679999 Q gi|254780821|r 336 YGRYLEAFVELSPIVLSVSLICRGRERQSISITPKVLMQEAKKLGFQAMACSSMIEALSRVRKINEELPPPLILI 410 (429) Q Consensus 336 ~~~~l~~l~~~~d~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~eAi~~a~~~~~~~~~d~VLV 410 (429) T Consensus 361 ~~~l~~~~~-~vk~v~~---~---------G~~~~~i~~~~~~~~~~~~~~~~l~~Av~~a~~~a--~~gd~VLl 420 (450) T PRK02472 361 FDELIPYLK-NVKAMVV---F---------GETAPKLARAANKAGITIVEADNVEDAVPKAYALS--EPGDVILL 420 (450) T ss_pred HHHHHHHHH-CCCEEEE---E---------CCCHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHC--CCCCEEEE T ss_conf 799999973-7689999---6---------88999999999737971898799999999999858--89598997 |
|
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
---|
Probab=100.00 E-value=4.6e-41 Score=272.84 Aligned_cols=307 Identities=19% Similarity=0.224 Sum_probs=208.1 Q ss_pred CEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEECCCCCCCEECCHHHHHHHHHHHHHCCCCCCCCHH Q ss_conf 83999458984799999999999978935141378411012008988847787155889999999998630477677957 Q gi|254780821|r 25 PVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNERFRLGVKGGRGRLVEDVELLDVFRRVRRVKSAQNLTIF 104 (429) Q Consensus 25 ~vI~VtGTnGKttt~~~i~~il~~~g~k~g~~tSPhl~~~~Eri~i~~~~~~g~~i~~~~~~~~~~~i~~~~~~~~~t~F 104 (429) T Consensus 123 ~iIaVTGTnGKTTTt~li~~iL~~~g~~~~~---------------~GNI--G~p~l~~-l~-------~~~~------- 170 (501) T PRK02006 123 KVLAITGTNGKTTTTSLTGLLCERAGKKVAV---------------AGNI--SPAALDK-LA-------EAID------- 170 (501) T ss_pred CEEEEECCCCHHHHHHHHHHHHHHCCCCEEE---------------ECCC--CCHHHHH-HH-------HHHC------- T ss_conf 4899938996687999999999976997465---------------2564--6102677-87-------6422------- Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCC Q ss_conf 89999999874114462477764447567641356775158986025000000278523445666531137983315444 Q gi|254780821|r 105 ELSIATALVLFSKYPADCAIIEVGLGGSLDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGIIKPGCPVVIGHQ 184 (429) Q Consensus 105 E~lt~~a~~~f~~~~~d~~vlE~GlGGr~DaTnvi~~~~vavITnI~~DHle~LG~tle~Ia~eKa~I~k~~~~~v~~~~ 184 (429) T Consensus 171 -----------~~~~~d~~VlElSS-fQLe~~~~~-~p~vaVilNIs~DHLD~h~-s~e~Y~~aK~rif~~~~~~V~n~D 236 (501) T PRK02006 171 -----------AAALPDVWVLELSS-FQLETTHTF-APDAATVLNITQDHLDWHG-SMAAYAAAKGRIFGPATVRVLNRD 236 (501) T ss_pred -----------CCCCCCEEEEEECH-HHHCCCCCC-CCCEEEEECCCHHHHHHHC-CHHHHHHHHHHHHCCCCEEEEECC T ss_conf -----------57768689999664-675756557-9678999078865644423-799999999987234855999488 Q ss_pred CCHHHHHHHHHHHHHCCCCCCCCCCC-------CCCCCCC-CEEEEEE--------------------------CCCCCC Q ss_conf 71789889999862105665235763-------2101258-5244431--------------------------033334 Q gi|254780821|r 185 VYDEVREILVSKAEKMGCPYNVYGDD-------FYAFEKN-KCLVYQD--------------------------KISQTN 230 (429) Q Consensus 185 ~~~~~~~~i~~~a~~~~~~~~~~~~~-------~~~~~~~-~~~~~~~--------------------------~~~~~~ 230 (429) T Consensus 237 -D~~~~~~~~~~~~~~--~~~~fg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 313 (501) T PRK02006 237 -DALVMAMAPPAAAAD--APVTFGLDEPAQDGDYGLLRENGMAWLVEAEDRDAADEPAPTRRRKKDAAPPPDIALKRLMP 313 (501) T ss_pred -CHHHHHHHHHCCCCC--EEEEECCCCCCCCCCEEEEECCCCEEEEECCCCCCCCCCHHHHHHCCCCCCCCCCCHHHCCC T ss_conf -888998766505664--16885057756665402562377057873032210000001221023334443310110355 Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHCCCCCCCCC-CCCCEEEEECCCCCCCCCCCCEEEEEC-CCCHHHHHH Q ss_conf 444443222211111469999875320000110011222233-665303542287544457874599933-632157998 Q gi|254780821|r 231 LTVLGLVGEHQYINAATAICAVQMAGFTLEKECINAALQSVQ-WFGRLQKITEGPLLNKLPDHSEVWIDG-GHNPNAGLV 308 (429) Q Consensus 231 ~~~l~l~G~hn~~Na~~Aiaa~~~lg~~i~~~~I~~gL~~~~-~pGR~e~i~~~~~~~~~~~~~~viiD~-AHNp~s~~~ 308 (429) T Consensus 314 ~~~L~l~G~HN~~NalAA~a~a~~lG--i~~e~i~~aL~~F~GlpHR~E~V~~-------~~gv~~iNDSKaTN~~at~~ 384 (501) T PRK02006 314 ADALRIRGLHNAANALAALALARAIG--LPAAPLLHGLREYRGEPHRVEVIAT-------IDDVDYVDDSKGTNVGATVA 384 (501) T ss_pred CHHCCCCCCHHHHHHHHHHHHHHHCC--CCHHHHHHHHCCCCCCCCCEEEEEE-------ECCEEEECCCCCCCHHHHHH T ss_conf 20103567206999999999999859--9878987663155787652589999-------67889973787789899999 Q ss_pred HHHHHHHHCCCCCCCEEEEECC-CCCCCHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEC Q ss_conf 8865433114777712431134-679898999998886388899984228899842127898999999985499789969 Q gi|254780821|r 309 VSKEISKLKGSSNKPFYLVIGM-VEGKKYGRYLEAFVELSPIVLSVSLICRGRERQSISITPKVLMQEAKKLGFQAMACS 387 (429) Q Consensus 309 l~~~l~~l~~~~~~~i~~I~G~-~~dKd~~~~l~~l~~~~d~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 387 (429) T Consensus 385 Al~s~-------~~~iilI~GG~~K~~d~~~L~~~~~~~~k~vil~------------G~~~~~i~~~l~~~~~~~~~~~ 445 (501) T PRK02006 385 ALDGL-------AQRVVLIAGGDGKGQDFSPLAAPVARWARAVVLI------------GRDAPAIRAALADTGVPLVDAA 445 (501) T ss_pred HHHHC-------CCCEEEEEECCCCCCCHHHHHHHHHHHCEEEEEE------------CCCHHHHHHHHHCCCCEEEECC T ss_conf 99707-------8974999805777779799999998537099998------------9899999999751798079859 Q ss_pred CHHHHHHHHHHHCCCCCCCEEEE Q ss_conf 98999999998603588679999 Q gi|254780821|r 388 SMIEALSRVRKINEELPPPLILI 410 (429) Q Consensus 388 ~~~eAi~~a~~~~~~~~~d~VLV 410 (429) T Consensus 446 ~l~~Av~~a~~~a--~~gd~VLl 466 (501) T PRK02006 446 TLEEAVRAAAELA--QPGDAVLL 466 (501) T ss_pred CHHHHHHHHHHHC--CCCCEEEE T ss_conf 9999999999757--89798998 |
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>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
---|
Probab=100.00 E-value=6.4e-41 Score=271.99 Aligned_cols=298 Identities=16% Similarity=0.173 Sum_probs=197.1 Q ss_pred CEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEECCCCCCCEECCHHHHHHHHHHHHHCCCCCCCCHH Q ss_conf 83999458984799999999999978935141378411012008988847787155889999999998630477677957 Q gi|254780821|r 25 PVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNERFRLGVKGGRGRLVEDVELLDVFRRVRRVKSAQNLTIF 104 (429) Q Consensus 25 ~vI~VtGTnGKttt~~~i~~il~~~g~k~g~~tSPhl~~~~Eri~i~~~~~~g~~i~~~~~~~~~~~i~~~~~~~~~t~F 104 (429) T Consensus 106 ~iIaVTGTnGKTTTt~li~~iL~~~g~~~~~---------------gGNi--G~p~~~---------------------- 146 (438) T PRK03806 106 PIVAITGSNGKSTVTTLVGEMAKAAGVNVGV---------------GGNI--GLPALM---------------------- 146 (438) T ss_pred CEEEEECCCCCHHHHHHHHHHHHHCCCCEEE---------------EECC--CCCHHH---------------------- T ss_conf 8899948998489999999999865997567---------------7157--752777---------------------- Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCC Q ss_conf 89999999874114462477764447567641356775158986025000000278523445666531137983315444 Q gi|254780821|r 105 ELSIATALVLFSKYPADCAIIEVGLGGSLDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGIIKPGCPVVIGHQ 184 (429) Q Consensus 105 E~lt~~a~~~f~~~~~d~~vlE~GlGGr~DaTnvi~~~~vavITnI~~DHle~LG~tle~Ia~eKa~I~k~~~~~v~~~~ 184 (429) T Consensus 147 ----------~~~~~~d~~VlElSS-fQLe~~~~~-~p~vavilNi~~DHLDr~~~s~e~Y~~aK~rI~~~~~~~v~n~d 214 (438) T PRK03806 147 ----------LLDQDCELYVLELSS-FQLETTSSL-QAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYENAKVCVVNAD 214 (438) T ss_pred ----------HHCCCCCEEEEECCC-CCCCCCCCC-CCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCC T ss_conf ----------513767579983245-330023545-76378863588878877654599999999988627968999475 Q ss_pred CCHHHHHHHHHHHHHCCCCCCCCCC---CCCCCCCCC-EEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCH Q ss_conf 7178988999986210566523576---321012585-244431033334444443222211111469999875320000 Q gi|254780821|r 185 VYDEVREILVSKAEKMGCPYNVYGD---DFYAFEKNK-CLVYQDKISQTNLTVLGLVGEHQYINAATAICAVQMAGFTLE 260 (429) Q Consensus 185 ~~~~~~~~i~~~a~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~l~l~G~hn~~Na~~Aiaa~~~lg~~i~ 260 (429) T Consensus 215 -D~~~~~~-~~----~~~~~i~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~HN~~NalaA~a~a~~lG--i~ 286 (438) T PRK03806 215 -DALTMPV-RG----ADERCVSFGVNMGDYHLNRQQGETWLRVKGEKVLNVKEMKLSGRHNYTNALAALALADAVG--IP 286 (438) T ss_pred -CHHHHHH-HH----CCCCEEEEECCCCCEEEEECCCCEEEEECCEEEEECHHCCCCCCHHHHHHHHHHHHHHHCC--CC T ss_conf -1877986-40----3565589823566436760577368973780354012126667204988999999999839--99 Q ss_pred HHHCCCCCCCCC-CCCCEEEEECCCCCCCCCCCCEEEEEC-CCCHHHHHHHHHHHHHHCCCCCCCEEEEECC-CCCCCHH Q ss_conf 110011222233-665303542287544457874599933-6321579988865433114777712431134-6798989 Q gi|254780821|r 261 KECINAALQSVQ-WFGRLQKITEGPLLNKLPDHSEVWIDG-GHNPNAGLVVSKEISKLKGSSNKPFYLVIGM-VEGKKYG 337 (429) Q Consensus 261 ~~~I~~gL~~~~-~pGR~e~i~~~~~~~~~~~~~~viiD~-AHNp~s~~~l~~~l~~l~~~~~~~i~~I~G~-~~dKd~~ 337 (429) T Consensus 287 ~e~i~~aL~sF~gl~HRlE~v~~-------~~gv~fiNDSKaTN~~a~~~Al~s~~~-----~~~i~lI~GG~~K~~d~~ 354 (438) T PRK03806 287 RASSLKALTTFTGLPHRFQLVLE-------HNGVRWINDSKATNVGSTEAALNGLHV-----DGTLHLLLGGDGKSADFS 354 (438) T ss_pred HHHHHHHHHCCCCCCCCEEEEEE-------ECCEEEEECCCCCCHHHHHHHHHHCCC-----CCCEEEEECCCCCCCCHH T ss_conf 89986552047999973389999-------799999989721589999999982620-----397799954775557879 Q ss_pred HHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHCCCCCCCEEEE Q ss_conf 9999888638889998422889984212789899999998549978996998999999998603588679999 Q gi|254780821|r 338 RYLEAFVELSPIVLSVSLICRGRERQSISITPKVLMQEAKKLGFQAMACSSMIEALSRVRKINEELPPPLILI 410 (429) Q Consensus 338 ~~l~~l~~~~d~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~eAi~~a~~~~~~~~~d~VLV 410 (429) T Consensus 355 ~l~~~~~~~~~~~---~~~G~---------~~~~~~~~~~---~~~~~~~~l~~Av~~a~~~a--~~gd~VLl 410 (438) T PRK03806 355 PLARYLNGDNIRL---YCFGR---------DGAQLAALRP---EVAQLTETMEQAMRLLAPRV--QPGDMVLL 410 (438) T ss_pred HHHHHHHCCCEEE---EEECC---------CHHHHHHHCC---CCCHHHHHHHHHHHHHHHHC--CCCCEEEE T ss_conf 9999861265699---99777---------8899996412---20415400999999999866--89998998 |
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>PRK11930 putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase; Provisional | Back alignment and domain information |
---|
Probab=100.00 E-value=1.3e-40 Score=270.17 Aligned_cols=340 Identities=17% Similarity=0.224 Sum_probs=215.9 Q ss_pred CCCHHHHHHHHHHCCCHHHHCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEECCCCCCCEECCH Q ss_conf 78889999999872995883598399945898479999999999997893514137841101200898884778715588 Q gi|254780821|r 3 ADSLLKMGYLLEDLGRPQDRLPPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNERFRLGVKGGRGRLVED 82 (429) Q Consensus 3 ~~~l~r~~~ll~~lg~P~~~~~~vI~VtGTnGKttt~~~i~~il~~~g~k~g~~tSPhl~~~~Eri~i~~~~~~g~~i~~ 82 (429) T Consensus 91 ~Dtl~ALq~LA~~~R~-~~~~-~VIgITGSnGKTttKe~L~~iLs~~~-~v--~~T~g--n~------N------n~I-- 149 (824) T PRK11930 91 KNPLKALQKLAAYYRK-QFDI-PIIGITGSNGKTIVKEWLYQLLSPDY-NI--VRSPR--SY------N------SQI-- 149 (824) T ss_pred CCHHHHHHHHHHHHHH-HCCC-CEEEEECCCCHHHHHHHHHHHHHCCC-CE--ECCCC--CC------C------CCC-- T ss_conf 9899999999999997-4899-89999499978999999999974578-68--52887--66------8------742-- Q ss_pred HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHH--HHHHHHCCCCCCCEEEEEECCCHHCCCCCC Q ss_conf 999999999863047767795789999999874114462477764447--567641356775158986025000000278 Q gi|254780821|r 83 VELLDVFRRVRRVKSAQNLTIFELSIATALVLFSKYPADCAIIEVGLG--GSLDATNIIEKVAVSVITSISLDHEKILGN 160 (429) Q Consensus 83 ~~~~~~~~~i~~~~~~~~~t~FE~lt~~a~~~f~~~~~d~~vlE~GlG--Gr~DaTnvi~~~~vavITnI~~DHle~LG~ 160 (429) T Consensus 150 ---------------GvPLTll----------~l~~~~e~aVlEmG~s~~GEI~~L~~i~~P~igVITNIg~aHle~fg- 203 (824) T PRK11930 150 ---------------GVPLSVW----------QMNEEHELGIFEAGISTMGEMEALQKIIKPTIGILTNIGGAHQENFF- 203 (824) T ss_pred ---------------CHHHHHH----------CCCCCCCEEEEEECCCCCCHHHHHHHHHCCCEEEEECCCHHHHHHCC- T ss_conf ---------------5899986----------49845808999907898146999953527999999075098766458- Q ss_pred CHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCC----CCCC---CCCCC--EEEEEECCCCCCC Q ss_conf 5234456665311379833154447178988999986210566523576----3210---12585--2444310333344 Q gi|254780821|r 161 TVSAIAKDKSGIIKPGCPVVIGHQVYDEVREILVSKAEKMGCPYNVYGD----DFYA---FEKNK--CLVYQDKISQTNL 231 (429) Q Consensus 161 tle~Ia~eKa~I~k~~~~~v~~~~~~~~~~~~i~~~a~~~~~~~~~~~~----~~~~---~~~~~--~~~~~~~~~~~~~ 231 (429) T Consensus 204 S~e~ia~eK~eL~~~~~~~i~n~d-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 280 (824) T PRK11930 204 DIQEKCMEKLKLFKDCDVIIYNGD-NEEISNCIHKSNLT-RREIAWSRTDSEAPLYISRSEKKEFHTHIQYRYL-GMDRY 280 (824) T ss_pred CHHHHHHHHHHHHHCCCCEEEECC-CHHHHHHHHHHCCC-CCEEEEECCCCCCCEEEEEEEECCCCEEEEEEEC-CEEEE T ss_conf 999999999997621781799468-57899999763367-6289983478665346665430588169999968-90699 Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHCCCCCCCCC-CCCCEEEEECCCCCCCCCCCCEEEEECCC--CHHHHHH Q ss_conf 44443222211111469999875320000110011222233-66530354228754445787459993363--2157998 Q gi|254780821|r 232 TVLGLVGEHQYINAATAICAVQMAGFTLEKECINAALQSVQ-WFGRLQKITEGPLLNKLPDHSEVWIDGGH--NPNAGLV 308 (429) Q Consensus 232 ~~l~l~G~hn~~Na~~Aiaa~~~lg~~i~~~~I~~gL~~~~-~pGR~e~i~~~~~~~~~~~~~~viiD~AH--Np~s~~~ 308 (429) T Consensus 281 ~~lp~~G~h~v~NAlaA~ava~~lGv~~--~~i~~~L~~~~p~~~Rlev~~g-------~~g~-~iIdDsYNAnP~Sm~a 350 (824) T PRK11930 281 FQIPFIDDASIENSIHCLAVALYLMYSA--DQITKRFARLEPVEMRLEVKEG-------INNC-TLINDSYNSDLASLDI 350 (824) T ss_pred EEECCCCHHHHHHHHHHHHHHHHCCCCH--HHHHHHHHHCCCCCCEEEEEEC-------CCCC-EEEECCCCCCHHHHHH T ss_conf 9936998899999999999999839999--9999998418965451379997-------9980-9995666699899999 Q ss_pred HHHHHHHHCCCCCCCEEEEECCCC--CCCHHHHHHHHHHH-----CCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHC-C Q ss_conf 886543311477771243113467--98989999988863-----888999842288998421278989999999854-9 Q gi|254780821|r 309 VSKEISKLKGSSNKPFYLVIGMVE--GKKYGRYLEAFVEL-----SPIVLSVSLICRGRERQSISITPKVLMQEAKKL-G 380 (429) Q Consensus 309 l~~~l~~l~~~~~~~i~~I~G~~~--dKd~~~~l~~l~~~-----~d~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~ 380 (429) T Consensus 351 ALdtL~~~~~--~~RrI~ILgDMlElG~~~~~ly~~Vg~l~~~~~i~~ligi--------------G-~~~~~~~~~~~~ 413 (824) T PRK11930 351 ALDFLERRKQ--SKKKTLILSDILQSGQSPEELYRKVAQLISSAKINRVIGI--------------G-EEISSEAKKFEG 413 (824) T ss_pred HHHHHHHCCC--CCCEEEEECCHHHCCCCCHHHHHHHHHHHHHCCCCEEEEE--------------C-HHHHHHHHHCCC T ss_conf 9999974035--7856999877443287607899999999997688789981--------------8-899999986457 Q ss_pred CCEEEECCHHHHHHHHHHHCCCCCCCEEEEECC----HHHHHHHH Q ss_conf 978996998999999998603588679999497----79999999 Q gi|254780821|r 381 FQAMACSSMIEALSRVRKINEELPPPLILIAGS----LYLAGEAL 421 (429) Q Consensus 381 ~~~~~~~~~~eAi~~a~~~~~~~~~d~VLV~GS----~ylvge~l 421 (429) T Consensus 414 ~~~~~~~~~~~~l~~~~~--~~~~~~~iLikGar~~~~e~i~~~l 456 (824) T PRK11930 414 IEKYFFKDTEAFLASLEK--KKFSNELILIKGSRKFQFEQISERL 456 (824) T ss_pred CCEEEECCHHHHHHCCCC--CCCCCCEEEEECCCCCCHHHHHHHH T ss_conf 765895689999742741--1368977998055456689999999 |
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>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
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Probab=100.00 E-value=2.1e-40 Score=268.74 Aligned_cols=316 Identities=21% Similarity=0.259 Sum_probs=200.3 Q ss_pred CEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEECCCCCCCEECCHHHHHHHHHHHHHCCCCCCCCHH Q ss_conf 83999458984799999999999978935141378411012008988847787155889999999998630477677957 Q gi|254780821|r 25 PVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNERFRLGVKGGRGRLVEDVELLDVFRRVRRVKSAQNLTIF 104 (429) Q Consensus 25 ~vI~VtGTnGKttt~~~i~~il~~~g~k~g~~tSPhl~~~~Eri~i~~~~~~g~~i~~~~~~~~~~~i~~~~~~~~~t~F 104 (429) T Consensus 115 ~iIaVTGTnGKTTTtsli~~iL~~~g~~~~~---------------gGNI--G~p~l~l---------------~----- 157 (457) T PRK01390 115 PFIAITGTNGKSTTTALIAHLLRQAGRDVQM---------------GGNI--GTAILSL---------------E----- 157 (457) T ss_pred CEEEEECCCCHHHHHHHHHHHHHHCCCCEEE---------------ECCC--CHHHCCC---------------C----- T ss_conf 8899928996498999999999973998699---------------6662--4011123---------------4----- Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCC Q ss_conf 89999999874114462477764447567641356775158986025000000278523445666531137983315444 Q gi|254780821|r 105 ELSIATALVLFSKYPADCAIIEVGLGGSLDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGIIKPGCPVVIGHQ 184 (429) Q Consensus 105 E~lt~~a~~~f~~~~~d~~vlE~GlGGr~DaTnvi~~~~vavITnI~~DHle~LG~tle~Ia~eKa~I~k~~~~~v~~~~ 184 (429) T Consensus 158 -----------~~~~~~~~VlElSSf-Ql~~~~~~-~p~iavitNI~~DHLD~h~-s~e~Y~~aK~~i~~~~~~~Vin~D 223 (457) T PRK01390 158 -----------PPKAGRVYVVECSSY-QIDLTPSL-DPTVGILLNLTPDHLDRHG-TMEHYAAIKERLVAGAGTAVIGVD 223 (457) T ss_pred -----------CCCCCCEEEEEECCC-HHHHHHCC-CCCEEEEECCCHHHHHHCC-CHHHHHHHHHHHHCCCCEEEEECC T ss_conf -----------688996699992575-26544006-9988999178877865508-999999999998557986999688 Q ss_pred CCHHHHHHHHHHHHHCCCCCCCCCCCC----CCCCCCCEEEEEECCCC---CCCC-CCCCCCCCCCCCHHHHHHHHHHHH Q ss_conf 717898899998621056652357632----10125852444310333---3444-444322221111146999987532 Q gi|254780821|r 185 VYDEVREILVSKAEKMGCPYNVYGDDF----YAFEKNKCLVYQDKISQ---TNLT-VLGLVGEHQYINAATAICAVQMAG 256 (429) Q Consensus 185 ~~~~~~~~i~~~a~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~---~~~~-~l~l~G~hn~~Na~~Aiaa~~~lg 256 (429) T Consensus 224 -D~~~~~l~-~~~~~~~~~~~~~s~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~G~HN~~NalAAia~a~~lG 301 (457) T PRK01390 224 -DAYCQAIA-DRLERAGKRVVRISVEKPLARGIYADGGKLVRATGGARHEIADLAGIGSLRGRHNAQNAAAAVAACLALG 301 (457) T ss_pred -CHHHHHHH-HHHHHCCCEEEEEECCCCCCCCEEEECCEEEECCCCCEEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHCC T ss_conf -88899999-9987638849997167656686498578899847983454431432345775426999999999999818 Q ss_pred HCCHHHHCCCCCCCCC-CCCCEEEEECCCCCCCCCCCCEEEEEC-CCCHHHHHHHHHHHHHHCCCCCCCEEEEECCC-CC Q ss_conf 0000110011222233-665303542287544457874599933-63215799888654331147777124311346-79 Q gi|254780821|r 257 FTLEKECINAALQSVQ-WFGRLQKITEGPLLNKLPDHSEVWIDG-GHNPNAGLVVSKEISKLKGSSNKPFYLVIGMV-EG 333 (429) Q Consensus 257 ~~i~~~~I~~gL~~~~-~pGR~e~i~~~~~~~~~~~~~~viiD~-AHNp~s~~~l~~~l~~l~~~~~~~i~~I~G~~-~d 333 (429) T Consensus 302 --i~~e~i~~aL~~F~Gl~hR~E~V~~-------~~Gv~~iNDSKaTN~~at~~Al~s~------~--~i~lI~GG~~K~ 364 (457) T PRK01390 302 --VSPEEIQAGLRSFPGLAHRMEQVGR-------RGKVLFVNDSKATNADAAAPALSSF------P--NIYWIAGGKPKA 364 (457) T ss_pred --CCHHHHHHHHHHCCCCCCCEEEEEE-------CCCCEEECCCCCCCHHHHHHHHHCC------C--CEEEEECCCCCC T ss_conf --9899999999748999985279754-------2783385377678989999999737------8--859994504788 Q ss_pred CCHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHCC--CCCCCEEEE- Q ss_conf 89899999888638889998422889984212789899999998549978996998999999998603--588679999- Q gi|254780821|r 334 KKYGRYLEAFVELSPIVLSVSLICRGRERQSISITPKVLMQEAKKLGFQAMACSSMIEALSRVRKINE--ELPPPLILI- 410 (429) Q Consensus 334 Kd~~~~l~~l~~~~d~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~eAi~~a~~~~~--~~~~d~VLV- 410 (429) T Consensus 365 ~d~~~l~~~~~~-v~~~~---li---------G~~~~~~~~~l~~-~~~~~~~~~l~~av~~a~~~a~~~~~~gd~VLlS 430 (457) T PRK01390 365 GGIESLAPFFPR-IAKAY---LI---------GEAAEEFAATLGG-AVPYEISGTLEAAVAAAARDAAASGAPEPVVLLS 430 (457) T ss_pred CCHHHHHHHHHC-CCEEE---EE---------CCCHHHHHHHHHC-CCCEEECCCHHHHHHHHHHHHHHCCCCCCEEEEC T ss_conf 897999998743-35999---98---------9888999998736-7987985989999999999998518999989979 Q ss_pred --ECCH------HHHHHHHHHC Q ss_conf --4977------9999999987 Q gi|254780821|r 411 --AGSL------YLAGEALREN 424 (429) Q Consensus 411 --~GS~------ylvge~l~~~ 424 (429) T Consensus 431 PacaSfD~f~nyeeRG~~Fk~~ 452 (457) T PRK01390 431 PACASFDQFKNFEVRGDAFREL 452 (457) T ss_pred CCCCCCCCCCCHHHHHHHHHHH T ss_conf 6240401426999999999999 |
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>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase; InterPro: IPR005758 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment | Back alignment and domain information |
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Probab=100.00 E-value=2.7e-40 Score=268.09 Aligned_cols=349 Identities=20% Similarity=0.222 Sum_probs=232.0 Q ss_pred HHHHHHHHHHCCCHHHHCC-CEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEECCC----CCCCEEC Q ss_conf 8999999987299588359-8399945898479999999999997893514137841101200898884----7787155 Q gi|254780821|r 6 LLKMGYLLEDLGRPQDRLP-PVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNERFRLGVK----GGRGRLV 80 (429) Q Consensus 6 l~r~~~ll~~lg~P~~~~~-~vI~VtGTnGKttt~~~i~~il~~~g~k~g~~tSPhl~~~~Eri~i~~~----~~~g~~i 80 (429) T Consensus 94 ~~R~~~Lael~~-----~~k~~iaVaGtHGKTTTTamia~~~~~aGLdPt~-------------~~GG~~~~~~~Na~~g 155 (491) T TIGR01082 94 IRRAEMLAELMR-----KRKESIAVAGTHGKTTTTAMIAVILKEAGLDPTV-------------IVGGEVKEAGTNARLG 155 (491) T ss_pred ECHHHHHHHHHH-----HHCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCE-------------EECCCCCCCCCCEEEC T ss_conf 337899999986-----2087079983687256899999999844999768-------------9866436657743571 Q ss_pred CHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH--HHCCCCCCCEEEEEECCCHHCC-C Q ss_conf 889999999998630477677957899999998741144624777644475676--4135677515898602500000-0 Q gi|254780821|r 81 EDVELLDVFRRVRRVKSAQNLTIFELSIATALVLFSKYPADCAIIEVGLGGSLD--ATNIIEKVAVSVITSISLDHEK-I 157 (429) Q Consensus 81 ~~~~~~~~~~~i~~~~~~~~~t~FE~lt~~a~~~f~~~~~d~~vlE~GlGGr~D--aTnvi~~~~vavITnI~~DHle-~ 157 (429) T Consensus 156 ~-------------------------------------~~~~lvaEaD---ESd~~~sFl~~~P~~ai~TNie~DH~D~t 195 (491) T TIGR01082 156 S-------------------------------------SGEYLVAEAD---ESDRSASFLHLQPEVAIVTNIEPDHLDNT 195 (491) T ss_pred C-------------------------------------CCCEEEEEEE---ECCCCCCHHCCCCCEEEECCCCCCCCCCC T ss_conf 4-------------------------------------6867999987---23776401206985799747774347766 Q ss_pred CCCCHHHH--HHHHHH-HCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC-CCCCCC---CC--CCC---CCCCC--EEEEE Q ss_conf 27852344--566653-1137983315444717898899998621056-652357---63--210---12585--24443 Q gi|254780821|r 158 LGNTVSAI--AKDKSG-IIKPGCPVVIGHQVYDEVREILVSKAEKMGC-PYNVYG---DD--FYA---FEKNK--CLVYQ 223 (429) Q Consensus 158 LG~tle~I--a~eKa~-I~k~~~~~v~~~~~~~~~~~~i~~~a~~~~~-~~~~~~---~~--~~~---~~~~~--~~~~~ 223 (429) T Consensus 196 Y~~~~E~~~~aF~~F~~~l~~~G~~v~c~D-D~~~~~l~-~~~~~~r~d~~~~y~~~~~~~~~~~~~~~~~~~~~~f~v~ 273 (491) T TIGR01082 196 YGSSLERLKAAFEKFIHNLPFYGLAVICAD-DPVLRKLV-PKATESRKDVVITYGGSGEDADIRAENIQQSGAEFEFSVR 273 (491) T ss_pred CCCCHHHHHHHHHHHHHHCCCCCEEEEECC-CHHHHHHH-HHHHHCCCEEEEECCCCCCCCEEEEEEEEECCCEEEEEEE T ss_conf 645789999999999982788879999838-65478776-3555338704786687776414778874322645899999 Q ss_pred ECCCC-------CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC-------HHHHCCCCCCCCCCCC-CEEEEECCCCCCC Q ss_conf 10333-------3444444322221111146999987532000-------0110011222233665-3035422875444 Q gi|254780821|r 224 DKISQ-------TNLTVLGLVGEHQYINAATAICAVQMAGFTL-------EKECINAALQSVQWFG-RLQKITEGPLLNK 288 (429) Q Consensus 224 ~~~~~-------~~~~~l~l~G~hn~~Na~~Aiaa~~~lg~~i-------~~~~I~~gL~~~~~pG-R~e~i~~~~~~~~ 288 (429) T Consensus 274 ~~~~~~~~~~~G~~~~~~~~pG~HNvLNAlAA~ava~~~g~~~~G~~~~~~~~~I~~~L~~F~G~~RRf~~~g~~~~~~- 352 (491) T TIGR01082 274 LKGKLGEATTEGPLEFKLNLPGRHNVLNALAAIAVALELGLDFYGKVIVDFLEAIKRALANFQGVKRRFEILGECNGGN- 352 (491) T ss_pred ECCCCCCCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHCCCCCCHHHHHHHHCCCCC- T ss_conf 7045220111002799980387200678999998888722123685564158999999850689731012010027898- Q ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCCEEEEEC---CCCCCC-HHHHHHHHHHHCCEEEEEEECCCCCCCCC Q ss_conf 57874599933632157998886543311477771243113---467989-89999988863888999842288998421 Q gi|254780821|r 289 LPDHSEVWIDGGHNPNAGLVVSKEISKLKGSSNKPFYLVIG---MVEGKK-YGRYLEAFVELSPIVLSVSLICRGRERQS 364 (429) Q Consensus 289 ~~~~~~viiD~AHNp~s~~~l~~~l~~l~~~~~~~i~~I~G---~~~dKd-~~~~l~~l~~~~d~i~~~~~~~~~~~~~~ 364 (429) T Consensus 353 n~g~~~~~DDYAHHPtEi~aTl~aAr~~~~~k~~r~v~~FQPHrYsRT~~~~~~F~~~L~~haD~l~~~diY~A~E~~~- 431 (491) T TIGR01082 353 NNGTVLLIDDYAHHPTEIKATLAAARQVYPDKNRRIVVVFQPHRYSRTKDLFDDFAKVLSDHADELILLDIYAAGEEPI- 431 (491) T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCC- T ss_conf 7527999965899978999999999875211795799997498567899889999999973089999815321136776- Q ss_pred CCCCHHHHHHHHHHCC--CCEEEECCHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHH Q ss_conf 2789899999998549--978996998999999998603588679999497799999999 Q gi|254780821|r 365 ISITPKVLMQEAKKLG--FQAMACSSMIEALSRVRKINEELPPPLILIAGSLYLAGEALR 422 (429) Q Consensus 365 ~~~~~~~l~~~~~~~~--~~~~~~~~~~eAi~~a~~~~~~~~~d~VLV~GS~ylvge~l~ 422 (429) T Consensus 432 ~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~l~~~~--~~GD~~~~~G----AG~~~~ 485 (491) T TIGR01082 432 AGIDGKSLARKITQKKGKEEPYFVPDLAEVVEFLAEVL--QSGDLILTMG----AGDVSK 485 (491) T ss_pred CCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHC--CCCCEEEEEC----CCCHHH T ss_conf 78778999999862578777610421778999999971--6998999960----552010 |
The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) , MurD (6.3.2.9 from EC) , MurE (6.3.2.13 from EC) and MurF (6.3.2.10 from EC) . These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales . This entry represents UDP-N-acetylmuramate-alanine ligase (MurC). MurC is an essential, cytoplasmic peptidoglycan biosynthetic enzyme, catalyzes the ATP-dependent ligation of L-alanine (Ala) and UDP-N-acetylmuramic acid (UNAM) to form UDP-N-acetylmuramyl-L-alanine (UNAM-Ala). The enzyme is a nonribosomal peptide ligase which utilises ATP to form an amide bond between L-alanine and UNAM.1 Mechanistic studies on the Escherichia coli MurC enzyme using oxygen isotope analyses demonstrated that the enzyme-catalyzed reaction proceeds through an acyl phosphate UNAM intermediate prior to L-alanine addition.; GO: 0005524 ATP binding, 0008763 UDP-N-acetylmuramate-L-alanine ligase activity, 0008360 regulation of cell shape, 0009252 peptidoglycan biosynthetic process, 0009273 peptidoglycan-based cell wall biogenesis, 0051301 cell division, 0005737 cytoplasm. |
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
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Probab=100.00 E-value=2e-40 Score=268.91 Aligned_cols=305 Identities=16% Similarity=0.201 Sum_probs=195.8 Q ss_pred CCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEECCCCCCCEECCHHHHHHHHHHHHHCCCCCCCCH Q ss_conf 98399945898479999999999997893514137841101200898884778715588999999999863047767795 Q gi|254780821|r 24 PPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNERFRLGVKGGRGRLVEDVELLDVFRRVRRVKSAQNLTI 103 (429) Q Consensus 24 ~~vI~VtGTnGKttt~~~i~~il~~~g~k~g~~tSPhl~~~~Eri~i~~~~~~g~~i~~~~~~~~~~~i~~~~~~~~~t~ 103 (429) T Consensus 122 ~~~IaVTGTnGKTTTtsli~~iL~~~g~~~~~--------------~GNI---G~p~l~~--------~----------- 165 (481) T PRK01438 122 APWLAVTGTNGKTTTVQMLASILRAAGLRAAA--------------VGNI---GVPVLDA--------V----------- 165 (481) T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHCCCCEEE--------------EEEC---CHHHHHH--------H----------- T ss_conf 87899938997460999999999966997079--------------9625---6777764--------2----------- Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHCCCCCCCHHHHHHHHHHHCCCCCC-CCCC Q ss_conf 789999999874114462477764447567641356775158986025000000278523445666531137983-3154 Q gi|254780821|r 104 FELSIATALVLFSKYPADCAIIEVGLGGSLDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGIIKPGCP-VVIG 182 (429) Q Consensus 104 FE~lt~~a~~~f~~~~~d~~vlE~GlGGr~DaTnvi~~~~vavITnI~~DHle~LG~tle~Ia~eKa~I~k~~~~-~v~~ 182 (429) T Consensus 166 -----------~~~~~~d~~V~ElSS-fqL~~~~~~-~p~iavitNIs~DHLD~h~-s~e~Y~~aK~~If~~~~~~~v~n 231 (481) T PRK01438 166 -----------RGPDGYDVLAVELSS-FQLHWAPSV-RPHSAAVLNLAPDHLDWHG-SMEAYAADKGRVYEGNTVACVYN 231 (481) T ss_pred -----------CCCCCCCEEEEECCC-CCCCCCCCC-CCCEEEEECCCHHHHHHHC-CHHHHHHHHHHHHCCCCEEEEEE T ss_conf -----------288886089998047-651334455-7648997068777866523-59899999999862785149970 Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCCCCCCCC-----CCCCC---CEEEEEEC----CCCCCCCCCCCCCCCCCCCHHHHHH Q ss_conf 447178988999986210566523576321-----01258---52444310----3333444444322221111146999 Q gi|254780821|r 183 HQVYDEVREILVSKAEKMGCPYNVYGDDFY-----AFEKN---KCLVYQDK----ISQTNLTVLGLVGEHQYINAATAIC 250 (429) Q Consensus 183 ~~~~~~~~~~i~~~a~~~~~~~~~~~~~~~-----~~~~~---~~~~~~~~----~~~~~~~~l~l~G~hn~~Na~~Aia 250 (429) T Consensus 232 ~-dD~~~~~l~~~~~~~~~~~~i~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~HN~~NalAA~a 310 (481) T PRK01438 232 V-ADPATEDLVREADVVEGARAIGFTLGTPGPSDLGIVDGILVDRAFVEDRFTSAQELATLSDVGPAAPHNVANALAAAA 310 (481) T ss_pred C-CCHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCEECCEEEECEEEEECCCCCCCCCCHHHCCCCCHHHHHHHHHHHH T ss_conf 5-778899999860224477078873588871201210345530203430234530001066406765769999999999 Q ss_pred HHHHHHHCCHHHHCCCCCCCCC-CCCCEEEEECCCCCCCCCCCCEEEEEC-CCCHHHHHHHHHHHHHHCCCCCCCEEEEE Q ss_conf 9875320000110011222233-665303542287544457874599933-63215799888654331147777124311 Q gi|254780821|r 251 AVQMAGFTLEKECINAALQSVQ-WFGRLQKITEGPLLNKLPDHSEVWIDG-GHNPNAGLVVSKEISKLKGSSNKPFYLVI 328 (429) Q Consensus 251 a~~~lg~~i~~~~I~~gL~~~~-~pGR~e~i~~~~~~~~~~~~~~viiD~-AHNp~s~~~l~~~l~~l~~~~~~~i~~I~ 328 (429) T Consensus 311 ~a~~lG--i~~~~i~~aL~~F~Gl~hR~E~v~~-------~~GV~fiNDSKaTN~~A~~~AL~~~--------~~i~lI~ 373 (481) T PRK01438 311 LARAFG--VSPAAVRDGLRAFRPDAHRIEHVAD-------ADGVTYVDDSKATNPHAAEASLAAY--------PSVVWIA 373 (481) T ss_pred HHHHCC--CCHHHHHHHHHHCCCCCCEEEEEEE-------ECCEEEECCCCCCCHHHHHHHHHHC--------CCEEEEE T ss_conf 999829--9889999888634897733789999-------9999998068878988999998724--------9889993 Q ss_pred CC-CCCCCHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCC--EE-----EECCHHHHHHHHHHHC Q ss_conf 34-6798989999988863888999842288998421278989999999854997--89-----9699899999999860 Q gi|254780821|r 329 GM-VEGKKYGRYLEAFVELSPIVLSVSLICRGRERQSISITPKVLMQEAKKLGFQ--AM-----ACSSMIEALSRVRKIN 400 (429) Q Consensus 329 G~-~~dKd~~~~l~~l~~~~d~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~-----~~~~~~eAi~~a~~~~ 400 (429) T Consensus 374 GG~~Kg~d~~~l~~~~~~~vk~~~l~------------G~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~av~~a~~~a 441 (481) T PRK01438 374 GGLAKGAHFDDLVRAHAARLRGVVLI------------GADRALIREALARHAPDVPVVDVDRTDTEAMARAVRLAARLA 441 (481) T ss_pred CCCCCCCCHHHHHHHHHHHCEEEEEE------------CCCHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHC T ss_conf 78657889899999986013399997------------789999999997228987457731023789999999999638 Q ss_pred CCCCCCEEEE Q ss_conf 3588679999 Q gi|254780821|r 401 EELPPPLILI 410 (429) Q Consensus 401 ~~~~~d~VLV 410 (429) T Consensus 442 --~~gd~VLl 449 (481) T PRK01438 442 --RPGDTVLL 449 (481) T ss_pred --CCCCEEEE T ss_conf --99898998 |
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>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
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Probab=100.00 E-value=3.6e-40 Score=267.33 Aligned_cols=298 Identities=17% Similarity=0.215 Sum_probs=192.0 Q ss_pred CEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEECCCCCCCEECCHHHHHHHHHHHHHCCCCCCCCHH Q ss_conf 83999458984799999999999978935141378411012008988847787155889999999998630477677957 Q gi|254780821|r 25 PVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNERFRLGVKGGRGRLVEDVELLDVFRRVRRVKSAQNLTIF 104 (429) Q Consensus 25 ~vI~VtGTnGKttt~~~i~~il~~~g~k~g~~tSPhl~~~~Eri~i~~~~~~g~~i~~~~~~~~~~~i~~~~~~~~~t~F 104 (429) T Consensus 118 ~~IaVTGTnGKTTTtsmi~~iL~~~g~~~~---------------~gGNi--G~p~~--------~~~~----------- 161 (458) T PRK01710 118 KVFGITGSDGKTTTTTLIYEMLKEEGYKTW---------------VGGNI--GTPLF--------SNIE----------- 161 (458) T ss_pred CEEEEECCCCCHHHHHHHHHHHHHCCCCEE---------------EECCC--CCHHH--------HHHH----------- T ss_conf 779993689847899999999998499758---------------51662--64468--------8885----------- Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHCCCCCCCHHHHHHHHHHHCC---CCCCCCC Q ss_conf 8999999987411446247776444756764135677515898602500000027852344566653113---7983315 Q gi|254780821|r 105 ELSIATALVLFSKYPADCAIIEVGLGGSLDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGIIK---PGCPVVI 181 (429) Q Consensus 105 E~lt~~a~~~f~~~~~d~~vlE~GlGGr~DaTnvi~~~~vavITnI~~DHle~LG~tle~Ia~eKa~I~k---~~~~~v~ 181 (429) T Consensus 162 -----------~~~~~d~~V~E~SS~-ql~~~~--~~P~iaVitNi~~DHLD~h~-s~e~Y~~aK~~i~~~~~~~~~~i~ 226 (458) T PRK01710 162 -----------EIKEEDKVVLELSSF-QLMTMD--VSPEVAVVTNLSPNHLDVHK-DMEEYVDAKKNIFKYQSSNDLLVL 226 (458) T ss_pred -----------HCCCCCEEEEEECHH-HHHHCC--CCCCEEEEECCCHHHHHHHH-HHHHHHHHHHHHHHCCCCCCEEEE T ss_conf -----------057886699993215-553054--68878998358853650654-199999999999963887737999 Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCC----CCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH Q ss_conf 4447178988999986210566523576321----012585244431033334444443222211111469999875320 Q gi|254780821|r 182 GHQVYDEVREILVSKAEKMGCPYNVYGDDFY----AFEKNKCLVYQDKISQTNLTVLGLVGEHQYINAATAICAVQMAGF 257 (429) Q Consensus 182 ~~~~~~~~~~~i~~~a~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~~Aiaa~~~lg~ 257 (429) T Consensus 227 n~D-d~~~~~~----~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~l~G~HN~~N~lAA~aa~~-~g- 298 (458) T PRK01710 227 NKD-NEITNGM----EKEAKGDVVKFSRKEKLKEGAYYKDGKLYIRGK-EVCKKDDIKLKGMHNVENLLAAFCAVN-DD- 298 (458) T ss_pred ECC-CHHHHHH----HHHCCCCEEEECCCCCCCCCCEEECCEEEECCC-EECCHHHCCCCCHHHHHHHHHHHHHHH-CC- T ss_conf 378-6999998----776368789953665456673676688998784-011324216776544999999999998-19- Q ss_pred CCHHHHCCCCCCCCC-CCCCEEEEECCCCCCCCCCCCEEEEEC-CCCHHHHHHHHHHHHHHCCCCCCCEEEEECC-CCCC Q ss_conf 000110011222233-665303542287544457874599933-6321579988865433114777712431134-6798 Q gi|254780821|r 258 TLEKECINAALQSVQ-WFGRLQKITEGPLLNKLPDHSEVWIDG-GHNPNAGLVVSKEISKLKGSSNKPFYLVIGM-VEGK 334 (429) Q Consensus 258 ~i~~~~I~~gL~~~~-~pGR~e~i~~~~~~~~~~~~~~viiD~-AHNp~s~~~l~~~l~~l~~~~~~~i~~I~G~-~~dK 334 (429) T Consensus 299 -i~~e~i~~aL~~F~Gl~hR~E~v~~-------~~gv~~iNDSkaTn~~s~~~AL~~~~-------~~iilI~GG~~K~~ 363 (458) T PRK01710 299 -VSIESMKKVATTFTGVEHRCEFVRE-------INGVKYYNDSIASSPTRTLAGLNAFE-------KPVILIAGGYDKKI 363 (458) T ss_pred -CCHHHHHHHHHHCCCHHHHHEEEEE-------ECCEEEEECCCCCCHHHHHHHHHCCC-------CCEEEEECCCCCCC T ss_conf -9999999998754353423146578-------74767981576689899999997167-------77299964656678 Q ss_pred CHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHH----HH--CCCCEEEECCHHHHHHHHHHHCCCCCCCEE Q ss_conf 989999988863888999842288998421278989999999----85--499789969989999999986035886799 Q gi|254780821|r 335 KYGRYLEAFVELSPIVLSVSLICRGRERQSISITPKVLMQEA----KK--LGFQAMACSSMIEALSRVRKINEELPPPLI 408 (429) Q Consensus 335 d~~~~l~~l~~~~d~i~~~~~~~~~~~~~~~~~~~~~l~~~~----~~--~~~~~~~~~~~~eAi~~a~~~~~~~~~d~V 408 (429) T Consensus 364 d~~~l~~~~~~~~k~vi~---~G~---------~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~Av~~a~~~a--~~gd~V 429 (458) T PRK01710 364 PFEPLAEEGYEKIKILIL---MGD---------TKNKIKEAFKKVEEEKGIKIPIVIVNSLEEAVKVAKNIA--EKGDII 429 (458) T ss_pred CHHHHHHHHHHHCCEEEE---ECC---------CHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHC--CCCCEE T ss_conf 869999987630529999---788---------779999999876663168865233735999999999758--897989 Q ss_pred EE Q ss_conf 99 Q gi|254780821|r 409 LI 410 (429) Q Consensus 409 LV 410 (429) T Consensus 430 Ll 431 (458) T PRK01710 430 TL 431 (458) T ss_pred EE T ss_conf 98 |
|
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
---|
Probab=100.00 E-value=1.1e-40 Score=270.61 Aligned_cols=310 Identities=19% Similarity=0.254 Sum_probs=203.0 Q ss_pred CCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEECCCCCCCEECCHHHHHHHHHHHHHCCCCCCCCH Q ss_conf 98399945898479999999999997893514137841101200898884778715588999999999863047767795 Q gi|254780821|r 24 PPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNERFRLGVKGGRGRLVEDVELLDVFRRVRRVKSAQNLTI 103 (429) Q Consensus 24 ~~vI~VtGTnGKttt~~~i~~il~~~g~k~g~~tSPhl~~~~Eri~i~~~~~~g~~i~~~~~~~~~~~i~~~~~~~~~t~ 103 (429) T Consensus 108 ~~iIaVTGTnGKTTTtsli~~iL~~~g~~~~~---------------gGNi--G~p~~~--------------------- 149 (438) T PRK04663 108 KPVIAITGSNGKSTVTDLTGVMAKAAGVKVAV---------------GGNI--GVPALD--------------------- 149 (438) T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHCCCCCEE---------------EEEC--CCHHHH--------------------- T ss_conf 97899948998289999999999828997068---------------7215--716887--------------------- Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCC Q ss_conf 78999999987411446247776444756764135677515898602500000027852344566653113798331544 Q gi|254780821|r 104 FELSIATALVLFSKYPADCAIIEVGLGGSLDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGIIKPGCPVVIGH 183 (429) Q Consensus 104 FE~lt~~a~~~f~~~~~d~~vlE~GlGGr~DaTnvi~~~~vavITnI~~DHle~LG~tle~Ia~eKa~I~k~~~~~v~~~ 183 (429) T Consensus 150 -----------~~~~~~d~~VlElSS-fQLe~~~~~-~p~iavilNIs~DHLD~h~-s~e~Y~~aK~rIf~~~~~~Ivn~ 215 (438) T PRK04663 150 -----------LLEQDAELYVLELSS-FQLETTSSL-KLKAAAFLNLSEDHMDRYQ-GMADYRQAKLRIFDHAELAVVNR 215 (438) T ss_pred -----------HHHCCCCEEEEECCC-CCHHHHCCC-CCCCHHHHCCCHHHHHHHC-CHHHHHHHHHHHHCCCCEEEECC T ss_conf -----------530469789984451-014340356-8633344068876877736-99999999999853697899865 Q ss_pred CCCHHHHHHHHHHHHHCCCCCCCCCC---CCCCCCC-CCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC Q ss_conf 47178988999986210566523576---3210125-8524443103333444444322221111146999987532000 Q gi|254780821|r 184 QVYDEVREILVSKAEKMGCPYNVYGD---DFYAFEK-NKCLVYQDKISQTNLTVLGLVGEHQYINAATAICAVQMAGFTL 259 (429) Q Consensus 184 ~~~~~~~~~i~~~a~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~~Aiaa~~~lg~~i 259 (429) T Consensus 216 dd-~~~---~~~~---~~~~~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~HN~~NalaA~a~a~~lG--i 286 (438) T PRK04663 216 DD-KQT---YPDT---ASLQLVTFGFDQQEYGLIEHQGREWLADNGQPVLASNELKLVGKHNVANSLVVLALLDAAG--I 286 (438) T ss_pred CH-HHH---HHHH---CCCCEEEEECCCCCCCEEEECCEEEEEECCEEEEEHHHHCCCCHHHHHHHHHHHHHHHHCC--C T ss_conf 35-988---8776---0785799604620165597278699985887766314305664556877999999999839--9 Q ss_pred HHHHCCCCCCCCC-CCCCEEEEECCCCCCCCCCCCEEEEEC-CCCHHHHHHHHHHHHHHCCCCCCCEEEEECCC-CCCCH Q ss_conf 0110011222233-665303542287544457874599933-63215799888654331147777124311346-79898 Q gi|254780821|r 260 EKECINAALQSVQ-WFGRLQKITEGPLLNKLPDHSEVWIDG-GHNPNAGLVVSKEISKLKGSSNKPFYLVIGMV-EGKKY 336 (429) Q Consensus 260 ~~~~I~~gL~~~~-~pGR~e~i~~~~~~~~~~~~~~viiD~-AHNp~s~~~l~~~l~~l~~~~~~~i~~I~G~~-~dKd~ 336 (429) T Consensus 287 ~~e~I~~aL~~F~glpHRlE~v~~-------~~gv~~iNDSKaTN~~a~~~Al~~~~~-----~~~i~lI~GG~~Kg~d~ 354 (438) T PRK04663 287 DYRKTLDALKSYNGLTHRCQVVAD-------NRGIKWVNDSKATNVASTLAALSGLNL-----EGKLYLLVGGVGKGADF 354 (438) T ss_pred CHHHHHHHHHCCCCCCCCEEEEEE-------ECCEEEECCCCCCCHHHHHHHHHHCCC-----CCCEEEEECCCCCCCCH T ss_conf 978986565335898875289999-------899999747877887899999983677-----78479996576666687 Q ss_pred HHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHCCCCCCCEEEE---ECC Q ss_conf 99999888638889998422889984212789899999998549978996998999999998603588679999---497 Q gi|254780821|r 337 GRYLEAFVELSPIVLSVSLICRGRERQSISITPKVLMQEAKKLGFQAMACSSMIEALSRVRKINEELPPPLILI---AGS 413 (429) Q Consensus 337 ~~~l~~l~~~~d~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~eAi~~a~~~~~~~~~d~VLV---~GS 413 (429) T Consensus 355 ~~l~~~~~~~~~~~~~---~G~---------~~~~~~~----~~~~~~~~~~l~~Av~~a~~~a--~~gd~vLlSPacaS 416 (438) T PRK04663 355 SELKPVLATLNLQLCC---FGE---------DGDQFMP----LHPSARRFETMEDAIESISPQL--KSGDMVMLSPACAS 416 (438) T ss_pred HHHHHHHHHCCEEEEE---ECC---------CHHHHHH----HCCCCEECCCHHHHHHHHHHHC--CCCCEEEECCCCCC T ss_conf 9999998523769999---888---------8999974----3245344067999999999867--79998998974403 Q ss_pred H------HHHHHHHHHC Q ss_conf 7------9999999987 Q gi|254780821|r 414 L------YLAGEALREN 424 (429) Q Consensus 414 ~------ylvge~l~~~ 424 (429) T Consensus 417 fD~F~nyeeRG~~F~~l 433 (438) T PRK04663 417 FDQFANFMARGDAFAEL 433 (438) T ss_pred CCCCCCHHHHHHHHHHH T ss_conf 00306999999999999 |
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>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
---|
Probab=100.00 E-value=4.6e-40 Score=266.65 Aligned_cols=301 Identities=19% Similarity=0.195 Sum_probs=187.1 Q ss_pred CCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEECCCCCCCEECCHHHHHHHHHHHHHCCCCCCCCH Q ss_conf 98399945898479999999999997893514137841101200898884778715588999999999863047767795 Q gi|254780821|r 24 PPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNERFRLGVKGGRGRLVEDVELLDVFRRVRRVKSAQNLTI 103 (429) Q Consensus 24 ~~vI~VtGTnGKttt~~~i~~il~~~g~k~g~~tSPhl~~~~Eri~i~~~~~~g~~i~~~~~~~~~~~i~~~~~~~~~t~ 103 (429) T Consensus 117 ~~~IaVTGTnGKTTttsli~~iL~~~g~~~~~--------------~GNi---G~p~~~--------------------- 158 (487) T PRK03369 117 RRWLVVTGTNGKTTTTSMLHAMLRAAGRRSVL--------------CGNI---GSPVLD--------------------- 158 (487) T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHCCCCEEE--------------EECC---CHHHHH--------------------- T ss_conf 65599979887278999999999858998599--------------8136---657664--------------------- Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCC Q ss_conf 78999999987411446247776444756764135677515898602500000027852344566653113798331544 Q gi|254780821|r 104 FELSIATALVLFSKYPADCAIIEVGLGGSLDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGIIKPGCPVVIGH 183 (429) Q Consensus 104 FE~lt~~a~~~f~~~~~d~~vlE~GlGGr~DaTnvi~~~~vavITnI~~DHle~LG~tle~Ia~eKa~I~k~~~~~v~~~ 183 (429) T Consensus 159 -----------~~~~~~~~~V~ElSS-fql~~~~~~-~p~iaVitNI~~DHLD~h~-s~e~Y~~aK~ri~~~-~~~v~n~ 223 (487) T PRK03369 159 -----------VLDEPAELLAVELSS-FQLHWAPSL-RPEAGAVLNIAEDHLDWHG-TMAAYAAAKARALTG-RVAVAGL 223 (487) T ss_pred -----------HCCCCCCEEEEEECC-CCCCCCCCC-CCCEEEECCCCHHHHHHCC-CHHHHHHHHHHHHCC-CEEEEEC T ss_conf -----------124788589998136-543446666-8547885278877875428-999999997557339-8799968 Q ss_pred CCCHHHHHHHHHHHHHCCCCCCCCCC--CCCCCCCCCEEEE---EECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC Q ss_conf 47178988999986210566523576--3210125852444---310333344444432222111114699998753200 Q gi|254780821|r 184 QVYDEVREILVSKAEKMGCPYNVYGD--DFYAFEKNKCLVY---QDKISQTNLTVLGLVGEHQYINAATAICAVQMAGFT 258 (429) Q Consensus 184 ~~~~~~~~~i~~~a~~~~~~~~~~~~--~~~~~~~~~~~~~---~~~~~~~~~~~l~l~G~hn~~Na~~Aiaa~~~lg~~ 258 (429) T Consensus 224 D-D~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~HNv~NalAA~a~a~~lG-- 299 (487) T PRK03369 224 D-DSRAAALLDTAPAPVRVG-FRLGEPAAGELGVRDGHLVDRAFADDLTLAPVDSIPVPGPVGVLDALAAAALARAVG-- 299 (487) T ss_pred C-CHHHHHHHHHCCCCEEEE-EECCCCCCCCEEEECCEEEEEECCCCCEEEEHHHCCCCCHHHHHHHHHHHHHHHHCC-- T ss_conf 7-688999974278767996-532787644212653689984136773672466458863536998999999999849-- Q ss_pred CHHHHCCCCCCCCC-CCCCEEEEECCCCCCCCCCCCEEEEEC-CCCHHHHHHHHHHHHHHCCCCCCCEEEEECC-CCCCC Q ss_conf 00110011222233-665303542287544457874599933-6321579988865433114777712431134-67989 Q gi|254780821|r 259 LEKECINAALQSVQ-WFGRLQKITEGPLLNKLPDHSEVWIDG-GHNPNAGLVVSKEISKLKGSSNKPFYLVIGM-VEGKK 335 (429) Q Consensus 259 i~~~~I~~gL~~~~-~pGR~e~i~~~~~~~~~~~~~~viiD~-AHNp~s~~~l~~~l~~l~~~~~~~i~~I~G~-~~dKd 335 (429) T Consensus 300 i~~~~i~~aL~~F~glphR~E~v~~-------~~Gv~fiNDSKaTn~~a~~~Al~s~------~--~iilI~GG~~Kg~~ 364 (487) T PRK03369 300 VPAGAIADALASFRVGRHRAEVVAV-------ADGITYVDDSKATNPHAARASILAY------P--RVVWIAGGLLKGAS 364 (487) T ss_pred CCHHHHHHHHHHCCCCCCCEEEEEE-------ECCEEEEECCCCCCHHHHHHHHHHC------C--CEEEECCCCCCCCC T ss_conf 9999999999857999985289999-------9999998257668988999998615------5--50896155436777 Q ss_pred HHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCC---------------------------------C Q ss_conf 8999998886388899984228899842127898999999985499---------------------------------7 Q gi|254780821|r 336 YGRYLEAFVELSPIVLSVSLICRGRERQSISITPKVLMQEAKKLGF---------------------------------Q 382 (429) Q Consensus 336 ~~~~l~~l~~~~d~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------------------------------~ 382 (429) T Consensus 365 ~~~L~~~~~~~v~~v~---l~G~d---------~~~i~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 432 (487) T PRK03369 365 VDALVAEMASRLVGAV---LIGRD---------RAVVAEALSRHAPDVPVVEVVTGEDAGMPATPEACVLDVTKVDDAGG 432 (487) T ss_pred HHHHHHHHHHHEEEEE---EECCC---------HHHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCC T ss_conf 0778999975425999---97888---------89999999742776652133113222210013454433332100112 Q ss_pred EEEECCHHHHHHHHHHHCCCCCCCEEEE Q ss_conf 8996998999999998603588679999 Q gi|254780821|r 383 AMACSSMIEALSRVRKINEELPPPLILI 410 (429) Q Consensus 383 ~~~~~~~~eAi~~a~~~~~~~~~d~VLV 410 (429) T Consensus 433 ~~~~~~l~~AV~~A~~~a--~~GdvVLL 458 (487) T PRK03369 433 TLGDAVMTAAVAAARGLA--RPGDTVLL 458 (487) T ss_pred CHHHHHHHHHHHHHHHHC--CCCCEEEE T ss_conf 035779999999999748--99998997 |
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>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
---|
Probab=100.00 E-value=2.4e-39 Score=262.29 Aligned_cols=311 Identities=16% Similarity=0.213 Sum_probs=197.4 Q ss_pred CHHHHCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEECCCCCCCEECCHHHHHHHHHHHHHCCC Q ss_conf 95883598399945898479999999999997893514137841101200898884778715588999999999863047 Q gi|254780821|r 18 RPQDRLPPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNERFRLGVKGGRGRLVEDVELLDVFRRVRRVKS 97 (429) Q Consensus 18 ~P~~~~~~vI~VtGTnGKttt~~~i~~il~~~g~k~g~~tSPhl~~~~Eri~i~~~~~~g~~i~~~~~~~~~~~i~~~~~ 97 (429) T Consensus 109 ~~~~~~~k~IaVTGTNGKTTTt~ll~~iL~~~g~~~~~---------------~GNI--G~P~~~~--------~~---- 159 (468) T PRK04690 109 QPDGSVPGAVCVTGTKGKSTTTALLAHLLRAAGHRTAL---------------VGNI--GQPLLEV--------LA---- 159 (468) T ss_pred CCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEE---------------ECCC--CHHHHHH--------HC---- T ss_conf 11256787899969985899999999999857998289---------------8677--6446765--------32---- Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHCCCCCCCHHHHHHHHHHHCCCCC Q ss_conf 76779578999999987411446247776444756764135677515898602500000027852344566653113798 Q gi|254780821|r 98 AQNLTIFELSIATALVLFSKYPADCAIIEVGLGGSLDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGIIKPGC 177 (429) Q Consensus 98 ~~~~t~FE~lt~~a~~~f~~~~~d~~vlE~GlGGr~DaTnvi~~~~vavITnI~~DHle~LG~tle~Ia~eKa~I~k~~~ 177 (429) T Consensus 160 ------------------~~~~~d~~VlElSSfQLe~~~~~~~~p~iavilNispDHLDrHg-s~e~Y~~aK~~If~~~~ 220 (468) T PRK04690 160 ------------------PQPAPAYWAIELSSYQTGDVGRSGARPELAVVLNLFPEHLDWHG-GEARYVRDKLSLVTEGR 220 (468) T ss_pred ------------------CCCCCCEEEEEECCCHHHHHHHCCCCCCEEEEECCCHHHHHHCC-CHHHHHHHHHHHHHCCC T ss_conf ------------------47888579999432057654531478778753048887874608-99999999999996579 Q ss_pred C--CCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH Q ss_conf 3--31544471789889999862105665235763210125852444310333344444432222111114699998753 Q gi|254780821|r 178 P--VVIGHQVYDEVREILVSKAEKMGCPYNVYGDDFYAFEKNKCLVYQDKISQTNLTVLGLVGEHQYINAATAICAVQMA 255 (429) Q Consensus 178 ~--~v~~~~~~~~~~~~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~~Aiaa~~~l 255 (429) T Consensus 221 ~~~~vin~~-D~~~~~~-----~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~L~G~HN~~NalAA~a~a~~l 293 (468) T PRK04690 221 PRIALLNAA-DPRLAAL-----QLPDSEVRWFNHPDGWHVRG-DVVYRGEQAIFDTANVPLPGRHNRGNLCAVLAALEAL 293 (468) T ss_pred CCEEEEECC-CHHHHHH-----HCCCCCEEEECCCCCEEECC-CEEEECCCCEECCCCCCCCCCCHHHHHHHHHHHHHHH T ss_conf 977999788-8899975-----25778469951777537606-6788356201111236777700487699999999983 Q ss_pred HHCCHHHHCCCCCCCCC-CCCCEEEEECCCCCCCCCCCCEEEEEC-CCCHHHHHHHHHHHHHHCCCCCCCEEEEECC-CC Q ss_conf 20000110011222233-665303542287544457874599933-6321579988865433114777712431134-67 Q gi|254780821|r 256 GFTLEKECINAALQSVQ-WFGRLQKITEGPLLNKLPDHSEVWIDG-GHNPNAGLVVSKEISKLKGSSNKPFYLVIGM-VE 332 (429) Q Consensus 256 g~~i~~~~I~~gL~~~~-~pGR~e~i~~~~~~~~~~~~~~viiD~-AHNp~s~~~l~~~l~~l~~~~~~~i~~I~G~-~~ 332 (429) T Consensus 294 G--v~~~~I~~aL~sF~glpHRlE~v~~-------~~gv~fiNDSKATN~~a~~~AL~~f------~~~~iilI~GG~~K 358 (468) T PRK04690 294 G--LDAAALAPAAASFRPLPNRLQELGS-------VDGITYVNDSISTTPHASLAALDCF------AGRRVALLVGGHDR 358 (468) T ss_pred C--CCHHHHHHHHHHCCCCCCCEEEEEE-------ECCEEEECCCCCCCHHHHHHHHHHC------CCCCEEEEECCCCC T ss_conf 8--9889999987426799975279999-------8999997378778989999999727------66857999736766 Q ss_pred CCCHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHH----CCCCEEEECCHHHHHHHHHHHCCCCCCCEE Q ss_conf 9898999998886388899984228899842127898999999985----499789969989999999986035886799 Q gi|254780821|r 333 GKKYGRYLEAFVELSPIVLSVSLICRGRERQSISITPKVLMQEAKK----LGFQAMACSSMIEALSRVRKINEELPPPLI 408 (429) Q Consensus 333 dKd~~~~l~~l~~~~d~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~eAi~~a~~~~~~~~~d~V 408 (429) T Consensus 359 g~d~~~l~~~~~~~~~~~vi--~~G---------~~~~~i~~~~~~~~~~~~~~~~~~~~l~~Av~~a~~~~-~~~gd~V 426 (468) T PRK04690 359 GLDWTDFAAHMAQQAPLEIV--TMG---------ANGPRIHALLAPLADAGRFGLHAADDLPHAMALARTAL-GAQGGVV 426 (468) T ss_pred CCCHHHHHHHHHHCCCEEEE--EEC---------CCHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHC-CCCCCEE T ss_conf 77879999998633768999--974---------78899999975234456310254067999999999960-5899989 Q ss_pred EE Q ss_conf 99 Q gi|254780821|r 409 LI 410 (429) Q Consensus 409 LV 410 (429) T Consensus 427 LL 428 (468) T PRK04690 427 LL 428 (468) T ss_pred EE T ss_conf 97 |
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>COG0770 MurF UDP-N-acetylmuramyl pentapeptide synthase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
---|
Probab=100.00 E-value=2.2e-39 Score=262.44 Aligned_cols=331 Identities=23% Similarity=0.278 Sum_probs=211.4 Q ss_pred CCCHHHHHHHHHHC-CCHHHHCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEECCCCCCCEECC Q ss_conf 78889999999872-99588359839994589847999999999999789351413784110120089888477871558 Q gi|254780821|r 3 ADSLLKMGYLLEDL-GRPQDRLPPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNERFRLGVKGGRGRLVE 81 (429) Q Consensus 3 ~~~l~r~~~ll~~l-g~P~~~~~~vI~VtGTnGKttt~~~i~~il~~~g~k~g~~tSPhl~~~~Eri~i~~~~~~g~~i~ 81 (429) T Consensus 84 ~d~~~al~~la~~~~~~~--~~-kvIaITGS~GKTTTKe~la~iL~~~~~-v--~~t~gn~--------N-----n~-i- 142 (451) T COG0770 84 LDTLEALGKLAKAYRQKF--NA-KVIAITGSNGKTTTKEMLAAILSTKGK-V--HATPGNF--------N-----NE-I- 142 (451) T ss_pred HHHHHHHHHHHHHHHHHC--CC-CEEEEECCCCCHHHHHHHHHHHHHCCE-E--ECCCCCC--------C-----CC-C- T ss_conf 999999999999999736--99-689995899707699999999863680-7--4678766--------8-----65-4- Q ss_pred HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHH--HHHHHHCCCCCCCEEEEEECCCHHCCCCC Q ss_conf 8999999999863047767795789999999874114462477764447--56764135677515898602500000027 Q gi|254780821|r 82 DVELLDVFRRVRRVKSAQNLTIFELSIATALVLFSKYPADCAIIEVGLG--GSLDATNIIEKVAVSVITSISLDHEKILG 159 (429) Q Consensus 82 ~~~~~~~~~~i~~~~~~~~~t~FE~lt~~a~~~f~~~~~d~~vlE~GlG--Gr~DaTnvi~~~~vavITnI~~DHle~LG 159 (429) T Consensus 143 ----------------GlPltl------l----~~~~~~e~~VlEmG~~~~GeI~~l~~i~~P~iavItnIg~aHle~fg 196 (451) T COG0770 143 ----------------GLPLTL------L----RLPADTEYAVLEMGMNHPGEIAELSEIARPDIAVITNIGEAHLEGFG 196 (451) T ss_pred ----------------CCHHHH------H----HCCCCCCEEEEECCCCCCCCHHHHHCCCCCCEEEECCHHHHHHHHCC T ss_conf ----------------415689------7----47776647999868997774788844058988998380599987428 Q ss_pred CCHHHHHHHHHHHC---CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCC----CCCC-----CCCCCEEEEEECCC Q ss_conf 85234456665311---379833154447178988999986210566523576----3210-----12585244431033 Q gi|254780821|r 160 NTVSAIAKDKSGII---KPGCPVVIGHQVYDEVREILVSKAEKMGCPYNVYGD----DFYA-----FEKNKCLVYQDKIS 227 (429) Q Consensus 160 ~tle~Ia~eKa~I~---k~~~~~v~~~~~~~~~~~~i~~~a~~~~~~~~~~~~----~~~~-----~~~~~~~~~~~~~~ 227 (429) T Consensus 197 -s~e~Ia~aK~Ei~~~~~~~g~ai~n~d-~~~~~~~~---~~~~~~~v~~fg~~~~~d~~~~~i~~~~~~~~f~~~~~~~ 271 (451) T COG0770 197 -SREGIAEAKAEILAGLRPEGIAILNAD-NPLLKNWA---AKIGNAKVLSFGLNNGGDFRATNIHLDEEGSSFTLDIEGG 271 (451) T ss_pred -CHHHHHHHHHHHHHCCCCCCEEEEECC-CHHHHHHH---HHCCCCCEEEECCCCCCCEEEEEEEECCCCEEEEEEECCC T ss_conf -899999999999815687867998786-17778777---6357875799768877752567789838850799980683 Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHCCCCCCCCC-CCCCEEEEECCCCCCCCCCCCEEEEECCC--CHH Q ss_conf 334444443222211111469999875320000110011222233-66530354228754445787459993363--215 Q gi|254780821|r 228 QTNLTVLGLVGEHQYINAATAICAVQMAGFTLEKECINAALQSVQ-WFGRLQKITEGPLLNKLPDHSEVWIDGGH--NPN 304 (429) Q Consensus 228 ~~~~~~l~l~G~hn~~Na~~Aiaa~~~lg~~i~~~~I~~gL~~~~-~pGR~e~i~~~~~~~~~~~~~~viiD~AH--Np~ 304 (429) T Consensus 272 ~-~~~~l~~~G~hn~~NalaA~a~a~~lG~~--~e~i~~~L~~~~~~~gR~~~~~~-------~~g~~-iIdD~YNAnp~ 340 (451) T COG0770 272 E-AEFELPLPGRHNVTNALAAAALALELGLD--LEEIAAGLKELKPVKGRLEVILL-------ANGKT-LIDDSYNANPD 340 (451) T ss_pred E-EEEEECCCCHHHHHHHHHHHHHHHHCCCC--HHHHHHHHHHCCCCCCCCEEEEC-------CCCCE-EEECCCCCCHH T ss_conf 3-79994578476899999999999981999--99999999863788866336764-------89818-99737889989 Q ss_pred HHHHHHHHHHHHCCCCCCCEEEEECCCCC--C----CHHHHHHHHHHH-CCEEEEEEECCCCCCCCCCCCCHHHHHHHHH Q ss_conf 79988865433114777712431134679--8----989999988863-8889998422889984212789899999998 Q gi|254780821|r 305 AGLVVSKEISKLKGSSNKPFYLVIGMVEG--K----KYGRYLEAFVEL-SPIVLSVSLICRGRERQSISITPKVLMQEAK 377 (429) Q Consensus 305 s~~~l~~~l~~l~~~~~~~i~~I~G~~~d--K----d~~~~l~~l~~~-~d~i~~~~~~~~~~~~~~~~~~~~~l~~~~~ 377 (429) T Consensus 341 sm~aai~~l~~~~~~---~~i~VlGdM~ELG~~s~~~H~~v~~~~~~~~~d~v~~~G------------~~~~~i~~~~- 404 (451) T COG0770 341 SMRAALDLLAALPGR---KGIAVLGDMLELGEESEELHEEVGEYAVEAGIDLVFLVG------------ELSKAIAEAL- 404 (451) T ss_pred HHHHHHHHHHHCCCC---CCEEEECCHHHHCCCHHHHHHHHHHHHHHCCCEEEEEEC------------CCHHHHHHHC- T ss_conf 999999999637668---857994776663854899999999999856950999976------------2069999865- Q ss_pred HCCCCEEEECCHHHHHHHHHHHCCCCCCCEEEEECCHHH Q ss_conf 549978996998999999998603588679999497799 Q gi|254780821|r 378 KLGFQAMACSSMIEALSRVRKINEELPPPLILIAGSLYL 416 (429) Q Consensus 378 ~~~~~~~~~~~~~eAi~~a~~~~~~~~~d~VLV~GS~yl 416 (429) T Consensus 405 --~~~~~~f~~~~~l~~~l~~~--l~~gd~vLvKgSr~~ 439 (451) T COG0770 405 --GNKGIYFADKEELITSLKAL--LRKGDVVLVKGSRGM 439 (451) T ss_pred --CCCEEECCCHHHHHHHHHHH--CCCCCEEEEECCCCC T ss_conf --77758607779999999985--677878999737646 |
|
>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
---|
Probab=100.00 E-value=1.2e-38 Score=257.96 Aligned_cols=342 Identities=21% Similarity=0.241 Sum_probs=228.8 Q ss_pred HHHHHHHHHCCCHHHHCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEECCCCCCCEECCHHHHH Q ss_conf 99999998729958835983999458984799999999999978935141378411012008988847787155889999 Q gi|254780821|r 7 LKMGYLLEDLGRPQDRLPPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNERFRLGVKGGRGRLVEDVELL 86 (429) Q Consensus 7 ~r~~~ll~~lg~P~~~~~~vI~VtGTnGKttt~~~i~~il~~~g~k~g~~tSPhl~~~~Eri~i~~~~~~g~~i~~~~~~ 86 (429) T Consensus 95 ~r~e~L~elm~----~-~~~iaVaGTHGKTTTTsmla~vl~~~gldPtf-------------~iGG~-----~-~----- 145 (459) T COG0773 95 SRAEMLAELMR----F-RTSIAVAGTHGKTTTTSMLAWVLEAAGLDPTF-------------LIGGI-----L-K----- 145 (459) T ss_pred CHHHHHHHHHH----C-CEEEEEECCCCCHHHHHHHHHHHHHCCCCCEE-------------EECCC-----C-C----- T ss_conf 28999999970----7-71699947887540899999999867999879-------------97774-----4-5----- Q ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHCCCCCCCHHHHH Q ss_conf 99999863047767795789999999874114462477764447567641356775158986025000000278523445 Q gi|254780821|r 87 DVFRRVRRVKSAQNLTIFELSIATALVLFSKYPADCAIIEVGLGGSLDATNIIEKVAVSVITSISLDHEKILGNTVSAIA 166 (429) Q Consensus 87 ~~~~~i~~~~~~~~~t~FE~lt~~a~~~f~~~~~d~~vlE~GlGGr~DaTnvi~~~~vavITnI~~DHle~LG~tle~Ia 166 (429) T Consensus 146 -------~~g~na~~----------------g~~~~fV~EAD---EsD~sFl~~~P~~aIvTNid~DH~D~y~-~~~~i~ 198 (459) T COG0773 146 -------NFGTNARL----------------GSGDYFVAEAD---ESDSSFLHYNPRVAIVTNIEFDHLDYYG-DLEAIK 198 (459) T ss_pred -------CCCCCCCC----------------CCCCEEEEEEC---CCCCCCCCCCCCEEEEECCCCCCHHHHC-CHHHHH T ss_conf -------57765545----------------88864999951---5416502488978998078834001218-999999 Q ss_pred H--HHH-HHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCC----CCCCC-----CCCEEEEEECCCCCCCCCC Q ss_conf 6--665-3113798331544471789889999862105665235763----21012-----5852444310333344444 Q gi|254780821|r 167 K--DKS-GIIKPGCPVVIGHQVYDEVREILVSKAEKMGCPYNVYGDD----FYAFE-----KNKCLVYQDKISQTNLTVL 234 (429) Q Consensus 167 ~--eKa-~I~k~~~~~v~~~~~~~~~~~~i~~~a~~~~~~~~~~~~~----~~~~~-----~~~~~~~~~~~~~~~~~~l 234 (429) T Consensus 199 ~~F~~f~~~vp~~G~~v~~~d-d~~l~~l~~~~---~~~~v~tyG~~~~ad~~a~ni~~~~~~~~F~V~~~g~~~~~~~l 274 (459) T COG0773 199 QAFHHFVRNVPFYGRAVVCGD-DPNLRELLSRG---CWSPVVTYGFDDEADWRAENIRQDGSGTTFDVLFRGEELGEVKL 274 (459) T ss_pred HHHHHHHHHCCCCCEEEEECC-CHHHHHHHHCC---CCCCEEEECCCCCCCEEEEEEEEECCCCEEEEEECCCEEEEEEE T ss_conf 999999983886655999788-88899987222---58737942478767289997687066427999986855679997 Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCHHHHCCCCCCCCCCC-CCEEEEECCCCCCCCCCCCEEEEECCCCHHHHHHHHHHH Q ss_conf 4322221111146999987532000011001122223366-530354228754445787459993363215799888654 Q gi|254780821|r 235 GLVGEHQYINAATAICAVQMAGFTLEKECINAALQSVQWF-GRLQKITEGPLLNKLPDHSEVWIDGGHNPNAGLVVSKEI 313 (429) Q Consensus 235 ~l~G~hn~~Na~~Aiaa~~~lg~~i~~~~I~~gL~~~~~p-GR~e~i~~~~~~~~~~~~~~viiD~AHNp~s~~~l~~~l 313 (429) T Consensus 275 ~~pG~HNvlNAlaaia~a~~~Gi--~~~~i~~aL~~F~GvkRRfe~~g~~-------~~~~viDDYaHHPtEI~aTL~aa 345 (459) T COG0773 275 PLPGRHNVLNALAAIAVARELGI--DPEAIAEALASFQGVKRRFELKGEV-------NGVTVIDDYAHHPTEIKATLAAA 345 (459) T ss_pred CCCCHHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHCCCCCEEEEEEEEE-------CCEEEEECCCCCHHHHHHHHHHH T ss_conf 26762268889999999998499--9899999997388964136886468-------87899856888979999999999 Q ss_pred HHHCCCCCCCEEEEEC---CCCCCC-HHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCH Q ss_conf 3311477771243113---467989-899999888638889998422889984212789899999998549978996998 Q gi|254780821|r 314 SKLKGSSNKPFYLVIG---MVEGKK-YGRYLEAFVELSPIVLSVSLICRGRERQSISITPKVLMQEAKKLGFQAMACSSM 389 (429) Q Consensus 314 ~~l~~~~~~~i~~I~G---~~~dKd-~~~~l~~l~~~~d~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 389 (429) T Consensus 346 R~~~~~-~~rIvaifQPHrySRt~~~~~dF~~~l-~~AD~v~l~~VY~A~e~~~~g~~~~~~l~~~i~~~~~~~--~~~~ 421 (459) T COG0773 346 RQKVPG-GKRIVAVFQPHRYSRTRDLLDDFAKAL-SDADEVILLDVYAAGEEPIEGDVSSEDLAEKIRQPGHVD--VPDL 421 (459) T ss_pred HHHCCC-CCEEEEEECCCCHHHHHHHHHHHHHHH-HCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHCCCCCC--CCCH T ss_conf 976588-866999977873175899999999888-519999996233357888767753999999851377014--7888 Q ss_pred HHHHHHHHHHCCCCCCCEEEEE--CCH-HHHHHHHHH Q ss_conf 9999999986035886799994--977-999999998 Q gi|254780821|r 390 IEALSRVRKINEELPPPLILIA--GSL-YLAGEALRE 423 (429) Q Consensus 390 ~eAi~~a~~~~~~~~~d~VLV~--GS~-ylvge~l~~ 423 (429) T Consensus 422 ~~~~~~l~~~--~~~gD~il~mGAGdi~~~~~~~~~~ 456 (459) T COG0773 422 DDLVELLAKV--AQPGDVILFMGAGDIGKIARELLEA 456 (459) T ss_pred HHHHHHHHHH--CCCCCEEEEECCCCHHHHHHHHHHH T ss_conf 8999999964--7899989996688478899999987 |
|
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
---|
Probab=100.00 E-value=5.9e-39 Score=259.82 Aligned_cols=301 Identities=20% Similarity=0.192 Sum_probs=191.4 Q ss_pred CEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEECCCCCCCEECCHHHHHHHHHHHHHCCCCCCCCHH Q ss_conf 83999458984799999999999978935141378411012008988847787155889999999998630477677957 Q gi|254780821|r 25 PVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNERFRLGVKGGRGRLVEDVELLDVFRRVRRVKSAQNLTIF 104 (429) Q Consensus 25 ~vI~VtGTnGKttt~~~i~~il~~~g~k~g~~tSPhl~~~~Eri~i~~~~~~g~~i~~~~~~~~~~~i~~~~~~~~~t~F 104 (429) T Consensus 105 ~~IaITGTnGKTTTt~li~~iL~~~g~~~~~---------------~GNI--G~p~l~---------------------- 145 (450) T PRK01368 105 KFIAITGTNGKSTTTALISHILNSNGLDYPV---------------AGNI--GVPALQ---------------------- 145 (450) T ss_pred CEEEEECCCCCHHHHHHHHHHHHHCCCCEEE---------------ECCC--CHHHHH---------------------- T ss_conf 7799968999748999999999975996289---------------6255--636652---------------------- Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHCCCCCCCHHHHHHHHHHHCC---CCCCCCC Q ss_conf 8999999987411446247776444756764135677515898602500000027852344566653113---7983315 Q gi|254780821|r 105 ELSIATALVLFSKYPADCAIIEVGLGGSLDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGIIK---PGCPVVI 181 (429) Q Consensus 105 E~lt~~a~~~f~~~~~d~~vlE~GlGGr~DaTnvi~~~~vavITnI~~DHle~LG~tle~Ia~eKa~I~k---~~~~~v~ 181 (429) T Consensus 146 -----------~~~~~d~~VlElSS-fQl~~~~~~-~p~iAVilNIs~DHLD~h~-s~e~Y~~aK~~If~~~~~~~~~Vi 211 (450) T PRK01368 146 -----------AKASKDGYVLELSS-FQLDLVKTF-TAKIAVLLNITPDHLDRHQ-DMNGYIAAKSKIFDRMDKDSYAVI 211 (450) T ss_pred -----------CCCCCCEEEEEECC-CCHHCCCCC-CCCEEEEECCCHHHHHHHC-CHHHHHHHHHHHHHCCCCCCEEEE T ss_conf -----------52689759999356-522036347-9878999468877987726-878999999999965898888999 Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCCCCCCC----CCCCCCCEEEE--EECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH Q ss_conf 444717898899998621056652357632----10125852444--310333344444432222111114699998753 Q gi|254780821|r 182 GHQVYDEVREILVSKAEKMGCPYNVYGDDF----YAFEKNKCLVY--QDKISQTNLTVLGLVGEHQYINAATAICAVQMA 255 (429) Q Consensus 182 ~~~~~~~~~~~i~~~a~~~~~~~~~~~~~~----~~~~~~~~~~~--~~~~~~~~~~~l~l~G~hn~~Na~~Aiaa~~~l 255 (429) T Consensus 212 n~D-d~~~~~l~~~l~~~~~~~~i~f~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~L~G~HN~~NalAA~a~a~~l 290 (450) T PRK01368 212 NID-NDYCREIFIKLQQEQRIKLIPFSVTKILENGISVVDDKILDNFFDDISFKLPFNKNLQGKHNCENIAASYAVAKII 290 (450) T ss_pred ECC-CHHHHHHHHHHCCCCCEEEEEECCCCCCCCCEEEECCEEEEECCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHH T ss_conf 787-4889999986300455169740345324477488547335520155330045211357565899999999999980 Q ss_pred HHCCHHHHCCCCCCCCC-CCCCEEEEECCCCCCCCCCCCEEEEEC-CCCHHHHHHHHHHHHHHCCCCCCCEEEEECCC-C Q ss_conf 20000110011222233-665303542287544457874599933-63215799888654331147777124311346-7 Q gi|254780821|r 256 GFTLEKECINAALQSVQ-WFGRLQKITEGPLLNKLPDHSEVWIDG-GHNPNAGLVVSKEISKLKGSSNKPFYLVIGMV-E 332 (429) Q Consensus 256 g~~i~~~~I~~gL~~~~-~pGR~e~i~~~~~~~~~~~~~~viiD~-AHNp~s~~~l~~~l~~l~~~~~~~i~~I~G~~-~ 332 (429) T Consensus 291 G--i~~~~I~~aL~~F~glpHRlE~V~~-------~~gv~~iNDSKaTN~~a~~~Al~~~------~--~i~lI~GG~~K 353 (450) T PRK01368 291 G--VEPKKILESISSFQSLPHRMQYIGS-------INNISFYNDSKATNAISAVQSIKAL------D--NIYWLAGGIPK 353 (450) T ss_pred C--CCHHHHHHHHHCCCCHHHEEEEEEE-------ECCEEEECCCCCCCHHHHHHHHHCC------C--CEEEEEECCCC T ss_conf 9--9777778764246770014689999-------8999997178878999999998568------9--73999941577 Q ss_pred CCCHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHCCC--CCCCEEEE Q ss_conf 9898999998886388899984228899842127898999999985499789969989999999986035--88679999 Q gi|254780821|r 333 GKKYGRYLEAFVELSPIVLSVSLICRGRERQSISITPKVLMQEAKKLGFQAMACSSMIEALSRVRKINEE--LPPPLILI 410 (429) Q Consensus 333 dKd~~~~l~~l~~~~d~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~eAi~~a~~~~~~--~~~d~VLV 410 (429) T Consensus 354 ~~d~~~l~~~~~~-v~~~~l---~G---------~~~~~~~~~~~-~~~~~~~~~~l~~av~~a~~~a~~~~~~~~~VLl 419 (450) T PRK01368 354 EGGIEEIKPYFSK-IKKAYF---YG---------QAKEMFANTAK-NIVDFVICDNLEQAFDLAYKDAVGDNAEVKNILL 419 (450) T ss_pred CCCHHHHHHHHHC-CCEEEE---EC---------CCHHHHHHHCC-CCCCEEECCCHHHHHHHHHHHHHCCCCCCCEEEE T ss_conf 7887999988743-879999---89---------78999998605-8987696499999999999997557878997996 |
|
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
---|
Probab=100.00 E-value=8.6e-39 Score=258.81 Aligned_cols=302 Identities=17% Similarity=0.186 Sum_probs=191.9 Q ss_pred CEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEECCCCCCCEECCHHHHHHHHHHHHHCCCCCCCCHH Q ss_conf 83999458984799999999999978935141378411012008988847787155889999999998630477677957 Q gi|254780821|r 25 PVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNERFRLGVKGGRGRLVEDVELLDVFRRVRRVKSAQNLTIF 104 (429) Q Consensus 25 ~vI~VtGTnGKttt~~~i~~il~~~g~k~g~~tSPhl~~~~Eri~i~~~~~~g~~i~~~~~~~~~~~i~~~~~~~~~t~F 104 (429) T Consensus 124 ~~IaVTGTnGKTTTtsli~~iL~~~g~~~~~--------------~GN---IG~p~~~~--------l------------ 166 (476) T PRK00141 124 TWLAVTGTNGKTTTTAMLAAMMQAGGFAAVA--------------VGN---IGIPVSAA--------L------------ 166 (476) T ss_pred CEEEEECCCCHHHHHHHHHHHHHHCCCCCEE--------------EEE---CCCHHHHH--------H------------ T ss_conf 6388968996798999999999837997289--------------950---67246666--------5------------ Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCC Q ss_conf 89999999874114462477764447567641356775158986025000000278523445666531137983315444 Q gi|254780821|r 105 ELSIATALVLFSKYPADCAIIEVGLGGSLDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGIIKPGCPVVIGHQ 184 (429) Q Consensus 105 E~lt~~a~~~f~~~~~d~~vlE~GlGGr~DaTnvi~~~~vavITnI~~DHle~LG~tle~Ia~eKa~I~k~~~~~v~~~~ 184 (429) T Consensus 167 ----------~~~~~~d~~VlElSS-fQL~~~~~~-~p~iaVilNIs~DHLD~h~-s~e~Y~~aK~kI~~~~~~vi-~~D 232 (476) T PRK00141 167 ----------VAQNRIDVLVAELSS-FQLHWAPTF-TPDAGVVLNLAEDHIDWHG-SMRDYALDKARVLTAPVAVI-GAD 232 (476) T ss_pred ----------HCCCCCCEEEEECCC-CHHCCCCCC-CCCEEEEECCCHHHHHHHC-CHHHHHHHHHHHHCCCCEEE-ECC T ss_conf ----------257877589997782-012002236-8658987268878986626-99999999998734882499-778 Q ss_pred CCHHHHHHHHHHHHHCCCCCCCCCC--CCCCCCCCCEEEE---EECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC Q ss_conf 7178988999986210566523576--3210125852444---3103333444444322221111146999987532000 Q gi|254780821|r 185 VYDEVREILVSKAEKMGCPYNVYGD--DFYAFEKNKCLVY---QDKISQTNLTVLGLVGEHQYINAATAICAVQMAGFTL 259 (429) Q Consensus 185 ~~~~~~~~i~~~a~~~~~~~~~~~~--~~~~~~~~~~~~~---~~~~~~~~~~~l~l~G~hn~~Na~~Aiaa~~~lg~~i 259 (429) T Consensus 233 -d~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~G~HNl~NalAA~a~a~~lG--i 308 (476) T PRK00141 233 -DPYVVELTREADLS-GLIGFTLGEPAEGQVGVRAGELVDNAFGDNVVLASADGINPAGPAGVLDALAAAAVARSQG--V 308 (476) T ss_pred -CHHHHHHHHHCCCC-CEEEECCCCCCCCCEEEECCEEEEEECCCCCEECCHHHCCCCCHHHHHHHHHHHHHHHHCC--C T ss_conf -78999988744788-6798527875535244776889985157750321243237765335999999999999849--9 Q ss_pred HHHHCCCCCCCCC-CCCCEEEEECCCCCCCCCCCCEEEEEC-CCCHHHHHHHHHHHHHHCCCCCCCEEEEECC-CCCCCH Q ss_conf 0110011222233-665303542287544457874599933-6321579988865433114777712431134-679898 Q gi|254780821|r 260 EKECINAALQSVQ-WFGRLQKITEGPLLNKLPDHSEVWIDG-GHNPNAGLVVSKEISKLKGSSNKPFYLVIGM-VEGKKY 336 (429) Q Consensus 260 ~~~~I~~gL~~~~-~pGR~e~i~~~~~~~~~~~~~~viiD~-AHNp~s~~~l~~~l~~l~~~~~~~i~~I~G~-~~dKd~ 336 (429) T Consensus 309 ~~e~I~~aL~~F~gl~HR~E~v~~-------~~gV~fiNDSKaTN~~at~~AL~~~--------~~iilI~GG~~Kg~d~ 373 (476) T PRK00141 309 APEAIARALAGFEVAGHRGQVVAE-------HDGVHFIDNSKATNPHAADSALAGH--------ESVIWVAGGQLKGADI 373 (476) T ss_pred CHHHHHHHHHHCCCCCCCEEEEEE-------ECCEEEECCCCCCCHHHHHHHHHHC--------CCCEEEECCCCCCCCH T ss_conf 999999999856898861279999-------8999998179899989999999728--------8739994476577787 Q ss_pred HHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCC--CCEEEE------CCHHHHHHHHHHHCCCCCCCEE Q ss_conf 99999888638889998422889984212789899999998549--978996------9989999999986035886799 Q gi|254780821|r 337 GRYLEAFVELSPIVLSVSLICRGRERQSISITPKVLMQEAKKLG--FQAMAC------SSMIEALSRVRKINEELPPPLI 408 (429) Q Consensus 337 ~~~l~~l~~~~d~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~------~~~~eAi~~a~~~~~~~~~d~V 408 (429) T Consensus 374 ~~l~~~~~~~vk~v~l~---G---------~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~av~~a~~~a--~~gd~V 439 (476) T PRK00141 374 DELIATHGGRIKAALVL---G---------ADRAEIVAAVKEHAPDAPVTVTDKTDPEEAMREAVAAAFSLA--EPGDSV 439 (476) T ss_pred HHHHHHHHHHCEEEEEE---C---------CCHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHC--CCCCEE T ss_conf 99999986331099997---6---------898999999985478882688615457889999999999738--898989 Q ss_pred EE Q ss_conf 99 Q gi|254780821|r 409 LI 410 (429) Q Consensus 409 LV 410 (429) T Consensus 440 LL 441 (476) T PRK00141 440 VL 441 (476) T ss_pred EE T ss_conf 98 |
|
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
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Probab=100.00 E-value=1.9e-38 Score=256.64 Aligned_cols=317 Identities=23% Similarity=0.318 Sum_probs=211.5 Q ss_pred CCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEECCCCCCCEECCHHHHHHHHHHHHHCCCCCCCCH Q ss_conf 98399945898479999999999997893514137841101200898884778715588999999999863047767795 Q gi|254780821|r 24 PPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNERFRLGVKGGRGRLVEDVELLDVFRRVRRVKSAQNLTI 103 (429) Q Consensus 24 ~~vI~VtGTnGKttt~~~i~~il~~~g~k~g~~tSPhl~~~~Eri~i~~~~~~g~~i~~~~~~~~~~~i~~~~~~~~~t~ 103 (429) T Consensus 110 ~p~vaITGTNGKTTTTsli~~~l~~~G~~~~l---------------gGNI--G~p~l~~-------------------- 152 (448) T COG0771 110 APIVAITGTNGKTTTTSLIAHLLKAAGLDALL---------------GGNI--GTPALEL-------------------- 152 (448) T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHCCCCCEE---------------CCCC--CCCHHHH-------------------- T ss_conf 99899979996288999999999855998321---------------3516--7137876-------------------- Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHCCCCCCCHHHHHHHHHHHCCCCC-CCCCC Q ss_conf 78999999987411446247776444756764135677515898602500000027852344566653113798-33154 Q gi|254780821|r 104 FELSIATALVLFSKYPADCAIIEVGLGGSLDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGIIKPGC-PVVIG 182 (429) Q Consensus 104 FE~lt~~a~~~f~~~~~d~~vlE~GlGGr~DaTnvi~~~~vavITnI~~DHle~LG~tle~Ia~eKa~I~k~~~-~~v~~ 182 (429) T Consensus 153 ---~~-------~~~~~d~~VlElSS-fQL~~~~~~-~P~iavilNi~~DHLD~H~-s~e~Y~~aK~~i~~~~~~~~Vin 219 (448) T COG0771 153 ---LE-------QAEPADVYVLELSS-FQLETTSSL-RPEIAVILNISEDHLDRHG-SMENYAAAKLRILEGQTEVAVIN 219 (448) T ss_pred ---HC-------CCCCCCEEEEECCC-CCCCCCCCC-CCCEEEEECCCHHHHHHCC-CHHHHHHHHHHHHCCCCCEEEEE T ss_conf ---20-------15789879999245-551657667-8557999448877865606-99999999999983896279983 Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCCCCCCC--CCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCH Q ss_conf 44717898899998621056652357632--1012585244431033334444443222211111469999875320000 Q gi|254780821|r 183 HQVYDEVREILVSKAEKMGCPYNVYGDDF--YAFEKNKCLVYQDKISQTNLTVLGLVGEHQYINAATAICAVQMAGFTLE 260 (429) Q Consensus 183 ~~~~~~~~~~i~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~~Aiaa~~~lg~~i~ 260 (429) T Consensus 220 ~d-d~~~~~~~~~~-~~~~~~~fs~~~~~~~~~~~~~~~~~~~~-~~i~~~~~l~l~G~hn~~N~lAa~a~a~~~g--v~ 294 (448) T COG0771 220 AD-DAYLKTLADEA-TKARVIWFSFGEPLADGDYIYDGKLVFKG-EKLLPADELKLPGAHNLENALAALALARALG--VP 294 (448) T ss_pred CC-CHHHHHHHHHC-CCCEEEEEECCCCCCCCCEEECCHHCCCC-CCCCCHHHCCCCCHHHHHHHHHHHHHHHHCC--CC T ss_conf 77-27776544303-66326889746645566334340110353-0003342158754524998999999999839--99 Q ss_pred HHHCCCCCCCCC-CCCCEEEEECCCCCCCCCCCCEEEEEC-CCCHHHHHHHHHHHHHHCCCCCCCEEEEECCC-CCCCHH Q ss_conf 110011222233-665303542287544457874599933-63215799888654331147777124311346-798989 Q gi|254780821|r 261 KECINAALQSVQ-WFGRLQKITEGPLLNKLPDHSEVWIDG-GHNPNAGLVVSKEISKLKGSSNKPFYLVIGMV-EGKKYG 337 (429) Q Consensus 261 ~~~I~~gL~~~~-~pGR~e~i~~~~~~~~~~~~~~viiD~-AHNp~s~~~l~~~l~~l~~~~~~~i~~I~G~~-~dKd~~ 337 (429) T Consensus 295 ~e~i~~~L~~F~gl~HR~e~v~~~-------~gv~f~NDSKATN~~At~~AL~~~------~-~~v~lI~GG~~Kg~df~ 360 (448) T COG0771 295 PEAILEALSSFTGLPHRLEFVGEK-------DGVLFINDSKATNVDATLAALSGF------D-GPVILIAGGDDKGADFS 360 (448) T ss_pred HHHHHHHHHHCCCCCCCEEEEEEC-------CCEEEECCCCCCCHHHHHHHHHCC------C-CCEEEEECCCCCCCCHH T ss_conf 899999997389998622798861-------988996078788888999999718------9-97799977778888816 Q ss_pred HHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHCCCCCCCEEEE---ECC- Q ss_conf 9999888638889998422889984212789899999998549978996998999999998603588679999---497- Q gi|254780821|r 338 RYLEAFVELSPIVLSVSLICRGRERQSISITPKVLMQEAKKLGFQAMACSSMIEALSRVRKINEELPPPLILI---AGS- 413 (429) Q Consensus 338 ~~l~~l~~~~d~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~eAi~~a~~~~~~~~~d~VLV---~GS- 413 (429) T Consensus 361 ~L~~~~~~~~~~~~~~------------G~~~~~i~~~l~~~~~~~~~~~~le~Av~~a~~~a--~~gd~VLLSPacASf 426 (448) T COG0771 361 PLAEILAKVIKKLVLI------------GEDAEKIAAALKEAGPSLVICETLEEAVQLARELA--QPGDVVLLSPACASF 426 (448) T ss_pred HHHHHHHHCCEEEEEE------------CCCHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHH--CCCCEEEECCCCCCH T ss_conf 8899774155599994------------78889999998752785361476999999999872--589869976442164 Q ss_pred -----HHHHHHHHHH Q ss_conf -----7999999998 Q gi|254780821|r 414 -----LYLAGEALRE 423 (429) Q Consensus 414 -----~ylvge~l~~ 423 (429) T Consensus 427 Dqf~~feeRG~~F~~ 441 (448) T COG0771 427 DQFKNFEERGEEFKE 441 (448) T ss_pred HHHCCHHHHHHHHHH T ss_conf 222379999999999 |
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>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase; InterPro: IPR005762 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment | Back alignment and domain information |
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Probab=100.00 E-value=9.9e-38 Score=252.27 Aligned_cols=312 Identities=21% Similarity=0.229 Sum_probs=215.4 Q ss_pred CEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEECCCCCCCEECCHHHHHHHHHHHHHCCCCCCCCHH Q ss_conf 83999458984799999999999978935141378411012008988847787155889999999998630477677957 Q gi|254780821|r 25 PVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNERFRLGVKGGRGRLVEDVELLDVFRRVRRVKSAQNLTIF 104 (429) Q Consensus 25 ~vI~VtGTnGKttt~~~i~~il~~~g~k~g~~tSPhl~~~~Eri~i~~~~~~g~~i~~~~~~~~~~~i~~~~~~~~~t~F 104 (429) T Consensus 111 ~~~aITGTnGKtTTT~L~~~~L~~~G~~a~---------------~gGNI--G~p~L----------------------- 150 (476) T TIGR01087 111 KVVAITGTNGKTTTTSLLYHLLKAAGLKAV---------------LGGNI--GTPAL----------------------- 150 (476) T ss_pred CEEEEECCCCHHHHHHHHHHHHHHCCCCEE---------------EECCC--CCHHH----------------------- T ss_conf 379997268607999999999984699778---------------62578--81255----------------------- Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCC-CCCEEEEEECCCHHCCCCCCCHHHHHHHHHHHCCCC---CCCC Q ss_conf 899999998741144624777644475676413567-751589860250000002785234456665311379---8331 Q gi|254780821|r 105 ELSIATALVLFSKYPADCAIIEVGLGGSLDATNIIE-KVAVSVITSISLDHEKILGNTVSAIAKDKSGIIKPG---CPVV 180 (429) Q Consensus 105 E~lt~~a~~~f~~~~~d~~vlE~GlGGr~DaTnvi~-~~~vavITnI~~DHle~LG~tle~Ia~eKa~I~k~~---~~~v 180 (429) T Consensus 151 --------~~~~~~~~~~~VlElSS-FQL~~~~~~~p~p~i~~~lNi~~DHLD~h~-~~~~Y~~aK~~i~~~~~~~d~~v 220 (476) T TIGR01087 151 --------EVLDQEGAELYVLELSS-FQLETTESLRPAPEIALILNISEDHLDWHG-SFEDYVAAKLKIFARQTEGDVAV 220 (476) T ss_pred --------HHHCCCCCCEEEEEECC-HHHCCCCCCCCCCEEEEEECCCHHHHCCCC-CHHHHHHHHHHHHCCCCCCCEEE T ss_conf --------53105889669997000-320457555665124687066356301107-98899999889852599876798 Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCCCCCCC---C----CCCCCCEEEEEECC---------CCCCCCCCCCCCCCCCCC Q ss_conf 5444717898899998621056652357632---1----01258524443103---------333444444322221111 Q gi|254780821|r 181 IGHQVYDEVREILVSKAEKMGCPYNVYGDDF---Y----AFEKNKCLVYQDKI---------SQTNLTVLGLVGEHQYIN 244 (429) Q Consensus 181 ~~~~~~~~~~~~i~~~a~~~~~~~~~~~~~~---~----~~~~~~~~~~~~~~---------~~~~~~~l~l~G~hn~~N 244 (429) T Consensus 221 ~n~d~~--~~~~~~~~~~~~~~~~~~~~~~~CP~~~~~~l~~~~~~~~l~~~~e~~~~C~~~~~~~~~~~~l~g~h~~~n 298 (476) T TIGR01087 221 LNADQA--YDPRFTRLEKKSKAQVVLFSVEKCPAEAEQGLEIRDGKEYLKPNDENDFACDDLTILPCEELKLLGLHNAEN 298 (476) T ss_pred EECCCC--CCCHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHCCCCCCCHHHHHH T ss_conf 812002--550465212467530787404458088997641238852633678763000011243321567678889999 Q ss_pred HHHHHHHHHHHHHC--CHHHHCCCCCCCCC-CCCCEEEEECCCCCCCCCCCCEEEEEC-CCCHHHHHHHHHHHHHHCCCC Q ss_conf 14699998753200--00110011222233-665303542287544457874599933-632157998886543311477 Q gi|254780821|r 245 AATAICAVQMAGFT--LEKECINAALQSVQ-WFGRLQKITEGPLLNKLPDHSEVWIDG-GHNPNAGLVVSKEISKLKGSS 320 (429) Q Consensus 245 a~~Aiaa~~~lg~~--i~~~~I~~gL~~~~-~pGR~e~i~~~~~~~~~~~~~~viiD~-AHNp~s~~~l~~~l~~l~~~~ 320 (429) T Consensus 299 ~laa~ala~~~g~~~~~~~~~~~~~l~~F~~~~HRlE~~~~-------~~G~~f~NDSKATn~~At~~AL~~~~~----- 366 (476) T TIGR01087 299 ILAAIALAKSLGLNSDEELEAILEALRSFKGLPHRLEYVGQ-------KNGVHFINDSKATNVHATLAALSALKN----- 366 (476) T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCEEEEEE-------CCCEEEEECCCCCCHHHHHHHHHHCCC----- T ss_conf 99999999982889760168999999845798762688777-------285479825621218999999984799----- Q ss_pred CCCEEEEECC-CCCCCHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCE-E----EECCHHHHHH Q ss_conf 7712431134-67989899999888638889998422889984212789899999998549978-9----9699899999 Q gi|254780821|r 321 NKPFYLVIGM-VEGKKYGRYLEAFVELSPIVLSVSLICRGRERQSISITPKVLMQEAKKLGFQA-M----ACSSMIEALS 394 (429) Q Consensus 321 ~~~i~~I~G~-~~dKd~~~~l~~l~~~~d~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~----~~~~~~eAi~ 394 (429) T Consensus 367 ~~~~~LI~GG~~KG~df~~L~~~~~~~~~~~~~~------------G~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~Av~ 434 (476) T TIGR01087 367 PKRVILIVGGDDKGADFSPLAPALKKKVKAVLAI------------GEDAAKIAKLLKEIGLVVKYGEETLVESLEEAVQ 434 (476) T ss_pred CCEEEEEEECCCCCCCHHHHHHHHCCCEEEEEEE------------CCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH T ss_conf 9718999603468998489999843650799985------------3547899998634276435465305778999999 Q ss_pred HHHHHCCCCCC--CEEEE---ECCH Q ss_conf 99986035886--79999---4977 Q gi|254780821|r 395 RVRKINEELPP--PLILI---AGSL 414 (429) Q Consensus 395 ~a~~~~~~~~~--d~VLV---~GS~ 414 (429) T Consensus 435 ~a~~~~~--~g~~d~vLLSPacASF 457 (476) T TIGR01087 435 AAREVAK--EGNADVVLLSPACASF 457 (476) T ss_pred HHHHHHC--CCCCCEEEECCCCCCH T ss_conf 9999712--7997679888641217 |
The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) , MurD (6.3.2.9 from EC) , MurE (6.3.2.13 from EC) and MurF (6.3.2.10 from EC) . These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales . This entry represents UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD). MurD catalyses the addition of d-glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-l-alanine. ; GO: 0005524 ATP binding, 0008764 UDP-N-acetylmuramoylalanine-D-glutamate ligase activity, 0008360 regulation of cell shape, 0009252 peptidoglycan biosynthetic process, 0009273 peptidoglycan-based cell wall biogenesis, 0051301 cell division, 0005737 cytoplasm. |
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
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Probab=100.00 E-value=9.1e-34 Score=227.78 Aligned_cols=278 Identities=19% Similarity=0.206 Sum_probs=177.5 Q ss_pred CEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEECCCCCCCEECCHHHHHHHHHHHHHCCCCCCCCHH Q ss_conf 83999458984799999999999978935141378411012008988847787155889999999998630477677957 Q gi|254780821|r 25 PVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNERFRLGVKGGRGRLVEDVELLDVFRRVRRVKSAQNLTIF 104 (429) Q Consensus 25 ~vI~VtGTnGKttt~~~i~~il~~~g~k~g~~tSPhl~~~~Eri~i~~~~~~g~~i~~~~~~~~~~~i~~~~~~~~~t~F 104 (429) T Consensus 103 ~~IaITGTNGKTTTt~ll~~iL~~~g~~~~~--------------~GNI---G~p~l~-----~---~------------ 145 (418) T PRK00683 103 PSLGITGSTGKTTTILFLEHLLRTLGIPAFA--------------MGNI---GLPILD-----G---M------------ 145 (418) T ss_pred CEEEEECCCCCEEHHHHHHHHHHHCCCCCEE--------------EECC---CHHHHH-----H---H------------ T ss_conf 8799976898660999999999867998188--------------8034---657776-----4---3------------ Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCC-CCCCEEEEEECCCHHCCCCCCCHHHHHHHHHHHCC---CCCCCC Q ss_conf 89999999874114462477764447567641356-77515898602500000027852344566653113---798331 Q gi|254780821|r 105 ELSIATALVLFSKYPADCAIIEVGLGGSLDATNII-EKVAVSVITSISLDHEKILGNTVSAIAKDKSGIIK---PGCPVV 180 (429) Q Consensus 105 E~lt~~a~~~f~~~~~d~~vlE~GlGGr~DaTnvi-~~~~vavITnI~~DHle~LG~tle~Ia~eKa~I~k---~~~~~v 180 (429) T Consensus 146 -------------~~~~~~VlElSSf-QL~~~~~~~p~~~~avilNis~DHLD~H~-s~e~Y~~aK~~I~~~~~~~~~~~ 210 (418) T PRK00683 146 -------------QQPGVRVVEISSF-QLADQEESIPVLSGGMILNISDNHLDYHG-NLDAYFQAKQNIAKCLRNPDDLW 210 (418) T ss_pred -------------CCCCCEEEEEEHH-HHHHHHHCCCCCCHHHHCCCCCCHHCCCC-CHHHHHHHHHHHHHHCCCCCCEE T ss_conf -------------2589469983124-23212430776221210157842412216-89999999999998467976468 Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCH Q ss_conf 54447178988999986210566523576321012585244431033334444443222211111469999875320000 Q gi|254780821|r 181 IGHQVYDEVREILVSKAEKMGCPYNVYGDDFYAFEKNKCLVYQDKISQTNLTVLGLVGEHQYINAATAICAVQMAGFTLE 260 (429) Q Consensus 181 ~~~~~~~~~~~~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~~Aiaa~~~lg~~i~ 260 (429) T Consensus 211 ~~~~~~~--~~~~~~~~~-----------~~~~~~--------~~~-----~~l~~~~~hn~~N~~aA~a~a~~~~-~i~ 263 (418) T PRK00683 211 VGDERSL--GNSYLEYVQ-----------EIMRLL--------DKG-----SALKPLYLHDRYNYCAAYALANEVF-PIS 263 (418) T ss_pred ECCCCCC--CHHHHHHHH-----------HHHHHH--------CCC-----CCCCCCCCCCHHHHHHHHHHHHHHC-CCC T ss_conf 5254110--178888777-----------777774--------453-----1016544032988999999999857-999 Q ss_pred HHHCCCCCCCCC-CCCCEEEEECCCCCCCCCCCCEEEEEC-CCCHHHHHHHHHHHHHHCCCCCCCEEEEECCC-CCCCHH Q ss_conf 110011222233-665303542287544457874599933-63215799888654331147777124311346-798989 Q gi|254780821|r 261 KECINAALQSVQ-WFGRLQKITEGPLLNKLPDHSEVWIDG-GHNPNAGLVVSKEISKLKGSSNKPFYLVIGMV-EGKKYG 337 (429) Q Consensus 261 ~~~I~~gL~~~~-~pGR~e~i~~~~~~~~~~~~~~viiD~-AHNp~s~~~l~~~l~~l~~~~~~~i~~I~G~~-~dKd~~ 337 (429) T Consensus 264 ~~~i~~al~~F~glpHR~E~v~~-------~~Gv~fiNDSKaTN~~a~~~AL~s~~-------~~iilI~GG~~K~~d~~ 329 (418) T PRK00683 264 PESFLEAVATFEKPPHRMEYLGE-------KDGVHYINDSKATTVSAVEKALLAVG-------KDVIVILGGRNKGGDFP 329 (418) T ss_pred HHHHHHHHHHCCCCCCCEEEEEE-------ECCCEEECCCCCCCHHHHHHHHHHCC-------CCCEEEECCCCCCCCHH T ss_conf 99999999734884111368888-------17823763776789899999998567-------88589975787667869 Q ss_pred HHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHCCCCCCCEEEE Q ss_conf 9999888638889998422889984212789899999998549978996998999999998603588679999 Q gi|254780821|r 338 RYLEAFVELSPIVLSVSLICRGRERQSISITPKVLMQEAKKLGFQAMACSSMIEALSRVRKINEELPPPLILI 410 (429) Q Consensus 338 ~~l~~l~~~~d~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~eAi~~a~~~~~~~~~d~VLV 410 (429) T Consensus 330 ~L~~~~~~~vk~v~~~------------G~~~~~i~~~l~-~~~~~~~~~~l~eAv~~a~~~a--~~gd~VLL 387 (418) T PRK00683 330 SLLPVLRQTAKHVVAM------------GECRQEIAQALS-EKFPLTVVKDLQEAVSCAQEIA--QPGDVILL 387 (418) T ss_pred HHHHHHHHCCCEEEEE------------CCCHHHHHHHHH-CCCCEEECCCHHHHHHHHHHHC--CCCCEEEE T ss_conf 9999986318499996------------889999999875-6998798598999999999847--89898998 |
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>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
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Probab=99.98 E-value=1e-30 Score=208.88 Aligned_cols=280 Identities=18% Similarity=0.203 Sum_probs=174.4 Q ss_pred CCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEECCCCCCCEECCHHHHHHHHHHHHHCCCCCCCCH Q ss_conf 98399945898479999999999997893514137841101200898884778715588999999999863047767795 Q gi|254780821|r 24 PPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNERFRLGVKGGRGRLVEDVELLDVFRRVRRVKSAQNLTI 103 (429) Q Consensus 24 ~~vI~VtGTnGKttt~~~i~~il~~~g~k~g~~tSPhl~~~~Eri~i~~~~~~g~~i~~~~~~~~~~~i~~~~~~~~~t~ 103 (429) T Consensus 89 ~~~I~ITGTNGKsTtt~li~~iL~~~g~~~-----------------~GNI--G~Pl~~-----~--------------- 129 (401) T PRK03815 89 PFSIWISGTNGKTTTTQMLTHLLEDFGAVS-----------------GGNI--GTPLAE-----L--------------- 129 (401) T ss_pred CCCEEEECCCCHHHHHHHHHHHHHHCCCCE-----------------ECCC--CHHHHH-----C--------------- T ss_conf 874899847777899999999998669813-----------------0416--643886-----2--------------- Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHCCCCCCCHHHHHHHHHHHCC---CCCCCC Q ss_conf 78999999987411446247776444756764135677515898602500000027852344566653113---798331 Q gi|254780821|r 104 FELSIATALVLFSKYPADCAIIEVGLGGSLDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGIIK---PGCPVV 180 (429) Q Consensus 104 FE~lt~~a~~~f~~~~~d~~vlE~GlGGr~DaTnvi~~~~vavITnI~~DHle~LG~tle~Ia~eKa~I~k---~~~~~v 180 (429) T Consensus 130 -------------~~~~~~~VlElSS-fQLe~~~~~-~p~iavilNis~DHLDrH~-s~e~Y~~aK~~I~~~~~~~~~~i 193 (401) T PRK03815 130 -------------DPNAKIWVLETSS-FTLHYTNKA-KPNIYLLLPITPDHLSWHG-SFENYEKAKLKPLKLMNEGSVAI 193 (401) T ss_pred -------------CCCCCEEEEEECH-HHCCCCCCC-CCCEEEEECCCCCHHCCCC-CHHHHHHHHHHHHHHCCCCCEEE T ss_conf -------------8778879999344-540667566-8768988368820523626-89999999999996288776799 Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCH Q ss_conf 54447178988999986210566523576321012585244431033334444443222211111469999875320000 Q gi|254780821|r 181 IGHQVYDEVREILVSKAEKMGCPYNVYGDDFYAFEKNKCLVYQDKISQTNLTVLGLVGEHQYINAATAICAVQMAGFTLE 260 (429) Q Consensus 181 ~~~~~~~~~~~~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~~Aiaa~~~lg~~i~ 260 (429) T Consensus 194 ~~~~~-----~~~-----~~~~~~i~~~~~~~~----------~~~~~i~~~~i~~~~~~~~~~-~~a~~~~~~~----~ 248 (401) T PRK03815 194 LPKKY-----KET-----PTKAQKISYEDEEDL----------AEKFGIDTEKINFKGPFLLDA-LLALAVEKIL----F 248 (401) T ss_pred ECHHH-----CCC-----CCCCEEEEECCHHHH----------HHHCCCCHHHCCCCHHHHHHH-HHHHHHHHCC----C T ss_conf 72233-----047-----666179972662777----------876588778705645899999-9999998556----6 Q ss_pred HHHCCCCCCCCC-CCCCEEEEECCCCCCCCCCCCEEEEEC-CCCHHHHHHHHHHHHHHCCCCCCCEEEEECC-CCCCCHH Q ss_conf 110011222233-665303542287544457874599933-6321579988865433114777712431134-6798989 Q gi|254780821|r 261 KECINAALQSVQ-WFGRLQKITEGPLLNKLPDHSEVWIDG-GHNPNAGLVVSKEISKLKGSSNKPFYLVIGM-VEGKKYG 337 (429) Q Consensus 261 ~~~I~~gL~~~~-~pGR~e~i~~~~~~~~~~~~~~viiD~-AHNp~s~~~l~~~l~~l~~~~~~~i~~I~G~-~~dKd~~ 337 (429) T Consensus 249 ~~~~~~~l~~F~gl~HRlE~v~~~-------~gv~fiNDSKATN~~At~~Al~~~------~~~~iilI~GG~~Kg~d~~ 315 (401) T PRK03815 249 DENDYERLNAFVIEAHKLEEFRDK-------QGRLWVDDSKATNIDATIQALKRY------KDKKIHLILGGDDKGVDLT 315 (401) T ss_pred CHHHHHHHHHCCCCCCCEEEEEEE-------CCEEEECCCCCCCHHHHHHHHHHC------CCCCEEEEECCCCCCCCHH T ss_conf 355899998489988853899984-------898996688789889999999837------6786799963765567879 Q ss_pred HHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHCCCCCCCEEEE Q ss_conf 9999888638889998422889984212789899999998549978996998999999998603588679999 Q gi|254780821|r 338 RYLEAFVELSPIVLSVSLICRGRERQSISITPKVLMQEAKKLGFQAMACSSMIEALSRVRKINEELPPPLILI 410 (429) Q Consensus 338 ~~l~~l~~~~d~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~eAi~~a~~~~~~~~~d~VLV 410 (429) T Consensus 316 ~L~~~i~~~~~~v~~~------------G~~~~~i~~~~~~~~~~~~~~~~l~eAv~~a~~~a--~~gdvVLL 374 (401) T PRK03815 316 PLFEELKNFDIEIYAI------------GSNAEKILALAKEFNIKAQKCEFLEKAVNEIKKVL--KQNEVALL 374 (401) T ss_pred HHHHHHHHHCEEEEEE------------CCCHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHC--CCCCEEEE T ss_conf 9999976405699998------------78999999998756984698286999999999857--89798998 |
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>TIGR01081 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase; InterPro: IPR005757 The tripeptide L-ananyl-gamma-D-glutamyl-meso-diaminopimelic acid is efficiently re-cycled during the formation of bacterial cell wall murein | Back alignment and domain information |
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Probab=99.96 E-value=8.5e-28 Score=190.87 Aligned_cols=322 Identities=20% Similarity=0.207 Sum_probs=198.3 Q ss_pred CEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEECCCCCCCEECCHHHHHHHHHHHHHCCCCCCCCHH Q ss_conf 83999458984799999999999978935141378411012008988847787155889999999998630477677957 Q gi|254780821|r 25 PVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNERFRLGVKGGRGRLVEDVELLDVFRRVRRVKSAQNLTIF 104 (429) Q Consensus 25 ~vI~VtGTnGKttt~~~i~~il~~~g~k~g~~tSPhl~~~~Eri~i~~~~~~g~~i~~~~~~~~~~~i~~~~~~~~~t~F 104 (429) T Consensus 104 WVlaV~GTHGKTTT~~M~~WvLE~~G~~pGF-------------liGGv~gNFg-vSA--------rLg~~pr~dp---- 157 (459) T TIGR01081 104 WVLAVAGTHGKTTTASMLAWVLEQCGLKPGF-------------LIGGVPGNFG-VSA--------RLGETPRQDP---- 157 (459) T ss_pred EEEEEECCCCCHHHHHHHHHHHHHCCCCCCC-------------EECCCCCCCC-EEE--------ECCCCCCCCC---- T ss_conf 2789507886046889999999863798872-------------6734245342-142--------0687756674---- Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH-------HCCCCCCCEEEEEECCCHHCCCCCCCHHHHHHH---HHHHCC Q ss_conf 8999999987411446247776444756764-------135677515898602500000027852344566---653113 Q gi|254780821|r 105 ELSIATALVLFSKYPADCAIIEVGLGGSLDA-------TNIIEKVAVSVITSISLDHEKILGNTVSAIAKD---KSGIIK 174 (429) Q Consensus 105 E~lt~~a~~~f~~~~~d~~vlE~GlGGr~Da-------Tnvi~~~~vavITnI~~DHle~LG~tle~Ia~e---Ka~I~k 174 (429) T Consensus 158 ------------~~~S~fFviEAD---EYD~AFFDKRSKFVHY~PRTlvlNNleFDHADIF-ddL~AI~~QFHhlvR~vP 221 (459) T TIGR01081 158 ------------NSQSPFFVIEAD---EYDTAFFDKRSKFVHYRPRTLVLNNLEFDHADIF-DDLKAIQRQFHHLVRTVP 221 (459) T ss_pred ------------CCCCCEEEEECC---CCCCCCCCCCCCEEECCCCEEEEECCCCCHHHHH-HHHHHHHHCCCEEEEEEC T ss_conf ------------546875799535---6565100254331202760014515554445578-768998740306889646 Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCC--CCCCC---CCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHH Q ss_conf 798331544471789889999862105665235763--21012---5852444310333344444432222111114699 Q gi|254780821|r 175 PGCPVVIGHQVYDEVREILVSKAEKMGCPYNVYGDD--FYAFE---KNKCLVYQDKISQTNLTVLGLVGEHQYINAATAI 249 (429) Q Consensus 175 ~~~~~v~~~~~~~~~~~~i~~~a~~~~~~~~~~~~~--~~~~~---~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~~Ai 249 (429) T Consensus 222 ~~G~i~~~-~~~~~l~~~l~~---GCWs~~e~~G~~~~W~A~~~~~D~S~f~Vll~G~~vg~VkW~lvG~HN~~NaL~aI 297 (459) T TIGR01081 222 GEGLILAP-ERDQSLKDTLAK---GCWSEQEFLGEQGEWQAEKITADASEFEVLLDGEKVGEVKWSLVGEHNMHNALMAI 297 (459) T ss_pred CCCEEECC-CHHHHHHHHHHH---CCCCCHHCCCCCCCHHHHHHCCCCHHHHHHHCCCEEEEEEEEECCCCCHHHHHHHH T ss_conf 88648435-014689999860---68720112467775057654045100022017843677653330460013589999 Q ss_pred HHHHHHHHCCHHHHCCCCCCCCC-CCCCEEEEECCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCCEEEEE Q ss_conf 99875320000110011222233-66530354228754445787459993363215799888654331147777124311 Q gi|254780821|r 250 CAVQMAGFTLEKECINAALQSVQ-WFGRLQKITEGPLLNKLPDHSEVWIDGGHNPNAGLVVSKEISKLKGSSNKPFYLVI 328 (429) Q Consensus 250 aa~~~lg~~i~~~~I~~gL~~~~-~pGR~e~i~~~~~~~~~~~~~~viiD~AHNp~s~~~l~~~l~~l~~~~~~~i~~I~ 328 (429) T Consensus 298 AAArHvGV~~~--~Ac~ALG~F~N~kRRlE~kG-------~~Ng~TVYDDFAHHP~AI~~Tl~~LR~kVG-G~~rIlAVL 367 (459) T TIGR01081 298 AAARHVGVAIE--DACEALGSFVNAKRRLELKG-------EANGVTVYDDFAHHPTAIEATLAALRDKVG-GGARILAVL 367 (459) T ss_pred HHHHCCCCCHH--HHHHHHCCCCCCCEEEEEEE-------EEEEEEEECCCCCCHHHHHHHHHHHHHHCC-CCCEEEEEE T ss_conf 87421676878--99987032001200156721-------131378732766786899999999875239-970699987 Q ss_pred C----CCC-CCCHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHCCCC Q ss_conf 3----467-98989999988863888999842288998421278989999999854997899699899999999860358 Q gi|254780821|r 329 G----MVE-GKKYGRYLEAFVELSPIVLSVSLICRGRERQSISITPKVLMQEAKKLGFQAMACSSMIEALSRVRKINEEL 403 (429) Q Consensus 329 G----~~~-dKd~~~~l~~l~~~~d~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~eAi~~a~~~~~~~ 403 (429) T Consensus 368 EPRSnTMKlG~~K~~-la~sL~~AD~Vf~~~-------p~---~~~W~V~e~~~~~~~p~~~~~~~D~~v~~ivk--~A~ 434 (459) T TIGR01081 368 EPRSNTMKLGVHKDD-LAPSLGRADEVFLLQ-------PE---QIPWEVAEVAEQCVQPANVSADLDELVAMIVK--EAQ 434 (459) T ss_pred CCCCCCCCCCCCHHH-HHHHHHHCCEEEEEC-------CC---CCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHH--HCC T ss_conf 787441003432556-667666003565316-------89---88705999998602402110107899999996--058 Q ss_pred CCCEEEEE--CCHH Q ss_conf 86799994--9779 Q gi|254780821|r 404 PPPLILIA--GSLY 415 (429) Q Consensus 404 ~~d~VLV~--GS~y 415 (429) T Consensus 435 ~gD~ILVMSNGgFg 448 (459) T TIGR01081 435 PGDHILVMSNGGFG 448 (459) T ss_pred CCCEEEEEECCCCC T ss_conf 88758997468864 |
UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase is an essential enzyme in this process which links the tripeptide to UDP-N-acetylmuramate.; GO: 0016874 ligase activity, 0007047 cell wall organization and biogenesis. |
>pfam08245 Mur_ligase_M Mur ligase middle domain | Back alignment and domain information |
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Probab=99.96 E-value=8.2e-29 Score=197.16 Aligned_cols=174 Identities=27% Similarity=0.299 Sum_probs=116.3 Q ss_pred EECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEECCCCCCCEECCHHHHHHHHHHHHHCCCCCCCCHHHHHH Q ss_conf 94589847999999999999789351413784110120089888477871558899999999986304776779578999 Q gi|254780821|r 29 IGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNERFRLGVKGGRGRLVEDVELLDVFRRVRRVKSAQNLTIFELSI 108 (429) Q Consensus 29 VtGTnGKttt~~~i~~il~~~g~k~g~~tSPhl~~~~Eri~i~~~~~~g~~i~~~~~~~~~~~i~~~~~~~~~t~FE~lt 108 (429) T Consensus 1 VTGT~GKTTt~~ml~~iL~~~g~~~~~~--------------g------~~~~~ig~----------------------- 37 (188) T pfam08245 1 ITGTNGKTTTTELIAALLSAAGGVVGTG--------------G------NTNNAIGL----------------------- 37 (188) T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCEEEE--------------C------CCCCHHHH----------------------- T ss_conf 9375868999999999998389989983--------------8------84745779----------------------- Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHH--HCCCCCCCEEEEEECCCHHCCCCCCCHHHHHHHHHHHCC---CCCCCCCCC Q ss_conf 999987411446247776444756764--135677515898602500000027852344566653113---798331544 Q gi|254780821|r 109 ATALVLFSKYPADCAIIEVGLGGSLDA--TNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGIIK---PGCPVVIGH 183 (429) Q Consensus 109 ~~a~~~f~~~~~d~~vlE~GlGGr~Da--Tnvi~~~~vavITnI~~DHle~LG~tle~Ia~eKa~I~k---~~~~~v~~~ 183 (429) T Consensus 38 ~~~~~~~~~~~~~~~V~E~~~~~~~~~~l~~-~~~P~iaviTNi~~DHld~~~-s~e~~~~~K~~i~~~~~~~g~~v~n~ 115 (188) T pfam08245 38 PLLLALMERKGADYAVLELSSFGLGEGRLEG-LAKPDIAVITNISPDHLDYHG-TMENYAAAKAEIFEGLPEDGIAVINA 115 (188) T ss_pred HHHHHHHHHCCCCEEEEEECCCCCCHHHHCC-CCCCCEEEEECCHHHHHHHHC-CHHHHHHHHHHHHHCCCCCCEEEEEC T ss_conf 9999766646996899983277710765527-778999999457655646621-79999999999997299999999989 Q ss_pred CCCHHHHHHHHHHHHHCCCCCCCCCCCC----C-----CCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHH Q ss_conf 4717898899998621056652357632----1-----0125852444310333344444432222111114699998 Q gi|254780821|r 184 QVYDEVREILVSKAEKMGCPYNVYGDDF----Y-----AFEKNKCLVYQDKISQTNLTVLGLVGEHQYINAATAICAV 252 (429) Q Consensus 184 ~~~~~~~~~i~~~a~~~~~~~~~~~~~~----~-----~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~~Aiaa~ 252 (429) T Consensus 116 D-d~~~~~~~----~~~~~~~~t~g~~~~~d~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~l~G~HNv~NalaAia~A 188 (188) T pfam08245 116 D-DPELAKRL----KNAGAKVITFGLENEADDRAANIYVSSEGGKIVLFTVPGGELEISLPLPGRHNVYNALAALAAA 188 (188) T ss_pred C-CHHHHHHH----HHCCCCEEEEECCCCCCEEEEEEEECCCCCEEEEEECCCEEEEEEECCCCHHHHHHHHHHHHHC T ss_conf 8-88899999----8669846998568765604467899589968999962993899998866399999999999959 |
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>pfam02875 Mur_ligase_C Mur ligase family, glutamate ligase domain | Back alignment and domain information |
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Probab=99.43 E-value=9.1e-13 Score=98.00 Aligned_cols=77 Identities=22% Similarity=0.178 Sum_probs=60.5 Q ss_pred CCCCEEEEECCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHH---HHHHHHHHHCCE Q ss_conf 66530354228754445787459993363215799888654331147777124311346798989---999988863888 Q gi|254780821|r 273 WFGRLQKITEGPLLNKLPDHSEVWIDGGHNPNAGLVVSKEISKLKGSSNKPFYLVIGMVEGKKYG---RYLEAFVELSPI 349 (429) Q Consensus 273 ~pGR~e~i~~~~~~~~~~~~~~viiD~AHNp~s~~~l~~~l~~l~~~~~~~i~~I~G~~~dKd~~---~~l~~l~~~~d~ 349 (429) T Consensus 1 vpGR~e~i~~-------~~~~~vi~DyaHnp~~~~a~l~~~~~~---~~~r~i~V~G~~g~r~~~~r~~~g~~a~~~ad~ 70 (87) T pfam02875 1 VPGRLEVVGE-------NNGVLVIDDYAHNPDALEAALQALKEL---FDGRLILVFGAGGDRDAEFHALLGALAAALADV 70 (87) T ss_pred CCCCCEEEEC-------CCCCEEEEECCCCHHHHHHHHHHHHHC---CCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCE T ss_conf 9997389865-------899789996789969999999999862---688789999998888678999999999971999 Q ss_pred EEEEEECCCC Q ss_conf 9998422889 Q gi|254780821|r 350 VLSVSLICRG 359 (429) Q Consensus 350 i~~~~~~~~~ 359 (429) T Consensus 71 viit~~~p~~ 80 (87) T pfam02875 71 VILTGDYPRA 80 (87) T ss_pred EEECCCCCCC T ss_conf 9999988999 |
This family contains a number of related ligase enzymes which have EC numbers 6.3.2.*. This family includes: MurC, MurD, MurE, MurF, Mpl and FolC. MurC, MurD, Mure and MurF catalyse consecutive steps in the synthesis of peptidoglycan. Peptidoglycan consists of a sheet of two sugar derivatives, with one of these N-acetylmuramic acid attaching to a small pentapeptide. The pentapeptide is is made of L-alanine, D-glutamic acid, Meso-diaminopimelic acid and D-alanyl alanine. The peptide moiety is synthesized by successively adding these amino acids to UDP-N-acetylmuramic acid. MurC transfers the L-alanine, MurD transfers the D-glutamate, MurE transfers the diaminopimelic acid, and MurF transfers the D-alanyl alanine. This family also includes Folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate. |
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] | Back alignment and domain information |
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Probab=98.03 E-value=9.9e-05 Score=48.32 Aligned_cols=154 Identities=23% Similarity=0.280 Sum_probs=89.4 Q ss_pred HHHHCCCHHHHCCCEEEEECCC--CHHHHHHHHHHHHHHCCCCEEEE----ECCCCCEEEEEEEECCCCCCCEECCHHH- Q ss_conf 9987299588359839994589--84799999999999978935141----3784110120089888477871558899- Q gi|254780821|r 12 LLEDLGRPQDRLPPVIHIGGTN--GKGSVASFSQRLLETSGLSVHVH----TSPHLIRWNERFRLGVKGGRGRLVEDVE- 84 (429) Q Consensus 12 ll~~lg~P~~~~~~vI~VtGTn--GKttt~~~i~~il~~~g~k~g~~----tSPhl~~~~Eri~i~~~~~~g~~i~~~~- 84 (429) T Consensus 44 l~p~tG~a-----~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~--------------TGGsiLGDRiR 104 (323) T COG1703 44 LYPRTGNA-----HVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPF--------------TGGSILGDRIR 104 (323) T ss_pred HHHCCCCC-----CEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCC--------------CCCCCCCCHHH T ss_conf 73117998-----378731799886688999999999977967899998899998--------------78530120766 Q ss_pred HHHHH----HHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHH-HHH-HHHHHHCCCCCCCEEEEEECCCHHCCCC Q ss_conf 99999----99863047767795789999999874114462477764-447-5676413567751589860250000002 Q gi|254780821|r 85 LLDVF----RRVRRVKSAQNLTIFELSIATALVLFSKYPADCAIIEV-GLG-GSLDATNIIEKVAVSVITSISLDHEKIL 158 (429) Q Consensus 85 ~~~~~----~~i~~~~~~~~~t~FE~lt~~a~~~f~~~~~d~~vlE~-GlG-Gr~DaTnvi~~~~vavITnI~~DHle~L 158 (429) T Consensus 105 M~~~~~~~~vFiRs~~srG~lGGlS~at~~~i~~ldAaG~DvIIVETVGvGQsev~I~~---~aDt~~~v~~pg-----~ 176 (323) T COG1703 105 MQRLAVDPGVFIRSSPSRGTLGGLSRATREAIKLLDAAGYDVIIVETVGVGQSEVDIAN---MADTFLVVMIPG-----A 176 (323) T ss_pred HHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHH---HCCEEEEEECCC-----C T ss_conf 77644699817842687765101668899999999861898899981478841557765---216689996578-----8 Q ss_pred CCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH Q ss_conf 7852344566653113798331544471789889999 Q gi|254780821|r 159 GNTVSAIAKDKSGIIKPGCPVVIGHQVYDEVREILVS 195 (429) Q Consensus 159 G~tle~Ia~eKa~I~k~~~~~v~~~~~~~~~~~~i~~ 195 (429) T Consensus 177 GD~~Q~---iK~GimEiaDi~vINKaD~~~A~~a~r~ 210 (323) T COG1703 177 GDDLQG---IKAGIMEIADIIVINKADRKGAEKAARE 210 (323) T ss_pred CCHHHH---HHHHHHHHHHEEEEECCCHHHHHHHHHH T ss_conf 827888---8741465403356725672658999999 |
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>TIGR00750 lao LAO/AO transport system ATPase; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components | Back alignment and domain information |
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Probab=97.96 E-value=5.8e-05 Score=49.74 Aligned_cols=150 Identities=22% Similarity=0.341 Sum_probs=95.4 Q ss_pred HHHHHHHCCCHHHHCCCEEEEECC--CCHHHHHHHHHHHHHHCCCCEEEE----ECCCCCEEEEEEEECCCCCCCEECCH Q ss_conf 999998729958835983999458--984799999999999978935141----37841101200898884778715588 Q gi|254780821|r 9 MGYLLEDLGRPQDRLPPVIHIGGT--NGKGSVASFSQRLLETSGLSVHVH----TSPHLIRWNERFRLGVKGGRGRLVED 82 (429) Q Consensus 9 ~~~ll~~lg~P~~~~~~vI~VtGT--nGKttt~~~i~~il~~~g~k~g~~----tSPhl~~~~Eri~i~~~~~~g~~i~~ 82 (429) T Consensus 28 l~~i~p~~GnA-----~~vG~TG~PGaGKSTl~~~l~~~lrRrG~~VaViAvDP~SPf--------------TGGsiLGD 88 (333) T TIGR00750 28 LERILPKTGNA-----HVVGITGVPGAGKSTLVEKLIMELRRRGLKVAVIAVDPSSPF--------------TGGSILGD 88 (333) T ss_pred HHHHHHHCCCC-----EEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCC--------------CCHHHHHH T ss_conf 99862432790-----787664688885777999998999765976899988797597--------------55145456 Q ss_pred H-HHHHHH--HHHHHCCCCCCCCHH-------------HHHHHHHHHHHHCCCCCHHHHHH-HHH-HHHHHHCCCCCCCE Q ss_conf 9-999999--998630477677957-------------89999999874114462477764-447-56764135677515 Q gi|254780821|r 83 V-ELLDVF--RRVRRVKSAQNLTIF-------------ELSIATALVLFSKYPADCAIIEV-GLG-GSLDATNIIEKVAV 144 (429) Q Consensus 83 ~-~~~~~~--~~i~~~~~~~~~t~F-------------E~lt~~a~~~f~~~~~d~~vlE~-GlG-Gr~DaTnvi~~~~v 144 (429) T Consensus 89 r~Rm~~~asrkqlW-----~dPg~FIRs~ptrG~lGGls~at~~~~~lldA~G~DVI~vETVGVGQSEVdi~~---~aDT 160 (333) T TIGR00750 89 RLRMQRLASRKQLW-----TDPGVFIRSMPTRGSLGGLSKATRELVKLLDAAGYDVILVETVGVGQSEVDIIN---MADT 160 (333) T ss_pred HHHHHHHHHHHHHH-----CCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHH---HHCE T ss_conf 88775442222332-----289856767766675257879999999999863898799984157524878873---4150 Q ss_pred EEEEECCCHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH Q ss_conf 8986025000000278523445666531137983315444717898899 Q gi|254780821|r 145 SVITSISLDHEKILGNTVSAIAKDKSGIIKPGCPVVIGHQVYDEVREIL 193 (429) Q Consensus 145 avITnI~~DHle~LG~tle~Ia~eKa~I~k~~~~~v~~~~~~~~~~~~i 193 (429) T Consensus 161 ~v~v~~pg-----~GDd~Q~i---KaG~mEiaDI~VVNKaD~~~a~~v~ 201 (333) T TIGR00750 161 FVVVTIPG-----TGDDVQGI---KAGVMEIADIYVVNKADGEGAEEVK 201 (333) T ss_pred EEEEECCC-----CCCHHHHH---HHHHHEEEEEEEEECCCCCCHHHHH T ss_conf 58985488-----78346666---5443023248788168876658999 |
In Escherichia coli K-12, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.. |
>pfam03308 ArgK ArgK protein | Back alignment and domain information |
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Probab=97.47 E-value=0.00067 Score=43.21 Aligned_cols=158 Identities=21% Similarity=0.232 Sum_probs=84.1 Q ss_pred HHHHHHHHHC-CCHHHHCCCEEEEECCC--CHHHHHHHHHHHHHHCCCCEEEEE----CCCCCEEEEEEEECCCCCCCEE Q ss_conf 9999999872-99588359839994589--847999999999999789351413----7841101200898884778715 Q gi|254780821|r 7 LKMGYLLEDL-GRPQDRLPPVIHIGGTN--GKGSVASFSQRLLETSGLSVHVHT----SPHLIRWNERFRLGVKGGRGRL 79 (429) Q Consensus 7 ~r~~~ll~~l-g~P~~~~~~vI~VtGTn--GKttt~~~i~~il~~~g~k~g~~t----SPhl~~~~Eri~i~~~~~~g~~ 79 (429) T Consensus 13 ~~~~~ll~~~~~~~g~a--~~iGiTG~PGaGKStli~~l~~~~~~~g~~vaVlAvDPSS~~--------------sgGai 76 (267) T pfam03308 13 PEARELLRRLMPLTGRA--HRVGITGVPGAGKSTLIEALGMELRRRGHRVAVLAVDPSSPF--------------TGGSI 76 (267) T ss_pred HHHHHHHHHHHHHCCCC--EEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCC--------------CCCCC T ss_conf 77999999987435995--599876899887999999999999968986899997899988--------------88630 Q ss_pred CCHH-HHHHHHH----HHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHH-HHH-HHHHHHCCCCCCCEEEEEECCC Q ss_conf 5889-9999999----9863047767795789999999874114462477764-447-5676413567751589860250 Q gi|254780821|r 80 VEDV-ELLDVFR----RVRRVKSAQNLTIFELSIATALVLFSKYPADCAIIEV-GLG-GSLDATNIIEKVAVSVITSISL 152 (429) Q Consensus 80 i~~~-~~~~~~~----~i~~~~~~~~~t~FE~lt~~a~~~f~~~~~d~~vlE~-GlG-Gr~DaTnvi~~~~vavITnI~~ 152 (429) T Consensus 77 LGDr~RM~~~~~~~~vfiRs~~srg~lGGls~~t~~~i~lleaaGfD~IivETVGVGQsE~~v~~~a---D~~llv~-~P 152 (267) T pfam03308 77 LGDRTRMQRLAVDPGAFIRSSPSRGALGGLSRATREAILLLDAAGFDVIIIETVGVGQSEVDIANMA---DTFVLVT-IP 152 (267) T ss_pred CCCHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHC---CEEEEEE-CC T ss_conf 0107777650589985886457788888714769999999997799999992477775303555415---7689995-58 Q ss_pred HHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHH Q ss_conf 000002785234456665311379833154447178988 Q gi|254780821|r 153 DHEKILGNTVSAIAKDKSGIIKPGCPVVIGHQVYDEVRE 191 (429) Q Consensus 153 DHle~LG~tle~Ia~eKa~I~k~~~~~v~~~~~~~~~~~ 191 (429) T Consensus 153 g----~GDeiQ---~iKaGImEiaDi~vVNKaD~~~A~~ 184 (267) T pfam03308 153 G----GGDDLQ---GIKAGLMEIADIYVVNKADLPGAER 184 (267) T ss_pred C----CCHHHH---HHHHHHHHHCCEEEEECCCHHHHHH T ss_conf 8----760888---9875376535489996676476999 |
The ArgK protein acts as an ATPase enzyme and as a kinase, and phosphorylates periplasmic binding proteins involved in the LAO (lysine, arginine, ornithine)/AO transport systems. |
>PRK09435 arginine/ornithine transport system ATPase; Provisional | Back alignment and domain information |
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Probab=97.37 E-value=0.0012 Score=41.70 Aligned_cols=152 Identities=20% Similarity=0.217 Sum_probs=82.0 Q ss_pred HHHHHHHHHC-CCHHHHCCCEEEEECCC--CHHHHHHHHHHHHHHCCCCEEEE----ECCCCCEEEEEEEECCCCCCCEE Q ss_conf 9999999872-99588359839994589--84799999999999978935141----37841101200898884778715 Q gi|254780821|r 7 LKMGYLLEDL-GRPQDRLPPVIHIGGTN--GKGSVASFSQRLLETSGLSVHVH----TSPHLIRWNERFRLGVKGGRGRL 79 (429) Q Consensus 7 ~r~~~ll~~l-g~P~~~~~~vI~VtGTn--GKttt~~~i~~il~~~g~k~g~~----tSPhl~~~~Eri~i~~~~~~g~~ 79 (429) T Consensus 33 ~~~~~ll~~l~~~~g~a--~~iGiTG~pG~GKStli~~l~~~~~~~g~~v~vlavDPsS~~--------------sgGai 96 (325) T PRK09435 33 ALAQELLDALLPHTGNA--LRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTR--------------TGGSI 96 (325) T ss_pred HHHHHHHHHHHHCCCCC--EEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCC--------------CCCCH T ss_conf 99999999863017982--599742799986889999999999967985899997899998--------------88610 Q ss_pred CCHHH-HHHHHH----HHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHH-HHH-HHHHHHCCCCCCCEEEEEECCC Q ss_conf 58899-999999----9863047767795789999999874114462477764-447-5676413567751589860250 Q gi|254780821|r 80 VEDVE-LLDVFR----RVRRVKSAQNLTIFELSIATALVLFSKYPADCAIIEV-GLG-GSLDATNIIEKVAVSVITSISL 152 (429) Q Consensus 80 i~~~~-~~~~~~----~i~~~~~~~~~t~FE~lt~~a~~~f~~~~~d~~vlE~-GlG-Gr~DaTnvi~~~~vavITnI~~ 152 (429) T Consensus 97 LGDr~Rm~~~~~~~~~fiRs~~srg~lgg~~~~~~~~~~~~~a~g~d~i~iETvGvGQ~e~~v~~~~---d~~~~~-~~p 172 (325) T PRK09435 97 LGDKTRMERLSRHPNAFIRPSPSSGTLGGVARKTRETMLLCEAAGFDVILVETVGVGQSETAVAGMV---DFFLLL-QLP 172 (325) T ss_pred HHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHC---CEEEEE-ECC T ss_conf 1038888761479984884067788867733549999999997799989997067771488998742---668888-358 Q ss_pred HHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC Q ss_conf 000002785234456665311379833154447 Q gi|254780821|r 153 DHEKILGNTVSAIAKDKSGIIKPGCPVVIGHQV 185 (429) Q Consensus 153 DHle~LG~tle~Ia~eKa~I~k~~~~~v~~~~~ 185 (429) T Consensus 173 ~----~GD~~Q---~~K~GImEiaDi~vVNKaD 198 (325) T PRK09435 173 G----AGDELQ---GIKKGIMELADLIVINKAD 198 (325) T ss_pred C----CCCHHH---HHHHHHHHHCCEEEEECCC T ss_conf 8----760889---9886577504268997767 |
|
>cd03114 ArgK-like The function of this protein family is unkown | Back alignment and domain information |
---|
Probab=96.93 E-value=0.0025 Score=39.68 Aligned_cols=135 Identities=22% Similarity=0.339 Sum_probs=69.8 Q ss_pred EEEEECCC--CHHHHHHHHHHHHHHCCCCEEEEE----CCCC--CEEEEEEEECCCC-CCCEECCHHHHHHHHHHHHHCC Q ss_conf 39994589--847999999999999789351413----7841--1012008988847-7871558899999999986304 Q gi|254780821|r 26 VIHIGGTN--GKGSVASFSQRLLETSGLSVHVHT----SPHL--IRWNERFRLGVKG-GRGRLVEDVELLDVFRRVRRVK 96 (429) Q Consensus 26 vI~VtGTn--GKttt~~~i~~il~~~g~k~g~~t----SPhl--~~~~Eri~i~~~~-~~g~~i~~~~~~~~~~~i~~~~ 96 (429) T Consensus 1 viGitG~pGaGKStLi~~l~~~~~~~g~~VaVlavDPsS~~sgGalLGDRiRm~~~~~~~~vfi------------Rs~a 68 (148) T cd03114 1 VIGITGVPGAGKSTLIDALITALRARGKRVAVLAIDPSSPFSGGAILGDRIRMERHASDPGVFI------------RSLA 68 (148) T ss_pred CEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCEEE------------EECC T ss_conf 9762589978789999999999997898379999688878668620323545344157998368------------6346 Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCHHHHHH-HHH-HHHHHHCCCCCCCEEEEEECCCHHCCCCCCCHHHHHHHHHHHCC Q ss_conf 7767795789999999874114462477764-447-56764135677515898602500000027852344566653113 Q gi|254780821|r 97 SAQNLTIFELSIATALVLFSKYPADCAIIEV-GLG-GSLDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGIIK 174 (429) Q Consensus 97 ~~~~~t~FE~lt~~a~~~f~~~~~d~~vlE~-GlG-Gr~DaTnvi~~~~vavITnI~~DHle~LG~tle~Ia~eKa~I~k 174 (429) T Consensus 69 trg~~ggla~~~~~~i~~l~~~g~D~IiIETvGvGQse~~i~~~a---D~~i~-v~~p~----~GD~i---Q~~K~gi~e 137 (148) T cd03114 69 TRGFLGGLSRATPEVIRVLDAAGFDVIIVETVGVGQSEVDIASMA---DTTVV-VMAPG----AGDDI---QAIKAGIME 137 (148) T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHC---CEEEE-EECCC----CCCHH---HHCCCCHHH T ss_conf 666542046889999999997599989997487775602655435---66999-96368----87377---611228521 Q ss_pred CCCCCCCCC Q ss_conf 798331544 Q gi|254780821|r 175 PGCPVVIGH 183 (429) Q Consensus 175 ~~~~~v~~~ 183 (429) T Consensus 138 ~aDl~vvNK 146 (148) T cd03114 138 IADIVVVNK 146 (148) T ss_pred CCCEEEEEC T ss_conf 246999937 |
The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems. |
>TIGR03172 probable selenium-dependent hydroxylase accessory protein YqeC | Back alignment and domain information |
---|
Probab=97.39 E-value=0.00026 Score=45.70 Aligned_cols=39 Identities=26% Similarity=0.260 Sum_probs=35.1 Q ss_pred EEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCEE Q ss_conf 399945898479999999999997893514137841101 Q gi|254780821|r 26 VIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRW 64 (429) Q Consensus 26 vI~VtGTnGKttt~~~i~~il~~~g~k~g~~tSPhl~~~ 64 (429) T Consensus 1 VIs~VGaGGKTS~m~~LA~e~~~~G~~VlvTTTT~m~~P 39 (232) T TIGR03172 1 VIAFVGAGGKTSTMFWLAAEYRKEGYRVLVTTTTRMFLP 39 (232) T ss_pred CEEEECCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCC T ss_conf 989988987999999999999876990999889665678 |
This uncharacterized protein family includes YqeC from Escherichia coli. A phylogenetic profiling analysis shows correlation with SelD, the selenium donor protein, even in species where SelD contributes to neither selenocysteine nor selenouridine biosynthesis. Instead, this family, and families TIGR03309 and TIGR03310 appear to mark selenium-dependent molybdenum hydroxylase maturation systems. |
>TIGR03453 partition_RepA plasmid partitioning protein RepA | Back alignment and domain information |
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Probab=96.97 E-value=0.0012 Score=41.71 Aligned_cols=51 Identities=22% Similarity=0.324 Sum_probs=40.4 Q ss_pred CCHHHHHHHHHHCC----------CHHHHCCCEEEEE---CCCCHHHHHHHHHHHHHHCCCCEEE Q ss_conf 88899999998729----------9588359839994---5898479999999999997893514 Q gi|254780821|r 4 DSLLKMGYLLEDLG----------RPQDRLPPVIHIG---GTNGKGSVASFSQRLLETSGLSVHV 55 (429) Q Consensus 4 ~~l~r~~~ll~~lg----------~P~~~~~~vI~Vt---GTnGKttt~~~i~~il~~~g~k~g~ 55 (429) T Consensus 75 ~ei~~lR~~l~~~~~~~~~~~p~R~~g~~~-~VIav~N~KGGVGKTTtav~LA~~LA~~G~RVLv 138 (387) T TIGR03453 75 EQINELRRHLAQRPREALRYLPHRRGGEHL-QVIAVTNFKGGSGKTTTSAHLAQYLALRGYRVLA 138 (387) T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCC-EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEE T ss_conf 999999999986244555458999999988-0899978887656999999999999977998899 |
Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error. |
>PRK13869 plasmid-partitioning protein RepA; Provisional | Back alignment and domain information |
---|
Probab=96.77 E-value=0.0029 Score=39.22 Aligned_cols=50 Identities=24% Similarity=0.387 Sum_probs=37.7 Q ss_pred CHHHHHHHHHHC--C----------CHHHHCCCEEEEE---CCCCHHHHHHHHHHHHHHCCCCEEE Q ss_conf 889999999872--9----------9588359839994---5898479999999999997893514 Q gi|254780821|r 5 SLLKMGYLLEDL--G----------RPQDRLPPVIHIG---GTNGKGSVASFSQRLLETSGLSVHV 55 (429) Q Consensus 5 ~l~r~~~ll~~l--g----------~P~~~~~~vI~Vt---GTnGKttt~~~i~~il~~~g~k~g~ 55 (429) T Consensus 91 ~i~~lR~~l~~~~~~~~~~~~~p~R~~~~~~-kVIaVaN~KGGVGKTTtav~LA~~LA~~G~RVLl 155 (405) T PRK13869 91 QINEIRGMLAGSTRGRESIDFVPHRRGSEHL-QVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLA 155 (405) T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC-EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEE T ss_conf 9999999997405555543458999999998-2899978887765999999999999977998899 |
|
>PHA02519 plasmid partition protein SopA; Reviewed | Back alignment and domain information |
---|
Probab=96.31 E-value=0.011 Score=35.71 Aligned_cols=52 Identities=23% Similarity=0.326 Sum_probs=41.1 Q ss_pred CCHHHHHHHHHHCCCHHHH----CCCEEEEE---CCCCHHHHHHHHHHHHHHCCCCEEE Q ss_conf 8889999999872995883----59839994---5898479999999999997893514 Q gi|254780821|r 4 DSLLKMGYLLEDLGRPQDR----LPPVIHIG---GTNGKGSVASFSQRLLETSGLSVHV 55 (429) Q Consensus 4 ~~l~r~~~ll~~lg~P~~~----~~~vI~Vt---GTnGKttt~~~i~~il~~~g~k~g~ 55 (429) T Consensus 82 ytl~~i~~lR~~l~~~~~rp~~~~~~VIAVaN~KGGVGKTTTavnLA~~LAl~G~RVL~ 140 (387) T PHA02519 82 YTIDQISHMRDHFGNPNQRPDDKNPVVLAVMSHKGGVYKTSSAVHTAQWLALQGHRVLL 140 (387) T ss_pred CCHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEE T ss_conf 57999999999864566798988752899861688776999999999999976996899 |
|
>PRK05439 pantothenate kinase; Provisional | Back alignment and domain information |
---|
Probab=95.90 E-value=0.027 Score=33.27 Aligned_cols=43 Identities=33% Similarity=0.430 Sum_probs=33.3 Q ss_pred HCCCHHHHCCCEEEEECC--CCHHHHHHHHHHHHHHC--CCCEEEEE Q ss_conf 729958835983999458--98479999999999997--89351413 Q gi|254780821|r 15 DLGRPQDRLPPVIHIGGT--NGKGSVASFSQRLLETS--GLSVHVHT 57 (429) Q Consensus 15 ~lg~P~~~~~~vI~VtGT--nGKttt~~~i~~il~~~--g~k~g~~t 57 (429) T Consensus 77 FL~~~~~~~PfIIGIaGSVAVGKSTtARlLq~LL~r~~~~~~V~LvT 123 (312) T PRK05439 77 FLGKNGQKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVDLVT 123 (312) T ss_pred HCCCCCCCCCEEEEEEEEEECCHHHHHHHHHHHHHCCCCCCCEEEEE T ss_conf 60799889998999762010262889999999995078999458993 |
|
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase | Back alignment and domain information |
---|
Probab=95.68 E-value=0.02 Score=34.09 Aligned_cols=31 Identities=26% Similarity=0.262 Sum_probs=28.0 Q ss_pred CEEEEECCC---CHHHHHHHHHHHHHHCCCCEEEE Q ss_conf 839994589---84799999999999978935141 Q gi|254780821|r 25 PVIHIGGTN---GKGSVASFSQRLLETSGLSVHVH 56 (429) Q Consensus 25 ~vI~VtGTn---GKttt~~~i~~il~~~g~k~g~~ 56 (429) T Consensus 2 r~Iai~G-KGGVGKTTtavNLA~aLa~~GkkVlli 35 (270) T cd02040 2 RQIAIYG-KGGIGKSTTTQNLSAALAEMGKKVMIV 35 (270) T ss_pred CEEEEEC-CCCCCHHHHHHHHHHHHHHCCCEEEEE T ss_conf 5899979-985778999999999999879949998 |
Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia. |
>PRK00090 bioD dithiobiotin synthetase; Reviewed | Back alignment and domain information |
---|
Probab=95.17 E-value=0.046 Score=31.82 Aligned_cols=32 Identities=28% Similarity=0.376 Sum_probs=28.1 Q ss_pred EEEEECCC---CHHHHHHHHHHHHHHCCCCEEEEE Q ss_conf 39994589---847999999999999789351413 Q gi|254780821|r 26 VIHIGGTN---GKGSVASFSQRLLETSGLSVHVHT 57 (429) Q Consensus 26 vI~VtGTn---GKttt~~~i~~il~~~g~k~g~~t 57 (429) T Consensus 1 ~ifI~GT~T~vGKT~vt~~L~~~l~~~G~~v~~~K 35 (223) T PRK00090 1 VLFVTGTDTGVGKTVVTAALAQALREQGYRVAGYK 35 (223) T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEC T ss_conf 98998689997699999999999997899489975 |
|
>PRK00771 signal recognition particle protein Srp54; Provisional | Back alignment and domain information |
---|
Probab=94.93 E-value=0.27 Score=27.05 Aligned_cols=46 Identities=30% Similarity=0.385 Sum_probs=33.9 Q ss_pred HHHHHCCCH---HHHCCCEEEEECCC--CHHHHHHHHHHHHHHCCCCEEEEE Q ss_conf 999872995---88359839994589--847999999999999789351413 Q gi|254780821|r 11 YLLEDLGRP---QDRLPPVIHIGGTN--GKGSVASFSQRLLETSGLSVHVHT 57 (429) Q Consensus 11 ~ll~~lg~P---~~~~~~vI~VtGTn--GKttt~~~i~~il~~~g~k~g~~t 57 (429) T Consensus 82 eL~~llg~~~~~~~k-P~Vim~vGlqGsGKTTT~aKLA~~~kk~g~kv~lva 132 (433) T PRK00771 82 ELVKLLGEEAEILLK-PQTILLVGLQGSGKTTTAAKLARYFQKKGLKVGVIC 132 (433) T ss_pred HHHHHHCCCCCCCCC-CEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEE T ss_conf 999984967656689-858999737889789999999999997799467850 |
|
>PRK13705 plasmid-partitioning protein SopA; Provisional | Back alignment and domain information |
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Probab=94.91 E-value=0.083 Score=30.26 Aligned_cols=52 Identities=27% Similarity=0.400 Sum_probs=38.4 Q ss_pred CCHHHHHHHHHHCCC----HHHHCCCEEEEE---CCCCHHHHHHHHHHHHHHCCCCEEE Q ss_conf 888999999987299----588359839994---5898479999999999997893514 Q gi|254780821|r 4 DSLLKMGYLLEDLGR----PQDRLPPVIHIG---GTNGKGSVASFSQRLLETSGLSVHV 55 (429) Q Consensus 4 ~~l~r~~~ll~~lg~----P~~~~~~vI~Vt---GTnGKttt~~~i~~il~~~g~k~g~ 55 (429) T Consensus 82 Ytl~~i~~lR~~~~~~p~R~~g~~~~VIAVaNqKGGvGKTTTavnLA~~LAl~G~RVLl 140 (388) T PRK13705 82 YTIEQINHMRDVFGTRLRRAEDEFPPVIGVAAHKGGVYKTSVSVHLAQDLALKGLRVLL 140 (388) T ss_pred CCHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEE T ss_conf 06999999999964388999999872899952788855999999999999977990899 |
|
>PRK06761 hypothetical protein; Provisional | Back alignment and domain information |
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Probab=94.57 E-value=0.21 Score=27.72 Aligned_cols=29 Identities=21% Similarity=0.298 Sum_probs=24.8 Q ss_pred EEECCCCHHHHHHHHHHHHHHCCCCEEEEE Q ss_conf 994589847999999999999789351413 Q gi|254780821|r 28 HIGGTNGKGSVASFSQRLLETSGLSVHVHT 57 (429) Q Consensus 28 ~VtGTnGKttt~~~i~~il~~~g~k~g~~t 57 (429) T Consensus 9 GlPGs-GKSTta~~l~d~L~~~g~~v~~~~ 37 (281) T PRK06761 9 GLPGF-GKSTTAHLLNDKLSQLKIEVELFV 37 (281) T ss_pred CCCCC-CHHHHHHHHHHHHHHCCCCEEEEE T ss_conf 68999-801499999999986698538995 |
|
>PRK10867 signal recognition particle protein; Provisional | Back alignment and domain information |
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Probab=94.18 E-value=0.27 Score=27.07 Aligned_cols=45 Identities=24% Similarity=0.393 Sum_probs=30.7 Q ss_pred HHHHHCCCHHHHC------CCEEEEECCCC--HHHHHHHHHHHHHH-CCCCEEE Q ss_conf 9998729958835------98399945898--47999999999999-7893514 Q gi|254780821|r 11 YLLEDLGRPQDRL------PPVIHIGGTNG--KGSVASFSQRLLET-SGLSVHV 55 (429) Q Consensus 11 ~ll~~lg~P~~~~------~~vI~VtGTnG--Kttt~~~i~~il~~-~g~k~g~ 55 (429) T Consensus 81 eL~~lLg~~~~~l~~~~~~p~VIm~vGLqGsGKTTT~aKLA~~lk~k~~k~vll 134 (453) T PRK10867 81 ELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLV 134 (453) T ss_pred HHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE T ss_conf 999985888766633789996999974688851858999999999738983798 |
|
>PRK11670 putative ATPase; Provisional | Back alignment and domain information |
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Probab=94.14 E-value=0.094 Score=29.91 Aligned_cols=34 Identities=26% Similarity=0.314 Sum_probs=29.0 Q ss_pred CCCEEEEE---CCCCHHHHHHHHHHHHHHCCCCEEEE Q ss_conf 59839994---58984799999999999978935141 Q gi|254780821|r 23 LPPVIHIG---GTNGKGSVASFSQRLLETSGLSVHVH 56 (429) Q Consensus 23 ~~~vI~Vt---GTnGKttt~~~i~~il~~~g~k~g~~ 56 (429) T Consensus 106 v~~vIAVaSGKGGVGKSTvavNLA~ALA~~G~kVgll 142 (369) T PRK11670 106 VKNIIAVSSGKGGVGKSSTAVNLALALAAEGAKVGIL 142 (369) T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE T ss_conf 6889999858998889999999999999669937898 |
|
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain | Back alignment and domain information |
---|
Probab=94.04 E-value=0.091 Score=30.00 Aligned_cols=31 Identities=29% Similarity=0.347 Sum_probs=27.5 Q ss_pred EEEEECCC--CHHHHHHHHHHHHHHCCCCEEEE Q ss_conf 39994589--84799999999999978935141 Q gi|254780821|r 26 VIHIGGTN--GKGSVASFSQRLLETSGLSVHVH 56 (429) Q Consensus 26 vI~VtGTn--GKttt~~~i~~il~~~g~k~g~~ 56 (429) T Consensus 1 ~i~~~~~kGvGKTT~a~~La~~la~~g~~Vl~v 33 (99) T cd01983 1 VIVVTGKGGVGKTTLAANLAAALAKRGKRVLLI 33 (99) T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEE T ss_conf 989858997768999999999999889969998 |
Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion. |
>COG2403 Predicted GTPase [General function prediction only] | Back alignment and domain information |
---|
Probab=93.71 E-value=0.13 Score=29.01 Aligned_cols=37 Identities=38% Similarity=0.582 Sum_probs=31.8 Q ss_pred CCEEEEECC---CCHHHHHHHHHHHHHHCCCCEEEEECCC Q ss_conf 983999458---9847999999999999789351413784 Q gi|254780821|r 24 PPVIHIGGT---NGKGSVASFSQRLLETSGLSVHVHTSPH 60 (429) Q Consensus 24 ~~vI~VtGT---nGKttt~~~i~~il~~~g~k~g~~tSPh 60 (429) T Consensus 126 kPviaV~atrtg~GKsaVS~~v~r~l~ergyrv~vVrhPm 165 (449) T COG2403 126 KPVIAVTATRTGVGKSAVSRYVARLLRERGYRVCVVRHPM 165 (449) T ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCE T ss_conf 8559999723665567888999999986698237995570 |
|
>TIGR00064 ftsY signal recognition particle-docking protein FtsY; InterPro: IPR004390 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems | Back alignment and domain information |
---|
Probab=92.89 E-value=0.098 Score=29.82 Aligned_cols=36 Identities=33% Similarity=0.461 Sum_probs=22.6 Q ss_pred HHHHCCCEEEEECCC--CHHHHHHHHHHHHHHCCCCEE Q ss_conf 588359839994589--847999999999999789351 Q gi|254780821|r 19 PQDRLPPVIHIGGTN--GKGSVASFSQRLLETSGLSVH 54 (429) Q Consensus 19 P~~~~~~vI~VtGTn--GKttt~~~i~~il~~~g~k~g 54 (429) T Consensus 77 ~~~~kp~Vil~VGVNG~GKTTTIaKLA~~l~~~Gk~V~ 114 (284) T TIGR00064 77 PEEKKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVL 114 (284) T ss_pred CCCCCCEEEEEEEEECCCHHHHHHHHHHHHHHCCCEEE T ss_conf 14789779999844088601028899999987499089 |
ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family includes the cell division ABC transporter and the periplasmic substrate-binding protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In Escherichia coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.; GO: 0005525 GTP binding. |
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway | Back alignment and domain information |
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Probab=92.48 E-value=0.71 Score=24.49 Aligned_cols=30 Identities=33% Similarity=0.419 Sum_probs=22.8 Q ss_pred EEEEECC--CCHHHHHHHHHHHHHHC--CCCEEE Q ss_conf 3999458--98479999999999997--893514 Q gi|254780821|r 26 VIHIGGT--NGKGSVASFSQRLLETS--GLSVHV 55 (429) Q Consensus 26 vI~VtGT--nGKttt~~~i~~il~~~--g~k~g~ 55 (429) T Consensus 1 IIGIaG~sgSGKST~a~~l~~~l~~~~~~~~v~i 34 (220) T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVEL 34 (220) T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEE T ss_conf 9897889987799999999998600269994899 |
The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis. |
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
---|
Probab=92.45 E-value=0.37 Score=26.25 Aligned_cols=50 Identities=26% Similarity=0.299 Sum_probs=37.1 Q ss_pred HHHHHHHHHCCCHHHHCCCEEE----EECCCCHHHHHHHHHHHHHHCCCCEEEEE Q ss_conf 9999999872995883598399----94589847999999999999789351413 Q gi|254780821|r 7 LKMGYLLEDLGRPQDRLPPVIH----IGGTNGKGSVASFSQRLLETSGLSVHVHT 57 (429) Q Consensus 7 ~r~~~ll~~lg~P~~~~~~vI~----VtGTnGKttt~~~i~~il~~~g~k~g~~t 57 (429) T Consensus 31 ~~~r~~~~~~g-~~~~pvPVI~VGNltvGGtGKTP~vi~la~~l~~rG~~~gvvS 84 (336) T COG1663 31 AGLRRKLAKKG-SYRAPVPVICVGNLTVGGTGKTPVVIWLAEALQARGVRVGVVS 84 (336) T ss_pred HHHHHHHHCCC-CCCCCCCEEEECCEEECCCCCCHHHHHHHHHHHHCCCEEEEEE T ss_conf 99999873246-6567887899855777789968899999999986697367980 |
|
>PRK09112 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
---|
Probab=92.42 E-value=0.78 Score=24.24 Aligned_cols=39 Identities=18% Similarity=0.287 Sum_probs=22.3 Q ss_pred HHHHHHHCCCHHHHCCCEEEEECCC--CHHHHHHHHHHHHHHC Q ss_conf 9999987299588359839994589--8479999999999997 Q gi|254780821|r 9 MGYLLEDLGRPQDRLPPVIHIGGTN--GKGSVASFSQRLLETS 49 (429) Q Consensus 9 ~~~ll~~lg~P~~~~~~vI~VtGTn--GKttt~~~i~~il~~~ 49 (429) T Consensus 32 ~~~L~~a~~~--gRl~HA~Lf~GP~GiGKaTlA~~~A~~Ll~~ 72 (352) T PRK09112 32 RAFLAQAYRE--GRLHHALLFEGPEGIGKATLAFHLANHILSH 72 (352) T ss_pred HHHHHHHHHC--CCCCCEEEEECCCCCCHHHHHHHHHHHHHCC T ss_conf 9999999984--9965246535899808999999999998669 |
|
>PRK07667 uridine kinase; Provisional | Back alignment and domain information |
---|
Probab=91.90 E-value=0.42 Score=25.92 Aligned_cols=36 Identities=19% Similarity=0.499 Sum_probs=29.8 Q ss_pred CHHHHCCCEEEEECC--CCHHHHHHHHHHHHHHCCCCEEE Q ss_conf 958835983999458--98479999999999997893514 Q gi|254780821|r 18 RPQDRLPPVIHIGGT--NGKGSVASFSQRLLETSGLSVHV 55 (429) Q Consensus 18 ~P~~~~~~vI~VtGT--nGKttt~~~i~~il~~~g~k~g~ 55 (429) T Consensus 10 ~~~~r~--iIgIaG~sgSGKTTla~~L~~~l~~~~~~v~v 47 (190) T PRK07667 10 HKENRF--ILGIDGLSRSGKTTFVANLKENMKQEGIPFHI 47 (190) T ss_pred CCCCEE--EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEE T ss_conf 759869--99977989788999999999998665983799 |
|
>COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism] | Back alignment and domain information |
---|
Probab=91.86 E-value=0.31 Score=26.72 Aligned_cols=33 Identities=27% Similarity=0.325 Sum_probs=29.5 Q ss_pred CEEEEECCC---CHHHHHHHHHHHHHHCCCCEEEEE Q ss_conf 839994589---847999999999999789351413 Q gi|254780821|r 25 PVIHIGGTN---GKGSVASFSQRLLETSGLSVHVHT 57 (429) Q Consensus 25 ~vI~VtGTn---GKttt~~~i~~il~~~g~k~g~~t 57 (429) T Consensus 3 ~~~fVtGTDT~VGKTv~S~aL~~~l~~~g~~~~~~K 38 (223) T COG0132 3 KRFFVTGTDTGVGKTVVSAALAQALKQQGYSVAGYK 38 (223) T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEC T ss_conf 369998279996499999999999996897059877 |
|
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism] | Back alignment and domain information |
---|
Probab=91.75 E-value=0.32 Score=26.63 Aligned_cols=34 Identities=24% Similarity=0.271 Sum_probs=29.3 Q ss_pred CCEEEEECCC--CHHHHHHHHHHHHHHCCCCEEEEE Q ss_conf 9839994589--847999999999999789351413 Q gi|254780821|r 24 PPVIHIGGTN--GKGSVASFSQRLLETSGLSVHVHT 57 (429) Q Consensus 24 ~~vI~VtGTn--GKttt~~~i~~il~~~g~k~g~~t 57 (429) T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~G~rVa~iK 37 (161) T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKARGYRVATVK 37 (161) T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEE T ss_conf 728999962799734289999999975793799998 |
|
>TIGR02397 dnaX_nterm DNA polymerase III, subunits gamma and tau; InterPro: IPR012763 This entry represents the well-conserved first N-terminal domain of DnaX, approx | Back alignment and domain information |
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Probab=91.60 E-value=0.43 Score=25.84 Aligned_cols=28 Identities=21% Similarity=0.218 Sum_probs=16.6 Q ss_pred CEEEEECCC--CHHHHHHHHHHHHHHCCCCE Q ss_conf 839994589--84799999999999978935 Q gi|254780821|r 25 PVIHIGGTN--GKGSVASFSQRLLETSGLSV 53 (429) Q Consensus 25 ~vI~VtGTn--GKttt~~~i~~il~~~g~k~ 53 (429) T Consensus 37 HAYLF~GpRGtGKTS~ARIfAKaLNC~-~~~ 66 (363) T TIGR02397 37 HAYLFSGPRGTGKTSIARIFAKALNCQ-GPD 66 (363) T ss_pred CEEEECCCCCCCHHHHHHHHHHHHCCC-CCC T ss_conf 234502859976355899999986588-787 |
365 aa. The full-length product of the dnaX gene in Escherichia coli encodes the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the extreme thermophile Thermus thermophilis.; GO: 0003887 DNA-directed DNA polymerase activity, 0005524 ATP binding, 0006260 DNA replication, 0009360 DNA polymerase III complex. |
>PRK01906 tetraacyldisaccharide 4'-kinase; Provisional | Back alignment and domain information |
---|
Probab=91.59 E-value=0.8 Score=24.19 Aligned_cols=50 Identities=18% Similarity=0.195 Sum_probs=36.2 Q ss_pred HHHHHHHHHCC-CHHHHCC-CEEEE----ECCCCHHHHHHHHHHHHHHCCCCEEEE Q ss_conf 99999998729-9588359-83999----458984799999999999978935141 Q gi|254780821|r 7 LKMGYLLEDLG-RPQDRLP-PVIHI----GGTNGKGSVASFSQRLLETSGLSVHVH 56 (429) Q Consensus 7 ~r~~~ll~~lg-~P~~~~~-~vI~V----tGTnGKttt~~~i~~il~~~g~k~g~~ 56 (429) T Consensus 37 ~~lR~~ly~~g~lk~~~~~vPVI~VGNitvGGTGKTP~vi~L~~~L~~~G~k~~Il 92 (339) T PRK01906 37 AALRRAAYARGWKKSVDVGVPVVVVGNVTVGGTGKTPTVIALVDALRAAGFTPGVV 92 (339) T ss_pred HHHHHHHHHCCCCCCCCCCCCEEEECCEEECCCCHHHHHHHHHHHHHHCCCCEEEE T ss_conf 99999987614445454899999986887688757799999999999769955998 |
|
>CHL00175 minD septum-site determining protein; Validated | Back alignment and domain information |
---|
Probab=91.50 E-value=0.38 Score=26.21 Aligned_cols=33 Identities=18% Similarity=0.237 Sum_probs=28.8 Q ss_pred CCCEEEEECCC---CHHHHHHHHHHHHHHCCCCEEE Q ss_conf 59839994589---8479999999999997893514 Q gi|254780821|r 23 LPPVIHIGGTN---GKGSVASFSQRLLETSGLSVHV 55 (429) Q Consensus 23 ~~~vI~VtGTn---GKttt~~~i~~il~~~g~k~g~ 55 (429) T Consensus 12 m~kiIaV~s~KGGVGKTT~a~NLa~aLA~~G~kVll 47 (279) T CHL00175 12 MTRIIVITSGKGGVGKTTTTANLGMSIARLGYRVAL 47 (279) T ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEE T ss_conf 886999974899844899999999999978998899 |
|
>PRK10818 cell division inhibitor MinD; Provisional | Back alignment and domain information |
---|
Probab=91.35 E-value=0.36 Score=26.35 Aligned_cols=31 Identities=19% Similarity=0.173 Sum_probs=27.5 Q ss_pred CEEEEECC---CCHHHHHHHHHHHHHHCCCCEEE Q ss_conf 83999458---98479999999999997893514 Q gi|254780821|r 25 PVIHIGGT---NGKGSVASFSQRLLETSGLSVHV 55 (429) Q Consensus 25 ~vI~VtGT---nGKttt~~~i~~il~~~g~k~g~ 55 (429) T Consensus 3 rvIaV~s~KGGVGKTT~avNLA~aLA~~G~kVll 36 (270) T PRK10818 3 RIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVV 36 (270) T ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEE T ss_conf 4999978999841899999999999977996899 |
|
>COG4240 Predicted kinase [General function prediction only] | Back alignment and domain information |
---|
Probab=91.34 E-value=0.56 Score=25.14 Aligned_cols=45 Identities=27% Similarity=0.477 Sum_probs=34.3 Q ss_pred HHHHHHHHHCCCHHHHCCCEEEEECC--CCHHHHHHHHHHHHHHCC-CCEEEE Q ss_conf 99999998729958835983999458--984799999999999978-935141 Q gi|254780821|r 7 LKMGYLLEDLGRPQDRLPPVIHIGGT--NGKGSVASFSQRLLETSG-LSVHVH 56 (429) Q Consensus 7 ~r~~~ll~~lg~P~~~~~~vI~VtGT--nGKttt~~~i~~il~~~g-~k~g~~ 56 (429) T Consensus 38 ~Kiap~~qe~grP-----li~gisGpQGSGKStls~~i~~~L~~kg~ert~~l 85 (300) T COG4240 38 AKIAPWAQERGRP-----LIVGISGPQGSGKSTLSALIVRLLAAKGLERTATL 85 (300) T ss_pred HHHHHHHHHCCCC-----EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEE T ss_conf 8644544212796-----39985268887653599999999997365306886 |
|
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein B; InterPro: IPR004435 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cisdithiolene moiety to molybdopterin (MPT) | Back alignment and domain information |
---|
Probab=91.33 E-value=0.38 Score=26.20 Aligned_cols=42 Identities=21% Similarity=0.316 Sum_probs=32.9 Q ss_pred EEEEECCC--CHHHHHHHHHHHHHHCCCCEEEEECCCCCEE---EEEEEECC Q ss_conf 39994589--8479999999999997893514137841101---20089888 Q gi|254780821|r 26 VIHIGGTN--GKGSVASFSQRLLETSGLSVHVHTSPHLIRW---NERFRLGV 72 (429) Q Consensus 26 vI~VtGTn--GKttt~~~i~~il~~~g~k~g~~tSPhl~~~---~Eri~i~~ 72 (429) T Consensus 1 v~~i~G~k~SGKTtL~~~l~~~L~~~Gy~V~~-----IKH~ghG~H~~~~d~ 47 (165) T TIGR00176 1 VLQIVGYKNSGKTTLIERLVKALKARGYRVAT-----IKHDGHGHHDFDIDK 47 (165) T ss_pred CEEEEEECCCCHHHHHHHHHHHHHCCCCCEEE-----EEECCCCCCCCEECC T ss_conf 93789625886789999999999707995089-----860898887565279 |
MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism , . In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which coverts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner . MoCF is the active co-factor in eukaryotic and some prokaryotic molybdoenzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdoenzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF . Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 ( |
>pfam00142 Fer4_NifH 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family | Back alignment and domain information |
---|
Probab=91.25 E-value=0.43 Score=25.82 Aligned_cols=32 Identities=25% Similarity=0.239 Sum_probs=27.2 Q ss_pred CEEEEEC--CCCHHHHHHHHHHHHHHCCCCEEEE Q ss_conf 8399945--8984799999999999978935141 Q gi|254780821|r 25 PVIHIGG--TNGKGSVASFSQRLLETSGLSVHVH 56 (429) Q Consensus 25 ~vI~VtG--TnGKttt~~~i~~il~~~g~k~g~~ 56 (429) T Consensus 1 r~iai~GKGGVGKTTtsvNLA~aLA~~GkrVlli 34 (269) T pfam00142 1 RKIAIYGKGGIGKSTTSQNTSAALAEMGKKVLIV 34 (269) T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEE T ss_conf 9589989997688999999999999879909998 |
|
>PRK00313 lpxK tetraacyldisaccharide 4'-kinase; Provisional | Back alignment and domain information |
---|
Probab=91.18 E-value=0.93 Score=23.77 Aligned_cols=49 Identities=27% Similarity=0.228 Sum_probs=33.8 Q ss_pred HHHHHHHHCCC-HHHHCC-CEEEE----ECCCCHHHHHHHHHHHHHHCCCCEEEE Q ss_conf 99999987299-588359-83999----458984799999999999978935141 Q gi|254780821|r 8 KMGYLLEDLGR-PQDRLP-PVIHI----GGTNGKGSVASFSQRLLETSGLSVHVH 56 (429) Q Consensus 8 r~~~ll~~lg~-P~~~~~-~vI~V----tGTnGKttt~~~i~~il~~~g~k~g~~ 56 (429) T Consensus 33 ~~R~~ly~~g~~~s~~~~vPVI~VGNitvGGTGKTP~v~~La~~L~~~G~~~~Ii 87 (332) T PRK00313 33 TGRRARFLRGEKASYRAPVPVIVVGNITVGGTGKTPLILWLIEHCRRRGLRVGVV 87 (332) T ss_pred HHHHHHHHCCCCCCCCCCCCEEEECCEEECCCCHHHHHHHHHHHHHHCCCCEEEE T ss_conf 9999998605455455899899987873588777799999999999779965898 |
|
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning] | Back alignment and domain information |
---|
Probab=91.17 E-value=0.4 Score=26.07 Aligned_cols=33 Identities=27% Similarity=0.282 Sum_probs=28.8 Q ss_pred CCCEEEEECCC---CHHHHHHHHHHHHHHCCCCEEE Q ss_conf 59839994589---8479999999999997893514 Q gi|254780821|r 23 LPPVIHIGGTN---GKGSVASFSQRLLETSGLSVHV 55 (429) Q Consensus 23 ~~~vI~VtGTn---GKttt~~~i~~il~~~g~k~g~ 55 (429) T Consensus 56 ~~~~I~V~S~kgGvGKStva~nLA~alA~~G~rVll 91 (265) T COG0489 56 VKNVIAVTSGKGGVGKSTVAVNLAAALAQLGKRVLL 91 (265) T ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEE T ss_conf 661899975899875689999999999963993899 |
|
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional | Back alignment and domain information |
---|
Probab=90.87 E-value=0.62 Score=24.85 Aligned_cols=33 Identities=18% Similarity=0.201 Sum_probs=28.0 Q ss_pred CCEEEEECCC--CHHHHHHHHHHHHHHCCCCEEEE Q ss_conf 9839994589--84799999999999978935141 Q gi|254780821|r 24 PPVIHIGGTN--GKGSVASFSQRLLETSGLSVHVH 56 (429) Q Consensus 24 ~~vI~VtGTn--GKttt~~~i~~il~~~g~k~g~~ 56 (429) T Consensus 2 ~Pii~ivG~s~SGKTTLi~kli~~l~~~G~rV~~I 36 (170) T PRK10751 2 IPLLAIAAWSGTGKTTLLKKLIPALCARGIRPGLI 36 (170) T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEE T ss_conf 87799994699999999999999999879849999 |
|
>pfam02606 LpxK Tetraacyldisaccharide-1-P 4'-kinase | Back alignment and domain information |
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Probab=90.77 E-value=1 Score=23.55 Aligned_cols=50 Identities=32% Similarity=0.341 Sum_probs=35.4 Q ss_pred HHHHHHHHHCCC-HHHHCC-CEEE----EECCCCHHHHHHHHHHHHHHCCCCEEEE Q ss_conf 999999987299-588359-8399----9458984799999999999978935141 Q gi|254780821|r 7 LKMGYLLEDLGR-PQDRLP-PVIH----IGGTNGKGSVASFSQRLLETSGLSVHVH 56 (429) Q Consensus 7 ~r~~~ll~~lg~-P~~~~~-~vI~----VtGTnGKttt~~~i~~il~~~g~k~g~~ 56 (429) T Consensus 16 ~~lR~~ly~~~~~k~~~~~vpVI~VGNit~GGtGKTP~v~~l~~~l~~~g~~~~il 71 (318) T pfam02606 16 AALRRALYRRGILKSYRLPVPVIVVGNITVGGTGKTPLVIALAELLRARGLRPGVL 71 (318) T ss_pred HHHHHHHHHCCCCCCCCCCCCEEEECCEEECCCCHHHHHHHHHHHHHHCCCCEEEE T ss_conf 99999998605556344899999998984588785899999999999769944783 |
This family consists of tetraacyldisaccharide-1-P 4'-kinase also known as Lipid-A 4'-kinase or Lipid A biosynthesis protein LpxK, EC:2.7.1.130. This enzyme catalyses the reaction: ATP + 2,3-bis(3-hydroxytetradecanoyl)-D -glucosaminyl-(beta-D-1,6)-2,3-bis(3-hydroxytetradecanoyl)-D-glu cosam inyl beta-phosphate <= ADP + 2,3,2',3'-tetrakis(3-hydroxytetradecanoyl)-D- glucosaminyl-1,6-beta-D-glucosamine 1,4'-bisphosphate. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS). The family contains a P-loop motif at the N terminus. |
>pfam00448 SRP54 SRP54-type protein, GTPase domain | Back alignment and domain information |
---|
Probab=90.76 E-value=0.55 Score=25.20 Aligned_cols=33 Identities=24% Similarity=0.268 Sum_probs=27.6 Q ss_pred CEEEEECCC--CHHHHHHHHHHHHHHCCCCEEEEE Q ss_conf 839994589--847999999999999789351413 Q gi|254780821|r 25 PVIHIGGTN--GKGSVASFSQRLLETSGLSVHVHT 57 (429) Q Consensus 25 ~vI~VtGTn--GKttt~~~i~~il~~~g~k~g~~t 57 (429) T Consensus 2 ~vi~lvGptGvGKTTTiaKLAa~~~~~~~~V~lit 36 (196) T pfam00448 2 NVILLVGLQGSGKTTTIAKLAAYLKKQGKKVLLVA 36 (196) T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEE T ss_conf 69999899999889999999999997799289997 |
This family includes relatives of the G-domain of the SRP54 family of proteins. |
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism] | Back alignment and domain information |
---|
Probab=90.68 E-value=1.2 Score=23.15 Aligned_cols=44 Identities=34% Similarity=0.388 Sum_probs=30.3 Q ss_pred HHHHHHHCCCHHHHCCCEEEEECCC--CHHHHHHHHHHHHHHCCCC Q ss_conf 9999987299588359839994589--8479999999999997893 Q gi|254780821|r 9 MGYLLEDLGRPQDRLPPVIHIGGTN--GKGSVASFSQRLLETSGLS 52 (429) Q Consensus 9 ~~~ll~~lg~P~~~~~~vI~VtGTn--GKttt~~~i~~il~~~g~k 52 (429) T Consensus 67 ~~~~~~~l~~~~~~~pfIIgiaGsvavGKST~ar~L~~ll~~~~~~ 112 (283) T COG1072 67 FAELLRFLGTNNQQRPFIIGIAGSVAVGKSTTARILQALLSRWPES 112 (283) T ss_pred HHHHHHHHCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCC T ss_conf 9999998346688888799960576655778999999999638898 |
|
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily | Back alignment and domain information |
---|
Probab=90.51 E-value=0.49 Score=25.51 Aligned_cols=31 Identities=32% Similarity=0.300 Sum_probs=26.1 Q ss_pred EEEEE---CCCCHHHHHHHHHHHHHHCCCCEEEE Q ss_conf 39994---58984799999999999978935141 Q gi|254780821|r 26 VIHIG---GTNGKGSVASFSQRLLETSGLSVHVH 56 (429) Q Consensus 26 vI~Vt---GTnGKttt~~~i~~il~~~g~k~g~~ 56 (429) T Consensus 1 vi~v~s~kggvgkst~~~~la~~l~~~g~~v~~~ 34 (169) T cd02037 1 VIAVMSGKGGVGKSTVAVNLALALAKLGYKVGLL 34 (169) T ss_pred CEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEE T ss_conf 9899749998819999999999999879978999 |
Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter. |
>PRK12374 putative dithiobiotin synthetase; Provisional | Back alignment and domain information |
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Probab=90.32 E-value=0.4 Score=26.02 Aligned_cols=31 Identities=32% Similarity=0.335 Sum_probs=26.5 Q ss_pred EEEECCC---CHHHHHHHHHHHHHHCCCCEEEEE Q ss_conf 9994589---847999999999999789351413 Q gi|254780821|r 27 IHIGGTN---GKGSVASFSQRLLETSGLSVHVHT 57 (429) Q Consensus 27 I~VtGTn---GKttt~~~i~~il~~~g~k~g~~t 57 (429) T Consensus 5 ~FITGTDTdVGKT~vsaaL~~~l~~~G~~v~~~K 38 (231) T PRK12374 5 FFITGTDTSVGKTVVSRALLQALASQGKSVAGYK 38 (231) T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEE T ss_conf 7998789995399999999999997899488885 |
|
>pfam03205 MobB Molybdopterin guanine dinucleotide synthesis protein B | Back alignment and domain information |
---|
Probab=90.24 E-value=0.62 Score=24.88 Aligned_cols=32 Identities=25% Similarity=0.404 Sum_probs=28.1 Q ss_pred CEEEEECCC--CHHHHHHHHHHHHHHCCCCEEEE Q ss_conf 839994589--84799999999999978935141 Q gi|254780821|r 25 PVIHIGGTN--GKGSVASFSQRLLETSGLSVHVH 56 (429) Q Consensus 25 ~vI~VtGTn--GKttt~~~i~~il~~~g~k~g~~ 56 (429) T Consensus 1 p~v~i~G~~~sGKttl~~~L~~~~~~~g~~~~~~ 34 (122) T pfam03205 1 PIVLVVGPKDSGKTTLIRKLLNYLKRRGYRVAVV 34 (122) T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE T ss_conf 9799994899989999999999999879944899 |
This protein contains a P-loop. |
>PRK09270 frcK putative fructose transport system kinase; Reviewed | Back alignment and domain information |
---|
Probab=90.06 E-value=0.59 Score=24.99 Aligned_cols=44 Identities=27% Similarity=0.313 Sum_probs=33.8 Q ss_pred HHHHHHHHHHCCCHHHHCCCEEEEECC--CCHHHHHHHHHHHHHHCCC Q ss_conf 899999998729958835983999458--9847999999999999789 Q gi|254780821|r 6 LLKMGYLLEDLGRPQDRLPPVIHIGGT--NGKGSVASFSQRLLETSGL 51 (429) Q Consensus 6 l~r~~~ll~~lg~P~~~~~~vI~VtGT--nGKttt~~~i~~il~~~g~ 51 (429) T Consensus 18 ~~~~~~~~~~~~~~~rR~--lIgIaG~pGSGKSTlA~~l~~~L~~~~~ 63 (230) T PRK09270 18 IEEVHKPLMLAAEPQRRT--VVGIAGPPGAGKSTLAETLWEALSQQGP 63 (230) T ss_pred HHHHHHHHHHHCCCCCEE--EEEEECCCCCCHHHHHHHHHHHHHHCCC T ss_conf 899999998715999718--9999899988999999999999862379 |
|
>KOG0780 consensus | Back alignment and domain information |
---|
Probab=90.01 E-value=0.46 Score=25.64 Aligned_cols=34 Identities=24% Similarity=0.321 Sum_probs=28.5 Q ss_pred CCEEEEECCC--CHHHHHHHHHHHHHHCCCCEEEEE Q ss_conf 9839994589--847999999999999789351413 Q gi|254780821|r 24 PPVIHIGGTN--GKGSVASFSQRLLETSGLSVHVHT 57 (429) Q Consensus 24 ~~vI~VtGTn--GKttt~~~i~~il~~~g~k~g~~t 57 (429) T Consensus 101 psVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~Lvc 136 (483) T KOG0780 101 PSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVC 136 (483) T ss_pred CCEEEEEECCCCCCCEEHHHHHHHHHHCCCCEEEEE T ss_conf 708999830578863008999999984687245776 |
|
>PRK10416 cell division protein FtsY; Provisional | Back alignment and domain information |
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Probab=94.92 E-value=0.067 Score=30.82 Aligned_cols=10 Identities=10% Similarity=0.155 Sum_probs=3.6 Q ss_pred HHCCCCEEEE Q ss_conf 8549978996 Q gi|254780821|r 377 KKLGFQAMAC 386 (429) Q Consensus 377 ~~~~~~~~~~ 386 (429) T Consensus 374 ~~~~~Dvvii 383 (499) T PRK10416 374 KARNVDVLIA 383 (499) T ss_pred HHCCCCEEEE T ss_conf 9729998998 |
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>TIGR02082 metH methionine synthase; InterPro: IPR011822 Vitamin B12 dependent methionine synthase 2 | Back alignment and domain information |
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Probab=93.74 E-value=0.029 Score=33.11 Aligned_cols=28 Identities=21% Similarity=0.169 Sum_probs=13.9 Q ss_pred HHHHHHHHHHHHHCCHHHHCCCCCCCCC Q ss_conf 1469999875320000110011222233 Q gi|254780821|r 245 AATAICAVQMAGFTLEKECINAALQSVQ 272 (429) Q Consensus 245 a~~Aiaa~~~lg~~i~~~~I~~gL~~~~ 272 (429) T Consensus 536 a~~fI~A~r~IK~~LP~a~isgGvSNvS 563 (1265) T TIGR02082 536 AIDFIEAIRWIKEELPDAKISGGVSNVS 563 (1265) T ss_pred HHHHHHHHHHHHHHCCCCEEECCEEEEE T ss_conf 7899999999996589728853402221 |
1.1.13 from EC (5-methyltetrahydrofolate--homocysteine S-methyltransferase) catalyses the conversion of 5-methyltetrahydrofolate and L-homocysteine to tetrahydrofolate and L-methionine as the final step in de novo methionine biosynthesis. The enzyme requires methylcobalamin as a cofactor. In humans, defects in this enzyme are the cause of autosomal recessive inherited methylcobalamin deficiency (CBLG), which causes mental retardation, macrocytic anemia and homocystinuria. Mild deficiencies in activity may result in mild hyperhomocysteinemia, and mutations in the enzyme may be involved in tumorigenesis. Vitamin B12 dependent methionine synthase is found in prokaryotes and eukaryotes, but in prokaryotes the cofactor is cobalamin. This enzyme is a large protein composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and tetrahydrofolate , the third module binds the B12 cofactor , and the C-terminal module (activation domain) binds S-adenosylmethionine. The activation domain is essential for the reductive activation of the enzyme. During the catalytic cycle, the highly reactive cob(I)alamin intermediate can be oxidised to produce an inactive cob(II)alamin enzyme; the enzyme is then reactivated via reductive methylation by the activation domain . The activation domain adopts an unusual alpha/beta fold.Recent studies suggest that this enzyme exists as an ensemble of conformations with equilibria dependent on the oxidation and methylation state of the cobalamin and on the concentrations of substrates or products .; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0050897 cobalt ion binding, 0009086 methionine biosynthetic process. |
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional | Back alignment and domain information |
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Probab=93.41 E-value=0.19 Score=28.09 Aligned_cols=83 Identities=14% Similarity=0.177 Sum_probs=46.8 Q ss_pred EEEEECC---CCHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEECCCCCCCEECCHHHHHHHHHHHHHCCCCCCCC Q ss_conf 3999458---9847999999999999789351413784110120089888477871558899999999986304776779 Q gi|254780821|r 26 VIHIGGT---NGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNERFRLGVKGGRGRLVEDVELLDVFRRVRRVKSAQNLT 102 (429) Q Consensus 26 vI~VtGT---nGKttt~~~i~~il~~~g~k~g~~tSPhl~~~~Eri~i~~~~~~g~~i~~~~~~~~~~~i~~~~~~~~~t 102 (429) T Consensus 3 gilIAa~~SgsGKTtvt~gL~~aL~~rG~~Vq~F------------K~G-----PDYIDP~~-----h~~a~G~~~~NLD 60 (432) T PRK13896 3 GVVLAGTSSGVGKTVATLAVLQALADAGYDVQPA------------KAG-----PDFIDPSH-----HEAVVDTPSRSLD 60 (432) T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCC------------CCC-----CCCCCHHH-----HHHHHCCCCCCCC T ss_conf 2899778999989999999999999784963766------------668-----47519899-----9999689844689 Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHH Q ss_conf 5789999999874114462477764447 Q gi|254780821|r 103 IFELSIATALVLFSKYPADCAIIEVGLG 130 (429) Q Consensus 103 ~FE~lt~~a~~~f~~~~~d~~vlE~GlG 130 (429) T Consensus 61 ~~m~~~~~v~~~~~~~~aDiaviEGvMG 88 (432) T PRK13896 61 PWLSGEDGMRRTYWRGTGDVCVVEGMMG 88 (432) T ss_pred HHHCCHHHHHHHHHHCCCCEEEEEECCC T ss_conf 1018989999999727998699961232 |
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>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
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Probab=92.67 E-value=0.3 Score=26.79 Aligned_cols=26 Identities=8% Similarity=-0.003 Sum_probs=11.7 Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCC Q ss_conf 15444717898899998621056652 Q gi|254780821|r 180 VIGHQVYDEVREILVSKAEKMGCPYN 205 (429) Q Consensus 180 v~~~~~~~~~~~~i~~~a~~~~~~~~ 205 (429) T Consensus 109 ia~DtyR~aA~eQLk~~a~~l~v~~~ 134 (270) T PRK06731 109 ITTDHSRIGTVQQLQDYVKTIGFEVI 134 (270) T ss_pred EEECCCCHHHHHHHHHHHHHHCCCEE T ss_conf 98388888899999999998199535 |
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>TIGR02533 type_II_gspE general secretory pathway protein E; InterPro: IPR013369 GspE, the E protein of the type II secretion system, is also referred to as the main terminal branch of the general secretion pathway | Back alignment and domain information |
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Probab=92.55 E-value=0.48 Score=25.55 Aligned_cols=32 Identities=25% Similarity=0.233 Sum_probs=15.9 Q ss_pred CEEEEEC-CCCCCCHH--HHHHHHHHHCCEEEEEE Q ss_conf 1243113-46798989--99998886388899984 Q gi|254780821|r 323 PFYLVIG-MVEGKKYG--RYLEAFVELSPIVLSVS 354 (429) Q Consensus 323 ~i~~I~G-~~~dKd~~--~~l~~l~~~~d~i~~~~ 354 (429) T Consensus 246 GIiLVTGPTGSGKtTTLYaaL~~LN~~~~NIlTvE 280 (495) T TIGR02533 246 GIILVTGPTGSGKTTTLYAALSRLNTPERNILTVE 280 (495) T ss_pred CEEEECCCCCCCHHHHHHHHHHHHCCCCCCEEEEE T ss_conf 61884177898525889999986358997156865 |
; GO: 0005524 ATP binding, 0008565 protein transporter activity, 0015628 protein secretion by the type II secretion system, 0015627 type II protein secretion system complex. |
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] | Back alignment and domain information |
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Probab=91.70 E-value=0.2 Score=27.87 Aligned_cols=23 Identities=22% Similarity=0.252 Sum_probs=8.4 Q ss_pred EEEEECCCCCCCHHHHHHHHHHH Q ss_conf 24311346798989999988863 Q gi|254780821|r 324 FYLVIGMVEGKKYGRYLEAFVEL 346 (429) Q Consensus 324 i~~I~G~~~dKd~~~~l~~l~~~ 346 (429) T Consensus 261 ~llvlDAttGqnal~QAk~F~ea 283 (340) T COG0552 261 ILLVLDATTGQNALSQAKIFNEA 283 (340) T ss_pred EEEEEECCCCHHHHHHHHHHHHH T ss_conf 89997756475689999999875 |
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>PRK11519 tyrosine kinase; Provisional | Back alignment and domain information |
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Probab=91.44 E-value=0.49 Score=25.47 Aligned_cols=50 Identities=12% Similarity=0.166 Sum_probs=21.9 Q ss_pred HHHHHHHHHHHHHCCCCCCCEEEEECCCC--CCCH--HHHHHHHHHHCCEEEEE Q ss_conf 57998886543311477771243113467--9898--99999888638889998 Q gi|254780821|r 304 NAGLVVSKEISKLKGSSNKPFYLVIGMVE--GKKY--GRYLEAFVELSPIVLSV 353 (429) Q Consensus 304 ~s~~~l~~~l~~l~~~~~~~i~~I~G~~~--dKd~--~~~l~~l~~~~d~i~~~ 353 (429) T Consensus 508 Ea~R~lrt~l~~~~~~~~~~vi~vTS~~pgEGKSt~a~nLA~~~A~~G~rvLLI 561 (720) T PRK11519 508 EAIRSLRTSLHFAMMQAQNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLI 561 (720) T ss_pred HHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEE T ss_conf 999999999987446888767999708999978999999999998379919999 |
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>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional | Back alignment and domain information |
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Probab=90.97 E-value=0.71 Score=24.50 Aligned_cols=27 Identities=7% Similarity=0.097 Sum_probs=12.3 Q ss_pred HHHHHHHHHHHHHCCCCCCCEEEEECC Q ss_conf 579988865433114777712431134 Q gi|254780821|r 304 NAGLVVSKEISKLKGSSNKPFYLVIGM 330 (429) Q Consensus 304 ~s~~~l~~~l~~l~~~~~~~i~~I~G~ 330 (429) T Consensus 513 Ea~R~lrt~l~~~~~~~~~kvi~vTS~ 539 (726) T PRK09841 513 EAVRALRTSLHFAMMETENNILMITGA 539 (726) T ss_pred HHHHHHHHHHHHHCCCCCCCEEEEECC T ss_conf 999999998887526888868999779 |
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>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG | Back alignment and domain information |
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Probab=91.12 E-value=0.34 Score=26.47 Aligned_cols=13 Identities=15% Similarity=0.187 Sum_probs=7.5 Q ss_pred CCHHHHHHHHHHH Q ss_conf 5889999999998 Q gi|254780821|r 80 VEDVELLDVFRRV 92 (429) Q Consensus 80 i~~~~~~~~~~~i 92 (429) T Consensus 15 i~~~~~~~~l~~q 27 (274) T TIGR03029 15 LSEDEAERILRLQ 27 (274) T ss_pred CCHHHHHHHHHHH T ss_conf 8999999999999 |
The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF). |
Homologous Structures in PDB Database
Detected by PSI-BLAST, RPS-BLAST and HHsearch
Homologous Structures Detected by PSI-BLAST against Nonredundant Database
Identity | Alignment graph | Length | Definition | E-value |
Target | 429 | FolC bifunctional protein [Candidatus Liberibacter asia | ||
1o5z_A | 442 | Crystal Structure Of Folylpolyglutamate Synthase (T | 1e-48 | |
1w78_A | 422 | E.Coli Folc In Complex With Dhpp And Adp Length = 4 | 5e-46 | |
3n2a_A | 437 | Crystal Structure Of Bifunctional Folylpolyglutamat | 9e-46 | |
1fgs_A | 428 | Folylpolyglutamate Synthetase From Lactobacillus Ca | 4e-43 | |
2gca_A | 428 | Apo Form Of L. Casei Fpgs Length = 428 | 4e-43 | |
1jbv_A | 428 | Fpgs-Amppcp Complex Length = 428 | 4e-43 | |
2gc5_A | 428 | G51s Mutant Of L. Casei Fpgs Length = 428 | 3e-42 | |
2gcb_A | 428 | G51sS52T DOUBLE MUTANT OF L. CASEI FPGS Length = 42 | 5e-42 | |
2gc6_A | 428 | S73a Mutant Of L. Casei Fpgs Length = 428 | 7e-42 | |
2vor_A | 487 | Crystal Structures Of Mycobacterium Tuberculosis Fo | 3e-36 | |
2vos_A | 487 | Mycobacterium Tuberculosis Folylpolyglutamate Synth | 3e-30 | |
2wtz_A | 535 | Mure Ligase Of Mycobacterium Tuberculosis Length = | 1e-09 | |
1e8c_A | 498 | Structure Of Mure The Udp-N-Acetylmuramyl Tripeptid | 3e-08 |
>gi|39654293|pdb|1O5Z|A Chain A, Crystal Structure Of Folylpolyglutamate Synthase (Tm0166) From Thermotoga Maritima At 2.10 A Resolution Length = 442 | Back alignment and structure |
Score = 198 bits (504), Expect = 1e-48, Method: Composition-based stats. Identities = 116/439 (26%), Positives = 186/439 (42%), Gaps = 43/439 (9%) Query: 2 AADSLLKMGYLLEDLGRPQDRLPPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHL 61 L ++ LL LG P IHIGGTNGKGSVA+ +L + G V + SPHL Sbjct: 31 VKPGLERISMLLSKLGNPHLEY-KTIHIGGTNGKGSVANMVSNILVSQGYRVGSYYSPHL 89 Query: 62 IRWNERFRLGVKGGRGRLVEDVELLDVFRRVRRV------KSAQNLTIFELSIATALVLF 115 + ER RL + + +++ ++ + + + + + FE+ A A + F Sbjct: 90 STFRERIRLN-----EEYISEEDVVKIYETMEPILNELDKEEIFSPSFFEVVTAMAFLYF 144 Query: 116 SKYPADCAIIEVGLGGSLDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGIIKP 175 ++ D A++EVGLGG LDATN++ S I ++ DHEK LG T+ IA +KSGIIK Sbjct: 145 AEKNVDIAVLEVGLGGRLDATNVV-FPLCSTIVTVDRDHEKTLGYTIEQIAWEKSGIIKE 203 Query: 176 GCPVVIGHQVYDEVREILVSKAEKMGCPYNVYGDDFYAFEKNKCLVYQDKISQTNLTV-- 233 P+V G + E +++ A K V DF K+ L T Sbjct: 204 RVPLVTGERKR-EALKVMEDVARKKSSRMYVIDKDFSVKVKSLKLHENRFDYCGENTFED 262 Query: 234 --LGLVGEHQYINAATAICAVQMAGFTLEKECINAALQSVQWFGRLQKITEGPLLNKLPD 291 L + G HQ NA A+ ++ G L ++ I L++ + GR + + Sbjct: 263 LVLTMNGPHQIENAGVALKTLEATGLPLSEKAIREGLKNAKNLGRFEI--------LEKN 314 Query: 292 HSEVWIDGGHNPNAGLVVSKEISKLKGSSNKPFYLVIGMVEGKKYGRYLEAFVELSPIVL 351 +DG HNP+ + + + + +P LVIG+++ K L + + V+ Sbjct: 315 GKMYILDGAHNPHGAESLVRSL--KLYFNGEPLSLVIGILDDKNREDILRKYTGIFERVI 372 Query: 352 SVSLICRGRERQSISITPKVLMQEAKKLGFQAMACSSMIEALSRVRKINEELPPPLILIA 411 + L+ AKK +EA+ + ++ Sbjct: 373 VTRV------PSPRMKDMNSLVDMAKKFFKNVEVIEDPLEAIESTERAT--------VVT 418 Query: 412 GSLYLAGEALRENGV-RIN 429 GSL+L G +IN Sbjct: 419 GSLFLVGYVREFLTTGKIN 437 |
>gi|61680167|pdb|1W78|A Chain A, E.Coli Folc In Complex With Dhpp And Adp Length = 422 | Back alignment and structure |
Score = 190 bits (481), Expect = 5e-46, Method: Composition-based stats. Identities = 102/418 (24%), Positives = 171/418 (40%), Gaps = 38/418 (9%) Query: 6 LLKMGYLLEDLGRPQDRLPPVI-HIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRW 64 L ++ + LG + P + + GTNGKG+ + +L +G V V++SPHL+R+ Sbjct: 32 LERVSLVAARLGV--LKPAPFVFTVAGTNGKGTTCRTLESILMAAGYKVGVYSSPHLVRY 89 Query: 65 NERFRLGVKGGRGRLVEDVELLDVFRRVRRVKSAQNLTIFELSIATALVLFSKYPADCAI 124 ER R+ +G+ + + F + + +LT FE +AL LF + D I Sbjct: 90 TERVRV-----QGQELPESAHTASFAEIESARGDISLTYFEYGTLSALWLFKQAQLDVVI 144 Query: 125 IEVGLGGSLDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGIIKPGCPVVIGHQ 184 +EVGLGG LDATNI+ V+V+TSI+LDH LG +I ++ +GI + P ++G Sbjct: 145 LEVGLGGRLDATNIV-DADVAVVTSIALDHTDWLGPDRESIGREXAGIFRSEKPAIVGEP 203 Query: 185 VYDEVREILVSKAEKMGCPYNVYGDDFYAFEKNKCLVYQDKISQTNLTVLGLVGEHQYIN 244 A++ G G ++ + + D L L N Sbjct: 204 EMPSTIA---DVAQEKGALLQRRGVEWNYSVTDHDWAFSDAHGTLENLPLPL---VPQPN 257 Query: 245 AATAICAVQMAGFTLEKECINAALQSVQWFGRLQKITEGPLLNKLPDHSEVWIDGGHNPN 304 AATA+ A++ +G + + I + S GR Q ++E P V D HNP+ Sbjct: 258 AATALAALRASGLEVSENAIRDGIASAILPGRFQIVSESP---------RVIFDVAHNPH 308 Query: 305 AGLVVSKEISKLKGSSNKPFYLVIGMVEGKKYGRYLEAFVELSPIVLSVSLICRGRERQS 364 A ++ + N VIGM+ K L + L Sbjct: 309 AAEYLTGRMKA--LPKNGRVLAVIGMLHDKDIAGTLAWLKSVVDDWYCAPL------EGP 360 Query: 365 ISITPKVLMQEAKKLGFQAMACSSMIEALSRVRKINEELPPPLILIAGSLYLAGEALR 422 T + L++ + S+ +A + + +L+ GS + + Sbjct: 361 RGATAEQLLEHL----GNGKSFDSVAQAWDAA--MADAKAEDTVLVCGSFHTVAHVME 412 |
>gi|299856869|pdb|3N2A|A Chain A, Crystal Structure Of Bifunctional Folylpolyglutamate SynthaseDIHYDROFOLATE SYNTHASE FROM YERSINIA PESTIS CO92 Length = 437 | Back alignment and structure |
Score = 189 bits (479), Expect = 9e-46, Method: Composition-based stats. Identities = 102/431 (23%), Positives = 177/431 (41%), Gaps = 42/431 (9%) Query: 6 LLKMGYLLEDLG--RPQDRLPPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIR 63 L ++ + E L +P P + + GTNGKG+ + +L +GL V V++SPHL+R Sbjct: 35 LERVKQVAERLDLLKP---APKIFTVAGTNGKGTTCCTLEAILLAAGLRVGVYSSPHLLR 91 Query: 64 WNERFRLGVKGGRGRLVEDVELLDVFRRVRRVKSAQNLTIFELSIATALVLFSKYPADCA 123 + ER R+ +G+ + + E F ++ + +LT FE +AL LF + D Sbjct: 92 YTERVRI-----QGQELSEAEHSHSFAQIEAGRGDISLTYFEFGTLSALQLFKQAKLDVV 146 Query: 124 IIEVGLGGSLDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGIIKPGCPVVIGH 183 I+EVGLGG LDATNI++ V+ ITSI+LDH LG +I ++K+G+ + G P V+G Sbjct: 147 ILEVGLGGRLDATNIVDS-DVAAITSIALDHTDWLGYDRESIGREKAGVFRGGKPAVVGE 205 Query: 184 QVYDEVREILVSKA------EKMGCPYNVYGDDFYAFEKNKCLVYQDKISQTNLTVLGLV 237 + + ++ + ++ ++ + V Sbjct: 206 PDMPQSIADVAAELGAQLYRRDVAWKFSQQEPFDQQEPVDQQINGWHWQCGERQLTGLPV 265 Query: 238 GEHQYINAATAICAVQMAGFTLEKECINAALQSVQWFGRLQKITEGPLLNKLPDHSEVWI 297 NAATA+ + + L E I LQ+ GR Q ++E P + + Sbjct: 266 PNVPLANAATALAVLHYSELPLSDEAIRQGLQAASLPGRFQVVSEQP---------LLIL 316 Query: 298 DGGHNPNAGLV----VSKEISKLKGSSNKPFYLVIGMVEGKKYGRYLEAFVELSPIVLSV 353 D HNP+A +++ I+ + S V+GM+ K L E Sbjct: 317 DVAHNPHAARYLVNRLAQVINPVNASKQGKVRAVVGMLSDKDIAGTLACLSERVDEWYCA 376 Query: 354 SLICRGRERQSISITPKVLMQEAKKLGFQAMACSSMIEALSRVRKINEELPPPLILIAGS 413 L + L + A S + A + + + ++++ GS Sbjct: 377 PL------EGPRGASAGQLAEHL----VSARQFSDVETAWRQAMQ--DADTQDVVIVCGS 424 Query: 414 LYLAGEALREN 424 + + Sbjct: 425 FHTVAHVMAAL 435 |
>gi|157831071|pdb|1FGS|A Chain A, Folylpolyglutamate Synthetase From Lactobacillus Casei Length = 428 | Back alignment and structure |
Score = 180 bits (456), Expect = 4e-43, Method: Composition-based stats. Identities = 119/430 (27%), Positives = 196/430 (45%), Gaps = 40/430 (9%) Query: 8 KMGYLLEDLGRPQDRLPPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNER 67 ++ LL LG PQ + IH+ GTNGKGS A+ +LE SGL+V ++TSP ++R+NER Sbjct: 24 RILTLLHALGNPQQQ-GRYIHVTGTNGKGSAANAIAHVLEASGLTVGLYTSPFIMRFNER 82 Query: 68 FRLGVKGGRGRLVEDVELLD-------VFRRVRRVKSAQNLTIFELSIATALVLFSKYPA 120 + + D L++ R+++ ++ N+T FE A A F + Sbjct: 83 IMIDH-----EPIPDAALVNAVAFVRAALERLQQQQADFNVTEFEFITALAYWYFRQRQV 137 Query: 121 DCAIIEVGLGGSLDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGIIKPGCPVV 180 D A+IEVG+GG D+TN+I VSV+T ++LDH+K+LG+T++AIAK K+GIIK G PVV Sbjct: 138 DVAVIEVGIGGDTDSTNVI-TPVVSVLTEVALDHQKLLGHTITAIAKHKAGIIKRGIPVV 196 Query: 181 IGHQVYDEVREILVSK----AEKMGCPYNVYGDDFYAFEKNKCLVYQDKISQTNLTVLGL 236 G+ V D + ++ + + + Y+D+ + + + L Sbjct: 197 TGNLVPDAAAVVAAKVATTGSQWLRFDRDFSVPKAKLHGWGQRFTYEDQDGRISDLEVPL 256 Query: 237 VGEHQYINAATAICAVQMAGFTLEKECINAALQSVQWFGRLQKITEGPLLNKLPDHSEVW 296 VG++Q N A AI ++ E ++ L K+ D + Sbjct: 257 VGDYQQRNMAIAIQTAKVYAKQTEWPLTPQNIRQGLAASH-----WPARLEKISDTPLIV 311 Query: 297 IDGGHNPNAGLVVSKEISKLKGSSNKPFYLVIGMVEGKKYGRYLEAFVELSPIVLSVSLI 356 IDG HNP+ + + +L ++ G++ K Y + V V + Sbjct: 312 IDGAHNPDGINGLITALKQLFSQP---ITVIAGILADKDYAAMADRLTAAFSTVYLVPV- 367 Query: 357 CRGRERQSISITPKVLMQEAKKLGFQAMACSSMIEALSRVRKINEELPPPLILIAGSLYL 416 ++ P+ + + + S EAL+ ++P I+I GSLYL Sbjct: 368 ----PGTPRAL-PEAGYEALHEGRLK----DSWQEALA---ASLNDVPDQPIVITGSLYL 415 Query: 417 AGEALR-ENG 425 A + G Sbjct: 416 ASAVRQTLLG 425 |
gi|110590234|pdb|2GCA|A Chain A, Apo Form Of L. Casei Fpgs Length = 428 | Back alignment and structure |
Score = 180 bits (456), Expect = 4e-43, Method: Composition-based stats. Identities = 118/430 (27%), Positives = 195/430 (45%), Gaps = 40/430 (9%) Query: 8 KMGYLLEDLGRPQDRLPPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNER 67 ++ LL LG PQ + IH+ GTNGKGS A+ +LE SGL+V ++TSP ++R+NER Sbjct: 24 RILTLLHALGNPQQQ-GRYIHVTGTNGKGSAANAIAHVLEASGLTVGLYTSPFIMRFNER 82 Query: 68 FRLGVKGGRGRLVEDVELLD-------VFRRVRRVKSAQNLTIFELSIATALVLFSKYPA 120 + + D L++ R+++ ++ N+T FE A F + Sbjct: 83 IMIDH-----EPIPDAALVNAVAFVRAALERLQQQQADFNVTEFEFITALGYWYFRQRQV 137 Query: 121 DCAIIEVGLGGSLDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGIIKPGCPVV 180 D A+IEVG+GG D+TN+I VSV+T ++LDH+K+LG+T++AIAK K+GIIK G PVV Sbjct: 138 DVAVIEVGIGGDTDSTNVI-TPVVSVLTEVALDHQKLLGHTITAIAKHKAGIIKRGIPVV 196 Query: 181 IGHQVYDEVREILVSK----AEKMGCPYNVYGDDFYAFEKNKCLVYQDKISQTNLTVLGL 236 G+ V D + ++ + + + Y+D+ + + + L Sbjct: 197 TGNLVPDAAAVVAAKVATTGSQWLRFDRDFSVPKAKLHGWGQRFTYEDQDGRISDLEVPL 256 Query: 237 VGEHQYINAATAICAVQMAGFTLEKECINAALQSVQWFGRLQKITEGPLLNKLPDHSEVW 296 VG++Q N A AI ++ E ++ L K+ D + Sbjct: 257 VGDYQQRNMAIAIQTAKVYAKQTEWPLTPQNIRQGLAASH-----WPARLEKISDTPLIV 311 Query: 297 IDGGHNPNAGLVVSKEISKLKGSSNKPFYLVIGMVEGKKYGRYLEAFVELSPIVLSVSLI 356 IDG HNP+ + + +L ++ G++ K Y + V V + Sbjct: 312 IDGAHNPDGINGLITALKQLFSQP---ITVIAGILADKDYAAMADRLTAAFSTVYLVPV- 367 Query: 357 CRGRERQSISITPKVLMQEAKKLGFQAMACSSMIEALSRVRKINEELPPPLILIAGSLYL 416 ++ P+ + + + S EAL+ ++P I+I GSLYL Sbjct: 368 ----PGTPRAL-PEAGYEALHEGRLK----DSWQEALA---ASLNDVPDQPIVITGSLYL 415 Query: 417 AGEALR-ENG 425 A + G Sbjct: 416 ASAVRQTLLG 425 |
>gi|15988306|pdb|1JBV|A Chain A, Fpgs-Amppcp Complex Length = 428 | Back alignment and structure |
Score = 180 bits (456), Expect = 4e-43, Method: Composition-based stats. Identities = 118/430 (27%), Positives = 195/430 (45%), Gaps = 40/430 (9%) Query: 8 KMGYLLEDLGRPQDRLPPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNER 67 ++ LL LG PQ + IH+ GTNGKGS A+ +LE SGL+V ++TSP ++R+NER Sbjct: 24 RILTLLHALGNPQQQ-GRYIHVTGTNGKGSAANAIAHVLEASGLTVGLYTSPFIMRFNER 82 Query: 68 FRLGVKGGRGRLVEDVELLD-------VFRRVRRVKSAQNLTIFELSIATALVLFSKYPA 120 + + D L++ R+++ ++ N+T FE A A F + Sbjct: 83 IMIDH-----EPIPDAALVNAVAFVRAALERLQQQQADFNVTEFEFITALAYWYFRQRQV 137 Query: 121 DCAIIEVGLGGSLDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGIIKPGCPVV 180 D A+IEVG+GG D+TN+I VSV+T ++LDH+K+LG+T++AIAK +GIIK G PVV Sbjct: 138 DVAVIEVGIGGDTDSTNVI-TPVVSVLTEVALDHQKLLGHTITAIAKHXAGIIKRGIPVV 196 Query: 181 IGHQVYDEVREILVSK----AEKMGCPYNVYGDDFYAFEKNKCLVYQDKISQTNLTVLGL 236 G+ V D + ++ + + + Y+D+ + + + L Sbjct: 197 TGNLVPDAAAVVAAKVATTGSQWLRFDRDFSVPKAKLHGWGQRFTYEDQDGRISDLEVPL 256 Query: 237 VGEHQYINAATAICAVQMAGFTLEKECINAALQSVQWFGRLQKITEGPLLNKLPDHSEVW 296 VG++Q N A AI ++ E ++ L K+ D + Sbjct: 257 VGDYQQRNMAIAIQTAKVYAKQTEWPLTPQNIRQGLAASH-----WPARLEKISDTPLIV 311 Query: 297 IDGGHNPNAGLVVSKEISKLKGSSNKPFYLVIGMVEGKKYGRYLEAFVELSPIVLSVSLI 356 IDG HNP+ + + +L ++ G++ K Y + V V + Sbjct: 312 IDGAHNPDGINGLITALKQLFSQP---ITVIAGILADKDYAAMADRLTAAFSTVYLVPV- 367 Query: 357 CRGRERQSISITPKVLMQEAKKLGFQAMACSSMIEALSRVRKINEELPPPLILIAGSLYL 416 ++ P+ + + + S EAL+ ++P I+I GSLYL Sbjct: 368 ----PGTPRAL-PEAGYEALHEGRLK----DSWQEALA---ASLNDVPDQPIVITGSLYL 415 Query: 417 AGEALR-ENG 425 A + G Sbjct: 416 ASAVRQTLLG 425 |
>gi|110590230|pdb|2GC5|A Chain A, G51s Mutant Of L. Casei Fpgs Length = 428 | Back alignment and structure |
Score = 177 bits (449), Expect = 3e-42, Method: Composition-based stats. Identities = 116/430 (26%), Positives = 193/430 (44%), Gaps = 40/430 (9%) Query: 8 KMGYLLEDLGRPQDRLPPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNER 67 ++ LL LG PQ + IH+ GTNGK S A+ +LE SGL+V ++TSP ++R+NER Sbjct: 24 RILTLLHALGNPQQQ-GRYIHVTGTNGKSSAANAIAHVLEASGLTVGLYTSPFIMRFNER 82 Query: 68 FRLGVKGGRGRLVEDVELLD-------VFRRVRRVKSAQNLTIFELSIATALVLFSKYPA 120 + + D L++ R+++ ++ N+T FE A F + Sbjct: 83 IMIDH-----EPIPDAALVNAVAFVRAALERLQQQQADFNVTEFEFITALGYWYFRQRQV 137 Query: 121 DCAIIEVGLGGSLDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGIIKPGCPVV 180 D A+IEVG+GG D+TN+I VSV+T ++LDH+K+LG+T++AIAK +GIIK G PVV Sbjct: 138 DVAVIEVGIGGDTDSTNVI-TPVVSVLTEVALDHQKLLGHTITAIAKHXAGIIKRGIPVV 196 Query: 181 IGHQVYDEVREILVSK----AEKMGCPYNVYGDDFYAFEKNKCLVYQDKISQTNLTVLGL 236 G+ V D + ++ + + + Y+D+ + + + L Sbjct: 197 TGNLVPDAAAVVAAKVATTGSQWLRFDRDFSVPKAKLHGWGQRFTYEDQDGRISDLEVPL 256 Query: 237 VGEHQYINAATAICAVQMAGFTLEKECINAALQSVQWFGRLQKITEGPLLNKLPDHSEVW 296 VG++Q N A AI ++ E ++ L K+ D + Sbjct: 257 VGDYQQRNMAIAIQTAKVYAKQTEWPLTPQNIRQGLAASH-----WPARLEKISDTPLIV 311 Query: 297 IDGGHNPNAGLVVSKEISKLKGSSNKPFYLVIGMVEGKKYGRYLEAFVELSPIVLSVSLI 356 IDG HNP+ + + +L ++ G++ K Y + V V + Sbjct: 312 IDGAHNPDGINGLITALKQLFSQP---ITVIAGILADKDYAAMADRLTAAFSTVYLVPV- 367 Query: 357 CRGRERQSISITPKVLMQEAKKLGFQAMACSSMIEALSRVRKINEELPPPLILIAGSLYL 416 ++ P+ + + + S EAL+ ++P I+I GSLYL Sbjct: 368 ----PGTPRAL-PEAGYEALHEGRLK----DSWQEALA---ASLNDVPDQPIVITGSLYL 415 Query: 417 AGEALR-ENG 425 A + G Sbjct: 416 ASAVRQTLLG 425 |
>gi|110590235|pdb|2GCB|A Chain A, G51sS52T DOUBLE MUTANT OF L. CASEI FPGS Length = 428 | Back alignment and structure |
Score = 177 bits (447), Expect = 5e-42, Method: Composition-based stats. Identities = 117/430 (27%), Positives = 195/430 (45%), Gaps = 40/430 (9%) Query: 8 KMGYLLEDLGRPQDRLPPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNER 67 ++ LL LG PQ + IH+ GTNGK + A+ +LE SGL+V ++TSP ++R+NER Sbjct: 24 RILTLLHALGNPQQQ-GRYIHVTGTNGKSTAANAIAHVLEASGLTVGLYTSPFIMRFNER 82 Query: 68 FRLGVKGGRGRLVEDVELLD-------VFRRVRRVKSAQNLTIFELSIATALVLFSKYPA 120 + + D L++ R+++ ++ N+T FE A F + Sbjct: 83 IMIDH-----EPIPDAALVNAVAFVRAALERLQQQQADFNVTEFEFITALGYWYFRQRQV 137 Query: 121 DCAIIEVGLGGSLDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGIIKPGCPVV 180 D A+IEVG+GG D+TN+I VSV+TS++LDH+K+LG+T++AIAK K+GIIK G PVV Sbjct: 138 DVAVIEVGIGGDTDSTNVI-TPVVSVLTSVALDHQKLLGHTITAIAKHKAGIIKRGIPVV 196 Query: 181 IGHQVYDEVREILVSK----AEKMGCPYNVYGDDFYAFEKNKCLVYQDKISQTNLTVLGL 236 G+ V D + ++ + + + Y+D+ + + + L Sbjct: 197 TGNLVPDAAAVVAAKVATTGSQWLRFDRDFSVPKAKLHGWGQRFTYEDQDGRISDLEVPL 256 Query: 237 VGEHQYINAATAICAVQMAGFTLEKECINAALQSVQWFGRLQKITEGPLLNKLPDHSEVW 296 VG++Q N A AI ++ E ++ L K+ D + Sbjct: 257 VGDYQQRNMAIAIQTAKVYAKQTEWPLTPQNIRQGLAASH-----WPARLEKISDTPLIV 311 Query: 297 IDGGHNPNAGLVVSKEISKLKGSSNKPFYLVIGMVEGKKYGRYLEAFVELSPIVLSVSLI 356 IDG HNP+ + + +L ++ G++ K Y + V V + Sbjct: 312 IDGAHNPDGINGLITALKQLFSQP---ITVIAGILADKDYAAMADRLTAAFSTVYLVPV- 367 Query: 357 CRGRERQSISITPKVLMQEAKKLGFQAMACSSMIEALSRVRKINEELPPPLILIAGSLYL 416 ++ P+ + + + S EAL+ ++P I+I GSLYL Sbjct: 368 ----PGTPRAL-PEAGYEALHEGRLK----DSWQEALA---ASLNDVPDQPIVITGSLYL 415 Query: 417 AGEALR-ENG 425 A + G Sbjct: 416 ASAVRQTLLG 425 |
>gi|110590231|pdb|2GC6|A Chain A, S73a Mutant Of L. Casei Fpgs Length = 428 | Back alignment and structure |
Score = 176 bits (445), Expect = 7e-42, Method: Composition-based stats. Identities = 116/430 (26%), Positives = 194/430 (45%), Gaps = 40/430 (9%) Query: 8 KMGYLLEDLGRPQDRLPPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNER 67 ++ LL LG PQ + IH+ GTNGKGS A+ +LE SGL+V ++T+P ++R+NER Sbjct: 24 RILTLLHALGNPQQQ-GRYIHVTGTNGKGSAANAIAHVLEASGLTVGLYTAPFIMRFNER 82 Query: 68 FRLGVKGGRGRLVEDVELLD-------VFRRVRRVKSAQNLTIFELSIATALVLFSKYPA 120 + + D L++ R+++ ++ N+T FE A F + Sbjct: 83 IMIDH-----EPIPDAALVNAVAFVRAALERLQQQQADFNVTEFEFITALGYWYFRQRQV 137 Query: 121 DCAIIEVGLGGSLDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGIIKPGCPVV 180 D A+IEVG+GG D+TN+I VSV+T ++LDH+K+LG+T++AIAK +GIIK G PVV Sbjct: 138 DVAVIEVGIGGDTDSTNVI-TPVVSVLTEVALDHQKLLGHTITAIAKHXAGIIKRGIPVV 196 Query: 181 IGHQVYDEVREILVSK----AEKMGCPYNVYGDDFYAFEKNKCLVYQDKISQTNLTVLGL 236 G+ V D + ++ + + + Y+D+ + + + L Sbjct: 197 TGNLVPDAAAVVAAKVATTGSQWLRFDRDFSVPKAKLHGWGQRFTYEDQDGRISDLEVPL 256 Query: 237 VGEHQYINAATAICAVQMAGFTLEKECINAALQSVQWFGRLQKITEGPLLNKLPDHSEVW 296 VG++Q N A AI ++ E ++ L K+ D + Sbjct: 257 VGDYQQRNMAIAIQTAKVYAKQTEWPLTPQNIRQGLAASH-----WPARLEKISDTPLIV 311 Query: 297 IDGGHNPNAGLVVSKEISKLKGSSNKPFYLVIGMVEGKKYGRYLEAFVELSPIVLSVSLI 356 IDG HNP+ + + +L ++ G++ K Y + V V + Sbjct: 312 IDGAHNPDGINGLITALKQLFSQP---ITVIAGILADKDYAAMADRLTAAFSTVYLVPV- 367 Query: 357 CRGRERQSISITPKVLMQEAKKLGFQAMACSSMIEALSRVRKINEELPPPLILIAGSLYL 416 ++ P+ + + + S EAL+ ++P I+I GSLYL Sbjct: 368 ----PGTPRAL-PEAGYEALHEGRLK----DSWQEALA---ASLNDVPDQPIVITGSLYL 415 Query: 417 AGEALR-ENG 425 A + G Sbjct: 416 ASAVRQTLLG 425 |
gi|193506585|pdb|2VOR|A Chain A, Crystal Structures Of Mycobacterium Tuberculosis Folylpolyglutamate Synthase Complexed With Adp And Amppcp Length = 487 | Back alignment and structure |
Score = 157 bits (396), Expect = 3e-36, Method: Composition-based stats. Identities = 103/463 (22%), Positives = 169/463 (36%), Gaps = 65/463 (14%) Query: 4 DSLLKMGYLLEDLGRPQDRLPPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIR 63 SL ++ L++ LG PQ P IHI GTNGK SVA L+ TSPHL Sbjct: 45 PSLTRISALMDLLGSPQRSYPS-IHIAGTNGKTSVARMVDALVTALHRRTGRTTSPHLQS 103 Query: 64 WNERFRLGVKGGRGRLVEDVELLDVFRRVRR-------------VKSAQNLTIFELSIAT 110 ER + G+ + + + +R + K ++ FE+ A Sbjct: 104 PVERISID-----GKPISPAQYVATYREIEPLVALIDQQSQASAGKGGPAMSKFEVLTAM 158 Query: 111 ALVLFSKYPADCAIIEVGLGGSLDATNIIEKVAVSVITSISLDHEKILGNTV-----SAI 165 A F+ P D A++EVG+GG DATN+I V+VIT IS+DH LG + Sbjct: 159 AFAAFADAPVDVAVVEVGMGGRWDATNVINAP-VAVITPISIDHVDYLGADIAGIAGEKA 217 Query: 166 AKDKSGIIKPGCPVVIGHQVYDEVREI-----LVSKAEKMGCPYNVYGDDFYAFEKNKCL 220 V + + +V E+ + + A + L Sbjct: 218 GIITRAPDGSPDTVAVIGRQVPKVMEVLLAESVRADASVAREDSEFAVLRRQIAVGGQVL 277 Query: 221 VYQDKISQTNLTVLGLVGEHQYINAATAICAVQMAG-----FTLEKECINAALQSVQWFG 275 Q + L L GEHQ NA A+ +V+ L+ + + A +V G Sbjct: 278 QLQGLGGVYSDIYLPLHGEHQAHNAVLALASVEAFFGAGAQRQLDGDAVRAGFAAVTSPG 337 Query: 276 RLQKITEGPLLNKLPDHSEVWIDGGHNPNAGLVVSKEISKLKGSSNKPFYLVIGMVEGKK 335 RL+++ P V+ID HNP +++ ++ V+ ++ K Sbjct: 338 RLERMRSAP---------TVFIDAAHNPAGASALAQTLAHEFDFR--FLVGVLSVLGDKD 386 Query: 336 YGRYLEAFVELSPIVLSVSLICRGRERQSISITPKVLMQEAKKLG--FQAMACSSMIEAL 393 L A + V+ ++ + L A + + ++ +A+ Sbjct: 387 VDGILAALEPVFDSVVVT------HNGSPRALDVEALALAAGERFGPDRVRTAENLRDAI 440 Query: 394 SRVRKINEELPPPL-----------ILIAGSLYLAGEALRENG 425 + ++ I+I GS+ AG A G Sbjct: 441 DVATSLVDDAAADPDVAGDAFSRTGIVITGSVVTAGAARTLFG 483 |
>gi|193506586|pdb|2VOS|A Chain A, Mycobacterium Tuberculosis Folylpolyglutamate Synthase Complexed With Adp Length = 487 | Back alignment and structure |
Score = 137 bits (345), Expect = 3e-30, Method: Composition-based stats. Identities = 103/463 (22%), Positives = 165/463 (35%), Gaps = 65/463 (14%) Query: 4 DSLLKMGYLLEDLGRPQDRLPPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIR 63 SL ++ L + LG PQ P IHI GTNGK SVA L+ TSPHL Sbjct: 45 PSLTRISALXDLLGSPQRSYPS-IHIAGTNGKTSVARXVDALVTALHRRTGRTTSPHLQS 103 Query: 64 WNERFRLGVKGGRGRLVEDVELLDVFRRVRR-------------VKSAQNLTIFELSIAT 110 ER + G+ + + + +R + K + FE+ A Sbjct: 104 PVERISID-----GKPISPAQYVATYREIEPLVALIDQQSQASAGKGGPAXSKFEVLTAX 158 Query: 111 ALVLFSKYPADCAIIEVGLGGSLDATNIIEKVAVSVITSISLDHEKILGNTV-----SAI 165 A F+ P D A++EVG GG DATN+I V+VIT IS+DH LG + Sbjct: 159 AFAAFADAPVDVAVVEVGXGGRWDATNVINAP-VAVITPISIDHVDYLGADIAGIAGEKA 217 Query: 166 AKDKSGIIKPGCPVVIGHQVYDEVREI-----LVSKAEKMGCPYNVYGDDFYAFEKNKCL 220 V + + +V E+ + + A + L Sbjct: 218 GIITRAPDGSPDTVAVIGRQVPKVXEVLLAESVRADASVAREDSEFAVLRRQIAVGGQVL 277 Query: 221 VYQDKISQTNLTVLGLVGEHQYINAATAICAVQMAG-----FTLEKECINAALQSVQWFG 275 Q + L L GEHQ NA A+ +V+ L+ + + A +V G Sbjct: 278 QLQGLGGVYSDIYLPLHGEHQAHNAVLALASVEAFFGAGAQRQLDGDAVRAGFAAVTSPG 337 Query: 276 RLQKITEGPLLNKLPDHSEVWIDGGHNPNAGLVVSKEISKLKGSSNKPFYLVIGMVEGKK 335 RL++ P V+ID HNP +++ ++ V+ ++ K Sbjct: 338 RLERXRSAP---------TVFIDAAHNPAGASALAQTLAHEFDFR--FLVGVLSVLGDKD 386 Query: 336 YGRYLEAFVELSPIVLSVSLICRGRERQSISITPKVLMQEAKKLG--FQAMACSSMIEAL 393 L A + V+ ++ + L A + + ++ +A+ Sbjct: 387 VDGILAALEPVFDSVVVT------HNGSPRALDVEALALAAGERFGPDRVRTAENLRDAI 440 Query: 394 SRVRKINEELPPPL-----------ILIAGSLYLAGEALRENG 425 + ++ I+I GS+ AG A G Sbjct: 441 DVATSLVDDAAADPDVAGDAFSRTGIVITGSVVTAGAARTLFG 483 |
>gi|281306936|pdb|2WTZ|A Chain A, Mure Ligase Of Mycobacterium Tuberculosis Length = 535 | Back alignment and structure |
Score = 69.1 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 43/121 (35%), Gaps = 12/121 (9%) Query: 296 WIDGGHNPNAGLVVSKEISKLKGSSNKPFYLVIGMVEGKKYGR---YLEAFVELSPIVLS 352 +D H P A V ++ +V G + G+ +L+ +V+ Sbjct: 390 LVDYAHKPEALRSVL----TTLAHPDRRLAVVFGAGGDRDPGKRAPMGRIAAQLADLVVV 445 Query: 353 VSLICRGRERQSISITPKVLMQEAKKLGF-QAMACSSMIEALSRVRKINEELPPPLILIA 411 R + +I ++L A+ G Q + + +A+ P ++LIA Sbjct: 446 TDDNPRDEDPT--AIRREILAGAAEVGGDAQVVEIADRRDAIRHAVAWA--RPGDVVLIA 501 Query: 412 G 412 G Sbjct: 502 G 502 |
>gi|15988379|pdb|1E8C|A Chain A, Structure Of Mure The Udp-N-Acetylmuramyl Tripeptide Synthetase From E. Coli Length = 498 | Back alignment and structure |
Score = 64.5 bits (155), Expect = 3e-08, Method: Composition-based stats. Identities = 42/296 (14%), Positives = 83/296 (28%), Gaps = 14/296 (4%) Query: 122 CAIIEVGLGGSLDATNIIEKVAVSVITSISLDHEKILGN--TVSAIAKDKSGIIKPGCPV 179 EV G + K A SV T++S DH G+ A G + Sbjct: 178 FCAXEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDXEHYEAAXWLLYSEHHCGQAI 237 Query: 180 VIGHQVYDEVREILVSKAEKMGCPYNVYGDDFYAFEKNKCLVYQDKISQTNLTVLGLVGE 239 + + A + ++ + + K + Y D + + GE Sbjct: 238 INADDEVGRRWLAKLPDAVAVSXEDHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGE 297 Query: 240 HQYINAATAICAVQMAGFTLEKECINAALQSVQWFGRLQKITEGPLLNKLPDHSEVWIDG 299 + + + ++ RLQ + + P V +D Sbjct: 298 IESHLXGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRXEVFTAPGKPTVVVDY 357 Query: 300 GHNPNAGLVVSKEISKLKGSSNKPFYLVIGMVEGKKYGRY---LEAFVELSPIVLSVSLI 356 H P+A + + + V G + G+ E + + + Sbjct: 358 AHTPDALEKALQ---AARLHCAGKLWCVFGCGGDRDKGKRPLXGAIAEEFADVAVVTDDN 414 Query: 357 CRGRERQSISITPKVLMQEAKKLGFQAMACSSMIEALSRVRKINEELPPPLILIAG 412 R + +I +L A EA++ + ++L+AG Sbjct: 415 PRTE--EPRAIINDILAGXLDA--GHAKVXEGRAEAVTCAV--XQAKENDVVLVAG 464 |
Homologous Structures in PDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
Identity | Alignment graph | Length | Definition | E-value |
Target | 429 | FolC bifunctional protein [Candidatus Liberibacter asia | ||
1jbw_A | 428 | Folylpolyglutamate synthase; FPGS folate AMPPCP ternary | 2e-56 | |
1o5z_A | 442 | Folylpolyglutamate synthase/dihydrofolate synthase; TM0 | 1e-55 | |
3nrs_A | 437 | Dihydrofolate:folylpolyglutamate synthetase; structural | 1e-54 | |
2vos_A | 487 | Folylpolyglutamate synthase protein FOLC; ligase, confo | 3e-40 | |
1w78_A | 422 | FOLC bifunctional protein; DHFS, dihydrofolate synthase | 1e-33 | |
1e8c_A | 498 | UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopim | 6e-29 | |
2wtz_A | 535 | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-diamino | 3e-18 | |
3lk7_A | 451 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalac | 9e-08 | |
1j6u_A | 469 | UDP-N-acetylmuramate-alanine ligase MURC; structural ge | 1e-06 | |
1p3d_A | 475 | UDP-N-acetylmuramate--alanine ligase; alpha/beta protei | 3e-06 | |
1gg4_A | 452 | UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimel | 7e-05 |
>1jbw_A Folylpolyglutamate synthase; FPGS folate AMPPCP ternary complex, ligase; HET: KCX ACQ TMF; 1.85A {Lactobacillus casei} SCOP: c.59.1.2 c.72.2.2 PDB: 1fgs_A* 1jbv_A* 2gca_A 2gc5_A* 2gc6_A* 2gcb_A Length = 428 | Back alignment and structure |
---|
Score = 215 bits (547), Expect = 2e-56 Identities = 128/434 (29%), Positives = 210/434 (48%), Gaps = 49/434 (11%) Query: 5 SLLKMGYLLEDLGRPQDRLPPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRW 64 ++ LL LG PQ + IH+ GTNGKGS A+ +LE SGL+V ++TSP ++R+ Sbjct: 21 DHRRILTLLHALGNPQQQGR-YIHVTGTNGKGSAANAIAHVLEASGLTVGLYTSPFIMRF 79 Query: 65 NERFRLGVKGGRGRLVEDVELLDV-------FRRVRRVKSAQNLTIFELSIATALVLFSK 117 NER + + D L++ R+++ ++ N+T FE A A F + Sbjct: 80 NERIMID-----HEPIPDAALVNAVAFVRAALERLQQQQADFNVTEFEFITALAYWYFRQ 134 Query: 118 YPADCAIIEVGLGGSLDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGIIKPGC 177 D A+IEVG+GG D+TN+I V VSV+T ++LDH+K+LG+T++AIAK K+GIIK G Sbjct: 135 RQVDVAVIEVGIGGDTDSTNVITPV-VSVLTEVALDHQKLLGHTITAIAKHKAGIIKRGI 193 Query: 178 PVVIGHQVYDEVREILVSKAEKMGCPYNVYGDDFY-----AFEKNKCLVYQDKISQTNLT 232 PVV G+ + ++ +K G + + DF + Y+D+ + + Sbjct: 194 PVVTGNL-VPDAAAVVAAKVATTGSQWLRFDRDFSVPKAKLHGWGQRFTYEDQDGRISDL 252 Query: 233 VLGLVGEHQYINAATAICAVQMAGFTLEKEC----INAALQSVQWFGRLQKITEGPLLNK 288 + LVG++Q N A AI ++ E I L + W RL+KI++ PL Sbjct: 253 EVPLVGDYQQRNMAIAIQTAKVYAKQTEWPLTPQNIRQGLAASHWPARLEKISDTPL--- 309 Query: 289 LPDHSEVWIDGGHNPNAGLVVSKEISKLKGSSNKPFYLVIGMVEGKKYGRYLEAFVELSP 348 + IDG HNP+ + + +L ++P ++ G++ K Y + L+ Sbjct: 310 ------IVIDGAHNPDGINGLITALKQLF---SQPITVIAGILADKDYAAMAD---RLTA 357 Query: 349 IVLSVSLICRGRERQSISITPKVLMQEAKKLGFQAMACSSMIEALSRVRKINEELPPPLI 408 +V L+ +++ + + + S EAL ++P I Sbjct: 358 AFSTVYLVPVPGTPRALP-------EAGYEALHEGRLKDSWQEAL---AASLNDVPDQPI 407 Query: 409 LIAGSLYLAGEALR 422 +I GSLYLA + Sbjct: 408 VITGSLYLASAVRQ 421 |
>1o5z_A Folylpolyglutamate synthase/dihydrofolate synthase; TM0166, structural genomics, JCSG, PSI, protein structure initiative; 2.10A {Thermotoga maritima} SCOP: c.59.1.2 c.72.2.2 Length = 442 | Back alignment and structure |
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Score = 212 bits (540), Expect = 1e-55 Identities = 115/423 (27%), Positives = 183/423 (43%), Gaps = 32/423 (7%) Query: 5 SLLKMGYLLEDLGRPQDRLPPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRW 64 L ++ LL LG P IHIGGTNGKGSVA+ +L + G V + SPHL + Sbjct: 34 GLERISMLLSKLGNPHLEYK-TIHIGGTNGKGSVANMVSNILVSQGYRVGSYYSPHLSTF 92 Query: 65 NERFRL-GVKGGRGRLVEDVELLDVFRRVRRVKSAQNLTIFELSIATALVLFSKYPADCA 123 ER RL +V+ E ++ + + + FE+ A A + F++ D A Sbjct: 93 RERIRLNEEYISEEDVVKIYETMEPILNELDKEEIFSPSFFEVVTAMAFLYFAEKNVDIA 152 Query: 124 IIEVGLGGSLDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGIIKPGCPVVIGH 183 ++EVGLGG LDATN++ + I ++ DHEK LG T+ IA +KSGIIK P+V G Sbjct: 153 VLEVGLGGRLDATNVVFPLCS-TIVTVDRDHEKTLGYTIEQIAWEKSGIIKERVPLVTGE 211 Query: 184 QVYDEVREILVSKAEKMGCPYNVYGDDFYA----FEKNKCLVYQDKISQTNLTVLGLVGE 239 + E +++ A K V DF + ++ + VL + G Sbjct: 212 R-KREALKVMEDVARKKSSRMYVIDKDFSVKVKSLKLHENRFDYCGENTFEDLVLTMNGP 270 Query: 240 HQYINAATAICAVQMAGFTLEKECINAALQSVQWFGRLQKITEGPLLNKLPDHSEVWIDG 299 HQ NA A+ ++ G L ++ I L++ + GR + + + +DG Sbjct: 271 HQIENAGVALKTLEATGLPLSEKAIREGLKNAKNLGRFEILE--------KNGKMYILDG 322 Query: 300 GHNPNAGLVVSKEISKLKGSSNKPFYLVIGMVEGKKYGRYLEAFVELSPIVLSVSLICRG 359 HNP+ + + + + +P LVIG+++ K L + + I V + Sbjct: 323 AHNPHGAESLVRSLKLYF--NGEPLSLVIGILDDKNREDILR---KYTGIFERVIVTRVP 377 Query: 360 RERQSISITPKVLMQEAKKLGFQAMACSSMIEALSRVRKINEELPPPLILIAGSLYLAGE 419 R L+ AKK +EA+ + ++ GSL+L G Sbjct: 378 SPR---MKDMNSLVDMAKKFFKNVEVIEDPLEAIESTERA--------TVVTGSLFLVGY 426 Query: 420 ALR 422 Sbjct: 427 VRE 429 |
>3nrs_A Dihydrofolate:folylpolyglutamate synthetase; structural genomics, center for structural genomics of infec diseases, csgid; HET: TLA MES; 1.80A {Yersinia pestis} PDB: 3n2a_A* Length = 437 | Back alignment and structure |
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Score = 208 bits (531), Expect = 1e-54 Identities = 108/432 (25%), Positives = 180/432 (41%), Gaps = 46/432 (10%) Query: 5 SLLKMGYLLEDLGRPQDRLPPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRW 64 L ++ + E L + + + GTNGKG+ + +L +GL V V++SPHL+R+ Sbjct: 34 GLERVKQVAERLDLLKPAPK-IFTVAGTNGKGTTCCTLEAILLAAGLRVGVYSSPHLLRY 92 Query: 65 NERFRLGVKGGRGRLVEDVELLDVFRRVRRVKSAQNLTIFELSIATALVLFSKYPADCAI 124 ER R+ G+ + + E F ++ + +LT FE +AL LF + D I Sbjct: 93 TERVRIQ-----GQELSEAEHSHSFAQIEAGRGDISLTYFEFGTLSALQLFKQAKLDVVI 147 Query: 125 IEVGLGGSLDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGIIKPGCPVVIGHQ 184 +EVGLGG LDATNI++ V+ ITSI+LDH LG +I ++K+G+ + G P V+G Sbjct: 148 LEVGLGGRLDATNIVDSD-VAAITSIALDHTDWLGYDRESIGREKAGVFRGGKPAVVGEP 206 Query: 185 VYDEVREILVSKAEKMGCPYNVYGDDFYAFEKNKCLVYQDKISQTNLTVLGLVGEHQYI- 243 + A ++G + F + + Q+ + Q GE Q Sbjct: 207 DMPQSIAD---VAAELGAQLYRRDVAWK-FSQQEPFDQQEPVDQQINGWHWQCGERQLTG 262 Query: 244 ---------NAATAICAVQMAGFTLEKECINAALQSVQWFGRLQKITEGPLLNKLPDHSE 294 NAATA+ + + L E I LQ+ GR Q ++E P Sbjct: 263 LPVPNVPLANAATALAVLHYSELPLSDEAIRQGLQAASLPGRFQVVSEQP---------L 313 Query: 295 VWIDGGHNPNAGLVVSKEISKLKGSSN----KPFYLVIGMVEGKKYGRYLEAFVELSPIV 350 + +D HNP+A + ++++ N V+GM+ K L LS V Sbjct: 314 LILDVAHNPHAARYLVNRLAQVINPVNASKQGKVRAVVGMLSDKDIAGTLA---CLSERV 370 Query: 351 LSVSLICRGRERQSISITPKVLMQEAKKLGFQAMACSSMIEALSRVRKINEELPPPLILI 410 R + L + A S + A + + + ++++ Sbjct: 371 DEWYCAPLEGPR---GASAGQLAEHLVS----ARQFSDVETAWRQAMQDAD--TQDVVIV 421 Query: 411 AGSLYLAGEALR 422 GS + + Sbjct: 422 CGSFHTVAHVMA 433 |
>2vos_A Folylpolyglutamate synthase protein FOLC; ligase, conformational change, peptidoglycan synthesis, cell division, cobalt binding; HET: ADP; 2.0A {Mycobacterium tuberculosis} PDB: 2vor_A* Length = 487 | Back alignment and structure |
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Score = 161 bits (407), Expect = 3e-40 Identities = 109/457 (23%), Positives = 176/457 (38%), Gaps = 55/457 (12%) Query: 5 SLLKMGYLLEDLGRPQDRLPPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRW 64 SL ++ L++ LG PQ P IHI GTNGK SVA L+ TSPHL Sbjct: 46 SLTRISALMDLLGSPQRSYP-SIHIAGTNGKTSVARMVDALVTALHRRTGRTTSPHLQSP 104 Query: 65 NERFRLGVKGGRGRLVEDVELLDVFRRVRRV-------------KSAQNLTIFELSIATA 111 ER + G+ + + + +R + + K ++ FE+ A A Sbjct: 105 VERISID-----GKPISPAQYVATYREIEPLVALIDQQSQASAGKGGPAMSKFEVLTAMA 159 Query: 112 LVLFSKYPADCAIIEVGLGGSLDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSG 171 F+ P D A++EVG+GG DATN+I V+VIT IS+DH LG ++ IA +K+G Sbjct: 160 FAAFADAPVDVAVVEVGMGGRWDATNVINAP-VAVITPISIDHVDYLGADIAGIAGEKAG 218 Query: 172 IIKPGCPVVIG-----HQVYDEVREILVSKAEKMGCPYNVYGDDFYAFEKNKCL-----V 221 II + +V E+L++++ + +F + + Sbjct: 219 IITRAPDGSPDTVAVIGRQVPKVMEVLLAESVRADASVAREDSEFAVLRRQIAVGGQVLQ 278 Query: 222 YQDKISQTNLTVLGLVGEHQYINAATAICAVQMAGFTLEKECINAALQSVQWFGRLQKIT 281 Q + L L GEHQ NA A+ +V+ L +T Sbjct: 279 LQGLGGVYSDIYLPLHGEHQAHNAVLALASVEAF----FGAGAQRQLDGDAVRAGFAAVT 334 Query: 282 EGPLLNKLPDHSEVWIDGGHNPNAGLVVSKEISKLKGSSNKPFYLVIGMVEGKKYGRYLE 341 L ++ V+ID HNP + + V+ ++ K L Sbjct: 335 SPGRLERMRSAPTVFIDAAHNPAGASA--LAQTLAHEFDFRFLVGVLSVLGDKDVDGILA 392 Query: 342 AFVELSPIVLSVSLICRGRERQSISITPKVLMQEAKKLGF--QAMACSSMIEALSRVRKI 399 A L P+ SV + G R ++ + L A + + ++ +A+ + Sbjct: 393 A---LEPVFDSVVVTHNGSPR---ALDVEALALAAGERFGPDRVRTAENLRDAIDVATSL 446 Query: 400 NEEL-----------PPPLILIAGSLYLAGEALRENG 425 ++ I+I GS+ AG A G Sbjct: 447 VDDAAADPDVAGDAFSRTGIVITGSVVTAGAARTLFG 483 |
>1w78_A FOLC bifunctional protein; DHFS, dihydrofolate synthase, synthase, ATP-binding, folate biosynthesis, ligase, multifunctional enzyme; HET: KCX PD8 ADP; 1.82A {Escherichia coli} PDB: 1w7k_A* Length = 422 | Back alignment and structure |
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Score = 139 bits (350), Expect = 1e-33 Identities = 102/418 (24%), Positives = 168/418 (40%), Gaps = 36/418 (8%) Query: 5 SLLKMGYLLEDLGRPQDRLPPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRW 64 L ++ + LG + P V + GTNGKG+ + +L +G V V++SPHL+R+ Sbjct: 31 GLERVSLVAARLGVLKPA-PFVFTVAGTNGKGTTCRTLESILMAAGYKVGVYSSPHLVRY 89 Query: 65 NERFRLGVKGGRGRLVEDVELLDVFRRVRRVKSAQNLTIFELSIATALVLFSKYPADCAI 124 ER R+ + + + F + + +LT FE +AL LF + D I Sbjct: 90 TERVRVQGQE-----LPESAHTASFAEIESARGDISLTYFEYGTLSALWLFKQAQLDVVI 144 Query: 125 IEVGLGGSLDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGIIKPGCPVVIGHQ 184 +EVGLGG LDATNI++ V+V+TSI+LDH LG +I ++K+GI + P ++G Sbjct: 145 LEVGLGGRLDATNIVDAD-VAVVTSIALDHTDWLGPDRESIGREKAGIFRSEKPAIVGEP 203 Query: 185 VYDEVREILVSKAEKMGCPYNVYGDDFYAFEKNKCLVYQDKISQTNLTVLGLVGEHQYIN 244 + + + V + + L N Sbjct: 204 EMPSTIADVAQEKGALLQRRGVEWNYSVTDHDWAFSDAHGTLENLPLP------LVPQPN 257 Query: 245 AATAICAVQMAGFTLEKECINAALQSVQWFGRLQKITEGPLLNKLPDHSEVWIDGGHNPN 304 AATA+ A++ +G + + I + S GR Q ++E P V D HNP+ Sbjct: 258 AATALAALRASGLEVSENAIRDGIASAILPGRFQIVSESPR---------VIFDVAHNPH 308 Query: 305 AGLVVSKEISKLKGSSNKPFYLVIGMVEGKKYGRYLEAFVELSPIVLSVSLICRGRERQS 364 A ++ + L N VIGM+ K L L +V R Sbjct: 309 AAEYLTGRMKALP--KNGRVLAVIGMLHDKDIAGTLA---WLKSVVDDWYCAPLEGPR-- 361 Query: 365 ISITPKVLMQEAKKLGFQAMACSSMIEALSRVRKINEELPPPLILIAGSLYLAGEALR 422 T + L++ + S+ +A + +L+ GS + + Sbjct: 362 -GATAEQLLEHLGN----GKSFDSVAQAWDAAMADAK--AEDTVLVCGSFHTVAHVME 412 |
>1e8c_A UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase; peptidoglycan biosynthesis; HET: KCX UAG API; 2.0A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1 Length = 498 | Back alignment and structure |
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Score = 123 bits (310), Expect = 6e-29 Identities = 64/425 (15%), Positives = 122/425 (28%), Gaps = 62/425 (14%) Query: 3 ADSLLKMGYLLEDL-GRPQDRLPPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHL 61 + ++ L P D L ++ + GTNGK + + + G V + Sbjct: 87 SQLNERLSALAGRFYHEPSDNLR-LVGVTGTNGKTTTTQLLAQWSQLLGEISAVMGTVGN 145 Query: 62 IRWNERFRLGVKGGRGRLVEDVELLDVFRRVRRVKSAQNLTIFELSIATALVLFSKYPAD 121 + +N T + + L A Sbjct: 146 GLLGKVI----------------------------PTENTTGSAVDVQHELAGLVDQGAT 177 Query: 122 CAIIEVGLGGSLDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGIIKPGCPVVI 181 +EV G + K A SV T++S DH G + K + Sbjct: 178 FCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHG-DMEHYEAAKWLLYSEHHCGQA 236 Query: 182 GHQVYDEVREILVSKAEKM-------GCPYNVYGDDFYA----FEKNKCLVYQDKISQTN 230 DEV ++K N +G A + + + Sbjct: 237 IINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDG 296 Query: 231 LTVLGLVGEHQYINAATAICAVQMAGFTLEKECINAALQSVQWFGRLQKITEGPLLNKLP 290 L+G N A+ + G+ L + + A + GR++ T P Sbjct: 297 EIESHLMGAFNVSNLLLALATLLALGYPLA-DLLKTAARLQPVCGRMEVFTA-------P 348 Query: 291 DHSEVWIDGGHNPNAGLVVSKEISKLKGSSNKPFYLVIGMVEGKKYGRYLEAFVELSPIV 350 V +D H P+A + K + + + V G G + ++ Sbjct: 349 GKPTVVVDYAHTPDA---LEKALQAARLHCAGKLWCVFGCG-GDRDKGKRPLMGAIAEEF 404 Query: 351 LSVSLICRGRERQSISITPKVLMQEAKKLGF---QAMACSSMIEALSRVRKINEELPPPL 407 V+++ R + P+ ++ + A EA++ + + Sbjct: 405 ADVAVVTDDNPR---TEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAK--ENDV 459 Query: 408 ILIAG 412 +L+AG Sbjct: 460 VLVAG 464 |
>2wtz_A UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-diaminopimelate ligase; nucleotide-binding, peptidoglycan synthesis, MURE, cytoplasm; HET: KCX UAG; 3.00A {Mycobacterium tuberculosis} Length = 535 | Back alignment and structure |
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Score = 88.5 bits (218), Expect = 3e-18 Identities = 63/410 (15%), Positives = 123/410 (30%), Gaps = 61/410 (14%) Query: 17 GRPQDRLPPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNERFRLGVKGGR 76 G P +RL VI I GT+GK + + L +G + + + Sbjct: 140 GHPSERLT-VIGITGTSGKTTTTYLVEAGLRAAGRVAGLIGTIGIRVGGADLPSA----- 193 Query: 77 GRLVEDVELLDVFRRVRRVKSAQNLTIFELSIATALVLFSKYPADCAIIEVGLGGSLDAT 136 T ++ L + D ++EV Sbjct: 194 -----------------------LTTPEAPTLQAMLAAMVERGVDTVVMEVSSHALALGR 230 Query: 137 NIIEKVAVSVITSISLDHEKILGNTVS---AIAKDKSGIIKPGCPVVIGHQVYDEVREIL 193 + AV T++S DH + A A + D R + Sbjct: 231 VDGTRFAVGAFTNLSRDHLDFHPSMADYFEAKASLFDPDSALRARTAVVCIDDDAGRAMA 290 Query: 194 VSKAEKMGCPYNVYGDDFYA------FEKNKCLVYQDKISQTNLTVLGLVGEHQYINAAT 247 A+ + + A + D + + L G + N Sbjct: 291 ARAADAITVSAADRPAHWRATDVAPTDAGGQQFTAIDPAGVGHHIGIRLPGRYNVANCLV 350 Query: 248 AICAVQMAGFTLEKECINAALQSVQWFGRLQKITEGPLLNKLPDHSEVWIDGGHNPNAGL 307 A+ + G + E+ L+ ++ GRL++I +D H P A Sbjct: 351 ALAILDTVGVSPEQ--AVPGLREIRVPGRLEQIDR-------GQGFLALVDYAHKPEALR 401 Query: 308 VVSKEISKLKGSSNKPFYLVIGMVEGKKYGRYLEAF---VELSPIVLSVSLICRGRERQS 364 V ++ ++ +V G + G+ +L+ +V+ R + + Sbjct: 402 SVLTTLA----HPDRRLAVVFGAGGDRDPGKRAPMGRIAAQLADLVVVTDDNPRDEDPTA 457 Query: 365 ISITPKVLMQEAKKLGF--QAMACSSMIEALSRVRKINEELPPPLILIAG 412 I + ++ A ++G Q + + +A+ P ++LIAG Sbjct: 458 IR---REILAGAAEVGGDAQVVEIADRRDAIRHAVAWAR--PGDVVLIAG 502 |
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} Length = 451 | Back alignment and structure |
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Score = 53.3 bits (127), Expect = 9e-08 Identities = 42/301 (13%), Positives = 103/301 (34%), Gaps = 32/301 (10%) Query: 114 LFSKYPADCAIIEVGLGGSLDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGII 173 + + D ++E L + ++VIT++ H G+ +A + Sbjct: 155 VQAANDKDTLVME--LSSFQLMGVKEFRPHIAVITNLMPTHLDYHGSFEDYVAAKWNIQN 212 Query: 174 KPGCPVVIGHQVYDEVREILVSKAEKMGCPYNVYGDDFYAFEKNKCLVYQDKISQTNLTV 233 + + + + L + P++ A+ ++K L Y+ + + ++ Sbjct: 213 QMSSSDFLVLNFNQGISKELAKTTKATIVPFSTTEKVDGAYVQDKQLFYKGE-NIMSVDD 271 Query: 234 LGLVGEHQYINAATAICAVQMAGFTLEKECINAALQSVQ-WFGRLQKITEGPLLNKLPDH 292 +G+ G H NA I ++AG + + I L + RLQ + + Sbjct: 272 IGVPGSHNVENALATIAVAKLAGISNQV--IRETLSNFGGVKHRLQSLGK---------V 320 Query: 293 SEVWIDGGHNPNAGLVVSKEISKLKGSSNKPFYLVIGMVEGKKYGRYLEAFVELSPIVLS 352 + L K +S K + G+ G ++ + L +V+ Sbjct: 321 HGISFYNDSKSTNILATQKALSGFDN--TKVILIAGGLDRGNEFDELIPDITGLKHMVV- 377 Query: 353 VSLICRGRERQSISITPKVLMQEAKKLGFQAMACSSMIEALSRVRKINEELPPPLILIAG 412 + + + + A+K G + +A+ + ++ + +IL++ Sbjct: 378 ------------LGESASRVKRAAQKAGVTYSDALDVRDAVHKAYEVAQ--QGDVILLSP 423 Query: 413 S 413 + Sbjct: 424 A 424 |
>1j6u_A UDP-N-acetylmuramate-alanine ligase MURC; structural genomics, TM0231, JCSG, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 Length = 469 | Back alignment and structure |
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Score = 49.9 bits (118), Expect = 1e-06 Identities = 44/284 (15%), Positives = 90/284 (31%), Gaps = 17/284 (5%) Query: 144 VSVITSISLDHEKILGNTVSAIAKDKSGIIKPGCPVVIGHQVYDEVREILVSKAEKMGCP 203 +IT+ DH + GN+++ I + ++ DE+ L + Sbjct: 184 YLIITNARGDHLENYGNSLTRYRSAFEKISRNTD--LVVTFAEDELTSHLGDVTFGVKKG 241 Query: 204 YNVYGDDFYAFEKNKCLVYQDKISQTNLTVLGLVGEHQYINAATAICAVQMAGFTLEKEC 263 + + K +V ++ L L + G H +NA I G+ L Sbjct: 242 TYTLEMRSASRAEQKAMVEKNGKRYLELK-LKVPGFHNVLNALAVIALFDSLGYDLAPVL 300 Query: 264 INAALQSVQWFGRLQKITEGPLLNKLPDHSEVWIDGGHNPNAGLVVSKEISKLKGSSNKP 323 R P + V D H P+ + + ++ N+ Sbjct: 301 EALEEFRGVH-RRFSIAFHDP-----ETNIYVIDDYAHTPDEIRNLLQTAKEVFE--NEK 352 Query: 324 FYLVIGMVEGKKYGRYLEAFVE---LSPIVLSVSLICRGRERQSISITPKVLMQEAKKLG 380 ++ + R F + L+ V+ + E+++ I+ K++ K LG Sbjct: 353 IVVIFQPHRYSRLEREDGNFAKALQLADEVVVTEVYDAFEEKKNG-ISGKMIWDSLKSLG 411 Query: 381 FQAMACSSMIEALSRVRKINEELPPPLILIAGSLYLAGEALREN 424 +A + E + + L + AG + + E Sbjct: 412 KEAYFVEKLPELEKVISVSENTV--FLFVGAGDIIYSSRRFVER 453 |
>1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A* Length = 475 | Back alignment and structure |
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Score = 48.7 bits (115), Expect = 3e-06 Identities = 50/283 (17%), Positives = 91/283 (32%), Gaps = 24/283 (8%) Query: 144 VSVITSISLDHEKILGNTVSAIAKDKSGIIKPGCPVVIGHQVYDEVREILVSKAEKMGCP 203 VSV+T++ DH + + G V +L+ K+G Sbjct: 188 VSVVTNMEPDHMDTYEGDFEKMKATYVKFLHNLPFY--GLAVMCADDPVLMELVPKVGRQ 245 Query: 204 YNVYGDDFYAFEKNKCLVYQDKISQTNLTVL---------GLVGEHQYINAATAICAVQM 254 YG A + + + + G+H +NA A+ + Sbjct: 246 VITYGFSEQADYRIEDYEQTGFQGHYTVICPNNERINVLLNVPGKHNALNATAALAVAKE 305 Query: 255 AGFTLEKECINAALQSVQW-FGRLQKITEGPLLNKLPDHSEVWIDGGHNPNAGLVVSKEI 313 G E I AL Q R ++ E N + D GH+P V K Sbjct: 306 EGIANEA--ILEALADFQGAGRRFDQLGEFIRPN---GKVRLVDDYGHHPTEVGVTIKAA 360 Query: 314 SKLKGSSNKPFYLVIGMVEGKKYGRYLEAFVELSPIVLSVSL--ICRGRERQSISITPKV 371 + G +K ++ + + FV++ V ++ + + E + K Sbjct: 361 REGWG--DKRIVMIFQPHRYSRTRDLFDDFVQVLSQVDALIMLDVYAAGEAPIVGADSKS 418 Query: 372 LMQEAKKLGF-QAMACSSMIEALSRVRKINEELPPPLILIAGS 413 L + + LG + S + + +I + LIL G+ Sbjct: 419 LCRSIRNLGKVDPILVSDTSQLGDVLDQIIQ--DGDLILAQGA 459 |
>1gg4_A UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase...; alpha/beta sheet; 2.30A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1 Length = 452 | Back alignment and structure |
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Score = 43.8 bits (102), Expect = 7e-05 Identities = 46/322 (14%), Positives = 100/322 (31%), Gaps = 41/322 (12%) Query: 121 DCAIIEVGL--GGSLDATNIIEKVAVSVITSISLDHEKILGNTVS-AIAKDKSGIIKPGC 177 D A+IE+G G + T + + +++ +++ H + G+ A AK + P Sbjct: 153 DYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPEN 212 Query: 178 PVVIGHQVYDEVREILVSKAEKMGCPYNVYGDDF------YAFEKNKCLVYQDKISQTNL 231 + I + ++ + ++ + + + + Sbjct: 213 GIAIMNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVD 272 Query: 232 TVLGLVGEHQYINAATAICAVQMAGFTLEK-ECINAALQSVQWFGRLQKITEGPLLNKLP 290 +L L G H NA A G TL+ + A L++V ++ E Sbjct: 273 VLLPLPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAENQ------ 326 Query: 291 DHSEVWIDGGHNPNAGLVVSKEISKLKGSSNKPFYLVIGMVEGKKYGRYLEAFVELSPIV 350 + D + + + + L +V M E V++ Sbjct: 327 ---LLLDDSYNANVGSMTAA--VQVLAEMPGYRVLVVGDMAEL--GAESEACHVQVGEAA 379 Query: 351 LSVS---LICRGRERQSISITPKVLMQEAKKLGFQAMACSSMIEALSRVRKINEELPPPL 407 + ++ G++ + ++R++ + E Sbjct: 380 KAAGIDRVLSVGKQ-----------SHAISTASGVGEHFADKTALITRLKLLIAEQQVIT 428 Query: 408 ILIAGS----LYLAGEALRENG 425 IL+ GS + AL+ENG Sbjct: 429 ILVKGSRSAAMEEVVRALQENG 450 |
Homologous Structures in PDB70 Database Detected by HHsearch
Original result of HHsearch against PDB70 database
Identity | Alignment graph | Length | Definition | Probability |
Target | 429 | FolC bifunctional protein [Candidatus Liberibacter asia | ||
2vos_A | 487 | Folylpolyglutamate synthase protein FOLC; ligase, confo | 100.0 | |
3nrs_A | 437 | Dihydrofolate:folylpolyglutamate synthetase; structural | 100.0 | |
1o5z_A | 442 | Folylpolyglutamate synthase/dihydrofolate synthase; TM0 | 100.0 | |
1jbw_A | 428 | Folylpolyglutamate synthase; FPGS folate AMPPCP ternary | 100.0 | |
1w78_A | 422 | FOLC bifunctional protein; DHFS, dihydrofolate synthase | 100.0 | |
2wtz_A | 535 | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-diamino | 100.0 | |
1e8c_A | 498 | UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopim | 100.0 | |
3hn7_A | 524 | UDP-N-acetylmuramate-L-alanine ligase; YP_263340.1, str | 100.0 | |
1j6u_A | 469 | UDP-N-acetylmuramate-alanine ligase MURC; structural ge | 100.0 | |
2f00_A | 491 | UDP-N-acetylmuramate--L-alanine ligase; amide bond liga | 100.0 | |
1p3d_A | 475 | UDP-N-acetylmuramate--alanine ligase; alpha/beta protei | 100.0 | |
2am1_A | 454 | SP protein, UDP-N-acetylmuramoylalanine-D-glutamyl-lysi | 100.0 | |
1gg4_A | 452 | UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimel | 100.0 | |
3lk7_A | 451 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalac | 100.0 | |
2x5o_A | 439 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-bi | 100.0 | |
3eag_A | 326 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- MESO-di | 99.96 | |
3mvn_A | 163 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl-M diami | 99.48 | |
2www_A | 349 | Methylmalonic aciduria type A protein, mitochondrial; t | 97.33 | |
2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural genomi | 96.26 | |
3p32_A | 355 | Probable GTPase RV1496/MT1543; structural genomics, sea | 94.52 | |
1byi_A | 224 | Dethiobiotin synthase; biotin synthesis, cyclo-ligase, | 96.7 | |
2qmo_A | 220 | Dethiobiotin synthetase; structural genomics, PSI-2, pr | 96.4 | |
2j37_W | 504 | Signal recognition particle 54 kDa protein (SRP54); rib | 96.15 | |
3end_A | 307 | Light-independent protochlorophyllide reductase iron-su | 96.08 | |
3fgn_A | 251 | Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP | 95.82 | |
2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone; HET: M | 95.26 | |
1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis protein | 94.31 | |
1g3q_A | 237 | MIND ATPase, cell division inhibitor; alpha-beta-alpha | 94.3 | |
3bfv_A | 271 | CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine | 94.25 | |
2ph1_A | 262 | Nucleotide-binding protein; alpha-beta protein, structu | 94.18 | |
3cio_A | 299 | ETK, tyrosine-protein kinase ETK; WZC, escherichia coli | 94.12 | |
2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, GTPa | 94.08 | |
1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest cent | 94.03 | |
3la6_A | 286 | Tyrosine-protein kinase WZC; P-loop protein, nucleotide | 93.94 | |
2v3c_C | 432 | SRP54, signal recognition 54 kDa protein; nucleotide-bi | 93.91 | |
3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal recogn | 93.49 | |
3k9g_A | 267 | PF-32 protein; ssgcid, SBRI, decode biostructures, UW, | 93.37 | |
1a7j_A | 290 | Phosphoribulokinase; transferase, calvin cycle; 2.50A { | 93.18 | |
2afh_E | 289 | Nitrogenase iron protein 1; nitrogen fixation, iron-sul | 93.05 | |
1hyq_A | 263 | MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bac | 92.49 | |
1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU ADP; | 92.19 | |
1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural genomi | 91.97 | |
3ez2_A | 398 | Plasmid partition protein A; type IA, DNA binding, wing | 91.93 | |
1ihu_A | 589 | Arsenical pump-driving ATPase; aluminum fluoride, ADP, | 91.83 | |
3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose transport | 91.15 | |
1wcv_1 | 257 | SOJ, segregation protein; ATPase, bacterial, chromosome | 90.69 | |
3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CPFTSY; | 95.92 | |
1vma_A | 306 | Cell division protein FTSY; TM0570, structural genomics | 92.28 | |
3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, SRP-GT | 91.71 | |
1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, recepto | 90.9 | |
2qy9_A | 309 | Cell division protein FTSY; SRP receptor, protein targe | 90.83 | |
1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, SRP, G | 90.49 | |
1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signaling pro | 90.4 | |
2og2_A | 359 | Putative signal recognition particle receptor; nucleoti | 94.37 | |
1ihu_A | 589 | Arsenical pump-driving ATPase; aluminum fluoride, ADP, | 90.83 |
>2vos_A Folylpolyglutamate synthase protein FOLC; ligase, conformational change, peptidoglycan synthesis, cell division, cobalt binding; HET: ADP; 2.0A {Mycobacterium tuberculosis} PDB: 2vor_A* | Back alignment and structure |
---|
Probab=100.00 E-value=0 Score=675.33 Aligned_cols=399 Identities=28% Similarity=0.408 Sum_probs=342.5 Q ss_pred CCHHHHHHHHHHCCCHHHHCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEECCCCCCCEECCHH Q ss_conf 88899999998729958835983999458984799999999999978935141378411012008988847787155889 Q gi|254780821|r 4 DSLLKMGYLLEDLGRPQDRLPPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNERFRLGVKGGRGRLVEDV 83 (429) Q Consensus 4 ~~l~r~~~ll~~lg~P~~~~~~vI~VtGTnGKttt~~~i~~il~~~g~k~g~~tSPhl~~~~Eri~i~~~~~~g~~i~~~ 83 (429) =+|+||++||++|||||+++ |||||||||||||||+|+++||+++|+|||+||||||++++|||+|| |++|++. T Consensus 45 ~gL~ri~~~l~~lg~P~~~~-~vI~VtGTNGKtSt~~~l~~iL~~~G~~vG~~tSPhl~~~~Eri~i~-----g~~I~~~ 118 (487) T 2vos_A 45 PSLTRISALMDLLGSPQRSY-PSIHIAGTNGKTSVARMVDALVTALHRRTGRTTSPHLQSPVERISID-----GKPISPA 118 (487) T ss_dssp TTCHHHHHHHHHTTCGGGSS-CEEEEECSSSHHHHHHHHHHHHHHTTCCEEEECSSCSSCGGGGEEET-----TEECCHH T ss_pred CCHHHHHHHHHHCCCHHHCC-CEEEEECCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCEEEEEEEC-----CEECCHH T ss_conf 98799999999749927619-97999888018999999999999779986896787738424599999-----9983899 Q ss_pred HHHHHHHHHHHC-------------CCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEC Q ss_conf 999999998630-------------4776779578999999987411446247776444756764135677515898602 Q gi|254780821|r 84 ELLDVFRRVRRV-------------KSAQNLTIFELSIATALVLFSKYPADCAIIEVGLGGSLDATNIIEKVAVSVITSI 150 (429) Q Consensus 84 ~~~~~~~~i~~~-------------~~~~~~t~FE~lt~~a~~~f~~~~~d~~vlE~GlGGr~DaTnvi~~~~vavITnI 150 (429) ++.+++.++... .....+||||++|++||.+|.++++|++|+|+|+|||+|+||+++ |+++||||| T Consensus 119 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~t~fe~~t~~a~~~~~~~~~d~~v~E~glgg~~datn~~~-~~vavITnI 197 (487) T 2vos_A 119 QYVATYREIEPLVALIDQQSQASAGKGGPAMSKFEVLTAMAFAAFADAPVDVAVVEVGMGGRWDATNVIN-APVAVITPI 197 (487) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC-----CCCCHHHHHHHHHHHHHHHTTCSEEEEECSSSSTTSTTCSSC-CSEEEECCC T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCC-CCEEEECCC T ss_conf 9999999998998764455432114699988778999999999987503168888420465304210345-564787167 Q ss_pred CCHHCCCCCCCHHHHHHHHHHHCCC------CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC-----CCE Q ss_conf 5000000278523445666531137------98331544471789889999862105665235763210125-----852 Q gi|254780821|r 151 SLDHEKILGNTVSAIAKDKSGIIKP------GCPVVIGHQVYDEVREILVSKAEKMGCPYNVYGDDFYAFEK-----NKC 219 (429) Q Consensus 151 ~~DHle~LG~tle~Ia~eKa~I~k~------~~~~v~~~~~~~~~~~~i~~~a~~~~~~~~~~~~~~~~~~~-----~~~ 219 (429) ++||+|+||+|+++||++|++||+. +.++|++.+ ++++.+++..++.+.++..+..+.++..... +.. T Consensus 198 ~~DH~d~lG~t~e~ia~eKagIi~~~~~~~p~~~~v~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (487) T 2vos_A 198 SIDHVDYLGADIAGIAGEKAGIITRAPDGSPDTVAVIGRQ-VPKVMEVLLAESVRADASVAREDSEFAVLRRQIAVGGQV 276 (487) T ss_dssp CCCBCSCSSCCHHHHHHHHHTTCCCCC--CCCCEEEECCC-CHHHHHHHHHHHHHTTCEEEEBTTTBEEEEEEEETTEEE T ss_pred CCCHHHHHCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCC-CHHHHHHHHHHHHHCCCEEEECCCCCCEEEEECCCCCCE T ss_conf 7652223366899999998767763335799725994354-278999999999745962662155410012100257723 Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH-----HHCCHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCE Q ss_conf 444310333344444432222111114699998753-----200001100112222336653035422875444578745 Q gi|254780821|r 220 LVYQDKISQTNLTVLGLVGEHQYINAATAICAVQMA-----GFTLEKECINAALQSVQWFGRLQKITEGPLLNKLPDHSE 294 (429) Q Consensus 220 ~~~~~~~~~~~~~~l~l~G~hn~~Na~~Aiaa~~~l-----g~~i~~~~I~~gL~~~~~pGR~e~i~~~~~~~~~~~~~~ 294 (429) +.+...........++|+|.||++|+++|++++..+ ...++.+.|++||++++||||||.+..++ . T Consensus 277 ~~~~~~~~~~~~~~l~L~G~h~~~Na~~Aia~~~~l~~~~~~~~i~~~~i~~gL~~~~~pGR~e~i~~~~---------~ 347 (487) T 2vos_A 277 LQLQGLGGVYSDIYLPLHGEHQAHNAVLALASVEAFFGAGAQRQLDGDAVRAGFAAVTSPGRLERMRSAP---------T 347 (487) T ss_dssp EEEEETTEEEEEEEECCCSHHHHHHHHHHHHHHHHHTTC----CCCHHHHHHHHHTCCCTTSSEEEETTT---------E T ss_pred EEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCEECCCCC---------E T ss_conf 7883488740244468752668988999999999997523433356899999876414788643025797---------6 Q ss_pred EEEECCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHH Q ss_conf 99933632157998886543311477771243113467989899999888638889998422889984212789899999 Q gi|254780821|r 295 VWIDGGHNPNAGLVVSKEISKLKGSSNKPFYLVIGMVEGKKYGRYLEAFVELSPIVLSVSLICRGRERQSISITPKVLMQ 374 (429) Q Consensus 295 viiD~AHNp~s~~~l~~~l~~l~~~~~~~i~~I~G~~~dKd~~~~l~~l~~~~d~i~~~~~~~~~~~~~~~~~~~~~l~~ 374 (429) |++||||||+|+++++++++.. ++.+++++|||+++|||..+|++.+.+.+|.++++.. ..+++.+++++++ T Consensus 348 viiD~AHNp~a~~~ll~~l~~~--~~~~~ii~V~G~~~dKD~~~~l~~l~~~~d~viit~~------~~pR~~~~~~l~~ 419 (487) T 2vos_A 348 VFIDAAHNPAGASALAQTLAHE--FDFRFLVGVLSVLGDKDVDGILAALEPVFDSVVVTHN------GSPRALDVEALAL 419 (487) T ss_dssp EEECCCCSHHHHHHHHHHHHHS--CCCSEEEEEECCBTTBCHHHHHHHHTTTCSEEEECCC------SCTTBCCHHHHHH T ss_pred EEEECCCCHHHHHHHHHHHHHH--CCCCCEEEEEECCCCCCHHHHHHHHHHHCCEEEEECC------CCCCCCCHHHHHH T ss_conf 9994587989999999989986--5899789999606995999999998854899999689------9967799999999 Q ss_pred HHHHC--CCCEEEECCHHHHHHHHHHHCC-----------CCCCCEEEEECCHHHHHHHHHHCCCC Q ss_conf 99854--9978996998999999998603-----------58867999949779999999987974 Q gi|254780821|r 375 EAKKL--GFQAMACSSMIEALSRVRKINE-----------ELPPPLILIAGSLYLAGEALRENGVR 427 (429) Q Consensus 375 ~~~~~--~~~~~~~~~~~eAi~~a~~~~~-----------~~~~d~VLV~GS~ylvge~l~~~g~~ 427 (429) .+... ..++..++++++|++.|.++++ ..++|.|||||||||||++++++|+. T Consensus 420 ~~~~~~~~~~v~~~~~~~eAi~~A~~~a~~~~~~~~~~~~~~~~d~IlV~GSlylvgev~~~l~~~ 485 (487) T 2vos_A 420 AAGERFGPDRVRTAENLRDAIDVATSLVDDAAADPDVAGDAFSRTGIVITGSVVTAGAARTLFGRD 485 (487) T ss_dssp HHHHHHCGGGEEECSSHHHHHHHHHHHHHHHHTCTTTTC----CEEEEEESSHHHHHHHHHHTTCC T ss_pred HHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHCCC T ss_conf 998637876479918999999999997655332234554147998599975199999999985659 |
>3nrs_A Dihydrofolate:folylpolyglutamate synthetase; structural genomics, center for structural genomics of infec diseases, csgid; HET: TLA MES; 1.80A {Yersinia pestis} PDB: 3n2a_A* | Back alignment and structure |
---|
Probab=100.00 E-value=0 Score=616.07 Aligned_cols=390 Identities=26% Similarity=0.364 Sum_probs=329.4 Q ss_pred CHHHHHHHHHHCCCHHHHCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEECCCCCCCEECCHHH Q ss_conf 88999999987299588359839994589847999999999999789351413784110120089888477871558899 Q gi|254780821|r 5 SLLKMGYLLEDLGRPQDRLPPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNERFRLGVKGGRGRLVEDVE 84 (429) Q Consensus 5 ~l~r~~~ll~~lg~P~~~~~~vI~VtGTnGKttt~~~i~~il~~~g~k~g~~tSPhl~~~~Eri~i~~~~~~g~~i~~~~ 84 (429) +|+||++||++|||||+++ |||||||||||||||+|+++||+++|+|||+||||||.+++|||++| +++|++.+ T Consensus 34 ~l~r~~~ll~~lg~P~~~~-~vI~VtGTNGKtSt~~~i~~iL~~~g~kvG~~tSPhl~~~~Eri~~~-----~~~i~~~~ 107 (437) T 3nrs_A 34 GLERVKQVAERLDLLKPAP-KIFTVAGTNGKGTTCCTLEAILLAAGLRVGVYSSPHLLRYTERVRIQ-----GQELSEAE 107 (437) T ss_dssp CCHHHHHHHHHTTCSCSSS-EEEEEECSSSHHHHHHHHHHHHHHTTCCEEEECCCCSSCGGGGEEET-----TEECCHHH T ss_pred CHHHHHHHHHHCCCCCCCC-CEEEEECCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEEEEC-----CEECCHHH T ss_conf 8599999999729930039-88999778308999999999999879987997888415012369989-----96426899 Q ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHCCCCCCCHHH Q ss_conf 99999998630477677957899999998741144624777644475676413567751589860250000002785234 Q gi|254780821|r 85 LLDVFRRVRRVKSAQNLTIFELSIATALVLFSKYPADCAIIEVGLGGSLDATNIIEKVAVSVITSISLDHEKILGNTVSA 164 (429) Q Consensus 85 ~~~~~~~i~~~~~~~~~t~FE~lt~~a~~~f~~~~~d~~vlE~GlGGr~DaTnvi~~~~vavITnI~~DHle~LG~tle~ 164 (429) +.+++.++........+++||++|++|+.+|.+++||++|+|+|+||++|+||++ .|+++|||||++||+|+||+|+++ T Consensus 108 ~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~~~~d~~i~E~g~gg~~d~t~~~-~~~~~viTnI~~DH~d~lg~t~~~ 186 (437) T 3nrs_A 108 HSHSFAQIEAGRGDISLTYFEFGTLSALQLFKQAKLDVVILEVGLGGRLDATNIV-DSDVAAITSIALDHTDWLGYDRES 186 (437) T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHTCCSEEEEECSSSSTTSGGGGS-CCSEEEECCCCCCBCCCTTCSHHH T ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHCCCCCC-CCCEEEECCCCHHHHHHCCCHHHH T ss_conf 8788764332047888774788999999999756985899704713441775256-544156614242067651414899 Q ss_pred HHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEE-----EEE-----ECCCCCCCCCC Q ss_conf 45666531137983315444717898899998621056652357632101258524-----443-----10333344444 Q gi|254780821|r 165 IAKDKSGIIKPGCPVVIGHQVYDEVREILVSKAEKMGCPYNVYGDDFYAFEKNKCL-----VYQ-----DKISQTNLTVL 234 (429) Q Consensus 165 Ia~eKa~I~k~~~~~v~~~~~~~~~~~~i~~~a~~~~~~~~~~~~~~~~~~~~~~~-----~~~-----~~~~~~~~~~l 234 (429) ||++|++|++++.+++++.+..+ .++.+.+...++..+..+.++......... ... ...... .... T Consensus 187 Ia~~K~~i~k~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 262 (437) T 3nrs_A 187 IGREKAGVFRGGKPAVVGEPDMP---QSIADVAAELGAQLYRRDVAWKFSQQEPFDQQEPVDQQINGWHWQCGER-QLTG 262 (437) T ss_dssp HHHHHGGGCCTTSEEEECCSSCC---HHHHHHHHHHTCEEEEBTTTEEEEC--------------CCEEEEETTE-EEEE T ss_pred HHHHHHCCCCCCCCCCCCCCCCH---HHHHHHHHHHCCCEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCC-HHCC T ss_conf 99996163136986311333324---6799999871773010474222212230122223222224420135410-0102 Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHH Q ss_conf 43222211111469999875320000110011222233665303542287544457874599933632157998886543 Q gi|254780821|r 235 GLVGEHQYINAATAICAVQMAGFTLEKECINAALQSVQWFGRLQKITEGPLLNKLPDHSEVWIDGGHNPNAGLVVSKEIS 314 (429) Q Consensus 235 ~l~G~hn~~Na~~Aiaa~~~lg~~i~~~~I~~gL~~~~~pGR~e~i~~~~~~~~~~~~~~viiD~AHNp~s~~~l~~~l~ 314 (429) ...|.||+.|+++|++++..+++++++..+..++....||||||++..+| .+|+||||||+|+++++++++ T Consensus 263 ~~~~~~~~~na~~a~a~~~~~~~~i~~~~~~~~~~~~~~pGR~e~i~~~~---------~~ilD~AHNp~a~~~l~~~l~ 333 (437) T 3nrs_A 263 LPVPNVPLANAATALAVLHYSELPLSDEAIRQGLQAASLPGRFQVVSEQP---------LLILDVAHNPHAARYLVNRLA 333 (437) T ss_dssp ECCCSSCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHCCCTTSSEEEETTT---------EEEECCCCSHHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCEEEECCCC---------CEEEECCCCHHHHHHHHHHHH T ss_conf 11557999999987665543033441999987531257688511550467---------456624778899999999999 Q ss_pred HHCC----CCCCCEEEEECCCCCCCHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCHH Q ss_conf 3114----777712431134679898999998886388899984228899842127898999999985499789969989 Q gi|254780821|r 315 KLKG----SSNKPFYLVIGMVEGKKYGRYLEAFVELSPIVLSVSLICRGRERQSISITPKVLMQEAKKLGFQAMACSSMI 390 (429) Q Consensus 315 ~l~~----~~~~~i~~I~G~~~dKd~~~~l~~l~~~~d~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 390 (429) +... ...+++++|||+++|||+.+|++.+.+.++.++++.. ..++..+++++.+. ..+...+.+++ T Consensus 334 ~~~~~~~~~~~~ki~~V~G~~~dKd~~~~l~~l~~~~~~ii~~~~------d~~r~~~~~~l~~~----~~~~~~~~~~~ 403 (437) T 3nrs_A 334 QVINPVNASKQGKVRAVVGMLSDKDIAGTLACLSERVDEWYCAPL------EGPRGASAGQLAEH----LVSARQFSDVE 403 (437) T ss_dssp HTC--------CCEEEEECCBTTBCHHHHHHHHTTTCCEEEECCC------SSTTBCCHHHHHTT----CSSCEECSSHH T ss_pred HHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCEEEEECC------CCCCCCCHHHHHHH----HHHCCCCCCHH T ss_conf 986444301479869996435888999999998855899999799------99777999999998----87576369999 Q ss_pred HHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHCCC Q ss_conf 999999986035886799994977999999998797 Q gi|254780821|r 391 EALSRVRKINEELPPPLILIAGSLYLAGEALRENGV 426 (429) Q Consensus 391 eAi~~a~~~~~~~~~d~VLV~GS~ylvge~l~~~g~ 426 (429) +|++.|.+.+ +++|+||||||||||||+++.++. T Consensus 404 eAi~~a~~~a--~~~d~vLI~GSlylvgevl~~L~~ 437 (437) T 3nrs_A 404 TAWRQAMQDA--DTQDVVIVCGSFHTVAHVMAALHL 437 (437) T ss_dssp HHHHHHHHHC--CTTCEEEEESSHHHHHHHHHHTTC T ss_pred HHHHHHHHHC--CCCCEEEEEEHHHHHHHHHHHCCC T ss_conf 9999999847--998869997169999999987679 |
>1o5z_A Folylpolyglutamate synthase/dihydrofolate synthase; TM0166, structural genomics, JCSG, PSI, protein structure initiative; 2.10A {Thermotoga maritima} SCOP: c.59.1.2 c.72.2.2 | Back alignment and structure |
---|
Probab=100.00 E-value=0 Score=596.29 Aligned_cols=390 Identities=29% Similarity=0.431 Sum_probs=331.1 Q ss_pred CCCHHHHHHHHHHCCCHHHHCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEECCCCCCCEECCH Q ss_conf 78889999999872995883598399945898479999999999997893514137841101200898884778715588 Q gi|254780821|r 3 ADSLLKMGYLLEDLGRPQDRLPPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNERFRLGVKGGRGRLVED 82 (429) Q Consensus 3 ~~~l~r~~~ll~~lg~P~~~~~~vI~VtGTnGKttt~~~i~~il~~~g~k~g~~tSPhl~~~~Eri~i~~~~~~g~~i~~ 82 (429) +-+|+||++||++|||||+++ |+|||||||||||||+|+++||+++|+|||+||||||.+++|||+|| |.++++ T Consensus 32 ~~~l~r~~~~l~~lg~P~~~l-~vI~VtGTNGKtSt~~~l~~iL~~~g~kvG~~tSp~l~~~~Eri~in-----g~~~~~ 105 (442) T 1o5z_A 32 KPGLERISMLLSKLGNPHLEY-KTIHIGGTNGKGSVANMVSNILVSQGYRVGSYYSPHLSTFRERIRLN-----EEYISE 105 (442) T ss_dssp CCCSHHHHHHHHHTTCGGGSS-EEEEEECSSSHHHHHHHHHHHHHHHTCCEEEECCSCSSCGGGGEEET-----TEECCH T ss_pred CCCHHHHHHHHHHCCCHHHHC-CEEEEECCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCEEEEEC-----CEECCH T ss_conf 998399999999729907609-98999787247999999999999879988997887627420189999-----994478 Q ss_pred HHHHHHHHHHHHC------CCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHCC Q ss_conf 9999999998630------4776779578999999987411446247776444756764135677515898602500000 Q gi|254780821|r 83 VELLDVFRRVRRV------KSAQNLTIFELSIATALVLFSKYPADCAIIEVGLGGSLDATNIIEKVAVSVITSISLDHEK 156 (429) Q Consensus 83 ~~~~~~~~~i~~~------~~~~~~t~FE~lt~~a~~~f~~~~~d~~vlE~GlGGr~DaTnvi~~~~vavITnI~~DHle 156 (429) ..+.+....++.. .....+++||++|++++.+|.+++||++|+|+|+||++|+||+++ ++++++|+|++||.+ T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~fe~~~~~~~~~f~~~~~d~~i~e~g~~g~~d~~~~~~-~~~~vit~i~~dh~~ 184 (442) T 1o5z_A 106 EDVVKIYETMEPILNELDKEEIFSPSFFEVVTAMAFLYFAEKNVDIAVLEVGLGGRLDATNVVF-PLCSTIVTVDRDHEK 184 (442) T ss_dssp HHHHHHHHHHHHHHHHHTTSTTTCCCHHHHHHHHHHHHHHHTTCSEEEEECSSSSTTCGGGGCC-CSCEEECCCCC---- T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCEECCEEEEC-CCCCEEEEECHHHHH T ss_conf 8999999987765543301578889899999999999854336868988604454031246503-310114320233788 Q ss_pred CCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCC----CCCEEEEEECCCCCCCC Q ss_conf 02785234456665311379833154447178988999986210566523576321012----58524443103333444 Q gi|254780821|r 157 ILGNTVSAIAKDKSGIIKPGCPVVIGHQVYDEVREILVSKAEKMGCPYNVYGDDFYAFE----KNKCLVYQDKISQTNLT 232 (429) Q Consensus 157 ~LG~tle~Ia~eKa~I~k~~~~~v~~~~~~~~~~~~i~~~a~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 232 (429) +||+++++|+++|+++++++.+++++.+ .+....+..+.+............++.... ................. T Consensus 185 ~Lg~~l~~i~~~k~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (442) T 1o5z_A 185 TLGYTIEQIAWEKSGIIKERVPLVTGER-KREALKVMEDVARKKSSRMYVIDKDFSVKVKSLKLHENRFDYCGENTFEDL 263 (442) T ss_dssp ---CCHHHHHHHHGGGCCTTCCEEECCC-CHHHHHHHHHHHHHHTCCEEEBTTTBEEEEEECCTTCEEEEEESSSEEEEE T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCC-CHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCCCCCEEEECCCCCCCCC T ss_conf 8888899999986311235774100455-558899999999960886378740100111101346733653276630243 Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCEEEEECCCCHHHHHHHHHH Q ss_conf 44432222111114699998753200001100112222336653035422875444578745999336321579988865 Q gi|254780821|r 233 VLGLVGEHQYINAATAICAVQMAGFTLEKECINAALQSVQWFGRLQKITEGPLLNKLPDHSEVWIDGGHNPNAGLVVSKE 312 (429) Q Consensus 233 ~l~l~G~hn~~Na~~Aiaa~~~lg~~i~~~~I~~gL~~~~~pGR~e~i~~~~~~~~~~~~~~viiD~AHNp~s~~~l~~~ 312 (429) .++++|.||++|+++|++++..+|++++.+.+.+++....||||||++.. ++..+|+||||||+|+++++++ T Consensus 264 ~~~l~G~~ni~Na~~Aiaa~~~lg~~i~~~~~~~~l~~~~~pGR~e~i~~--------~~~~viiD~AHNp~ai~~ll~~ 335 (442) T 1o5z_A 264 VLTMNGPHQIENAGVALKTLEATGLPLSEKAIREGLKNAKNLGRFEILEK--------NGKMYILDGAHNPHGAESLVRS 335 (442) T ss_dssp EESSCSTHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCTTSSEEEEE--------TTEEEEECCCCSHHHHHHHHHH T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCC--------CCCEEEEECCCCHHHHHHHHHH T ss_conf 54667467999999999999983983367876556533668997744236--------6756999778798999999999 Q ss_pred HHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCHHHH Q ss_conf 43311477771243113467989899999888638889998422889984212789899999998549978996998999 Q gi|254780821|r 313 ISKLKGSSNKPFYLVIGMVEGKKYGRYLEAFVELSPIVLSVSLICRGRERQSISITPKVLMQEAKKLGFQAMACSSMIEA 392 (429) Q Consensus 313 l~~l~~~~~~~i~~I~G~~~dKd~~~~l~~l~~~~d~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~eA 392 (429) ++... +.+++++|||+++|||..+|++.+.+.+|.++.+.. ..++..+++.+.+.+.....++..++++.+| T Consensus 336 l~~~~--~~~~i~~V~G~~~dKD~~~~l~~l~~~~d~viit~~------~~~R~~~~~~i~~~~~~~~~~~~~~~d~~~a 407 (442) T 1o5z_A 336 LKLYF--NGEPLSLVIGILDDKNREDILRKYTGIFERVIVTRV------PSPRMKDMNSLVDMAKKFFKNVEVIEDPLEA 407 (442) T ss_dssp HHHHC--TTCCEEEEECCCTTSCHHHHHGGGTTTCSEEEECCC------SSTTCCCHHHHHHHHHHHCSCCEECSSHHHH T ss_pred HHHHH--CCCCEEEEEEEECCCCHHHHHHHHHHHCCEEEEECC------CCCCCCCHHHHHHHHHHHCCCHHHHHHHHHH T ss_conf 98874--568748999850798999999998855799999899------9967689999999999857984118559999 Q ss_pred HHHHHHHCCCCCCCEEEEECCHHHHHHHHHHC Q ss_conf 99999860358867999949779999999987 Q gi|254780821|r 393 LSRVRKINEELPPPLILIAGSLYLAGEALREN 424 (429) Q Consensus 393 i~~a~~~~~~~~~d~VLV~GS~ylvge~l~~~ 424 (429) ++ .++|.|||||||||||++++++ T Consensus 408 i~--------~~~d~vlV~GSlylvg~v~~~l 431 (442) T 1o5z_A 408 IE--------STERATVVTGSLFLVGYVREFL 431 (442) T ss_dssp HH--------TCCSEEEEESCHHHHHHHHHHH T ss_pred HH--------CCCCCEEEEEEHHHHHHHHHHH T ss_conf 72--------7999999981199999999999 |
>1jbw_A Folylpolyglutamate synthase; FPGS folate AMPPCP ternary complex, ligase; HET: KCX ACQ TMF; 1.85A {Lactobacillus casei} SCOP: c.59.1.2 c.72.2.2 PDB: 1fgs_A* 1jbv_A* 2gca_A 2gc5_A* 2gc6_A* 2gcb_A | Back alignment and structure |
---|
Probab=100.00 E-value=0 Score=540.69 Aligned_cols=389 Identities=32% Similarity=0.471 Sum_probs=321.7 Q ss_pred CCCHHHHHHHHHHCCCHHHHCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEECCCCCCCEECCH Q ss_conf 78889999999872995883598399945898479999999999997893514137841101200898884778715588 Q gi|254780821|r 3 ADSLLKMGYLLEDLGRPQDRLPPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNERFRLGVKGGRGRLVED 82 (429) Q Consensus 3 ~~~l~r~~~ll~~lg~P~~~~~~vI~VtGTnGKttt~~~i~~il~~~g~k~g~~tSPhl~~~~Eri~i~~~~~~g~~i~~ 82 (429) +.+|+||+++|++|||||+++ ++|||||||||||||+|+++||+++|+|||+||||||.+++|||+++ |.++++ T Consensus 19 ~~~~~r~~~~l~~lg~P~~~~-~~I~VTGTNGKTTTs~~l~~iL~~~G~kvG~~tSp~l~~~~eri~~~-----g~~i~~ 92 (428) T 1jbw_A 19 TGDHRRILTLLHALGNPQQQG-RYIHVTGTNGKGSAANAIAHVLEASGLTVGLYTSPFIMRFNERIMID-----HEPIPD 92 (428) T ss_dssp CSSCHHHHHHHHHTTCGGGSS-CEEEEECSSCHHHHHHHHHHHHHHTTCCEEEECSSCSSCGGGGEEET-----TEECCH T ss_pred CCCHHHHHHHHHHCCCHHHHC-CEEEEECCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCEEEEEEEC-----CEECCH T ss_conf 898799999999749938709-98999898227999999999999889988997888747024489999-----995578 Q ss_pred HHHHHHHHHHHHC-------CCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHC Q ss_conf 9999999998630-------477677957899999998741144624777644475676413567751589860250000 Q gi|254780821|r 83 VELLDVFRRVRRV-------KSAQNLTIFELSIATALVLFSKYPADCAIIEVGLGGSLDATNIIEKVAVSVITSISLDHE 155 (429) Q Consensus 83 ~~~~~~~~~i~~~-------~~~~~~t~FE~lt~~a~~~f~~~~~d~~vlE~GlGGr~DaTnvi~~~~vavITnI~~DHl 155 (429) ..+.+..+.+... ....++|+|+++++.++.+|.++++|++++|+|+||++|+||.+. +.++++||++.||. T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~e~~~~~~~~~~~~~~-~~~~~it~i~~dh~ 171 (428) T 1jbw_A 93 AALVNAVAFVRAALERLQQQQADFNVTEFEFITALAYWYFRQRQVDVAVIEVGIGGDTDSTNVIT-PVVSVLTEVALDHQ 171 (428) T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTCCCCHHHHHHHHHHHHHHHTTCSEEEEECSSSSTTSTTCSCC-CSEEEECCCCSCCH T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHCCCCEEEE-CCEEEEECCCCHHH T ss_conf 99999999989999988752268888689999999999998726747997523021104625741-23223404450089 Q ss_pred CCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCC-----CCCCEEEEEECCCCCC Q ss_conf 00278523445666531137983315444717898899998621056652357632101-----2585244431033334 Q gi|254780821|r 156 KILGNTVSAIAKDKSGIIKPGCPVVIGHQVYDEVREILVSKAEKMGCPYNVYGDDFYAF-----EKNKCLVYQDKISQTN 230 (429) Q Consensus 156 e~LG~tle~Ia~eKa~I~k~~~~~v~~~~~~~~~~~~i~~~a~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 230 (429) ++||+++++++++|.++++++.+++.+.+ .+........++....+.......++... ..+....+........ T Consensus 172 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (428) T 1jbw_A 172 KLLGHTITAIAKHKAGIIKRGIPVVTGNL-VPDAAAVVAAKVATTGSQWLRFDRDFSVPKAKLHGWGQRFTYEDQDGRIS 250 (428) T ss_dssp HHHCSSHHHHHHHHGGGCCTTCCEEECCC-CHHHHHHHHHHHHHHTCCEEEBTTTEEEEEEEECSSSEEEEEEETTEEEE T ss_pred HHHCCCHHHHHHHHHHHHCCCCCEEECCC-CCHHHHHHHHHHHHHCCCEEECCCCCCCCHHHHCCCCCCEEEECCCCHHC T ss_conf 88665399999985413324653010356-71467899999986178412025422220111024576113402210002 Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHC----CHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCEEEEECCCCHHHH Q ss_conf 4444432222111114699998753200----001100112222336653035422875444578745999336321579 Q gi|254780821|r 231 LTVLGLVGEHQYINAATAICAVQMAGFT----LEKECINAALQSVQWFGRLQKITEGPLLNKLPDHSEVWIDGGHNPNAG 306 (429) Q Consensus 231 ~~~l~l~G~hn~~Na~~Aiaa~~~lg~~----i~~~~I~~gL~~~~~pGR~e~i~~~~~~~~~~~~~~viiD~AHNp~s~ 306 (429) ...++++|.||++|+++|++++..++.. .+...+..||+.++||||||.+...| .+++||||||+|+ T Consensus 251 ~~~~~l~G~~~~~N~~~aia~~~~~~~~~~~~~~~~~i~~~l~~~~~~gR~e~i~~~~---------~iivD~AHnp~a~ 321 (428) T 1jbw_A 251 DLEVPLVGDYQQRNMAIAIQTAKVYAKQTEWPLTPQNIRQGLAASHWPARLEKISDTP---------LIVIDGAHNPDGI 321 (428) T ss_dssp EEEESCCSTHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTCCCTTSSEEEETTT---------TEEEECCCSHHHH T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCEEEEECCCC---------EEEEECCCCHHHH T ss_conf 3577875356888899999999998652101014788763430356687567852663---------7999668899999 Q ss_pred HHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCEEEE Q ss_conf 98886543311477771243113467989899999888638889998422889984212789899999998549978996 Q gi|254780821|r 307 LVVSKEISKLKGSSNKPFYLVIGMVEGKKYGRYLEAFVELSPIVLSVSLICRGRERQSISITPKVLMQEAKKLGFQAMAC 386 (429) Q Consensus 307 ~~l~~~l~~l~~~~~~~i~~I~G~~~dKd~~~~l~~l~~~~d~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 386 (429) ++++++++.+. .+++++|||+++|||..+|++.+.+.+|.++.++. +.++ +..+.+. .+. ..+.... T Consensus 322 ~~~l~~l~~~~---~~k~~~V~G~~gdkD~~~~~~~~~~~~d~v~i~~~---~~~~--r~~~~~~-~~~----~~~~~~~ 388 (428) T 1jbw_A 322 NGLITALKQLF---SQPITVIAGILADKDYAAMADRLTAAFSTVYLVPV---PGTP--RALPEAG-YEA----LHEGRLK 388 (428) T ss_dssp HHHHHHHHHHC---SSCCEEEEECSSSTTHHHHHHHHHHHCSEEEECCC---SCC----------------------CBC T ss_pred HHHHHHHHHHC---CCCCEEEEEECCCCCHHHHHHHHHHHCCEEEEECC---CCCC--CCCCHHH-HHH----HHCCCCC T ss_conf 99999999733---99845998531797999999998855799999999---9996--6470999-987----6217645 Q ss_pred CCHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHC Q ss_conf 99899999999860358867999949779999999987 Q gi|254780821|r 387 SSMIEALSRVRKINEELPPPLILIAGSLYLAGEALREN 424 (429) Q Consensus 387 ~~~~eAi~~a~~~~~~~~~d~VLV~GS~ylvge~l~~~ 424 (429) +++++|++.+.+.. ++|.|||+||||||||+++.+ T Consensus 389 ~~~~eAi~~a~~~~---~~d~ilI~GS~yl~g~v~~~l 423 (428) T 1jbw_A 389 DSWQEALAASLNDV---PDQPIVITGSLYLASAVRQTL 423 (428) T ss_dssp SSHHHHHHHHHHHC---TTSCEEEEESHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHC---CCCCEEEECHHHHHHHHHHHH T ss_conf 88999999999748---999699976799999999998 |
>1w78_A FOLC bifunctional protein; DHFS, dihydrofolate synthase, synthase, ATP-binding, folate biosynthesis, ligase, multifunctional enzyme; HET: KCX PD8 ADP; 1.82A {Escherichia coli} PDB: 1w7k_A* | Back alignment and structure |
---|
Probab=100.00 E-value=0 Score=521.52 Aligned_cols=384 Identities=26% Similarity=0.382 Sum_probs=321.3 Q ss_pred CHHHHHHHHHHCCCHHHHCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEECCCCCCCEECCHHH Q ss_conf 88999999987299588359839994589847999999999999789351413784110120089888477871558899 Q gi|254780821|r 5 SLLKMGYLLEDLGRPQDRLPPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNERFRLGVKGGRGRLVEDVE 84 (429) Q Consensus 5 ~l~r~~~ll~~lg~P~~~~~~vI~VtGTnGKttt~~~i~~il~~~g~k~g~~tSPhl~~~~Eri~i~~~~~~g~~i~~~~ 84 (429) +|+||++++++|||||.++ |||+||||||||||++|+++||+++|++||+||||||.+++|||+++ +.++++.. T Consensus 31 ~l~r~~~~~~~l~~p~~~~-~vI~VTGTNGKTTT~~li~~iL~~~G~~vg~~~sp~l~~~~eri~~~-----~~~i~~~~ 104 (422) T 1w78_A 31 GLERVSLVAARLGVLKPAP-FVFTVAGTNGKGTTCRTLESILMAAGYKVGVYSSPHLVRYTERVRVQ-----GQELPESA 104 (422) T ss_dssp CSHHHHHHHHHHTCSSCSS-EEEEEECSSCHHHHHHHHHHHHHHTTCCEEEECCSCSSCGGGGEEET-----TEECCHHH T ss_pred CHHHHHHHHHHCCCCCCCC-CEEEEECCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEEEEC-----CEECCHHH T ss_conf 8699999999749962159-88999888218999999999999889988997987726044238999-----87435687 Q ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHCCCCCCCHHH Q ss_conf 99999998630477677957899999998741144624777644475676413567751589860250000002785234 Q gi|254780821|r 85 LLDVFRRVRRVKSAQNLTIFELSIATALVLFSKYPADCAIIEVGLGGSLDATNIIEKVAVSVITSISLDHEKILGNTVSA 164 (429) Q Consensus 85 ~~~~~~~i~~~~~~~~~t~FE~lt~~a~~~f~~~~~d~~vlE~GlGGr~DaTnvi~~~~vavITnI~~DHle~LG~tle~ 164 (429) +...............+++||+++.+|+.+|.+.++|++++|+|+||++|.+|.+.. +++++|||+.||+++||++++. T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~f~~~~~d~~~~e~~~~~~~d~~~~~~~-~~~~~t~i~~dH~d~l~~~~~~ 183 (422) T 1w78_A 105 HTASFAEIESARGDISLTYFEYGTLSALWLFKQAQLDVVILEVGLGGRLDATNIVDA-DVAVVTSIALDHTDWLGPDRES 183 (422) T ss_dssp HHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHTCSEEEEECSSSSTTSGGGGSCC-SEEEECCCCSCCHHHHCSSHHH T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHCCCCCCCC-CCEECCCCCHHHHHHHCCHHHH T ss_conf 665778888873378875678999999999876599879984463776364222111-3200045521166642537677 Q ss_pred HHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCC Q ss_conf 45666531137983315444717898899998621056652357632101258524443103333444444322221111 Q gi|254780821|r 165 IAKDKSGIIKPGCPVVIGHQVYDEVREILVSKAEKMGCPYNVYGDDFYAFEKNKCLVYQDKISQTNLTVLGLVGEHQYIN 244 (429) Q Consensus 165 Ia~eKa~I~k~~~~~v~~~~~~~~~~~~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~N 244 (429) |+.+|+++++++.+.+.+.+... .+....+.+.++........+..........+.+.........++++|.||+.| T Consensus 184 i~~~k~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~n 260 (422) T 1w78_A 184 IGREKAGIFRSEKPAIVGEPEMP---STIADVAQEKGALLQRRGVEWNYSVTDHDWAFSDAHGTLENLPLPLVPQPNAAT 260 (422) T ss_dssp HHHHHGGGCCTTSEEEECCSSCC---HHHHHHHHHHTCEEEEBTTTBEEEECSSCEEEEETTEEEEEECCCSSCHHHHHH T ss_pred HHHHHHHHHCCCCCCCHHCCCHH---HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH T ss_conf 89998754316885300100036---677888887645777765541021002443234654542222224567778999 Q ss_pred HHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCCE Q ss_conf 14699998753200001100112222336653035422875444578745999336321579988865433114777712 Q gi|254780821|r 245 AATAICAVQMAGFTLEKECINAALQSVQWFGRLQKITEGPLLNKLPDHSEVWIDGGHNPNAGLVVSKEISKLKGSSNKPF 324 (429) Q Consensus 245 a~~Aiaa~~~lg~~i~~~~I~~gL~~~~~pGR~e~i~~~~~~~~~~~~~~viiD~AHNp~s~~~l~~~l~~l~~~~~~~i 324 (429) |++|++ .++..++.+.|+.++....||||||.+..+ .++|+||||||+|+++++++++.+. ..+++ T Consensus 261 Alaa~~---~~~~~~~~~~I~~~~~~~~~~gR~e~l~~~---------~~viiD~AHNp~a~~a~l~~l~~~~--~~~~i 326 (422) T 1w78_A 261 ALAALR---ASGLEVSENAIRDGIASAILPGRFQIVSES---------PRVIFDVAHNPHAAEYLTGRMKALP--KNGRV 326 (422) T ss_dssp HHHHHH---HHTCCCCHHHHHHHHHHCCCTTSSEEEETT---------TEEEEECCCSHHHHHHHHHHHHHSC--SCSCE T ss_pred HHHHHH---HHCCCCCHHHHHHHHCCCCCCCCEEEECCC---------CEEEEECCCCHHHHHHHHHHHHHHC--CCCCE T ss_conf 999999---827886789998741234556731696148---------7499976889899999998535542--58753 Q ss_pred EEEECCCCCCCHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHCCCCC Q ss_conf 43113467989899999888638889998422889984212789899999998549978996998999999998603588 Q gi|254780821|r 325 YLVIGMVEGKKYGRYLEAFVELSPIVLSVSLICRGRERQSISITPKVLMQEAKKLGFQAMACSSMIEALSRVRKINEELP 404 (429) Q Consensus 325 ~~I~G~~~dKd~~~~l~~l~~~~d~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~eAi~~a~~~~~~~~ 404 (429) ++|+|+.+|||..++++.+.+..+.++.+.. + .+++.+++++.+... +...++++++|++.|.+.+ ++ T Consensus 327 i~i~G~~~dkd~~~~~~~~~~~~~~iii~~~---~---~~r~~~~~~i~~~~~----~~~~~~~~~eAi~~a~~~a--~~ 394 (422) T 1w78_A 327 LAVIGMLHDKDIAGTLAWLKSVVDDWYCAPL---E---GPRGATAEQLLEHLG----NGKSFDSVAQAWDAAMADA--KA 394 (422) T ss_dssp EEEECCBTTSCHHHHHHHHHTTCSEEEECCC---C---SSSBCCHHHHHHHHS----SCEECSSHHHHHHHHHHHC--CT T ss_pred EEECCCCCCCCHHHHHHHHHHHCCEEEEECC---C---CCCCCCHHHHHHHHC----CCCCCCCHHHHHHHHHHHC--CC T ss_conf 7821555786899999998865699999899---9---977799999999852----1874699999999999857--99 Q ss_pred CCEEEEECCHHHHHHHHHHC Q ss_conf 67999949779999999987 Q gi|254780821|r 405 PPLILIAGSLYLAGEALREN 424 (429) Q Consensus 405 ~d~VLV~GS~ylvge~l~~~ 424 (429) +|+|||+|||||+||+|+.+ T Consensus 395 ~d~VLI~GS~yl~g~vl~~l 414 (422) T 1w78_A 395 EDTVLVCGSFHTVAHVMEVI 414 (422) T ss_dssp TCEEEEESSHHHHHHHHHHH T ss_pred CCEEEEECHHHHHHHHHHHH T ss_conf 88799954699999999999 |
>2wtz_A UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-diaminopimelate ligase; nucleotide-binding, peptidoglycan synthesis, MURE, cytoplasm; HET: KCX UAG; 3.00A {Mycobacterium tuberculosis} | Back alignment and structure |
---|
Probab=100.00 E-value=0 Score=346.79 Aligned_cols=360 Identities=19% Similarity=0.207 Sum_probs=248.0 Q ss_pred CCCCHHHHHHHHHH-CCCHHHHCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEECCCCCCCEEC Q ss_conf 77888999999987-29958835983999458984799999999999978935141378411012008988847787155 Q gi|254780821|r 2 AADSLLKMGYLLED-LGRPQDRLPPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNERFRLGVKGGRGRLV 80 (429) Q Consensus 2 ~~~~l~r~~~ll~~-lg~P~~~~~~vI~VtGTnGKttt~~~i~~il~~~g~k~g~~tSPhl~~~~Eri~i~~~~~~g~~i 80 (429) ..|++.-+..|..+ .|+|+.++ +|||||||||||||+.|++++|+++|+++++++||++..+.+++... .... T Consensus 124 v~d~~~aL~~la~~~~~~p~~~l-~vI~VTGTnGKTTT~~~l~~iL~~~G~~~~~~~s~~~~~~~~~~~~~-----~t~~ 197 (535) T 2wtz_A 124 HPAPRGVLGGLAATVYGHPSERL-TVIGITGTSGKTTTTYLVEAGLRAAGRVAGLIGTIGIRVGGADLPSA-----LTTP 197 (535) T ss_dssp CSSSHHHHHHHHHHHTTCGGGSS-EEEEEESSSCHHHHHHHHHHHHHHTTCCEEEESSSCEEETTEEECCS-----SSSC T ss_pred ECCHHHHHHHHHHHHHCCHHHCC-EEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCCC-----CCCC T ss_conf 89899999999999864810078-19999699988999999999998539740124773123037511556-----7885 Q ss_pred CHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHH----HHHHHHCCCCCCCEEEEEECCCHHCC Q ss_conf 88999999999863047767795789999999874114462477764447----56764135677515898602500000 Q gi|254780821|r 81 EDVELLDVFRRVRRVKSAQNLTIFELSIATALVLFSKYPADCAIIEVGLG----GSLDATNIIEKVAVSVITSISLDHEK 156 (429) Q Consensus 81 ~~~~~~~~~~~i~~~~~~~~~t~FE~lt~~a~~~f~~~~~d~~vlE~GlG----Gr~DaTnvi~~~~vavITnI~~DHle 156 (429) ....+. ..+..+.+.++...++|+..- +|.| ...|+++++|||+.||++ T Consensus 198 ~~~~l~-----------------------~~~~~~~e~g~~~~~~e~~~~~~~~~r~~----~~~~~v~vitni~~~Hl~ 250 (535) T 2wtz_A 198 EAPTLQ-----------------------AMLAAMVERGVDTVVMEVSSHALALGRVD----GTRFAVGAFTNLSRDHLD 250 (535) T ss_dssp CHHHHH-----------------------HHHHHHHHTTCCEEEEECCHHHHHTTTTT----TCCEEEEEECCCCSCCTT T ss_pred CHHHHH-----------------------HHHHHHHHCCCCEEEEEECHHHHHHCCCC----CCCCEEEEEECCCHHHHH T ss_conf 415667-----------------------66666650698658997121167752433----356408999656278865 Q ss_pred CCCCCHHHHHHHHHHHCCCC-----CCCCCCCCCCHHHHHHHHHHHHHCCCCCC-CCCCCCCC-----CCC-CCEEEEEE Q ss_conf 02785234456665311379-----83315444717898899998621056652-35763210-----125-85244431 Q gi|254780821|r 157 ILGNTVSAIAKDKSGIIKPG-----CPVVIGHQVYDEVREILVSKAEKMGCPYN-VYGDDFYA-----FEK-NKCLVYQD 224 (429) Q Consensus 157 ~LG~tle~Ia~eKa~I~k~~-----~~~v~~~~~~~~~~~~i~~~a~~~~~~~~-~~~~~~~~-----~~~-~~~~~~~~ 224 (429) ++| +++.++.+|+.++.+. ...+++.+ ++....+. ........... ....++.. ... ...+.... T Consensus 251 ~~~-~~e~~~~~K~~lf~~~~~~~~~~~v~n~~-d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (535) T 2wtz_A 251 FHP-SMADYFEAKASLFDPDSALRARTAVVCID-DDAGRAMA-ARAADAITVSAADRPAHWRATDVAPTDAGGQQFTAID 327 (535) T ss_dssp TSS-SHHHHHHHHHTTTCTTSTTCCSEEEEECS-SHHHHHHH-HHHSSCEEEESSSSCCSEEEEEEEEETTTEEEEEEEC T ss_pred HCC-CHHHHHHHHHHHHHCCCCCCCCEEEEECC-HHHHHHHH-HHCCCCCEEECCCCCCHHHHHHHCCCCCCCCEEECCC T ss_conf 237-56765444332110024445753899255-08899997-6303441122146630023332022235761122035 Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCEEEEECCCCHH Q ss_conf 03333444444322221111146999987532000011001122223366530354228754445787459993363215 Q gi|254780821|r 225 KISQTNLTVLGLVGEHQYINAATAICAVQMAGFTLEKECINAALQSVQWFGRLQKITEGPLLNKLPDHSEVWIDGGHNPN 304 (429) Q Consensus 225 ~~~~~~~~~l~l~G~hn~~Na~~Aiaa~~~lg~~i~~~~I~~gL~~~~~pGR~e~i~~~~~~~~~~~~~~viiD~AHNp~ 304 (429) ..+......++|+|.||++|+++|++++..+|+ +.+.|.++|.+++||||||.+..+ .+..+++||+|||+ T Consensus 328 ~~g~~~~i~l~l~G~hnv~NalaAia~a~~lgi--~~~~i~~~L~~~~~~gR~e~i~~~-------~~~~i~~dya~np~ 398 (535) T 2wtz_A 328 PAGVGHHIGIRLPGRYNVANCLVALAILDTVGV--SPEQAVPGLREIRVPGRLEQIDRG-------QGFLALVDYAHKPE 398 (535) T ss_dssp TTSCEEEEEESCCSHHHHHHHHHHHHHHHHTTC--CHHHHHHHHTTCCCTTSSEECCSS-------CSSEEEEECCCSHH T ss_pred CCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHCCCCCCEEEEEEC-------CCCEEEEECCCCHH T ss_conf 543102443225672157779999999987499--999999999869986738999851-------89689996799969 Q ss_pred HHHHHHHHHHHHCCCCCCCEEEEECCCCCCCH---HHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHC-- Q ss_conf 79988865433114777712431134679898---9999988863888999842288998421278989999999854-- Q gi|254780821|r 305 AGLVVSKEISKLKGSSNKPFYLVIGMVEGKKY---GRYLEAFVELSPIVLSVSLICRGRERQSISITPKVLMQEAKKL-- 379 (429) Q Consensus 305 s~~~l~~~l~~l~~~~~~~i~~I~G~~~dKd~---~~~l~~l~~~~d~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 379 (429) ++.+.+..+.. ..+++++|||+++|||. ..|.+...+.+|.++++...++...+.. ..+++.+.+.+. T Consensus 399 ~~~~~l~~~~~----~~~r~~~Vlg~~gd~~~~~~~~~~~~a~~~ad~vi~t~~~pr~e~~~~---i~~~i~~~~~~~~~ 471 (535) T 2wtz_A 399 ALRSVLTTLAH----PDRRLAVVFGAGGDRDPGKRAPMGRIAAQLADLVVVTDDNPRDEDPTA---IRREILAGAAEVGG 471 (535) T ss_dssp HHHHHHHTTCC----SSSCEEEEECCCTTSCGGGHHHHHHHHHHHCSEEEECCSCCTTSCHHH---HHHHHHHHHTTCC- T ss_pred HHHHHHHHHHH----HCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCHHH---HHHHHHHHHHHHCC T ss_conf 99999999764----159967997877887577899999999962999999987767579899---99999987897479 Q ss_pred CCCEEEECCHHHHHHHHHHHCCCCCCCEEEEECCHH Q ss_conf 997899699899999999860358867999949779 Q gi|254780821|r 380 GFQAMACSSMIEALSRVRKINEELPPPLILIAGSLY 415 (429) Q Consensus 380 ~~~~~~~~~~~eAi~~a~~~~~~~~~d~VLV~GS~y 415 (429) ..++..++++++|++.+.+.+ +++|+|||+|+.+ T Consensus 472 ~~~v~~~~d~~eAi~~a~~~a--~~gDvVLv~G~Gh 505 (535) T 2wtz_A 472 DAQVVEIADRRDAIRHAVAWA--RPGDVVLIAGKGH 505 (535) T ss_dssp CCEEEECCSHHHHHHHHHHHC--CTTCEEEEESCTT T ss_pred CCCEEEECCHHHHHHHHHHHC--CCCCEEEECCCCC T ss_conf 988899599999999999838--9999999837888 |
>1e8c_A UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase; peptidoglycan biosynthesis; HET: KCX UAG API; 2.00A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1 | Back alignment and structure |
---|
Probab=100.00 E-value=0 Score=331.30 Aligned_cols=356 Identities=17% Similarity=0.126 Sum_probs=242.6 Q ss_pred CCCHHHHHHHHHH-CCCHHHHCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEECCCCCCCEECC Q ss_conf 7888999999987-299588359839994589847999999999999789351413784110120089888477871558 Q gi|254780821|r 3 ADSLLKMGYLLED-LGRPQDRLPPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNERFRLGVKGGRGRLVE 81 (429) Q Consensus 3 ~~~l~r~~~ll~~-lg~P~~~~~~vI~VtGTnGKttt~~~i~~il~~~g~k~g~~tSPhl~~~~Eri~i~~~~~~g~~i~ 81 (429) +|+++.|..|..+ +++|+.++ ++|+||||||||||+.|++++|++.|++++.++|+......+.+..+ T Consensus 87 ~d~~~aL~~la~~~~~~~~~~~-~vIgITGSnGKTTT~~~l~~iL~~~~~~~~~~g~~~~~~~~~~~~~~---------- 155 (498) T 1e8c_A 87 SQLNERLSALAGRFYHEPSDNL-RLVGVTGTNGKTTTTQLLAQWSQLLGEISAVMGTVGNGLLGKVIPTE---------- 155 (498) T ss_dssp TTHHHHHHHHHHHHTTCGGGSS-EEEEEESSSCHHHHHHHHHHHHHHTTCCEEEEETTEEEETTCCBCCS---------- T ss_pred CCHHHHHHHHHHHHHCCCCCCC-CEEEEECCCCCCCEEECCHHHHHHCCCCCEECCCEECCCCCCCCCCC---------- T ss_conf 9999999999999855733367-18999789998000646000455437530002540013475224557---------- Q ss_pred HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHCCCCCCC Q ss_conf 89999999998630477677957899999998741144624777644475676413567751589860250000002785 Q gi|254780821|r 82 DVELLDVFRRVRRVKSAQNLTIFELSIATALVLFSKYPADCAIIEVGLGGSLDATNIIEKVAVSVITSISLDHEKILGNT 161 (429) Q Consensus 82 ~~~~~~~~~~i~~~~~~~~~t~FE~lt~~a~~~f~~~~~d~~vlE~GlGGr~DaTnvi~~~~vavITnI~~DHle~LG~t 161 (429) ......+..++ .|..+.+++++++++|+...|..+..--+-+|+++|||||+.||++++| + T Consensus 156 ----------------~~~~~~~~~~~--~l~~~~~~~~~~~~~e~s~~g~~~~~~~~~~p~iaviTNI~~dHl~~~g-s 216 (498) T 1e8c_A 156 ----------------NTTGSAVDVQH--ELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHG-D 216 (498) T ss_dssp ----------------SSSCCHHHHHH--HHHHHHHTTCCEEEEECCHHHHHTTTTTTCBCSEEEECCCCSCCHHHHS-S T ss_pred ----------------CCCCCHHHHHH--HHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCEEEEECCCHHHCCCCC-C T ss_conf ----------------87873567899--9999885699299990698364556407688888999489778767568-8 Q ss_pred HHHHHHHHHHHCC--CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCC-------CCCCCC-----CCCCCEEEEEECCC Q ss_conf 2344566653113--798331544471789889999862105665235-------763210-----12585244431033 Q gi|254780821|r 162 VSAIAKDKSGIIK--PGCPVVIGHQVYDEVREILVSKAEKMGCPYNVY-------GDDFYA-----FEKNKCLVYQDKIS 227 (429) Q Consensus 162 le~Ia~eKa~I~k--~~~~~v~~~~~~~~~~~~i~~~a~~~~~~~~~~-------~~~~~~-----~~~~~~~~~~~~~~ 227 (429) ++.++.+|..++. +...+|++.+ ++....+. ++..+........ +.++.. ......+.+.. .. T Consensus 217 ~e~~~~aK~~i~~~~~~g~~vln~D-d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 293 (498) T 1e8c_A 217 MEHYEAAKWLLYSEHHCGQAIINAD-DEVGRRWL-AKLPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFSS-SW 293 (498) T ss_dssp HHHHHHHHHHHHHTSBCCEEEEETT-SHHHHHHH-TTCTTCEEEESSSCCCTTTCSEEEEEEEEEECSSCEEEEEEE-TT T ss_pred HHHHHHHHHHHHHHCCCCEEEEECC-CHHHHHHH-HHCCCCEEEEECCCCCCCCCCCCEEEEEEEECCCCCEEEECC-CC T ss_conf 3676778888653036772899358-67887777-650462588631456754334200002465226652011004-67 Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHCCCCCCCCC-CCCCEEEEECCCCCCCCCCCCEEEEECCCCHHHH Q ss_conf 334444443222211111469999875320000110011222233-6653035422875444578745999336321579 Q gi|254780821|r 228 QTNLTVLGLVGEHQYINAATAICAVQMAGFTLEKECINAALQSVQ-WFGRLQKITEGPLLNKLPDHSEVWIDGGHNPNAG 306 (429) Q Consensus 228 ~~~~~~l~l~G~hn~~Na~~Aiaa~~~lg~~i~~~~I~~gL~~~~-~pGR~e~i~~~~~~~~~~~~~~viiD~AHNp~s~ 306 (429) ....+.++++|.||++|+++|++++..+|.++ +.|.++++++. .+||||.+.. .++..+++||+|||+|+ T Consensus 294 ~~~~i~l~l~G~hnv~NalaAia~a~~lg~~~--~~i~~~l~~~~~~~gR~e~~~~-------~~~~~iidDy~~np~s~ 364 (498) T 1e8c_A 294 GDGEIESHLMGAFNVSNLLLALATLLALGYPL--ADLLKTAARLQPVCGRMEVFTA-------PGKPTVVVDYAHTPDAL 364 (498) T ss_dssp CCEEEEECSCSHHHHHHHHHHHHHHHHTTCCH--HHHHHHGGGCCCCTTSSEEECC-------TTSCEEEEECCCSHHHH T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHCCCH--HHHHHHHHHCCCCCCCEEEEEE-------CCCEEEEEECCCCHHHH T ss_conf 64368875127379999999999997622125--8999999745898997289993-------89549999427992999 Q ss_pred HHHHHHHHHHCCCCCCCEEEEECCCCCCC--HH-HHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCC--- Q ss_conf 98886543311477771243113467989--89-9999888638889998422889984212789899999998549--- Q gi|254780821|r 307 LVVSKEISKLKGSSNKPFYLVIGMVEGKK--YG-RYLEAFVELSPIVLSVSLICRGRERQSISITPKVLMQEAKKLG--- 380 (429) Q Consensus 307 ~~l~~~l~~l~~~~~~~i~~I~G~~~dKd--~~-~~l~~l~~~~d~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--- 380 (429) +++++.+.... .+|+++|+|++++++ .. .+.+.....+|.++.+...++ ...+..+.+.+.+.. T Consensus 365 ~a~l~~l~~~~---~~rii~v~g~~g~~~~~~~~~~~~~a~~~~d~vilt~~~~~-------~e~~~~i~~~~~~~~~~~ 434 (498) T 1e8c_A 365 EKALQAARLHC---AGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPR-------TEEPRAIINDILAGMLDA 434 (498) T ss_dssp HHHHHHHHHTC---SSCEEEEECCCSSSCSTHHHHHHHHHHHHCSEEEECCSCCB-------TSCHHHHHHHHHTTSSCG T ss_pred HHHHHHHHHHC---CCCEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEECCCCCC-------CCCHHHHHHHHHHCCCCC T ss_conf 99999988656---99889998876666521558999999855999999987878-------779899999998567677 Q ss_pred CCEEEECCHHHHHHHHHHHCCCCCCCEEEEEC Q ss_conf 97899699899999999860358867999949 Q gi|254780821|r 381 FQAMACSSMIEALSRVRKINEELPPPLILIAG 412 (429) Q Consensus 381 ~~~~~~~~~~eAi~~a~~~~~~~~~d~VLV~G 412 (429) .++..++++++|++.+.+.+ +++|+|||+| T Consensus 435 ~~~~~~~d~~eAi~~a~~~a--~~gDvVLi~G 464 (498) T 1e8c_A 435 GHAKVMEGRAEAVTCAVMQA--KENDVVLVAG 464 (498) T ss_dssp GGSEECSCHHHHHHHHHHHS--CTTCEEEEES T ss_pred CCEEEECCHHHHHHHHHHHC--CCCCEEEEEC T ss_conf 88799689999999999848--9989999947 |
>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; YP_263340.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4} | Back alignment and structure |
---|
Probab=100.00 E-value=0 Score=312.92 Aligned_cols=353 Identities=17% Similarity=0.129 Sum_probs=219.0 Q ss_pred CCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEECCCCCCCEECCHHHHHHHHHHHHHCCCCCCCCH Q ss_conf 98399945898479999999999997893514137841101200898884778715588999999999863047767795 Q gi|254780821|r 24 PPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNERFRLGVKGGRGRLVEDVELLDVFRRVRRVKSAQNLTI 103 (429) Q Consensus 24 ~~vI~VtGTnGKttt~~~i~~il~~~g~k~g~~tSPhl~~~~Eri~i~~~~~~g~~i~~~~~~~~~~~i~~~~~~~~~t~ 103 (429) .++|+||||||||||++|++++|+.+|++++.++ ++.... ......+.... .......... T Consensus 122 ~~vI~VTGTnGKTTTt~mi~~iL~~~g~~~~~~i-------------Gg~~~~--~~~~~~~~~~~--~~~~~~~~~~-- 182 (524) T 3hn7_A 122 RHVIAVAGTHGKTTTTTMLAWILHYAGIDAGFLI-------------GGVPLV--NTTDTNLQQVF--AHSSYLGTEK-- 182 (524) T ss_dssp SEEEEEECSSCHHHHHHHHHHHHHHTTCCCEEEC-------------SCCBCC--CSSCHHHHHHT--TSSEECCCCC-- T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEE-------------CCCCCC--CCCCCCCCCCC--CCCHHHHHHH-- T ss_conf 8289997888825389999999997299862997-------------570345--77664335677--8733430134-- Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHH----HHHHHHCCCCCCCEEEEEECCCHHCCCCCCCHHHHHHHHHHHCC---CC Q ss_conf 789999999874114462477764447----56764135677515898602500000027852344566653113---79 Q gi|254780821|r 104 FELSIATALVLFSKYPADCAIIEVGLG----GSLDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGIIK---PG 176 (429) Q Consensus 104 FE~lt~~a~~~f~~~~~d~~vlE~GlG----Gr~DaTnvi~~~~vavITnI~~DHle~LG~tle~Ia~eKa~I~k---~~ 176 (429) .......+.|++|+|+.-- +..-.....-+|+++|||||++||+|++| |+++++.+|..+++ ++ T Consensus 183 --------~~~~~~~~~~~~V~E~~e~~~s~~~~~~~~~~~~p~iaviTNI~~DHLd~~~-s~e~~~~ak~~i~~~~~~~ 253 (524) T 3hn7_A 183 --------DDSDNSVNTGYFVIEADEYDSAFFDKRSKFVHYRPRTAILNNLEFDHADIFA-DLDAIQTQFHHMVRMIPST 253 (524) T ss_dssp --------CSSCTTCCCCEEEEECCSCCCBTTBCCCHHHHCCCSEEEECCCCCC-------CHHHHHHHHHHHHTTSCTT T ss_pred --------HHHHHCCCCCEEEEEEECCCHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHH-HHHHHHHHHHHHHHCCCCC T ss_conf --------4554024688799998444301455200014446768999747786732333-0355566777787428878 Q ss_pred CCCCCCCCCCHHHHHHHHHHHHH-----------------CCCCCCCCC----CCCCC---CCCCCEEEEE--ECCCCCC Q ss_conf 83315444717898899998621-----------------056652357----63210---1258524443--1033334 Q gi|254780821|r 177 CPVVIGHQVYDEVREILVSKAEK-----------------MGCPYNVYG----DDFYA---FEKNKCLVYQ--DKISQTN 230 (429) Q Consensus 177 ~~~v~~~~~~~~~~~~i~~~a~~-----------------~~~~~~~~~----~~~~~---~~~~~~~~~~--~~~~~~~ 230 (429) ..+|++.+ ++.+.+.+.+.+.. ...+...++ .++.. ...+..+.+. +...... T Consensus 254 g~~V~n~d-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~~~~~~~~~~~~~~~~~~~ 332 (524) T 3hn7_A 254 GKIIMPAA-TISLEDTLAKGVWTPIWRTSVIDSTISSVRREDSPLENSQAENSSDWQAELISADGSQFTVSFNDNKEATA 332 (524) T ss_dssp SEEEEESS-CHHHHHHHHTCCCSCEEEEEEEC-------------------CCCSEEEEEEETTTTEEEEEETTEEEEEE T ss_pred CCEEECCC-HHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCEEEECCCCCCEEEEEEEEECCCCEEEEEECCCCEEE T ss_conf 85475340-45699999987643103431111011111134653022035546549999998548713564311564047 Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHCCCCCCCCC-CCCCEEEEECCCCCCCCCCCCEEEEECCCCHHHHHHH Q ss_conf 444443222211111469999875320000110011222233-6653035422875444578745999336321579988 Q gi|254780821|r 231 LTVLGLVGEHQYINAATAICAVQMAGFTLEKECINAALQSVQ-WFGRLQKITEGPLLNKLPDHSEVWIDGGHNPNAGLVV 309 (429) Q Consensus 231 ~~~l~l~G~hn~~Na~~Aiaa~~~lg~~i~~~~I~~gL~~~~-~pGR~e~i~~~~~~~~~~~~~~viiD~AHNp~s~~~l 309 (429) ...++++|.||++|+++|++++..+|+ +.+.|+++|++++ .|||||++.. .++..++.||||||++++++ T Consensus 333 ~~~l~l~G~hNv~NalaAia~a~~lGi--~~~~i~~~L~~f~g~~~R~e~i~~-------~~~~~viDDYahnP~si~a~ 403 (524) T 3hn7_A 333 LVNWSMSGLHNVNNALVAIAAAYNIGV--SVKTACAALSAFAGIKRRMELIGD-------VNDILVFDDFAHHPTAITTT 403 (524) T ss_dssp EEECSCCSHHHHHHHHHHHHHHHHTTC--CHHHHHHHHHTCCCBTTSSEEEEE-------ETTEEEEEECCCSHHHHHHH T ss_pred EEEECCCCHHHHHHHHHHHHHHHHCCC--CHHEEEECCCCCCCCHHHHEEEEE-------CCCCEEEEECCCCHHHHHHH T ss_conf 898357771999999999999997199--604022200046773324035640-------47815997347998999999 Q ss_pred HHHHHHHCCCCCCCEEEEECCCCC---C-CHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHH---HHCCCC Q ss_conf 865433114777712431134679---8-989999988863888999842288998421278989999999---854997 Q gi|254780821|r 310 SKEISKLKGSSNKPFYLVIGMVEG---K-KYGRYLEAFVELSPIVLSVSLICRGRERQSISITPKVLMQEA---KKLGFQ 382 (429) Q Consensus 310 ~~~l~~l~~~~~~~i~~I~G~~~d---K-d~~~~l~~l~~~~d~i~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~ 382 (429) ++.++... +.+++++||+..+. + ...+.+......+|.++........ ..+....... .....+ T Consensus 404 l~al~~~~--~~~rii~v~~~~~~s~~~~~~~~~~~~~~~~aD~vi~~~~~~~~-------~~~~~~~~~~~~~~~~~~~ 474 (524) T 3hn7_A 404 LDGAKKKL--ADRRLWAIIEPRSNTMKMGIHQDSLAQSATLADHTLWYEPTGLE-------WGLKEVIDNATIANPSIGS 474 (524) T ss_dssp HHHHHHHH--TTSCEEEEEECCCCSSCCSCCTTHHHHHTTTSSEEEEECCTTCC-------CSHHHHHHHHHHHCGGGCC T ss_pred HHHHHHHC--CCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCEEEECCCCCCC-------CCHHHHHHHHHHHCCCCCC T ss_conf 99999766--99859999888998421346689999999749999997888766-------4878788799874345788 Q ss_pred EEEECCHHHHHHHHHHHCCCCCCCEEEE--ECCHHHHHH-HHHHCC Q ss_conf 8996998999999998603588679999--497799999-999879 Q gi|254780821|r 383 AMACSSMIEALSRVRKINEELPPPLILI--AGSLYLAGE-ALRENG 425 (429) Q Consensus 383 ~~~~~~~~eAi~~a~~~~~~~~~d~VLV--~GS~ylvge-~l~~~g 425 (429) ...++++++|++.+.+.+ +++|+||+ +||++-+++ ++..++ T Consensus 475 ~~~~~~~~eai~~~~~~a--~~gDiVLi~G~G~~~~i~~~ll~~L~ 518 (524) T 3hn7_A 475 QQVLSSVDDIIKHICTHA--KAGDAIVIMSNGGFEGIHQRLLTALG 518 (524) T ss_dssp EEEESCHHHHHHHHHHHC--CTTCEEEEEESSCGGGHHHHHHHHHH T ss_pred EEEECCHHHHHHHHHHHC--CCCCEEEEECCCCHHHHHHHHHHHHH T ss_conf 499899999999999857--99899999879976589999999873 |
>1j6u_A UDP-N-acetylmuramate-alanine ligase MURC; structural genomics, TM0231, JCSG, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 | Back alignment and structure |
---|
Probab=100.00 E-value=0 Score=306.63 Aligned_cols=328 Identities=15% Similarity=0.084 Sum_probs=215.4 Q ss_pred CEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEECCCCCCCEECCHHHHHHHHHHHHHCCCCCCCCHH Q ss_conf 83999458984799999999999978935141378411012008988847787155889999999998630477677957 Q gi|254780821|r 25 PVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNERFRLGVKGGRGRLVEDVELLDVFRRVRRVKSAQNLTIF 104 (429) Q Consensus 25 ~vI~VtGTnGKttt~~~i~~il~~~g~k~g~~tSPhl~~~~Eri~i~~~~~~g~~i~~~~~~~~~~~i~~~~~~~~~t~F 104 (429) ++|+||||||||||+.|++++|+.+|++++.+... . +..++ .. T Consensus 115 ~~IaITGTnGKTTTt~ml~~iL~~~g~~~~~~~~~--------------~--~~~~~----------------~~----- 157 (469) T 1j6u_A 115 EEFAVTGTDGKTTTTAMVAHVLKHLRKSPTVFLGG--------------I--MDSLE----------------HG----- 157 (469) T ss_dssp CEEEEECSSSHHHHHHHHHHHHHHTTCCCEEECSS--------------C--CTTST----------------TS----- T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCCCCEEECCC--------------C--CCCCC----------------CH----- T ss_conf 67999689961469999999860545454120376--------------5--56421----------------00----- Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCC Q ss_conf 89999999874114462477764447567641356775158986025000000278523445666531137983315444 Q gi|254780821|r 105 ELSIATALVLFSKYPADCAIIEVGLGGSLDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGIIKPGCPVVIGHQ 184 (429) Q Consensus 105 E~lt~~a~~~f~~~~~d~~vlE~GlGGr~DaTnvi~~~~vavITnI~~DHle~LG~tle~Ia~eKa~I~k~~~~~v~~~~ 184 (429) ......++.|+|++.- +..-..-+|+++|||||++||+|++|++++.+...|..+++.+..++...+ T Consensus 158 ----------~~~~~~~~~V~E~~~~---~~~~~~~~p~iavitNI~~DHld~~~~~~~~~~~~~~~i~~~~~~~~~~~d 224 (469) T 1j6u_A 158 ----------NYEKGNGPVVYELDES---EEFFSEFSPNYLIITNARGDHLENYGNSLTRYRSAFEKISRNTDLVVTFAE 224 (469) T ss_dssp ----------SEECCSSCEEEEECTT---SGGGGGCCCSEEEECCCCCCCGGGGTTCHHHHHHHHHHHHHTCSEEEEETT T ss_pred ----------HCCCCCCEEEEECCCC---CCCCCEECCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECC T ss_conf ----------0036996079964432---121100068889980673653244242268899999987516881154122 Q ss_pred CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHC Q ss_conf 71789889999862105665235763210125852444310333344444432222111114699998753200001100 Q gi|254780821|r 185 VYDEVREILVSKAEKMGCPYNVYGDDFYAFEKNKCLVYQDKISQTNLTVLGLVGEHQYINAATAICAVQMAGFTLEKECI 264 (429) Q Consensus 185 ~~~~~~~~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~~Aiaa~~~lg~~i~~~~I 264 (429) ++ ...................... ......................++++|.||++|+++|++++..+|+ +.+.| T Consensus 225 -d~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~G~hNv~NalaAia~a~~~Gi--~~~~i 299 (469) T 1j6u_A 225 -DE-LTSHLGDVTFGVKKGTYTLEMR-SASRAEQKAMVEKNGKRYLELKLKVPGFHNVLNALAVIALFDSLGY--DLAPV 299 (469) T ss_dssp -CT-TTGGGCSEEECSSSSSEEEEEE-EECSSCEEEEEEETTEEEEEEEESSCSHHHHHHHHHHHHHHHHTTC--CHHHH T ss_pred -HH-HHHHHHHCCCCCCCCCCCCCCC-CCCCCCCCEEEEECCCCCEEEEEEECCHHHHHHHHHHHHHHHHCCC--CHHHH T ss_conf -05-5655543022222343111221-1223454047750586202557720138889889999999998299--99999 Q ss_pred CCCCCCCC-CCCCEEEEECCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCC---CHHHHH Q ss_conf 11222233-66530354228754445787459993363215799888654331147777124311346798---989999 Q gi|254780821|r 265 NAALQSVQ-WFGRLQKITEGPLLNKLPDHSEVWIDGGHNPNAGLVVSKEISKLKGSSNKPFYLVIGMVEGK---KYGRYL 340 (429) Q Consensus 265 ~~gL~~~~-~pGR~e~i~~~~~~~~~~~~~~viiD~AHNp~s~~~l~~~l~~l~~~~~~~i~~I~G~~~dK---d~~~~l 340 (429) .++|+++. .|||||.+...+ ..+..+++||||||+|++++++.++... +++++++||+..++. +...++ T Consensus 300 ~~~l~~f~gv~~R~e~v~~~~-----~~~i~vidDYAHnP~ai~a~l~~l~~~~--~~~~ii~vf~~~~~~r~~~~~~~~ 372 (469) T 1j6u_A 300 LEALEEFRGVHRRFSIAFHDP-----ETNIYVIDDYAHTPDEIRNLLQTAKEVF--ENEKIVVIFQPHRYSRLEREDGNF 372 (469) T ss_dssp HHHHHHCCCCTTSSEEEEEET-----TTTEEEEEECCCSHHHHHHHHHHHHHHC--SSSEEEEEECCBC--------CHH T ss_pred HHHHHCCCCCCCCEEEEEECC-----CCCCEEEEECCCCHHHHHHHHHHHHHHC--CCCCEEEEEECCCCCCHHHHHHHH T ss_conf 988750478788447998628-----8883466404689899999999999765--898289999798886467778999 Q ss_pred HHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHCCCCCCCEEEEE--CCHHHHH Q ss_conf 98886388899984228899842127898999999985499789969989999999986035886799994--9779999 Q gi|254780821|r 341 EAFVELSPIVLSVSLICRGRERQSISITPKVLMQEAKKLGFQAMACSSMIEALSRVRKINEELPPPLILIA--GSLYLAG 418 (429) Q Consensus 341 ~~l~~~~d~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~eAi~~a~~~~~~~~~d~VLV~--GS~ylvg 418 (429) ....+.+|.++.+.+++..+.+. .....+.+.+.++..+.+...+++.+++.+ +. ..+++|+||++ ||++..+ T Consensus 373 ~~a~~~aD~vilt~~~~~~E~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~i~~-~l---~~~~gDiVL~~GaGdi~~~~ 447 (469) T 1j6u_A 373 AKALQLADEVVVTEVYDAFEEKK-NGISGKMIWDSLKSLGKEAYFVEKLPELEK-VI---SVSENTVFLFVGAGDIIYSS 447 (469) T ss_dssp HHHHTTSSEEEECCCBC----------CHHHHHHHHHHTTCCEEECCSGGGHHH-HC---CCCSSEEEEEECSSTHHHHH T ss_pred HHHHHCCCEEEECCCCCCCCCCC-CCCCHHHHHHHHHHCCCCEEECCCHHHHHH-HH---HCCCCCEEEEECCCCHHHHH T ss_conf 99997099999999889988754-587899999999846998598099999999-98---57997999995699989999 Q ss_pred H Q ss_conf 9 Q gi|254780821|r 419 E 419 (429) Q Consensus 419 e 419 (429) . T Consensus 448 ~ 448 (469) T 1j6u_A 448 R 448 (469) T ss_dssp H T ss_pred H T ss_conf 9 |
>2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase, bacterial cell WALL; 2.50A {Escherichia coli} | Back alignment and structure |
---|
Probab=100.00 E-value=1.4e-45 Score=301.28 Aligned_cols=340 Identities=18% Similarity=0.167 Sum_probs=223.7 Q ss_pred CCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEECCCCCCCEECCHHHHHHHHHHHHHCCCCCCCCH Q ss_conf 98399945898479999999999997893514137841101200898884778715588999999999863047767795 Q gi|254780821|r 24 PPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNERFRLGVKGGRGRLVEDVELLDVFRRVRRVKSAQNLTI 103 (429) Q Consensus 24 ~~vI~VtGTnGKttt~~~i~~il~~~g~k~g~~tSPhl~~~~Eri~i~~~~~~g~~i~~~~~~~~~~~i~~~~~~~~~t~ 103 (429) +++|+||||||||||+.|++++|+++|++++.+. |+. +.+.. . . T Consensus 119 ~~~iaVTGTnGKTTtt~ml~~iL~~~g~~~~~~~-------------g~~---~~~~~-------------~--~----- 162 (491) T 2f00_A 119 RHGIAIAGTHGKTTTTAMVSSIYAEAGLDPTFVN-------------GGL---VKAAG-------------V--H----- 162 (491) T ss_dssp SEEEEEESSSCHHHHHHHHHHHHHHTTCCCEEEE-------------EEE---ETTTT-------------E--E----- T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEE-------------CCC---CCCHH-------------H--H----- T ss_conf 7279994567823299999999997599937997-------------164---45024-------------4--2----- Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHCCCCCCCHHHHHHHHHHHCC---CCCCCC Q ss_conf 78999999987411446247776444756764135677515898602500000027852344566653113---798331 Q gi|254780821|r 104 FELSIATALVLFSKYPADCAIIEVGLGGSLDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGIIK---PGCPVV 180 (429) Q Consensus 104 FE~lt~~a~~~f~~~~~d~~vlE~GlGGr~DaTnvi~~~~vavITnI~~DHle~LG~tle~Ia~eKa~I~k---~~~~~v 180 (429) ....+-+++|+|+.- +|.+-.--+|+++|||||++||+|+++.|+|+++..|..|++ ++..+| T Consensus 163 -----------~~~~~~~~~V~E~s~---~~~~~~~~~p~iavitNi~~DHld~~~~~~e~y~~~k~~i~~~~~~~~~~i 228 (491) T 2f00_A 163 -----------ARLGHGRYLIAEADE---SDASFLHLQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAV 228 (491) T ss_dssp -----------EECCSSSEEEEECCC---TTSGGGGCCCSEEEECCCCSCSGGGTTTCHHHHHHHHHHHHTTSCTTCEEE T ss_pred -----------HCCCCCCEEEEEECC---CCCCHHCCCCCEEEEECCCHHHHHHHCCCHHHHHHHHHHHHHCCCCCCEEE T ss_conf -----------025899889999766---401301148989999778667751206889999999999996699588899 Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCC---------CCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHH Q ss_conf 544471789889999862105665235763210---------12585244431033334444443222211111469999 Q gi|254780821|r 181 IGHQVYDEVREILVSKAEKMGCPYNVYGDDFYA---------FEKNKCLVYQDKISQTNLTVLGLVGEHQYINAATAICA 251 (429) Q Consensus 181 ~~~~~~~~~~~~i~~~a~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~~Aiaa 251 (429) ++.+ ++.+.+ .+.........++..... ......+.............++++|.||++|+++|+++ T Consensus 229 ~n~d-d~~~~~----~~~~~~~~v~tfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~HN~~NalAAia~ 303 (491) T 2f00_A 229 MCVD-DPVIRE----LLPRVGRQTTTYGFSEDADVRVEDYQQIGPQGHFTLLRQDKEPMRVTLNAPGRHNALNAAAAVAV 303 (491) T ss_dssp EETT-SHHHHH----HGGGCCSEEEEEESSTTCSEEEEEEEEETTEEEEEEECTTSCCEEEEESSCSHHHHHHHHHHHHH T ss_pred EECC-CHHHHH----HHHHCCCCEEEEECCCCCCEECCCHHHCCCCCCEEEECCCCCCCEEEECCCCCHHHHHHHHHHHH T ss_conf 9798-889999----98754886378600111110012211125665201101234331221035672015349999999 Q ss_pred HHHHHHCCHHHHCCCCCCCCC-CCCCEEEEECCCCCC--CCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCCEEEEE Q ss_conf 875320000110011222233-665303542287544--45787459993363215799888654331147777124311 Q gi|254780821|r 252 VQMAGFTLEKECINAALQSVQ-WFGRLQKITEGPLLN--KLPDHSEVWIDGGHNPNAGLVVSKEISKLKGSSNKPFYLVI 328 (429) Q Consensus 252 ~~~lg~~i~~~~I~~gL~~~~-~pGR~e~i~~~~~~~--~~~~~~~viiD~AHNp~s~~~l~~~l~~l~~~~~~~i~~I~ 328 (429) +..+| ++.+.|.++|.++. .|+|||.+....... ...+...++.||||||++++++++.++... +.+++++++ T Consensus 304 a~~lG--i~~e~I~~aL~~F~g~~~R~E~vg~~~~~~~~~~~~~~~i~DdyahnP~si~a~l~al~~~~--~~~~ii~i~ 379 (491) T 2f00_A 304 ATEEG--IDDEAILRALESFQGTGRRFDFLGEFPLEPVNGKSGTAMLVDDYGHHPTEVDATIKAARAGW--PDKNLVMLF 379 (491) T ss_dssp HHHHT--CCHHHHHHHHHTCCCBTTSSEEEEEEESSSSSSCSSEEEEEEECCCSHHHHHHHHHHHHTTC--CSSEEEEEE T ss_pred HHHCC--CCHHHHHHHHHHCCCCCCCEEEEEEEEEEEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHC--CCCEEEEEE T ss_conf 99859--95788776654047887414899874212342378978999846789589999999999658--997699997 Q ss_pred CCCCCC----CHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCC-CCEEEECCHHHHHHHHHHHCCCC Q ss_conf 346798----9899999888638889998422889984212789899999998549-97899699899999999860358 Q gi|254780821|r 329 GMVEGK----KYGRYLEAFVELSPIVLSVSLICRGRERQSISITPKVLMQEAKKLG-FQAMACSSMIEALSRVRKINEEL 403 (429) Q Consensus 329 G~~~dK----d~~~~l~~l~~~~d~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~eAi~~a~~~~~~~ 403 (429) +.-.+. -++++.+.+ ..+|.++...+++..+.+ ....+.+.+++.+...+ .++..+++.++|++.+.+.+ + T Consensus 380 ~~~~~~~~~~~~~e~~~~l-~~aD~vil~~i~~a~e~~-~~g~~~~~l~~~i~~~~~~~~~~~~~~~ea~~~l~~~~--~ 455 (491) T 2f00_A 380 QPHRFTRTRDLYDDFANVL-TQVDTLLMLEVYPAGEAP-IPGADSRSLCRTIRGRGKIDPILVPDPARVAEMLAPVL--T 455 (491) T ss_dssp CCBCHHHHTTTHHHHHHHH-TTSSEEEECCCBCSSSCC-CTTSSHHHHTTC-------CCEECCCSSCCHHHHGGGC--C T ss_pred CCCCCCCHHHHHHHHHHHH-HHCCEEEECCCCCCCCCC-CCCCCHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHC--C T ss_conf 6778724799999999999-869999996666886664-45859999999998559989799799999999999758--9 Q ss_pred CCCEEEEEC--CHHHHHHHHHHCCC Q ss_conf 867999949--77999999998797 Q gi|254780821|r 404 PPPLILIAG--SLYLAGEALRENGV 426 (429) Q Consensus 404 ~~d~VLV~G--S~ylvge~l~~~g~ 426 (429) ++|+||++| |++-+.+.|.+.-. T Consensus 456 ~gDvVL~~Gsg~i~~~~~~l~e~~~ 480 (491) T 2f00_A 456 GNDLILVQGAGNIGKIARSLAEIKL 480 (491) T ss_dssp SEEEEEEECSTTHHHHHHHHHHTTT T ss_pred CCCEEEEECCCCHHHHHHHHHHHHC T ss_conf 9899999889988899999999870 |
>1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A* | Back alignment and structure |
---|
Probab=100.00 E-value=1.6e-43 Score=286.68 Aligned_cols=334 Identities=18% Similarity=0.162 Sum_probs=219.9 Q ss_pred CCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEECCCCCCCEECCHHHHHHHHHHHHHCCCCCCCCH Q ss_conf 98399945898479999999999997893514137841101200898884778715588999999999863047767795 Q gi|254780821|r 24 PPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNERFRLGVKGGRGRLVEDVELLDVFRRVRRVKSAQNLTI 103 (429) Q Consensus 24 ~~vI~VtGTnGKttt~~~i~~il~~~g~k~g~~tSPhl~~~~Eri~i~~~~~~g~~i~~~~~~~~~~~i~~~~~~~~~t~ 103 (429) +++|+||||||||||+.|++++|+++|++++... |+. +.++.. . T Consensus 118 ~~~iaVTGTnGKTTTt~li~~il~~~g~~~~~~~-------------g~~---~~~~~~---------------~----- 161 (475) T 1p3d_A 118 RHGIAVAGTHGKTTTTAMISMIYTQAKLDPTFVN-------------GGL---VKSAGK---------------N----- 161 (475) T ss_dssp SEEEEEESSSCHHHHHHHHHHHHHHTTCCCEEEE-------------EEE---ETTTTE---------------E----- T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEE-------------CCC---CCCCCH---------------H----- T ss_conf 5257886567875179999999997799978998-------------981---465410---------------0----- Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHCCCCCCCHHHHHHHHHHHCC---CCCCCC Q ss_conf 78999999987411446247776444756764135677515898602500000027852344566653113---798331 Q gi|254780821|r 104 FELSIATALVLFSKYPADCAIIEVGLGGSLDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGIIK---PGCPVV 180 (429) Q Consensus 104 FE~lt~~a~~~f~~~~~d~~vlE~GlGGr~DaTnvi~~~~vavITnI~~DHle~LG~tle~Ia~eKa~I~k---~~~~~v 180 (429) ......|+.|+|+.- +|.+-.--+|+++|||||++||+|+++.++|+++..|..|++ ++..+| T Consensus 162 -----------~~~~~~~~~V~E~s~---~~~~~~~~~p~iavitNI~~DHlD~~~~~~e~y~~~k~~i~~~~~~~~~~i 227 (475) T 1p3d_A 162 -----------AHLGASRYLIAEADE---SDASFLHLQPMVSVVTNMEPDHMDTYEGDFEKMKATYVKFLHNLPFYGLAV 227 (475) T ss_dssp -----------EECCSSSEEEEECCC---TTSGGGGCCCSEEEECCCCCCSGGGGTTCHHHHHHHHHHHHTTSCTTCEEE T ss_pred -----------CCCCCCCEEEEEECC---CHHHHHHCCCCEEEEECCCHHHHHHCCCCHHHHHHHHHHHHHCCCCCCEEE T ss_conf -----------336898728999763---445586359988999678712420106889999999999995699488899 Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCC---------CCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHH Q ss_conf 5444717898899998621056652357632101---------2585244431033334444443222211111469999 Q gi|254780821|r 181 IGHQVYDEVREILVSKAEKMGCPYNVYGDDFYAF---------EKNKCLVYQDKISQTNLTVLGLVGEHQYINAATAICA 251 (429) Q Consensus 181 ~~~~~~~~~~~~i~~~a~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~~Aiaa 251 (429) ++.+ ++...... ....+....++.+.... ...................++++|.||++|+++|+++ T Consensus 228 ~n~d-d~~~~~~~----~~~~~~~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~HN~~NalAAiav 302 (475) T 1p3d_A 228 MCAD-DPVLMELV----PKVGRQVITYGFSEQADYRIEDYEQTGFQGHYTVICPNNERINVLLNVPGKHNALNATAALAV 302 (475) T ss_dssp EETT-CHHHHHHH----HHHCSEEEEEESSTTCSEEEEEEEEETTEEEEEEECTTCCEEEEEESSCSHHHHHHHHHHHHH T ss_pred EECC-CHHHHHHH----HHHCCCEEEECCCCCCCCCCCCCHHHCCCCCEEECCCCCCEEEEEECCCCHHHHHHHHHHHHH T ss_conf 9688-67887667----863785799525766552211100001465200012444201220046754669999999999 Q ss_pred HHHHHHCCHHHHCCCCCCCCC-CCCCEEEEECCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCCEEEEECC Q ss_conf 875320000110011222233-6653035422875444578745999336321579988865433114777712431134 Q gi|254780821|r 252 VQMAGFTLEKECINAALQSVQ-WFGRLQKITEGPLLNKLPDHSEVWIDGGHNPNAGLVVSKEISKLKGSSNKPFYLVIGM 330 (429) Q Consensus 252 ~~~lg~~i~~~~I~~gL~~~~-~pGR~e~i~~~~~~~~~~~~~~viiD~AHNp~s~~~l~~~l~~l~~~~~~~i~~I~G~ 330 (429) +..+|+ +.+.|.++|.++. .|+|||.+.+ .....++..++.||||||++++++++.++... +.+++++++++ T Consensus 303 a~~lGi--~~e~i~~aL~~f~g~~~R~e~~~e---i~~~~~~~~iiDDya~~p~si~a~l~al~~~~--~~~~ii~i~~~ 375 (475) T 1p3d_A 303 AKEEGI--ANEAILEALADFQGAGRRFDQLGE---FIRPNGKVRLVDDYGHHPTEVGVTIKAAREGW--GDKRIVMIFQP 375 (475) T ss_dssp HHHTTC--CHHHHHHHHHTCCCBTTSSEEEEE---EEETTEEEEEEEECCCSHHHHHHHHHHHHHHH--CSSCEEEEECC T ss_pred HHHCCC--CHHHHHHHHHHCCCCCCCCEEEEE---EEECCCCEEEEECCCCCHHHHHHHHHHHHHHC--CCCEEEEEECC T ss_conf 998499--999999767643787531106889---99548978999767889799999999998656--99769999547 Q ss_pred CCCCCHHHHHHHH---HHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCC-CCEEEECCHHHHHHHHHHHCCCCCCC Q ss_conf 6798989999988---8638889998422889984212789899999998549-97899699899999999860358867 Q gi|254780821|r 331 VEGKKYGRYLEAF---VELSPIVLSVSLICRGRERQSISITPKVLMQEAKKLG-FQAMACSSMIEALSRVRKINEELPPP 406 (429) Q Consensus 331 ~~dKd~~~~l~~l---~~~~d~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~eAi~~a~~~~~~~~~d 406 (429) .+..+..++.+.+ ...+|.++...+++..... ......+.+.+.+...+ .++..+++.++|++.+.+.. +++| T Consensus 376 ~~~~~~~~~~~e~~~~l~~~d~vil~~i~~a~e~~-~~g~~~~~i~~~l~~~~~~~~~~~~~~~ea~~~l~~~~--~~gD 452 (475) T 1p3d_A 376 HRYSRTRDLFDDFVQVLSQVDALIMLDVYAAGEAP-IVGADSKSLCRSIRNLGKVDPILVSDTSQLGDVLDQII--QDGD 452 (475) T ss_dssp BCHHHHHHTHHHHHHHHTTSSEEEEECCBCTTCCC-CTTCSHHHHHHHHHHHTSCCCEEESCGGGHHHHHHHHC--CTTC T ss_pred CCCCCHHHHHHHHHHHHHHCCEEEECCCCCCCCCC-CCCCCHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHC--CCCC T ss_conf 77732789999999999849999987766776665-45848999999998608989799699999999999858--9989 Q ss_pred EEEEEC--CHHHHHHHHH Q ss_conf 999949--7799999999 Q gi|254780821|r 407 LILIAG--SLYLAGEALR 422 (429) Q Consensus 407 ~VLV~G--S~ylvge~l~ 422 (429) +||++| |++-+.+.|. T Consensus 453 vVL~~GsG~i~~~~~~l~ 470 (475) T 1p3d_A 453 LILAQGAGSVSKISRGLA 470 (475) T ss_dssp EEEEECSSTHHHHHHHHH T ss_pred EEEEECCCCHHHHHHHHH T ss_conf 999978998899999999 |
>2am1_A SP protein, UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D- alanyl-D-alanine ligase, MURF protein...; HET: 1LG; 2.50A {Streptococcus pneumoniae R6} PDB: 2am2_A* | Back alignment and structure |
---|
Probab=100.00 E-value=0 Score=303.92 Aligned_cols=335 Identities=17% Similarity=0.179 Sum_probs=210.4 Q ss_pred CCCCHHHHHHHHHHCCCHHHHCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEECCCCCCCEECC Q ss_conf 77888999999987299588359839994589847999999999999789351413784110120089888477871558 Q gi|254780821|r 2 AADSLLKMGYLLEDLGRPQDRLPPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNERFRLGVKGGRGRLVE 81 (429) Q Consensus 2 ~~~~l~r~~~ll~~lg~P~~~~~~vI~VtGTnGKttt~~~i~~il~~~g~k~g~~tSPhl~~~~Eri~i~~~~~~g~~i~ 81 (429) .+|.+.-+.+|.+++ .|+.+. ++|+||||||||||++|++++|+..|.+++.. ++. +..+. T Consensus 80 V~d~~~al~~la~~~-~~~~~~-~vIgVTGTnGKTTt~~~l~~iL~~~~~~~~~~--------------gn~---~~~~g 140 (454) T 2am1_A 80 VDDVLTAFQSLASYY-LEKTTV-DVFAVTGSNGKTTTKDMLAHLLSTRYKTYKTQ--------------GNY---NNEIG 140 (454) T ss_dssp CSCHHHHHHHHHHHH-HHHHCC-EEEEEECCCSSSCHHHHHHHHHTTTSCEEECC--------------TTC---CSTTH T ss_pred ECCHHHHHHHHHHHH-HHCCCC-CEEEEECCCCCCCEEHHHHHHHHHHCCCEECC--------------CCC---CCCCC T ss_conf 898999999999999-708898-58999425887732027899877616733316--------------876---87767 Q ss_pred HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHH--HHHHH-HCCCCCCCEEEEEECCCHHCCCC Q ss_conf 8999999999863047767795789999999874114462477764447--56764-13567751589860250000002 Q gi|254780821|r 82 DVELLDVFRRVRRVKSAQNLTIFELSIATALVLFSKYPADCAIIEVGLG--GSLDA-TNIIEKVAVSVITSISLDHEKIL 158 (429) Q Consensus 82 ~~~~~~~~~~i~~~~~~~~~t~FE~lt~~a~~~f~~~~~d~~vlE~GlG--Gr~Da-Tnvi~~~~vavITnI~~DHle~L 158 (429) .. ++ ..-...+.+++|+|+|.. |..+. +. +-+|+++|||||++||+|++ T Consensus 141 ---~~--------------------~~----~~~~~~~~~~~v~E~~~~~~~~~~~l~~-~~~p~iaviTNI~~dHld~~ 192 (454) T 2am1_A 141 ---LP--------------------YT----VLHMPEGTEKLVLEMGQDHLGDIHLLSE-LARPKTAIVTLVGEAHLAFF 192 (454) T ss_dssp ---HH--------------------HH----HHTCCTTCCEEEEECCCSSTTHHHHHHH-HHCCSEEEECCCCCSSCTTC T ss_pred ---CH--------------------HH----HHHCCCCHHHHHHHHHCCCCHHHHHHHC-CCCCCEEEEECCCHHHHHHH T ss_conf ---37--------------------88----8734221036788860354213788725-67996899908866765541 Q ss_pred CCCHHHHHHHHHHHCC---CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCC--CCCCCCCC---CCCCCEEEEEECCCCCC Q ss_conf 7852344566653113---7983315444717898899998621056652--35763210---12585244431033334 Q gi|254780821|r 159 GNTVSAIAKDKSGIIK---PGCPVVIGHQVYDEVREILVSKAEKMGCPYN--VYGDDFYA---FEKNKCLVYQDKISQTN 230 (429) Q Consensus 159 G~tle~Ia~eKa~I~k---~~~~~v~~~~~~~~~~~~i~~~a~~~~~~~~--~~~~~~~~---~~~~~~~~~~~~~~~~~ 230 (429) | |+|+|+.+|+.|++ ++..++.++ + +..... ........ ..+.+... ........+.... ... T Consensus 193 ~-s~e~y~~~K~~lf~~~~~~~~vi~~d-d-~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 263 (454) T 2am1_A 193 K-DRSEIAKGKMQIADGMASGSLLLAPA-D-PIVEDY-----LPIDKKVVRFGQGAELEITDLVERKDSLTFKANF-LEQ 263 (454) T ss_dssp C-CHHHHHHHHGGGGTTCCTTCEEEEES-C-GGGGGG-----CCSSSEEEEESTTSSBCEEEEEECSSCEEEEETT-CSS T ss_pred C-CHHHHHHHHHHHHHCCCCCCCEECCC-C-HHHHHH-----HHHCCCCCCCCCCCCEEHHHHHHCCCCCCCCCCC-CCC T ss_conf 0-06899998888873467545220267-7-899998-----7530233200456420013322034554212454-323 Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHCCCCCCCCC-CCCCEEEEECCCCCCCCCCCCEEEE-ECCCCHHHHHH Q ss_conf 444443222211111469999875320000110011222233-6653035422875444578745999-33632157998 Q gi|254780821|r 231 LTVLGLVGEHQYINAATAICAVQMAGFTLEKECINAALQSVQ-WFGRLQKITEGPLLNKLPDHSEVWI-DGGHNPNAGLV 308 (429) Q Consensus 231 ~~~l~l~G~hn~~Na~~Aiaa~~~lg~~i~~~~I~~gL~~~~-~pGR~e~i~~~~~~~~~~~~~~vii-D~AHNp~s~~~ 308 (429) ...++++|.||++|+++|++++..+|+ +.+.|.++|.++. .|||||++.. .++..++. ||||||+|+++ T Consensus 264 ~~~~~~~G~~nv~N~laAia~~~~lg~--~~~~i~~~l~~~~~~~~R~e~~~~-------~~~~~iidDsya~nP~s~~~ 334 (454) T 2am1_A 264 ALDLPVTGKYNATNAMIASYVALQEGV--SEEQIRLAFQHLELTRNRTEWKKA-------ANGADILSDVYNANPTAMKL 334 (454) T ss_dssp EEEESSCCHHHHHHHHHHHHHHHHTTC--CHHHHHHHGGGCCCCCCCSCEECC-------TTTCEEEEECSCCSHHHHHH T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHCC--CHHHEEECCCCCCCCCCCCEEEEC-------CCCCEEEEEECCCCHHHHHH T ss_conf 433355667899999999999987335--312212001245665530016873-------79926865623699999999 Q ss_pred HHHHHHHHCCCCCCCEEEEECCCCC--CCHHHHHHHHH-----HHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHC-C Q ss_conf 8865433114777712431134679--89899999888-----63888999842288998421278989999999854-9 Q gi|254780821|r 309 VSKEISKLKGSSNKPFYLVIGMVEG--KKYGRYLEAFV-----ELSPIVLSVSLICRGRERQSISITPKVLMQEAKKL-G 380 (429) Q Consensus 309 l~~~l~~l~~~~~~~i~~I~G~~~d--Kd~~~~l~~l~-----~~~d~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~ 380 (429) ++++++.+.....+|+++|+|.+.+ .+....-+.+. ..+|.++++.. .+..+.+..... . T Consensus 335 aL~~l~~~~~~~~gr~I~VlG~m~e~G~~~~~~h~~i~~~ia~~~~d~vi~~g~------------~~~~~~~~~~~~~~ 402 (454) T 2am1_A 335 ILETFSAIPANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLDIVIFYGE------------DIAQLAQLASQMFP 402 (454) T ss_dssp HHHHHTTSCCCSSCEEEEEEECCCCCCTTHHHHHHHGGGGCCTTTCSEEEEEES------------TTHHHHHHHHHHSC T ss_pred HHHHHHHHHHCCCCCEEEEECCCHHCCCHHHHHHHHHHHHHHHCCCCEEEEECC------------CHHHHHHHHHHHCC T ss_conf 999998633203786699978620015358999999999999829989999798------------88999999986224 Q ss_pred --C-----CEEEECCHHHHHHHHHHHCCCCCCCEEEEECCHH Q ss_conf --9-----7899699899999999860358867999949779 Q gi|254780821|r 381 --F-----QAMACSSMIEALSRVRKINEELPPPLILIAGSLY 415 (429) Q Consensus 381 --~-----~~~~~~~~~eAi~~a~~~~~~~~~d~VLV~GS~y 415 (429) . ++..++++++|++.+.+.. +++|+||++||-. T Consensus 403 ~~~~~~~~~~~~~~~~~~ai~~~~~~~--~~gDvVLiKGSr~ 442 (454) T 2am1_A 403 IGHVYYFKKTEDQDQFEDLVKQVKESL--GAHDQILLKGSNS 442 (454) T ss_dssp TTCEEEEEBSSSCBTHHHHHHHHHHHC--CTTEEEEEESSCC T ss_pred CCCCCCCCCCEECCCHHHHHHHHHHHC--CCCCEEEEEECCH T ss_conf 354114553021278999999999637--9999899983754 |