HHsearch alignment for GI: 254780821 and conserved domain: COG0771
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane].
Probab=100.00 E-value=1.9e-38 Score=256.64 Aligned_cols=317 Identities=23% Similarity=0.318 Sum_probs=211.5
Q ss_pred CCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEECCCCCCCEECCHHHHHHHHHHHHHCCCCCCCCH
Q ss_conf 98399945898479999999999997893514137841101200898884778715588999999999863047767795
Q gi|254780821|r 24 PPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNERFRLGVKGGRGRLVEDVELLDVFRRVRRVKSAQNLTI 103 (429)
Q Consensus 24 ~~vI~VtGTnGKttt~~~i~~il~~~g~k~g~~tSPhl~~~~Eri~i~~~~~~g~~i~~~~~~~~~~~i~~~~~~~~~t~ 103 (429)
T Consensus 110 ~p~vaITGTNGKTTTTsli~~~l~~~G~~~~l---------------gGNI--G~p~l~~-------------------- 152 (448)
T COG0771 110 APIVAITGTNGKTTTTSLIAHLLKAAGLDALL---------------GGNI--GTPALEL-------------------- 152 (448)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHCCCCCEE---------------CCCC--CCCHHHH--------------------
T ss_conf 99899979996288999999999855998321---------------3516--7137876--------------------
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHCCCCCCCHHHHHHHHHHHCCCCC-CCCCC
Q ss_conf 78999999987411446247776444756764135677515898602500000027852344566653113798-33154
Q gi|254780821|r 104 FELSIATALVLFSKYPADCAIIEVGLGGSLDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGIIKPGC-PVVIG 182 (429)
Q Consensus 104 FE~lt~~a~~~f~~~~~d~~vlE~GlGGr~DaTnvi~~~~vavITnI~~DHle~LG~tle~Ia~eKa~I~k~~~-~~v~~ 182 (429)
T Consensus 153 ---~~-------~~~~~d~~VlElSS-fQL~~~~~~-~P~iavilNi~~DHLD~H~-s~e~Y~~aK~~i~~~~~~~~Vin 219 (448)
T COG0771 153 ---LE-------QAEPADVYVLELSS-FQLETTSSL-RPEIAVILNISEDHLDRHG-SMENYAAAKLRILEGQTEVAVIN 219 (448)
T ss_pred ---HC-------CCCCCCEEEEECCC-CCCCCCCCC-CCCEEEEECCCHHHHHHCC-CHHHHHHHHHHHHCCCCCEEEEE
T ss_conf ---20-------15789879999245-551657667-8557999448877865606-99999999999983896279983
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCCCCCCC--CCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCH
Q ss_conf 44717898899998621056652357632--1012585244431033334444443222211111469999875320000
Q gi|254780821|r 183 HQVYDEVREILVSKAEKMGCPYNVYGDDF--YAFEKNKCLVYQDKISQTNLTVLGLVGEHQYINAATAICAVQMAGFTLE 260 (429)
Q Consensus 183 ~~~~~~~~~~i~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~~Aiaa~~~lg~~i~ 260 (429)
T Consensus 220 ~d-d~~~~~~~~~~-~~~~~~~fs~~~~~~~~~~~~~~~~~~~~-~~i~~~~~l~l~G~hn~~N~lAa~a~a~~~g--v~ 294 (448)
T COG0771 220 AD-DAYLKTLADEA-TKARVIWFSFGEPLADGDYIYDGKLVFKG-EKLLPADELKLPGAHNLENALAALALARALG--VP 294 (448)
T ss_pred CC-CHHHHHHHHHC-CCCEEEEEECCCCCCCCCEEECCHHCCCC-CCCCCHHHCCCCCHHHHHHHHHHHHHHHHCC--CC
T ss_conf 77-27776544303-66326889746645566334340110353-0003342158754524998999999999839--99
Q ss_pred HHHCCCCCCCCC-CCCCEEEEECCCCCCCCCCCCEEEEEC-CCCHHHHHHHHHHHHHHCCCCCCCEEEEECCC-CCCCHH
Q ss_conf 110011222233-665303542287544457874599933-63215799888654331147777124311346-798989
Q gi|254780821|r 261 KECINAALQSVQ-WFGRLQKITEGPLLNKLPDHSEVWIDG-GHNPNAGLVVSKEISKLKGSSNKPFYLVIGMV-EGKKYG 337 (429)
Q Consensus 261 ~~~I~~gL~~~~-~pGR~e~i~~~~~~~~~~~~~~viiD~-AHNp~s~~~l~~~l~~l~~~~~~~i~~I~G~~-~dKd~~ 337 (429)
T Consensus 295 ~e~i~~~L~~F~gl~HR~e~v~~~-------~gv~f~NDSKATN~~At~~AL~~~------~-~~v~lI~GG~~Kg~df~ 360 (448)
T COG0771 295 PEAILEALSSFTGLPHRLEFVGEK-------DGVLFINDSKATNVDATLAALSGF------D-GPVILIAGGDDKGADFS 360 (448)
T ss_pred HHHHHHHHHHCCCCCCCEEEEEEC-------CCEEEECCCCCCCHHHHHHHHHCC------C-CCEEEEECCCCCCCCHH
T ss_conf 899999997389998622798861-------988996078788888999999718------9-97799977778888816
Q ss_pred HHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHCCCCCCCEEEE---ECC-
Q ss_conf 9999888638889998422889984212789899999998549978996998999999998603588679999---497-
Q gi|254780821|r 338 RYLEAFVELSPIVLSVSLICRGRERQSISITPKVLMQEAKKLGFQAMACSSMIEALSRVRKINEELPPPLILI---AGS- 413 (429)
Q Consensus 338 ~~l~~l~~~~d~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~eAi~~a~~~~~~~~~d~VLV---~GS- 413 (429)
T Consensus 361 ~L~~~~~~~~~~~~~~------------G~~~~~i~~~l~~~~~~~~~~~~le~Av~~a~~~a--~~gd~VLLSPacASf 426 (448)
T COG0771 361 PLAEILAKVIKKLVLI------------GEDAEKIAAALKEAGPSLVICETLEEAVQLARELA--QPGDVVLLSPACASF 426 (448)
T ss_pred HHHHHHHHCCEEEEEE------------CCCHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHH--CCCCEEEECCCCCCH
T ss_conf 8899774155599994------------78889999998752785361476999999999872--589869976442164
Q ss_pred -----HHHHHHHHHH
Q ss_conf -----7999999998
Q gi|254780821|r 414 -----LYLAGEALRE 423 (429)
Q Consensus 414 -----~ylvge~l~~ 423 (429)
T Consensus 427 Dqf~~feeRG~~F~~ 441 (448)
T COG0771 427 DQFKNFEERGEEFKE 441 (448)
T ss_pred HHHCCHHHHHHHHHH
T ss_conf 222379999999999