HHsearch alignment for GI: 254780821 and conserved domain: COG0771

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane].
Probab=100.00  E-value=1.9e-38  Score=256.64  Aligned_cols=317  Identities=23%  Similarity=0.318  Sum_probs=211.5

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEECCCCCCCEECCHHHHHHHHHHHHHCCCCCCCCH
Q ss_conf             98399945898479999999999997893514137841101200898884778715588999999999863047767795
Q gi|254780821|r   24 PPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNERFRLGVKGGRGRLVEDVELLDVFRRVRRVKSAQNLTI  103 (429)
Q Consensus        24 ~~vI~VtGTnGKttt~~~i~~il~~~g~k~g~~tSPhl~~~~Eri~i~~~~~~g~~i~~~~~~~~~~~i~~~~~~~~~t~  103 (429)
T Consensus       110 ~p~vaITGTNGKTTTTsli~~~l~~~G~~~~l---------------gGNI--G~p~l~~--------------------  152 (448)
T COG0771         110 APIVAITGTNGKTTTTSLIAHLLKAAGLDALL---------------GGNI--GTPALEL--------------------  152 (448)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHHHCCCCCEE---------------CCCC--CCCHHHH--------------------
T ss_conf             99899979996288999999999855998321---------------3516--7137876--------------------


Q ss_pred             HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHCCCCCCCHHHHHHHHHHHCCCCC-CCCCC
Q ss_conf             78999999987411446247776444756764135677515898602500000027852344566653113798-33154
Q gi|254780821|r  104 FELSIATALVLFSKYPADCAIIEVGLGGSLDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGIIKPGC-PVVIG  182 (429)
Q Consensus       104 FE~lt~~a~~~f~~~~~d~~vlE~GlGGr~DaTnvi~~~~vavITnI~~DHle~LG~tle~Ia~eKa~I~k~~~-~~v~~  182 (429)
T Consensus       153 ---~~-------~~~~~d~~VlElSS-fQL~~~~~~-~P~iavilNi~~DHLD~H~-s~e~Y~~aK~~i~~~~~~~~Vin  219 (448)
T COG0771         153 ---LE-------QAEPADVYVLELSS-FQLETTSSL-RPEIAVILNISEDHLDRHG-SMENYAAAKLRILEGQTEVAVIN  219 (448)
T ss_pred             ---HC-------CCCCCCEEEEECCC-CCCCCCCCC-CCCEEEEECCCHHHHHHCC-CHHHHHHHHHHHHCCCCCEEEEE
T ss_conf             ---20-------15789879999245-551657667-8557999448877865606-99999999999983896279983


Q ss_pred             CCCCHHHHHHHHHHHHHCCCCCCCCCCCC--CCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCH
Q ss_conf             44717898899998621056652357632--1012585244431033334444443222211111469999875320000
Q gi|254780821|r  183 HQVYDEVREILVSKAEKMGCPYNVYGDDF--YAFEKNKCLVYQDKISQTNLTVLGLVGEHQYINAATAICAVQMAGFTLE  260 (429)
Q Consensus       183 ~~~~~~~~~~i~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~~Aiaa~~~lg~~i~  260 (429)
T Consensus       220 ~d-d~~~~~~~~~~-~~~~~~~fs~~~~~~~~~~~~~~~~~~~~-~~i~~~~~l~l~G~hn~~N~lAa~a~a~~~g--v~  294 (448)
T COG0771         220 AD-DAYLKTLADEA-TKARVIWFSFGEPLADGDYIYDGKLVFKG-EKLLPADELKLPGAHNLENALAALALARALG--VP  294 (448)
T ss_pred             CC-CHHHHHHHHHC-CCCEEEEEECCCCCCCCCEEECCHHCCCC-CCCCCHHHCCCCCHHHHHHHHHHHHHHHHCC--CC
T ss_conf             77-27776544303-66326889746645566334340110353-0003342158754524998999999999839--99


Q ss_pred             HHHCCCCCCCCC-CCCCEEEEECCCCCCCCCCCCEEEEEC-CCCHHHHHHHHHHHHHHCCCCCCCEEEEECCC-CCCCHH
Q ss_conf             110011222233-665303542287544457874599933-63215799888654331147777124311346-798989
Q gi|254780821|r  261 KECINAALQSVQ-WFGRLQKITEGPLLNKLPDHSEVWIDG-GHNPNAGLVVSKEISKLKGSSNKPFYLVIGMV-EGKKYG  337 (429)
Q Consensus       261 ~~~I~~gL~~~~-~pGR~e~i~~~~~~~~~~~~~~viiD~-AHNp~s~~~l~~~l~~l~~~~~~~i~~I~G~~-~dKd~~  337 (429)
T Consensus       295 ~e~i~~~L~~F~gl~HR~e~v~~~-------~gv~f~NDSKATN~~At~~AL~~~------~-~~v~lI~GG~~Kg~df~  360 (448)
T COG0771         295 PEAILEALSSFTGLPHRLEFVGEK-------DGVLFINDSKATNVDATLAALSGF------D-GPVILIAGGDDKGADFS  360 (448)
T ss_pred             HHHHHHHHHHCCCCCCCEEEEEEC-------CCEEEECCCCCCCHHHHHHHHHCC------C-CCEEEEECCCCCCCCHH
T ss_conf             899999997389998622798861-------988996078788888999999718------9-97799977778888816


Q ss_pred             HHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHCCCCCCCEEEE---ECC-
Q ss_conf             9999888638889998422889984212789899999998549978996998999999998603588679999---497-
Q gi|254780821|r  338 RYLEAFVELSPIVLSVSLICRGRERQSISITPKVLMQEAKKLGFQAMACSSMIEALSRVRKINEELPPPLILI---AGS-  413 (429)
Q Consensus       338 ~~l~~l~~~~d~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~eAi~~a~~~~~~~~~d~VLV---~GS-  413 (429)
T Consensus       361 ~L~~~~~~~~~~~~~~------------G~~~~~i~~~l~~~~~~~~~~~~le~Av~~a~~~a--~~gd~VLLSPacASf  426 (448)
T COG0771         361 PLAEILAKVIKKLVLI------------GEDAEKIAAALKEAGPSLVICETLEEAVQLARELA--QPGDVVLLSPACASF  426 (448)
T ss_pred             HHHHHHHHCCEEEEEE------------CCCHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHH--CCCCEEEECCCCCCH
T ss_conf             8899774155599994------------78889999998752785361476999999999872--589869976442164


Q ss_pred             -----HHHHHHHHHH
Q ss_conf             -----7999999998
Q gi|254780821|r  414 -----LYLAGEALRE  423 (429)
Q Consensus       414 -----~ylvge~l~~  423 (429)
T Consensus       427 Dqf~~feeRG~~F~~  441 (448)
T COG0771         427 DQFKNFEERGEEFKE  441 (448)
T ss_pred             HHHCCHHHHHHHHHH
T ss_conf             222379999999999