HHsearch alignment for GI: 254780821 and conserved domain: COG0773

>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane].
Probab=100.00  E-value=1.2e-38  Score=257.96  Aligned_cols=342  Identities=21%  Similarity=0.241  Sum_probs=228.8

Q ss_pred             HHHHHHHHHCCCHHHHCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEECCCCCCCEECCHHHHH
Q ss_conf             99999998729958835983999458984799999999999978935141378411012008988847787155889999
Q gi|254780821|r    7 LKMGYLLEDLGRPQDRLPPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNERFRLGVKGGRGRLVEDVELL   86 (429)
Q Consensus         7 ~r~~~ll~~lg~P~~~~~~vI~VtGTnGKttt~~~i~~il~~~g~k~g~~tSPhl~~~~Eri~i~~~~~~g~~i~~~~~~   86 (429)
T Consensus        95 ~r~e~L~elm~----~-~~~iaVaGTHGKTTTTsmla~vl~~~gldPtf-------------~iGG~-----~-~-----  145 (459)
T COG0773          95 SRAEMLAELMR----F-RTSIAVAGTHGKTTTTSMLAWVLEAAGLDPTF-------------LIGGI-----L-K-----  145 (459)
T ss_pred             CHHHHHHHHHH----C-CEEEEEECCCCCHHHHHHHHHHHHHCCCCCEE-------------EECCC-----C-C-----
T ss_conf             28999999970----7-71699947887540899999999867999879-------------97774-----4-5-----


Q ss_pred             HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHCCCCCCCHHHHH
Q ss_conf             99999863047767795789999999874114462477764447567641356775158986025000000278523445
Q gi|254780821|r   87 DVFRRVRRVKSAQNLTIFELSIATALVLFSKYPADCAIIEVGLGGSLDATNIIEKVAVSVITSISLDHEKILGNTVSAIA  166 (429)
Q Consensus        87 ~~~~~i~~~~~~~~~t~FE~lt~~a~~~f~~~~~d~~vlE~GlGGr~DaTnvi~~~~vavITnI~~DHle~LG~tle~Ia  166 (429)
T Consensus       146 -------~~g~na~~----------------g~~~~fV~EAD---EsD~sFl~~~P~~aIvTNid~DH~D~y~-~~~~i~  198 (459)
T COG0773         146 -------NFGTNARL----------------GSGDYFVAEAD---ESDSSFLHYNPRVAIVTNIEFDHLDYYG-DLEAIK  198 (459)
T ss_pred             -------CCCCCCCC----------------CCCCEEEEEEC---CCCCCCCCCCCCEEEEECCCCCCHHHHC-CHHHHH
T ss_conf             -------57765545----------------88864999951---5416502488978998078834001218-999999


Q ss_pred             H--HHH-HHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCC----CCCCC-----CCCEEEEEECCCCCCCCCC
Q ss_conf             6--665-3113798331544471789889999862105665235763----21012-----5852444310333344444
Q gi|254780821|r  167 K--DKS-GIIKPGCPVVIGHQVYDEVREILVSKAEKMGCPYNVYGDD----FYAFE-----KNKCLVYQDKISQTNLTVL  234 (429)
Q Consensus       167 ~--eKa-~I~k~~~~~v~~~~~~~~~~~~i~~~a~~~~~~~~~~~~~----~~~~~-----~~~~~~~~~~~~~~~~~~l  234 (429)
T Consensus       199 ~~F~~f~~~vp~~G~~v~~~d-d~~l~~l~~~~---~~~~v~tyG~~~~ad~~a~ni~~~~~~~~F~V~~~g~~~~~~~l  274 (459)
T COG0773         199 QAFHHFVRNVPFYGRAVVCGD-DPNLRELLSRG---CWSPVVTYGFDDEADWRAENIRQDGSGTTFDVLFRGEELGEVKL  274 (459)
T ss_pred             HHHHHHHHHCCCCCEEEEECC-CHHHHHHHHCC---CCCCEEEECCCCCCCEEEEEEEEECCCCEEEEEECCCEEEEEEE
T ss_conf             999999983886655999788-88899987222---58737942478767289997687066427999986855679997


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHCCHHHHCCCCCCCCCCC-CCEEEEECCCCCCCCCCCCEEEEECCCCHHHHHHHHHHH
Q ss_conf             4322221111146999987532000011001122223366-530354228754445787459993363215799888654
Q gi|254780821|r  235 GLVGEHQYINAATAICAVQMAGFTLEKECINAALQSVQWF-GRLQKITEGPLLNKLPDHSEVWIDGGHNPNAGLVVSKEI  313 (429)
Q Consensus       235 ~l~G~hn~~Na~~Aiaa~~~lg~~i~~~~I~~gL~~~~~p-GR~e~i~~~~~~~~~~~~~~viiD~AHNp~s~~~l~~~l  313 (429)
T Consensus       275 ~~pG~HNvlNAlaaia~a~~~Gi--~~~~i~~aL~~F~GvkRRfe~~g~~-------~~~~viDDYaHHPtEI~aTL~aa  345 (459)
T COG0773         275 PLPGRHNVLNALAAIAVARELGI--DPEAIAEALASFQGVKRRFELKGEV-------NGVTVIDDYAHHPTEIKATLAAA  345 (459)
T ss_pred             CCCCHHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHCCCCCEEEEEEEEE-------CCEEEEECCCCCHHHHHHHHHHH
T ss_conf             26762268889999999998499--9899999997388964136886468-------87899856888979999999999


Q ss_pred             HHHCCCCCCCEEEEEC---CCCCCC-HHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCH
Q ss_conf             3311477771243113---467989-899999888638889998422889984212789899999998549978996998
Q gi|254780821|r  314 SKLKGSSNKPFYLVIG---MVEGKK-YGRYLEAFVELSPIVLSVSLICRGRERQSISITPKVLMQEAKKLGFQAMACSSM  389 (429)
Q Consensus       314 ~~l~~~~~~~i~~I~G---~~~dKd-~~~~l~~l~~~~d~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  389 (429)
T Consensus       346 R~~~~~-~~rIvaifQPHrySRt~~~~~dF~~~l-~~AD~v~l~~VY~A~e~~~~g~~~~~~l~~~i~~~~~~~--~~~~  421 (459)
T COG0773         346 RQKVPG-GKRIVAVFQPHRYSRTRDLLDDFAKAL-SDADEVILLDVYAAGEEPIEGDVSSEDLAEKIRQPGHVD--VPDL  421 (459)
T ss_pred             HHHCCC-CCEEEEEECCCCHHHHHHHHHHHHHHH-HCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHCCCCCC--CCCH
T ss_conf             976588-866999977873175899999999888-519999996233357888767753999999851377014--7888


Q ss_pred             HHHHHHHHHHCCCCCCCEEEEE--CCH-HHHHHHHHH
Q ss_conf             9999999986035886799994--977-999999998
Q gi|254780821|r  390 IEALSRVRKINEELPPPLILIA--GSL-YLAGEALRE  423 (429)
Q Consensus       390 ~eAi~~a~~~~~~~~~d~VLV~--GS~-ylvge~l~~  423 (429)
T Consensus       422 ~~~~~~l~~~--~~~gD~il~mGAGdi~~~~~~~~~~  456 (459)
T COG0773         422 DDLVELLAKV--AQPGDVILFMGAGDIGKIARELLEA  456 (459)
T ss_pred             HHHHHHHHHH--CCCCCEEEEECCCCHHHHHHHHHHH
T ss_conf             8999999964--7899989996688478899999987