HHsearch alignment for GI: 254780821 and conserved domain: PRK00141
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=100.00 E-value=8.6e-39 Score=258.81 Aligned_cols=302 Identities=17% Similarity=0.186 Sum_probs=191.9
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEECCCCCCCEECCHHHHHHHHHHHHHCCCCCCCCHH
Q ss_conf 83999458984799999999999978935141378411012008988847787155889999999998630477677957
Q gi|254780821|r 25 PVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNERFRLGVKGGRGRLVEDVELLDVFRRVRRVKSAQNLTIF 104 (429)
Q Consensus 25 ~vI~VtGTnGKttt~~~i~~il~~~g~k~g~~tSPhl~~~~Eri~i~~~~~~g~~i~~~~~~~~~~~i~~~~~~~~~t~F 104 (429)
T Consensus 124 ~~IaVTGTnGKTTTtsli~~iL~~~g~~~~~--------------~GN---IG~p~~~~--------l------------ 166 (476)
T PRK00141 124 TWLAVTGTNGKTTTTAMLAAMMQAGGFAAVA--------------VGN---IGIPVSAA--------L------------ 166 (476)
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHCCCCCEE--------------EEE---CCCHHHHH--------H------------
T ss_conf 6388968996798999999999837997289--------------950---67246666--------5------------
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 89999999874114462477764447567641356775158986025000000278523445666531137983315444
Q gi|254780821|r 105 ELSIATALVLFSKYPADCAIIEVGLGGSLDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGIIKPGCPVVIGHQ 184 (429)
Q Consensus 105 E~lt~~a~~~f~~~~~d~~vlE~GlGGr~DaTnvi~~~~vavITnI~~DHle~LG~tle~Ia~eKa~I~k~~~~~v~~~~ 184 (429)
T Consensus 167 ----------~~~~~~d~~VlElSS-fQL~~~~~~-~p~iaVilNIs~DHLD~h~-s~e~Y~~aK~kI~~~~~~vi-~~D 232 (476)
T PRK00141 167 ----------VAQNRIDVLVAELSS-FQLHWAPTF-TPDAGVVLNLAEDHIDWHG-SMRDYALDKARVLTAPVAVI-GAD 232 (476)
T ss_pred ----------HCCCCCCEEEEECCC-CHHCCCCCC-CCCEEEEECCCHHHHHHHC-CHHHHHHHHHHHHCCCCEEE-ECC
T ss_conf ----------257877589997782-012002236-8658987268878986626-99999999998734882499-778
Q ss_pred CCHHHHHHHHHHHHHCCCCCCCCCC--CCCCCCCCCEEEE---EECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 7178988999986210566523576--3210125852444---3103333444444322221111146999987532000
Q gi|254780821|r 185 VYDEVREILVSKAEKMGCPYNVYGD--DFYAFEKNKCLVY---QDKISQTNLTVLGLVGEHQYINAATAICAVQMAGFTL 259 (429)
Q Consensus 185 ~~~~~~~~i~~~a~~~~~~~~~~~~--~~~~~~~~~~~~~---~~~~~~~~~~~l~l~G~hn~~Na~~Aiaa~~~lg~~i 259 (429)
T Consensus 233 -d~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~G~HNl~NalAA~a~a~~lG--i 308 (476)
T PRK00141 233 -DPYVVELTREADLS-GLIGFTLGEPAEGQVGVRAGELVDNAFGDNVVLASADGINPAGPAGVLDALAAAAVARSQG--V 308 (476)
T ss_pred -CHHHHHHHHHCCCC-CEEEECCCCCCCCCEEEECCEEEEEECCCCCEECCHHHCCCCCHHHHHHHHHHHHHHHHCC--C
T ss_conf -78999988744788-6798527875535244776889985157750321243237765335999999999999849--9
Q ss_pred HHHHCCCCCCCCC-CCCCEEEEECCCCCCCCCCCCEEEEEC-CCCHHHHHHHHHHHHHHCCCCCCCEEEEECC-CCCCCH
Q ss_conf 0110011222233-665303542287544457874599933-6321579988865433114777712431134-679898
Q gi|254780821|r 260 EKECINAALQSVQ-WFGRLQKITEGPLLNKLPDHSEVWIDG-GHNPNAGLVVSKEISKLKGSSNKPFYLVIGM-VEGKKY 336 (429)
Q Consensus 260 ~~~~I~~gL~~~~-~pGR~e~i~~~~~~~~~~~~~~viiD~-AHNp~s~~~l~~~l~~l~~~~~~~i~~I~G~-~~dKd~ 336 (429)
T Consensus 309 ~~e~I~~aL~~F~gl~HR~E~v~~-------~~gV~fiNDSKaTN~~at~~AL~~~--------~~iilI~GG~~Kg~d~ 373 (476)
T PRK00141 309 APEAIARALAGFEVAGHRGQVVAE-------HDGVHFIDNSKATNPHAADSALAGH--------ESVIWVAGGQLKGADI 373 (476)
T ss_pred CHHHHHHHHHHCCCCCCCEEEEEE-------ECCEEEECCCCCCCHHHHHHHHHHC--------CCCEEEECCCCCCCCH
T ss_conf 999999999856898861279999-------8999998179899989999999728--------8739994476577787
Q ss_pred HHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCC--CCEEEE------CCHHHHHHHHHHHCCCCCCCEE
Q ss_conf 99999888638889998422889984212789899999998549--978996------9989999999986035886799
Q gi|254780821|r 337 GRYLEAFVELSPIVLSVSLICRGRERQSISITPKVLMQEAKKLG--FQAMAC------SSMIEALSRVRKINEELPPPLI 408 (429)
Q Consensus 337 ~~~l~~l~~~~d~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~------~~~~eAi~~a~~~~~~~~~d~V 408 (429)
T Consensus 374 ~~l~~~~~~~vk~v~l~---G---------~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~av~~a~~~a--~~gd~V 439 (476)
T PRK00141 374 DELIATHGGRIKAALVL---G---------ADRAEIVAAVKEHAPDAPVTVTDKTDPEEAMREAVAAAFSLA--EPGDSV 439 (476)
T ss_pred HHHHHHHHHHCEEEEEE---C---------CCHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHC--CCCCEE
T ss_conf 99999986331099997---6---------898999999985478882688615457889999999999738--898989
Q ss_pred EE
Q ss_conf 99
Q gi|254780821|r 409 LI 410 (429)
Q Consensus 409 LV 410 (429)
T Consensus 440 LL 441 (476)
T PRK00141 440 VL 441 (476)
T ss_pred EE
T ss_conf 98