HHsearch alignment for GI: 254780821 and conserved domain: PRK00421
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional.
Probab=100.00 E-value=0 Score=316.83 Aligned_cols=327 Identities=19% Similarity=0.209 Sum_probs=224.0
Q ss_pred CCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEECCCCCCCEECCHHHHHHHHHHHHHCCCCCCCCH
Q ss_conf 98399945898479999999999997893514137841101200898884778715588999999999863047767795
Q gi|254780821|r 24 PPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNERFRLGVKGGRGRLVEDVELLDVFRRVRRVKSAQNLTI 103 (429)
Q Consensus 24 ~~vI~VtGTnGKttt~~~i~~il~~~g~k~g~~tSPhl~~~~Eri~i~~~~~~g~~i~~~~~~~~~~~i~~~~~~~~~t~ 103 (429)
T Consensus 108 ~~~IaVtGTnGKTTtT~ll~~il~~~g~~~~~~-------------iGg~~--~~~~~----------------~~---- 152 (459)
T PRK00421 108 RTSIAVAGTHGKTTTTSLLAHVLAEAGLDPTFI-------------IGGIL--NAAGT----------------NA---- 152 (459)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEE-------------ECCCC--CCCCC----------------CC----
T ss_conf 964999778886118999999999769987488-------------57533--55665----------------45----
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHCCCCCCCHHHHHHHHHHHC---CCCCCCC
Q ss_conf 7899999998741144624777644475676413567751589860250000002785234456665311---3798331
Q gi|254780821|r 104 FELSIATALVLFSKYPADCAIIEVGLGGSLDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGII---KPGCPVV 180 (429)
Q Consensus 104 FE~lt~~a~~~f~~~~~d~~vlE~GlGGr~DaTnvi~~~~vavITnI~~DHle~LG~tle~Ia~eKa~I~---k~~~~~v 180 (429)
T Consensus 153 ------------~~~~~~~~V~E~d---E~d~sf~~~~P~iavitNI~~DHLD~h~-s~e~Y~~ak~~~~~~~~~~g~~V 216 (459)
T PRK00421 153 ------------RLGSSDYFVAEAD---ESDRSFLKLHPDIAVVTNIDADHLDYYG-DFEDLKDAFQEFAHNLPFYGALV 216 (459)
T ss_pred ------------CCCCCCEEEEEEC---CCCCCHHHCCCCEEEEECCCHHHHHHCC-CHHHHHHHHHHHHHCCCCCCCEE
T ss_conf ------------2588988999953---5414364458989999179877865601-89999999999997199547211
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCCCCC----CCCC-----CCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 54447178988999986210566523576----3210-----12585244431033334444443222211111469999
Q gi|254780821|r 181 IGHQVYDEVREILVSKAEKMGCPYNVYGD----DFYA-----FEKNKCLVYQDKISQTNLTVLGLVGEHQYINAATAICA 251 (429)
Q Consensus 181 ~~~~~~~~~~~~i~~~a~~~~~~~~~~~~----~~~~-----~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~~Aiaa 251 (429)
T Consensus 217 iN~D-D~~~~~l~~----~~~~~vitfg~~~~~d~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~l~G~HNv~NalAAia~ 291 (459)
T PRK00421 217 ACGD-DPELRELLP----RVDRPVITYGFSEDADFRAENIRQDGGGSHFDVLREGEDLGDFTLPLPGRHNVLNALAAIAV 291 (459)
T ss_pred CCCC-CHHHHHHHH----HCCCCCEEECCCCCCCEEEEEEEEECCCEEEEEEECCCEEEEEEECCCHHHHHHHHHHHHHH
T ss_conf 4687-989999877----43886002356876666788899948923899983893788999568638899999999999
Q ss_pred HHHHHHCCHHHHCCCCCCCCC-CCCCEEEEECCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCCEEEEECC
Q ss_conf 875320000110011222233-6653035422875444578745999336321579988865433114777712431134
Q gi|254780821|r 252 VQMAGFTLEKECINAALQSVQ-WFGRLQKITEGPLLNKLPDHSEVWIDGGHNPNAGLVVSKEISKLKGSSNKPFYLVIGM 330 (429)
Q Consensus 252 ~~~lg~~i~~~~I~~gL~~~~-~pGR~e~i~~~~~~~~~~~~~~viiD~AHNp~s~~~l~~~l~~l~~~~~~~i~~I~G~ 330 (429)
T Consensus 292 a~~lGi--~~e~i~~aL~~F~Gv~~R~E~v~~-------~~gv~~idDYAH~P~~i~a~l~alr~~~--~~~rii~vfqP 360 (459)
T PRK00421 292 ALELGI--DDEAIRKALATFKGVKRRFEEKGE-------VNGVVLIDDYAHHPTEIKATLKAARQKY--PDKRIVAVFQP 360 (459)
T ss_pred HHHCCC--CHHHHHHHHHHCCCCCEEEEEEEE-------CCCEEEEEECCCCHHHHHHHHHHHHHHC--CCCCEEEEECC
T ss_conf 998499--999999999753574502799872-------2884799735689389999999999876--89966999867
Q ss_pred ---CCCCCH-HHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCC-CCEEEECCHHHHHHHHHHHCCCCCC
Q ss_conf ---679898-99999888638889998422889984212789899999998549-9789969989999999986035886
Q gi|254780821|r 331 ---VEGKKY-GRYLEAFVELSPIVLSVSLICRGRERQSISITPKVLMQEAKKLG-FQAMACSSMIEALSRVRKINEELPP 405 (429)
Q Consensus 331 ---~~dKd~-~~~l~~l~~~~d~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~eAi~~a~~~~~~~~~ 405 (429)
T Consensus 361 h~~sR~~~~~~e~a~~l-~~aD~vil~~iy~a~E~~-~~g~~~~~i~~~i~~~~~~~~~~~~~~~~ai~~~~~~a--~~g 436 (459)
T PRK00421 361 HRYSRTRDLFDEFAEVL-SDADEVILLDIYAAGEAP-IPGVDSEDLARAIRKRGHVDVIFVPDVDDLAELLADVL--QPG 436 (459)
T ss_pred CCHHHHHHHHHHHHHHH-HCCCEEEECCCCCCCCCC-CCCCCHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHC--CCC
T ss_conf 42054899999999998-719999988875888876-57889999999998608988799699999999999858--998
Q ss_pred CEEEEE--CCHHHHHHHH
Q ss_conf 799994--9779999999
Q gi|254780821|r 406 PLILIA--GSLYLAGEAL 421 (429)
Q Consensus 406 d~VLV~--GS~ylvge~l 421 (429)
T Consensus 437 DvVL~~GaGd~~~~~~~l 454 (459)
T PRK00421 437 DLVLTMGAGDITKLARAL 454 (459)
T ss_pred CEEEEECCCCHHHHHHHH
T ss_conf 999997999989999999