HHsearch alignment for GI: 254780821 and conserved domain: PRK01438
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=100.00 E-value=2e-40 Score=268.91 Aligned_cols=305 Identities=16% Similarity=0.201 Sum_probs=195.8
Q ss_pred CCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEECCCCCCCEECCHHHHHHHHHHHHHCCCCCCCCH
Q ss_conf 98399945898479999999999997893514137841101200898884778715588999999999863047767795
Q gi|254780821|r 24 PPVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNERFRLGVKGGRGRLVEDVELLDVFRRVRRVKSAQNLTI 103 (429)
Q Consensus 24 ~~vI~VtGTnGKttt~~~i~~il~~~g~k~g~~tSPhl~~~~Eri~i~~~~~~g~~i~~~~~~~~~~~i~~~~~~~~~t~ 103 (429)
T Consensus 122 ~~~IaVTGTnGKTTTtsli~~iL~~~g~~~~~--------------~GNI---G~p~l~~--------~----------- 165 (481)
T PRK01438 122 APWLAVTGTNGKTTTVQMLASILRAAGLRAAA--------------VGNI---GVPVLDA--------V----------- 165 (481)
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHCCCCEEE--------------EEEC---CHHHHHH--------H-----------
T ss_conf 87899938997460999999999966997079--------------9625---6777764--------2-----------
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHCCCCCCCHHHHHHHHHHHCCCCCC-CCCC
Q ss_conf 789999999874114462477764447567641356775158986025000000278523445666531137983-3154
Q gi|254780821|r 104 FELSIATALVLFSKYPADCAIIEVGLGGSLDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGIIKPGCP-VVIG 182 (429)
Q Consensus 104 FE~lt~~a~~~f~~~~~d~~vlE~GlGGr~DaTnvi~~~~vavITnI~~DHle~LG~tle~Ia~eKa~I~k~~~~-~v~~ 182 (429)
T Consensus 166 -----------~~~~~~d~~V~ElSS-fqL~~~~~~-~p~iavitNIs~DHLD~h~-s~e~Y~~aK~~If~~~~~~~v~n 231 (481)
T PRK01438 166 -----------RGPDGYDVLAVELSS-FQLHWAPSV-RPHSAAVLNLAPDHLDWHG-SMEAYAADKGRVYEGNTVACVYN 231 (481)
T ss_pred -----------CCCCCCCEEEEECCC-CCCCCCCCC-CCCEEEEECCCHHHHHHHC-CHHHHHHHHHHHHCCCCEEEEEE
T ss_conf -----------288886089998047-651334455-7648997068777866523-59899999999862785149970
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCCCCCCCC-----CCCCC---CEEEEEEC----CCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 447178988999986210566523576321-----01258---52444310----3333444444322221111146999
Q gi|254780821|r 183 HQVYDEVREILVSKAEKMGCPYNVYGDDFY-----AFEKN---KCLVYQDK----ISQTNLTVLGLVGEHQYINAATAIC 250 (429)
Q Consensus 183 ~~~~~~~~~~i~~~a~~~~~~~~~~~~~~~-----~~~~~---~~~~~~~~----~~~~~~~~l~l~G~hn~~Na~~Aia 250 (429)
T Consensus 232 ~-dD~~~~~l~~~~~~~~~~~~i~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~HN~~NalAA~a 310 (481)
T PRK01438 232 V-ADPATEDLVREADVVEGARAIGFTLGTPGPSDLGIVDGILVDRAFVEDRFTSAQELATLSDVGPAAPHNVANALAAAA 310 (481)
T ss_pred C-CCHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCEECCEEEECEEEEECCCCCCCCCCHHHCCCCCHHHHHHHHHHHH
T ss_conf 5-778899999860224477078873588871201210345530203430234530001066406765769999999999
Q ss_pred HHHHHHHCCHHHHCCCCCCCCC-CCCCEEEEECCCCCCCCCCCCEEEEEC-CCCHHHHHHHHHHHHHHCCCCCCCEEEEE
Q ss_conf 9875320000110011222233-665303542287544457874599933-63215799888654331147777124311
Q gi|254780821|r 251 AVQMAGFTLEKECINAALQSVQ-WFGRLQKITEGPLLNKLPDHSEVWIDG-GHNPNAGLVVSKEISKLKGSSNKPFYLVI 328 (429)
Q Consensus 251 a~~~lg~~i~~~~I~~gL~~~~-~pGR~e~i~~~~~~~~~~~~~~viiD~-AHNp~s~~~l~~~l~~l~~~~~~~i~~I~ 328 (429)
T Consensus 311 ~a~~lG--i~~~~i~~aL~~F~Gl~hR~E~v~~-------~~GV~fiNDSKaTN~~A~~~AL~~~--------~~i~lI~ 373 (481)
T PRK01438 311 LARAFG--VSPAAVRDGLRAFRPDAHRIEHVAD-------ADGVTYVDDSKATNPHAAEASLAAY--------PSVVWIA 373 (481)
T ss_pred HHHHCC--CCHHHHHHHHHHCCCCCCEEEEEEE-------ECCEEEECCCCCCCHHHHHHHHHHC--------CCEEEEE
T ss_conf 999829--9889999888634897733789999-------9999998068878988999998724--------9889993
Q ss_pred CC-CCCCCHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCC--EE-----EECCHHHHHHHHHHHC
Q ss_conf 34-6798989999988863888999842288998421278989999999854997--89-----9699899999999860
Q gi|254780821|r 329 GM-VEGKKYGRYLEAFVELSPIVLSVSLICRGRERQSISITPKVLMQEAKKLGFQ--AM-----ACSSMIEALSRVRKIN 400 (429)
Q Consensus 329 G~-~~dKd~~~~l~~l~~~~d~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~-----~~~~~~eAi~~a~~~~ 400 (429)
T Consensus 374 GG~~Kg~d~~~l~~~~~~~vk~~~l~------------G~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~av~~a~~~a 441 (481)
T PRK01438 374 GGLAKGAHFDDLVRAHAARLRGVVLI------------GADRALIREALARHAPDVPVVDVDRTDTEAMARAVRLAARLA 441 (481)
T ss_pred CCCCCCCCHHHHHHHHHHHCEEEEEE------------CCCHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHC
T ss_conf 78657889899999986013399997------------789999999997228987457731023789999999999638
Q ss_pred CCCCCCEEEE
Q ss_conf 3588679999
Q gi|254780821|r 401 EELPPPLILI 410 (429)
Q Consensus 401 ~~~~~d~VLV 410 (429)
T Consensus 442 --~~gd~VLl 449 (481)
T PRK01438 442 --RPGDTVLL 449 (481)
T ss_pred --CCCCEEEE
T ss_conf --99898998