HHsearch alignment for GI: 254780821 and conserved domain: PRK03803
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=100.00 E-value=4.4e-42 Score=279.17 Aligned_cols=315 Identities=20% Similarity=0.277 Sum_probs=210.1
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEECCCCCCCEECCHHHHHHHHHHHHHCCCCCCCCHH
Q ss_conf 83999458984799999999999978935141378411012008988847787155889999999998630477677957
Q gi|254780821|r 25 PVIHIGGTNGKGSVASFSQRLLETSGLSVHVHTSPHLIRWNERFRLGVKGGRGRLVEDVELLDVFRRVRRVKSAQNLTIF 104 (429)
Q Consensus 25 ~vI~VtGTnGKttt~~~i~~il~~~g~k~g~~tSPhl~~~~Eri~i~~~~~~g~~i~~~~~~~~~~~i~~~~~~~~~t~F 104 (429)
T Consensus 110 ~~IaVTGTnGKTTTtsli~~iL~~~g~~~~~---------------gGNi--G~p~~~---------------------- 150 (448)
T PRK03803 110 PIVAITGSNAKSTVTTLVGEMAKAAGKRVAV---------------GGNL--GTPALD---------------------- 150 (448)
T ss_pred CEEEECCCCCHHHHHHHHHHHHHHCCCCEEE---------------EEEC--CCHHHH----------------------
T ss_conf 8899858998388999999999865983799---------------4032--761366----------------------
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 89999999874114462477764447567641356775158986025000000278523445666531137983315444
Q gi|254780821|r 105 ELSIATALVLFSKYPADCAIIEVGLGGSLDATNIIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGIIKPGCPVVIGHQ 184 (429)
Q Consensus 105 E~lt~~a~~~f~~~~~d~~vlE~GlGGr~DaTnvi~~~~vavITnI~~DHle~LG~tle~Ia~eKa~I~k~~~~~v~~~~ 184 (429)
T Consensus 151 ----------~~~~~~~~~VlElSSf-qL~~~~~~-~p~iaVitNI~~DHLD~h~-s~e~Y~~aK~~If~~~~~~v~n~D 217 (448)
T PRK03803 151 ----------LLSDDVELYVLELSSF-QLETTDQL-NAEVATVLNISEDHLDRHG-GMLAYHQAKHRIFRGAKQVVVNRD 217 (448)
T ss_pred ----------HHCCCCCEEEEECCCC-HHHCCCCC-CCCEEEEECCCHHHHHHHC-CHHHHHHHHHHHHCCCCEEEEECC
T ss_conf ----------5258887899986641-12035456-8628998358753654633-899999998777538878999586
Q ss_pred CCHHHHHHHHHHHHHCCCCCCCCCCC---C---CCCCCCCE-EEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 71789889999862105665235763---2---10125852-44431033334444443222211111469999875320
Q gi|254780821|r 185 VYDEVREILVSKAEKMGCPYNVYGDD---F---YAFEKNKC-LVYQDKISQTNLTVLGLVGEHQYINAATAICAVQMAGF 257 (429)
Q Consensus 185 ~~~~~~~~i~~~a~~~~~~~~~~~~~---~---~~~~~~~~-~~~~~~~~~~~~~~l~l~G~hn~~Na~~Aiaa~~~lg~ 257 (429)
T Consensus 218 -d~~~~~l~~~-----~~~~~~f~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~G~HN~~NalAA~a~a~~~Gi 291 (448)
T PRK03803 218 -DALTRPLVAD-----GTPCWSFGLNAPDFGAFGLREEDGEKYLAFGFERLLPVRELKIRGAHNQSNALAALALGEAAGL 291 (448)
T ss_pred -HHHHHHHHHC-----CCCEEEEECCCCCCCCCCEEECCCEEEEECCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf -0888888654-----8857998357765122316953983999616532143333076762359989999999998299
Q ss_pred CCHHHHCCCCCCCCC-CCCCEEEEECCCCCCCCCCCCEEEEEC-CCCHHHHHHHHHHHHHHCCCCCCCEEEEECC-CCCC
Q ss_conf 000110011222233-665303542287544457874599933-6321579988865433114777712431134-6798
Q gi|254780821|r 258 TLEKECINAALQSVQ-WFGRLQKITEGPLLNKLPDHSEVWIDG-GHNPNAGLVVSKEISKLKGSSNKPFYLVIGM-VEGK 334 (429)
Q Consensus 258 ~i~~~~I~~gL~~~~-~pGR~e~i~~~~~~~~~~~~~~viiD~-AHNp~s~~~l~~~l~~l~~~~~~~i~~I~G~-~~dK 334 (429)
T Consensus 292 --~~e~I~~aL~~F~Gl~hR~E~v~~-------~~Gv~fiNDSKaTN~~at~~Al~~~~~---~~~~~iilI~GG~~K~~ 359 (448)
T PRK03803 292 --PMEAMLETLKEFKGLEHRCQWVRE-------VDGVRYYNDSKGTNVGATLAAIEGLGA---DIEGKLVLIAGGQGKGA 359 (448)
T ss_pred --CHHHHHHHHHHCCCCCEEEEEEEE-------CCCEEEEECCCCCCHHHHHHHHHHHHH---HCCCCEEEEECCCCCCC
T ss_conf --878989988635571205799996-------188899968998997899999996465---23686899937866666
Q ss_pred CHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHCCCCCCCEEEE---E
Q ss_conf 9899999888638889998422889984212789899999998549978996998999999998603588679999---4
Q gi|254780821|r 335 KYGRYLEAFVELSPIVLSVSLICRGRERQSISITPKVLMQEAKKLGFQAMACSSMIEALSRVRKINEELPPPLILI---A 411 (429)
Q Consensus 335 d~~~~l~~l~~~~d~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~eAi~~a~~~~~~~~~d~VLV---~ 411 (429)
T Consensus 360 d~~~l~~~~~~~v~~v~l~------------G~~~~~i~~~l~~-~~~~~~~~~l~~Av~~a~~~a--~~gd~VLlSPa~ 424 (448)
T PRK03803 360 DFSELREPVAKYCRAVVLI------------GRDAELIEQALGD-AVPLVRAATLEEAVTQAAELA--QPGDAVLLSPAC 424 (448)
T ss_pred CHHHHHHHHHHCCEEEEEE------------CCCHHHHHHHHCC-CCCEEECCCHHHHHHHHHHHC--CCCCEEEECCCC
T ss_conf 8799999997366099997------------9599999997506-898799499999999999857--898989989744
Q ss_pred CCH------HHHHHHHHHC
Q ss_conf 977------9999999987
Q gi|254780821|r 412 GSL------YLAGEALREN 424 (429)
Q Consensus 412 GS~------ylvge~l~~~ 424 (429)
T Consensus 425 aSfD~f~nyeeRG~~F~~~ 443 (448)
T PRK03803 425 ASLDMFKNFEERGRQFAQA 443 (448)
T ss_pred CCCCCCCCHHHHHHHHHHH
T ss_conf 0201317999999999999